Pregenerated sensors for PRL2C5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055360

Ensembl transcript IDs: ENSMUST00000021778.14, ENSMUST00000126540.8, ENSMUST00000151144.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	ATGGGACTACTCACCATGGTGCTCATGAGGGCATTAACCCCGTTCTaGACTGCGTTGATCTTTTTCTTTATGTCTGTGGCTTTGGAGATG	+
Preference number: 5 (lower is better) Translates to: MGLLTMVLMRALTPF*TALIFFFMSVALEM Trigger: CATCTCCAAAGCCACAGACATAAAGAAAAAGATCAACGCAGTCCAGAACGGGGTTAATGCCCTCATGAGCACCATGGTGAGTAGTCCCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151144.2
CDS CCA 90 bp	TCTTCATCTCCATTCATGGTGCTCATGAGGGCATTAACCCCGTTCTaGACTGCGTTGATCTTTTTCTTTATGTCTGTGGCTTTGGAGATG	+
Preference number: 5 (lower is better) Translates to: SSSPFMVLMRALTPF*TALIFFFMSVALEM Trigger: CATCTCCAAAGCCACAGACATAAAGAAAAAGATCAACGCAGTCCAGAACGGGGTTAATGCCCTCATGAGCACCATGAATGGAGATGAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021778.14 ENSMUST00000126540.8
CDS CCA 90 bp	AAATCATGTCTCCTGATTTCAGAAGAGCTTCATAGCGTATGTGCCTaGCTTGTTCCTTGTTTTCTGGAGTTGGAAGGAAAGAAGTATGGC	+
Preference number: 5 (lower is better) Translates to: KSCLLISEELHSVCA*LVPCFLELEGKKYG Trigger: GCCATACTTCTTTCCTTCCAACTCCAGAAAACAAGGAACAAGCCAGGCACATACGCTATGAAGCTCTTCTGAAATCAGGAGACATGATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021778.14 ENSMUST00000126540.8 ENSMUST00000151144.2
CDS GCA 90 bp	ATCATGCCATATGAAGAACGAATGCGAGCATCTTCATTGTCAGATTaGAAGAACCAGGCAGGGTTCTTATTTTCTTCATCTCCATTCATG	+
Preference number: 5 (lower is better) Translates to: IMPYEERMRASSLSD*KNQAGFLFSSSPFM Trigger: CATGAATGGAGATGAAGAAAATAAGAACCCTGCCTGGTTCTTGCAATCTGACAATGAAGATGCTCGCATTCGTTCTTCATATGGCATGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021778.14 ENSMUST00000126540.8
CDS TCA 72 bp	CAGAGGGTTTTCCCAGGCATCCAAAATCATGTCTCCTaGTTTCAGAAGAGCTTCATAGCGTATGTGCCTGGC	+
Preference number: 6 (lower is better) Translates to: QRVFPGIQNHVS*FQKSFIAYVPG Trigger: GCCAGGCACATACGCTATGAAGCTCTTCTGAAATCAGGAGACATGATTTTGGATGCCTGGGAAAACCCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000021778.14 ENSMUST00000126540.8 ENSMUST00000151144.2
CDS CCA 72 bp	CTCACCATGGTGCTCATGAGGGCATTAACCCCGTTCTaGACTGCGTTGATCTTTTTCTTTATGTCTGTGGCT	+
Preference number: 6 (lower is better) Translates to: LTMVLMRALTPF*TALIFFFMSVA Trigger: AGCCACAGACATAAAGAAAAAGATCAACGCAGTCCAGAACGGGGTTAATGCCCTCATGAGCACCATGGTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151144.2
CDS CCA 72 bp	GCGTATGTGCCTGGCTTGTTCCTTGTTTTCTGGAGTTaGAAGGAAAGAAGTATGGCATCTCATGGGGCTTTT	+
Preference number: 6 (lower is better) Translates to: AYVPGLFLVFWS*KERSMASHGAF Trigger: AAAAGCCCCATGAGATGCCATACTTCTTTCCTTCCAACTCCAGAAAACAAGGAACAAGCCAGGCACATACGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000021778.14 ENSMUST00000126540.8 ENSMUST00000151144.2
CDS CCA 72 bp	CCATTCATGGTGCTCATGAGGGCATTAACCCCGTTCTaGACTGCGTTGATCTTTTTCTTTATGTCTGTGGCT	+
Preference number: 6 (lower is better) Translates to: PFMVLMRALTPF*TALIFFFMSVA Trigger: AGCCACAGACATAAAGAAAAAGATCAACGCAGTCCAGAACGGGGTTAATGCCCTCATGAGCACCATGAATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021778.14 ENSMUST00000126540.8
CDS CCA 72 bp	CTCCTGATTTCAGAAGAGCTTCATAGCGTATGTGCCTaGCTTGTTCCTTGTTTTCTGGAGTTGGAAGGAAAG	+
Preference number: 6 (lower is better) Translates to: LLISEELHSVCA*LVPCFLELEGK Trigger: CTTTCCTTCCAACTCCAGAAAACAAGGAACAAGCCAGGCACATACGCTATGAAGCTCTTCTGAAATCAGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021778.14 ENSMUST00000126540.8 ENSMUST00000151144.2
CDS CAA 90 bp	CTCACCATGGTGCTCATGAGGGCATTAACCCCGTTCTGGACTGCGTaGATCTTTTTCTTTATGTCTGTGGCTTTGGAGATGATTATATCA	+
Preference number: 6 (lower is better) Translates to: LTMVLMRALTPFWTA*IFFFMSVALEMIIS Trigger: TGATATAATCATCTCCAAAGCCACAGACATAAAGAAAAAGATCAACGCAGTCCAGAACGGGGTTAATGCCCTCATGAGCACCATGGTGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151144.2
CDS CAA 90 bp	CCATTCATGGTGCTCATGAGGGCATTAACCCCGTTCTGGACTGCGTaGATCTTTTTCTTTATGTCTGTGGCTTTGGAGATGATTATATCA	+
Preference number: 6 (lower is better) Translates to: PFMVLMRALTPFWTA*IFFFMSVALEMIIS Trigger: TGATATAATCATCTCCAAAGCCACAGACATAAAGAAAAAGATCAACGCAGTCCAGAACGGGGTTAATGCCCTCATGAGCACCATGAATGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021778.14 ENSMUST00000126540.8
CDS CAA 72 bp	ATCATGCCATATGAAGAACGAATGCGAGCATCTTCATaGTCAGATTGCAAGAACCAGGCAGGGTTCTTATTT	+
Preference number: 6 (lower is better) Translates to: IMPYEERMRASS*SDCKNQAGFLF Trigger: AAATAAGAACCCTGCCTGGTTCTTGCAATCTGACAATGAAGATGCTCGCATTCGTTCTTCATATGGCATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021778.14 ENSMUST00000126540.8
CDS GCA 72 bp	TATGAAGAACGAATGCGAGCATCTTCATTGTCAGATTaGAAGAACCAGGCAGGGTTCTTATTTTCTTCATCT	+
Preference number: 6 (lower is better) Translates to: YEERMRASSLSD*KNQAGFLFSSS Trigger: AGATGAAGAAAATAAGAACCCTGCCTGGTTCTTGCAATCTGACAATGAAGATGCTCGCATTCGTTCTTCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021778.14 ENSMUST00000126540.8

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