Pregenerated sensors for PRL2C3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056457

Ensembl transcript IDs: ENSMUST00000099805.3, ENSMUST00000222139.2, ENSMUST00000223098.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GATTGCAAGAACCAGGCAGGGTTCTTCTTTTCTTCATCTCCATTCTaGAGCATGGTGCTCATGAGGGCATTAACCCCGTTCCGGACTGCG	+
Preference number: 5 (lower is better) Translates to: DCKNQAGFFFSSSPF*SMVLMRALTPFRTA Trigger: CGCAGTCCGGAACGGGGTTAATGCCCTCATGAGCACCATGCTTCAGAATGGAGATGAAGAAAAGAAGAACCCTGCCTGGTTCTTGCAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099805.3
CDS TCA 90 bp	CATCCAAAATCATGGCTCCTGATTTCAGAAGAGCTGCATAGTGTGTaGGCCTGGCTTGTTCCTTGTTTTCTGGAGTTGGAAGGAAAGAAG	+
Preference number: 5 (lower is better) Translates to: HPKSWLLISEELHSV*AWLVPCFLELEGKK Trigger: CTTCTTTCCTTCCAACTCCAGAAAACAAGGAACAAGCCAGGCTCACACACTATGCAGCTCTTCTGAAATCAGGAGCCATGATTTTGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099805.3 ENSMUST00000222139.2 ENSMUST00000223098.2
CDS TCA 90 bp	TTCTTAAAGTCATTGTCTAGGCAGCTGATCATGCCATATAAAGAATaGATGCGAGCATCTTCATTGTCAGATTGCAAGAACCAGGCAGGG	+
Preference number: 5 (lower is better) Translates to: FLKSLSRQLIMPYKE*MRASSLSDCKNQAG Trigger: CCCTGCCTGGTTCTTGCAATCTGACAATGAAGATGCTCGCATTCATTCTTTATATGGCATGATCAGCTGCCTAGACAATGACTTTAAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099805.3
CDS TCA 72 bp	CAGAGGGCTTTCCCAGGCATCCAAAATCATGGCTCCTaGTTTCAGAAGAGCTGCATAGTGTGTGAGCCTGGC	+
Preference number: 6 (lower is better) Translates to: QRAFPGIQNHGS*FQKSCIVCEPG Trigger: GCCAGGCTCACACACTATGCAGCTCTTCTGAAATCAGGAGCCATGATTTTGGATGCCTGGGAAAGCCCTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099805.3 ENSMUST00000222139.2 ENSMUST00000223098.2
CDS TCA 72 bp	AACCAGGCAGGGTTCTTCTTTTCTTCATCTCCATTCTaGAGCATGGTGCTCATGAGGGCATTAACCCCGTTC	+
Preference number: 6 (lower is better) Translates to: NQAGFFFSSSPF*SMVLMRALTPF Trigger: GAACGGGGTTAATGCCCTCATGAGCACCATGCTTCAGAATGGAGATGAAGAAAAGAAGAACCCTGCCTGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099805.3
CDS TCA 72 bp	TCATTGTCTAGGCAGCTGATCATGCCATATAAAGAATaGATGCGAGCATCTTCATTGTCAGATTGCAAGAAC	+
Preference number: 6 (lower is better) Translates to: SLSRQLIMPYKE*MRASSLSDCKN Trigger: GTTCTTGCAATCTGACAATGAAGATGCTCGCATTCATTCTTTATATGGCATGATCAGCTGCCTAGACAATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099805.3
CDS TCA 72 bp	TCATTGAACAGTTCTGAAACTTCTATACTGATATTATaGGACAAACTGCCGGCTAATTCAAATGTGTCTTCA	+
Preference number: 6 (lower is better) Translates to: SLNSSETSILIL*DKLPANSNVSS Trigger: TGAAGACACATTTGAATTAGCCGGCAGTTTGTCTCATAATATCAGTATAGAAGTTTCAGAACTGTTCAATGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099805.3 ENSMUST00000222139.2 ENSMUST00000223098.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu