Pregenerated sensors for PRL2C1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062551

Ensembl transcript IDs: ENSMUST00000054932.13, ENSMUST00000110335.10

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AACGAATGCGAGTATCTTCATTGTCAGATTGCAAGAGTGGCAGTCTaGACCAGGCAGGGTTCTTCTTTTCTTCATCTCCATTCTGAAGCA	+
Preference number: 5 (lower is better) Translates to: NECEYLHCQIARVAV*TRQGSSFLHLHSEA Trigger: TGCTTCAGAATGGAGATGAAGAAAAGAAGAACCCTGCCTGGTCCAGACTGCCACTCTTGCAATCTGACAATGAAGATACTCGCATTCGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110335.10
CDS GCA 90 bp	ATCTCCATTCATGGTGCTCATGAGGGAATTAACCCCCTTCTGGACTaGGTCGATCTTTTTCTTTATGTCTGTGACTTTGGAGATGATTTT	+
Preference number: 5 (lower is better) Translates to: ISIHGAHEGINPLLD*VDLFLYVCDFGDDF Trigger: AAAATCATCTCCAAAGTCACAGACATAAAGAAAAAGATCGACGCAGTCCAGAAGGGGGTTAATTCCCTCATGAGCACCATGAATGGAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000054932.13
CDS GCA 90 bp	ATTCTGAAGCATGGTGCTCATGAGGGAATTAACCCCCTTCTGGACTaGGTCGATCTTTTTCTTTATGTCTGTGACTTTGGAGATGATTTT	+
Preference number: 5 (lower is better) Translates to: ILKHGAHEGINPLLD*VDLFLYVCDFGDDF Trigger: AAAATCATCTCCAAAGTCACAGACATAAAGAAAAAGATCGACGCAGTCCAGAAGGGGGTTAATTCCCTCATGAGCACCATGCTTCAGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000110335.10
CDS CCA 90 bp	AAATCATTTCTCCTGATTTCAGAAGAGCTTCATAGTGTGTGTGCCTaGCTTGTTCCTTGTTTTCTGGAGTTGGAAGGAAAGAAGTATGGC	+
Preference number: 5 (lower is better) Translates to: KSFLLISEELHSVCA*LVPCFLELEGKKYG Trigger: GCCATACTTCTTTCCTTCCAACTCCAGAAAACAAGGAACAAGCCAGGCACACACACTATGAAGCTCTTCTGAAATCAGGAGAAATGATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054932.13 ENSMUST00000110335.10
CDS CCA 72 bp	GTGTGTGTGCCTGGCTTGTTCCTTGTTTTCTGGAGTTaGAAGGAAAGAAGTATGGCATCTCGTGGGGCTTTT	+
Preference number: 6 (lower is better) Translates to: VCVPGLFLVFWS*KERSMASRGAF Trigger: AAAAGCCCCACGAGATGCCATACTTCTTTCCTTCCAACTCCAGAAAACAAGGAACAAGCCAGGCACACACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054932.13 ENSMUST00000110335.10
CDS CCA 72 bp	ACGAATGCGAGTATCTTCATTGTCAGATTGCAAGAGTaGCAGTCTGGACCAGGCAGGGTTCTTCTTTTCTTC	+
Preference number: 6 (lower is better) Translates to: TNASIFIVRLQE*QSGPGRVLLFF Trigger: GAAGAAAAGAAGAACCCTGCCTGGTCCAGACTGCCACTCTTGCAATCTGACAATGAAGATACTCGCATTCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054932.13 ENSMUST00000110335.10
CDS CCA 72 bp	TGGGCACTGATGCAGCATTCTTCCACAATAACAAGTTaGTCATCAGTAGTAGGAGCAGTATCCAGGAACTTG	+
Preference number: 6 (lower is better) Translates to: WALMQHSSTITS*SSVVGAVSRNL Trigger: CAAGTTCCTGGATACTGCTCCTACTACTGATGACCAACTTGTTATTGTGGAAGAATGCTGCATCAGTGCCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054932.13 ENSMUST00000110335.10
CDS CCA 72 bp	CTCCTGATTTCAGAAGAGCTTCATAGTGTGTGTGCCTaGCTTGTTCCTTGTTTTCTGGAGTTGGAAGGAAAG	+
Preference number: 6 (lower is better) Translates to: LLISEELHSVCA*LVPCFLELEGK Trigger: CTTTCCTTCCAACTCCAGAAAACAAGGAACAAGCCAGGCACACACACTATGAAGCTCTTCTGAAATCAGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054932.13 ENSMUST00000110335.10
CDS CCA 72 bp	CCATTCATGGTGCTCATGAGGGAATTAACCCCCTTCTaGACTGCGTCGATCTTTTTCTTTATGTCTGTGACT	+
Preference number: 6 (lower is better) Translates to: PFMVLMRELTPF*TASIFFFMSVT Trigger: AGTCACAGACATAAAGAAAAAGATCGACGCAGTCCAGAAGGGGGTTAATTCCCTCATGAGCACCATGAATGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000054932.13
CDS CCA 72 bp	GAGTATCTTCATTGTCAGATTGCAAGAGTGGCAGTCTaGACCAGGCAGGGTTCTTCTTTTCTTCATCTCCAT	+
Preference number: 6 (lower is better) Translates to: EYLHCQIARVAV*TRQGSSFLHLH Trigger: ATGGAGATGAAGAAAAGAAGAACCCTGCCTGGTCCAGACTGCCACTCTTGCAATCTGACAATGAAGATACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054932.13 ENSMUST00000110335.10
CDS CAA 72 bp	ATGGGCACTGATGCAGCATTCTTCCACAATAACAAGTaGGTCATCAGTAGTAGGAGCAGTATCCAGGAACTT	+
Preference number: 6 (lower is better) Translates to: MGTDAAFFHNNK*VISSRSSIQEL Trigger: AAGTTCCTGGATACTGCTCCTACTACTGATGACCAACTTGTTATTGTGGAAGAATGCTGCATCAGTGCCCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054932.13 ENSMUST00000110335.10

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