Pregenerated sensors for PRL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021342Ensembl transcript IDs: ENSMUST00000018061.7, ENSMUST00000110369.10, ENSMUST00000224228.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGAGTGTCCCTGCTTTCTaGGCTGACCCCTGGCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: LKKWTFKDHLRKRWTECGSVPAF*ADPWLF Trigger: GAACAGCCAGGGGTCAGCCCAGAAAGCAGGGACACT...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CCA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTAGTGTCCCTGCTTTCTaGGCTGACCCCTGGCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: LLKKWTFKDHLRKRWTECSVPAF*ADPWLF Trigger: GAACAGCCAGGGGTCAGCCCAGAAAGCAGGGACACT...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR TCA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGGCAGAACAGCAGGTTTaGTATCAGCAACAGGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LKKWTFKDHLRKRWTECGAEQQV*YQQQEE Trigger: CTCCTCCTGTTGCTGATATCAAACCTGCTGTTCTGC...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CCA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGAGATCCCATTTCCTTTaGCTTCAGGATAGGCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: LKKWTFKDHLRKRWTECGRSHFL*LQDRPG Trigger: GCCAGGCCTATCCTGAAGCCAAAGGAAATGGGATCT...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR TCA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGGGCACCTCAGGACCTTaGGAAAATTGTCAACCTTGT | + |
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Preference number: 4 (lower is better) Translates to: LKKWTFKDHLRKRWTECGGTSGP*ENCQPC Trigger: ACAAGGTTGACAATTTTCTCAAGGTCCTGAGGTGCC...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR GCA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGGGCAGCGAATGGTGTTaGGCAAAGACAAGATTTTGG | + |
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Preference number: 4 (lower is better) Translates to: LKKWTFKDHLRKRWTECGGSEWC*AKTRFW Trigger: CCAAAATCTTGTCTTTGCGCAACACCATTCGCTGCC...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CCA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGACCAGCGGAACAGATTaGCAGAGGCTGAACATTTTG | + |
|
Preference number: 4 (lower is better) Translates to: LKKWTFKDHLRKRWTECGTSGTD*QRLNIL Trigger: CAAAATGTTCAGCCTCTGCCAATCTGTTCCGCTGGT...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR TCA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTCAGATTGGCAGAGGCTaGACATTTTGGCAGAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: LLKKWTFKDHLRKRWTECQIGRG*TFWQNS Trigger: GCTGTTCTGCCAAAATGTTCAGCCTCTGCCAATCTG...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR TCA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGCACCTCAGGACCTTaGGAAAATTGTCAACCTTGT | + |
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Preference number: 4 (lower is better) Translates to: LLKKWTFKDHLRKRWTECGTSGP*ENCQPC Trigger: ACAAGGTTGACAATTTTCTCAAGGTCCTGAGGTGCC...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR GCA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGACTCCCTCAAGAAGCTaGTTGTTTTGTTCCTCAATC | + |
|
Preference number: 4 (lower is better) Translates to: LKKWTFKDHLRKRWTECGTPSRS*LFCSSI Trigger: GATTGAGGAACAAAACAAGCAGCTTCTTGAGGGAGT...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR GCA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGCAGCGAATGGTGTTaGGCAAAGACAAGATTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LLKKWTFKDHLRKRWTECGSEWC*AKTRFW Trigger: CCAAAATCTTGTCTTTGCGCAACACCATTCGCTGCC...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CCA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTACCAGCGGAACAGATTaGCAGAGGCTGAACATTTTG | + |
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Preference number: 4 (lower is better) Translates to: LLKKWTFKDHLRKRWTECTSGTD*QRLNIL Trigger: CAAAATGTTCAGCCTCTGCCAATCTGTTCCGCTGGT...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR GCA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTACTCCCTCAAGAAGCTaGTTGTTTTGTTCCTCAATC | + |
|
Preference number: 4 (lower is better) Translates to: LLKKWTFKDHLRKRWTECTPSRS*LFCSSI Trigger: GATTGAGGAACAAAACAAGCAGCTTCTTGAGGGAGT...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CCA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGGTTCCTCAATCTCTTTaGCTCTTGATAGGATGTATT | + |
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Preference number: 4 (lower is better) Translates to: LKKWTFKDHLRKRWTECGVPQSL*LLIGCI Trigger: AATACATCCTATCAAGAGCCAAAGAGATTGAGGAAC...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CCA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGGCAAAGACAAGATTTTaGATTCTTCATCAACTCCCT | + |
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Preference number: 4 (lower is better) Translates to: LKKWTFKDHLRKRWTECGAKTRF*ILHQLP Trigger: AGGGAGTTGATGAAGAATCCAAAATCTTGTCTTTGC...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR GCA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGATAAACTCACGGTCTTaGACATACTGTTTATCGAAT | + |
|
Preference number: 4 (lower is better) Translates to: LKKWTFKDHLRKRWTECGINSRS*TYCLSN Trigger: ATTCGATAAACAGTATGTGCAAGACCGTGAGTTTAT...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CCA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGTTCCTCAATCTCTTTaGCTCTTGATAGGATGTATT | + |
|
Preference number: 4 (lower is better) Translates to: LLKKWTFKDHLRKRWTECVPQSL*LLIGCI Trigger: AATACATCCTATCAAGAGCCAAAGAGATTGAGGAAC...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CCA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGCAAAGACAAGATTTTaGATTCTTCATCAACTCCCT | + |
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Preference number: 4 (lower is better) Translates to: LLKKWTFKDHLRKRWTECAKTRF*ILHQLP Trigger: AGGGAGTTGATGAAGAATCCAAAATCTTGTCTTTGC...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CCA 90 bp | TGGGCAATTTGGCACCTCAGGACCTTGAGAAAATTGTCAACCTTGTaGGAATCCCTGCGCAGGCAGCGAATGGTGTTGCGCAAAGACAAG | + |
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Preference number: 5 (lower is better) Translates to: WAIWHLRTLRKLSTL*ESLRRQRMVLRKDK Trigger: CTTGTCTTTGCGCAACACCATTCGCTGCCTGCGCAGGGATTCCCACAAGGTTGACAATTTTCTCAAGGTCCTGAGGTGCCAAATTGCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CCA 90 bp | TCTCAACTCCCTCAAGAAGCTGCTTGTTTTGTTCCTCAATCTCTTTaGCTCTTGATAGGATGTATTCGGGGGCTTCTTGAATACCACCTA | + |
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Preference number: 5 (lower is better) Translates to: SQLPQEAACFVPQSL*LLIGCIRGLLEYHL Trigger: TAGGTGGTATTCAAGAAGCCCCCGAATACATCCTATCAAGAGCCAAAGAGATTGAGGAACAAAACAAGCAGCTTCTTGAGGGAGTTGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGGGCAGAACAGCAGGTTaGATATCAGCAACAGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGGRTAG*ISATGG Trigger: TCCTCCTGTTGCTGATATCAAACCTGCTGTTCTGCC...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGCACCAGCGGAACAGATaGGCAGAGGCTGAACATTTT | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGHQRNR*AEAEHF Trigger: AAAATGTTCAGCCTCTGCCAATCTGTTCCGCTGGTG...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGAGGGACTTTCAGGGCTaGTTCCTTGTCTTCAGGTGT | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGRDFQG*FLVFRC Trigger: ACACCTGAAGACAAGGAACAAGCCCTGAAAGTCCCT...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGAGAAAATTGTCAACCTaGTGGGAATCCCTGCGCAGG | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGRKLST*WESLRR Trigger: CCTGCGCAGGGATTCCCACAAGGTTGACAATTTTCT...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGGAAGTGGGGCAGTCATaGATGACCTTGACCATAAAC | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGEVGQS*MTLTIN Trigger: GTTTATGGTCAAGGTCATCAATGACTGCCCCACTTC...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTTTCAGGGCTTGTTCCTaGTCTTCAGGTGTAGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECFRACS*SSGVAR Trigger: CCTGGCTACACCTGAAGACAAGGAACAAGCCCTGAA...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGCAATCTCTTTGGCTCTaGATAGGATGTATTCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGQSLWL*IGCIRG Trigger: CCCCCGAATACATCCTATCAAGAGCCAAAGAGATTG...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGCAGAACAGCAGGTTaGATATCAGCAACAGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECGRTAG*ISATGG Trigger: TCCTCCTGTTGCTGATATCAAACCTGCTGTTCTGCC...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTCACCAGCGGAACAGATaGGCAGAGGCTGAACATTTT | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECHQRNR*AEAEHF Trigger: AAAATGTTCAGCCTCTGCCAATCTGTTCCGCTGGTG...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTAGGGACTTTCAGGGCTaGTTCCTTGTCTTCAGGTGT | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECRDFQG*FLVFRC Trigger: ACACCTGAAGACAAGGAACAAGCCCTGAAAGTCCCT...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGCCCTCAAGAAGCTGCTaGTTTTGTTCCTCAATCTCT | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGPSRSC*FCSSIS Trigger: AGAGATTGAGGAACAAAACAAGCAGCTTCTTGAGGG...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTAGAAAATTGTCAACCTaGTGGGAATCCCTGCGCAGG | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECRKLST*WESLRR Trigger: CCTGCGCAGGGATTCCCACAAGGTTGACAATTTTCT...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGAGGACCTTGAGAAAATaGTCAACCTTGTGGGAATCC | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGRTLRK*STLWES Trigger: GGATTCCCACAAGGTTGACAATTTTCTCAAGGTCCT...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGTTTTGATGGGCAATTaGGCACCTCAGGACCTTGAG | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECVLMGN*APQDLE Trigger: CTCAAGGTCCTGAGGTGCCAAATTGCCCATCAAAAC...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS GCA 90 bp | GAAGTGGGGCAGTCATTGATGACCTTGACCATAAACTCACGGTCTTaGACATACTGTTTATCGAATTCAATGAACATATCTGTATACAGG | + |
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Preference number: 5 (lower is better) Translates to: EVGQSLMTLTINSRS*TYCLSNSMNISVYR Trigger: CCTGTATACAGATATGTTCATTGAATTCGATAAACAGTATGTGCAAGACCGTGAGTTTATGGTCAAGGTCATCAATGACTGCCCCACTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTCAATCTCTTTGGCTCTaGATAGGATGTATTCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECQSLWL*IGCIRG Trigger: CCCCCGAATACATCCTATCAAGAGCCAAAGAGATTG...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGAAGAAGCTGCTTGTTTaGTTCCTCAATCTCTTTGGC | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGKKLLV*FLNLFG Trigger: GCCAAAGAGATTGAGGAACAAAACAAGCAGCTTCTT...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGCGCAAAGACAAGATTTaGGATTCTTCATCAACTCCC | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGRKDKI*DSSSTP Trigger: GGGAGTTGATGAAGAATCCAAAATCTTGTCTTTGCG...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTTGGCACCTCAGGACCTaGAGAAAATTGTCAACCTTG | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECWHLRT*RKLSTL Trigger: CAAGGTTGACAATTTTCTCAAGGTCCTGAGGTGCCA...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGCATAAACTCACGGTCTaGCACATACTGTTTATCGAA | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGHKLTV*HILFIE Trigger: TTCGATAAACAGTATGTGCAAGACCGTGAGTTTATG...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTGGGTGTTCCTCAATCTCTTaGGCTCTTGATAGGATGTAT | + |
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Preference number: 5 (lower is better) Translates to: LKKWTFKDHLRKRWTECGCSSIS*ALDRMY Trigger: ATACATCCTATCAAGAGCCAAAGAGATTGAGGAACA...CCCACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTCCCTCAAGAAGCTGCTaGTTTTGTTCCTCAATCTCT | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECPSRSC*FCSSIS Trigger: AGAGATTGAGGAACAAAACAAGCAGCTTCTTGAGGG...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTAGGACCTTGAGAAAATaGTCAACCTTGTGGGAATCC | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECRTLRK*STLWES Trigger: GGATTCCCACAAGGTTGACAATTTTCTCAAGGTCCT...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTAAGAAGCTGCTTGTTTaGTTCCTCAATCTCTTTGGC | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECKKLLV*FLNLFG Trigger: GCCAAAGAGATTGAGGAACAAAACAAGCAGCTTCTT...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS-3UTR CAA 90 bp | CTTTTGAAGAAGTGGACTTTTAAGGATCATCTCAGAAAGAGATGGACTGAATGTTGTTCCTCAATCTCTTaGGCTCTTGATAGGATGTAT | + |
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Preference number: 5 (lower is better) Translates to: LLKKWTFKDHLRKRWTECCSSIS*ALDRMY Trigger: ATACATCCTATCAAGAGCCAAAGAGATTGAGGAACA...ACATTCAGTCCATCTCTTTCTGAGATGATCCTTAAAAGTCCACTTCTTCAAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 72 bp | CTCGGAGAGAAGTCTGGCAGTCACCAGCGGAACAGATaGGCAGAGGCTGAACATTTTGGCAGAACAGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: LGEKSGSHQRNR*AEAEHFGRTAG Trigger: ACCTGCTGTTCTGCCAAAATGTTCAGCCTCTGCCAATCTGTTCCGCTGGTGACTGCCAGACTTCTCTCCGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 90 bp | ACTGAGGATCAGGTTCAGAAGAACTTCCGGAGGGACTTTCAGGGCTaGTTCCTTGTCTTCAGGTGTAGCCAGGGAAGAAGTGGGGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: TEDQVQKNFRRDFQG*FLVFRCSQGRSGAV Trigger: GACTGCCCCACTTCTTCCCTGGCTACACCTGAAGACAAGGAACAAGCCCTGAAAGTCCCTCCGGAAGTTCTTCTGAACCTGATCCTCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CCA 72 bp | TCGGAGAGAAGTCTGGCAGTCACCAGCGGAACAGATTaGCAGAGGCTGAACATTTTGGCAGAACAGCAGGTT | + |
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Preference number: 6 (lower is better) Translates to: SERSLAVTSGTD*QRLNILAEQQV Trigger: AACCTGCTGTTCTGCCAAAATGTTCAGCCTCTGCCAATCTGTTCCGCTGGTGACTGCCAGACTTCTCTCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 90 bp | CGGAACAGATTGGCAGAGGCTGAACATTTTGGCAGAACAGCAGGTTaGATATCAGCAACAGGAGGAGTGTCCCTTTCTGGGCTGACCCCT | + |
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Preference number: 6 (lower is better) Translates to: RNRLAEAEHFGRTAG*ISATGGVSLSGLTP Trigger: AGGGGTCAGCCCAGAAAGGGACACTCCTCCTGTTGCTGATATCAAACCTGCTGTTCTGCCAAAATGTTCAGCCTCTGCCAATCTGTTCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018061.7 |
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| CDS CAA 90 bp | CGGAACAGATTGGCAGAGGCTGAACATTTTGGCAGAACAGCAGGTTaGATATCAGCAACAGGAGGAGTGTCCCTGCTTTCTGGGCTGACC | + |
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Preference number: 6 (lower is better) Translates to: RNRLAEAEHFGRTAG*ISATGGVSLLSGLT Trigger: GGTCAGCCCAGAAAGCAGGGACACTCCTCCTGTTGCTGATATCAAACCTGCTGTTCTGCCAAAATGTTCAGCCTCTGCCAATCTGTTCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 90 bp | ATCAGGTTCAGAAGAACTTCCGGAGGGACTTTCAGGGCTTGTTCCTaGTCTTCAGGTGTAGCCAGGGAAGAAGTGGGGCAGTCATTGATG | + |
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Preference number: 6 (lower is better) Translates to: IRFRRTSGGTFRACS*SSGVAREEVGQSLM Trigger: CATCAATGACTGCCCCACTTCTTCCCTGGCTACACCTGAAGACAAGGAACAAGCCCTGAAAGTCCCTCCGGAAGTTCTTCTGAACCTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS TCA 72 bp | TGGCAGAGGCTGAACATTTTGGCAGAACAGCAGGTTTaGTATCAGCAACAGGAGGAGTGTCCCTTTCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: WQRLNILAEQQV*YQQQEECPFLG Trigger: GCCCAGAAAGGGACACTCCTCCTGTTGCTGATATCAAACCTGCTGTTCTGCCAAAATGTTCAGCCTCTGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018061.7 |
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| CDS CAA 72 bp | CAGGTTCAGAAGAACTTCCGGAGGGACTTTCAGGGCTaGTTCCTTGTCTTCAGGTGTAGCCAGGGAAGAAGT | + |
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Preference number: 6 (lower is better) Translates to: QVQKNFRRDFQG*FLVFRCSQGRS Trigger: ACTTCTTCCCTGGCTACACCTGAAGACAAGGAACAAGCCCTGAAAGTCCCTCCGGAAGTTCTTCTGAACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS TCA 72 bp | TGGCAGAGGCTGAACATTTTGGCAGAACAGCAGGTTTaGTATCAGCAACAGGAGGAGTGTCCCTGCTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: WQRLNILAEQQV*YQQQEECPCFL Trigger: CAGAAAGCAGGGACACTCCTCCTGTTGCTGATATCAAACCTGCTGTTCTGCCAAAATGTTCAGCCTCTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 72 bp | TTGGCAGAGGCTGAACATTTTGGCAGAACAGCAGGTTaGATATCAGCAACAGGAGGAGTGTCCCTTTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: LAEAEHFGRTAG*ISATGGVSLSG Trigger: CCCAGAAAGGGACACTCCTCCTGTTGCTGATATCAAACCTGCTGTTCTGCCAAAATGTTCAGCCTCTGCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018061.7 |
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| CDS CAA 72 bp | TCTTCAGGTGTAGCCAGGGAAGAAGTGGGGCAGTCATaGATGACCTTGACCATAAACTCACGGTCTTGCACA | + |
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Preference number: 6 (lower is better) Translates to: SSGVAREEVGQS*MTLTINSRSCT Trigger: TGTGCAAGACCGTGAGTTTATGGTCAAGGTCATCAATGACTGCCCCACTTCTTCCCTGGCTACACCTGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 72 bp | TTGGCAGAGGCTGAACATTTTGGCAGAACAGCAGGTTaGATATCAGCAACAGGAGGAGTGTCCCTGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: LAEAEHFGRTAG*ISATGGVSLLS Trigger: AGAAAGCAGGGACACTCCTCCTGTTGCTGATATCAAACCTGCTGTTCTGCCAAAATGTTCAGCCTCTGCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 90 bp | TGTTCCTTGTCTTCAGGTGTAGCCAGGGAAGAAGTGGGGCAGTCATaGATGACCTTGACCATAAACTCACGGTCTTGCACATACTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: CSLSSGVAREEVGQS*MTLTINSRSCTYCL Trigger: TAAACAGTATGTGCAAGACCGTGAGTTTATGGTCAAGGTCATCAATGACTGCCCCACTTCTTCCCTGGCTACACCTGAAGACAAGGAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 90 bp | CTCCCTCAAGAAGCTGCTTGTTTTGTTCCTCAATCTCTTTGGCTCTaGATAGGATGTATTCGGGGGCTTCTTGAATACCACCTACTCCAG | + |
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Preference number: 6 (lower is better) Translates to: LPQEAACFVPQSLWL*IGCIRGLLEYHLLQ Trigger: CTGGAGTAGGTGGTATTCAAGAAGCCCCCGAATACATCCTATCAAGAGCCAAAGAGATTGAGGAACAAAACAAGCAGCTTCTTGAGGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CCA 72 bp | GCAGGCAGCGAATGGTGTTGCGCAAAGACAAGATTTTaGATTCTTCATCAACTCCCTGTAGGGATGGAAGTT | + |
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Preference number: 6 (lower is better) Translates to: AGSEWCCAKTRF*ILHQLPVGMEV Trigger: AACTTCCATCCCTACAGGGAGTTGATGAAGAATCCAAAATCTTGTCTTTGCGCAACACCATTCGCTGCCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 72 bp | GTAGCCAGGGAAGAAGTGGGGCAGTCATTGATGACCTaGACCATAAACTCACGGTCTTGCACATACTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: VAREEVGQSLMT*TINSRSCTYCL Trigger: TAAACAGTATGTGCAAGACCGTGAGTTTATGGTCAAGGTCATCAATGACTGCCCCACTTCTTCCCTGGCTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 90 bp | TCTTCAGGTGTAGCCAGGGAAGAAGTGGGGCAGTCATTGATGACCTaGACCATAAACTCACGGTCTTGCACATACTGTTTATCGAATTCA | + |
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Preference number: 6 (lower is better) Translates to: SSGVAREEVGQSLMT*TINSRSCTYCLSNS Trigger: TGAATTCGATAAACAGTATGTGCAAGACCGTGAGTTTATGGTCAAGGTCATCAATGACTGCCCCACTTCTTCCCTGGCTACACCTGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS TCA 72 bp | TATCTGTATACAGGGTATGGATGTAGTGAGAAAGTATaGCCACACGGTCAAACAGCTCTCGGAGAGAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: YLYTGYGCSEKV*PHGQTALGEKS Trigger: AGACTTCTCTCCGAGAGCTGTTTGACCGTGTGGTCATACTTTCTCACTACATCCATACCCTGTATACAGATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 72 bp | GAAGCTGCTTGTTTTGTTCCTCAATCTCTTTGGCTCTaGATAGGATGTATTCGGGGGCTTCTTGAATACCAC | + |
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Preference number: 6 (lower is better) Translates to: EAACFVPQSLWL*IGCIRGLLEYH Trigger: GTGGTATTCAAGAAGCCCCCGAATACATCCTATCAAGAGCCAAAGAGATTGAGGAACAAAACAAGCAGCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 72 bp | TGGCTAATTATCTTCTCAACTCCCTCAAGAAGCTGCTaGTTTTGTTCCTCAATCTCTTTGGCTCTTGATAGG | + |
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Preference number: 6 (lower is better) Translates to: WLIIFSTPSRSC*FCSSISLALDR Trigger: CCTATCAAGAGCCAAAGAGATTGAGGAACAAAACAAGCAGCTTCTTGAGGGAGTTGAGAAGATAATTAGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS CAA 90 bp | AGAAGTGGGGCAGTCATTGATGACCTTGACCATAAACTCACGGTCTaGCACATACTGTTTATCGAATTCAATGAACATATCTGTATACAG | + |
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Preference number: 6 (lower is better) Translates to: RSGAVIDDLDHKLTV*HILFIEFNEHICIQ Trigger: CTGTATACAGATATGTTCATTGAATTCGATAAACAGTATGTGCAAGACCGTGAGTTTATGGTCAAGGTCATCAATGACTGCCCCACTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS TCA 72 bp | ACTCACGGTCTTGCACATACTGTTTATCGAATTCAATaGACATATCTGTATACAGGGTATGGATGTAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: THGLAHTVYRIQ*TYLYTGYGCSE Trigger: CTCACTACATCCATACCCTGTATACAGATATGTTCATTGAATTCGATAAACAGTATGTGCAAGACCGTGAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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| CDS GCA 72 bp | CAGTCATTGATGACCTTGACCATAAACTCACGGTCTTaGACATACTGTTTATCGAATTCAATGAACATATCT | + |
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Preference number: 6 (lower is better) Translates to: QSLMTLTINSRS*TYCLSNSMNIS Trigger: AGATATGTTCATTGAATTCGATAAACAGTATGTGCAAGACCGTGAGTTTATGGTCAAGGTCATCAATGACTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018061.7 ENSMUST00000110369.10 ENSMUST00000224228.2 |
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