Pregenerated sensors for PRKRA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002731

Ensembl transcript IDs: ENSMUST00000002808.7

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	AGGGGCTCTTCAGAATCCACTCCACAAAGCTTTGCACAAAAGAGTTTCAGCACCAAAGTTGACGGAATCTaGAGAGATTTGGAAAGGACA	+
Preference number: 2 (lower is better) Translates to: RGSSESTPQSFAQKSFSTKVDGI*RDLERT Trigger: TGTCCTTTCCAAATCTCTTCAGATTCCGTCAACTTT...GGTGCTGAAACTCTTTTGTGCAAAGCTTTGTGGAGTGGATTCTGAAGAGCCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
3UTR-3UTR TCA 90 bp	AAAGGGGCTCTTCAGAATCCACTCCACAAAGCTTTGCACAAAAGAGTTTCAGCATCTGACCCTGTAAAATaGAAACCACACTCAGCCTTG	+
Preference number: 2 (lower is better) Translates to: KGALQNPLHKALHKRVSASDPVK*KPHSAL Trigger: CAAGGCTGAGTGTGGTTTTCATTTTACAGGGTCAGA...TGCTGAAACTCTTTTGTGCAAAGCTTTGTGGAGTGGATTCTGAAGAGCCCCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
3UTR CAA 90 bp	AAGAGATTTGGAAAGGACACACAGACATACATTACAGTAAACATTTaGCTTGGAAAGAAGGGCGAGGGAAACTTCTTTGCGCCGCAGAAA	+
Preference number: 2 (lower is better) Translates to: KRFGKDTQTYITVNI*LGKKGEGNFFAPQK Trigger: TTTCTGCGGCGCAAAGAAGTTTCCCTCGCCCTTCTTTCCAAGCAAAATGTTTACTGTAATGTATGTCTGTGTGTCCTTTCCAAATCTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
3UTR-3UTR TCA 90 bp	GTTTCAGCACCAGTAAGGCTGTTTTATCTCTTTACCGTTACAGTCAAACATGCATTCAACCTATGCGTCTaGCCCTGTAAAATGAAAACC	+
Preference number: 2 (lower is better) Translates to: VSAPVRLFYLFTVTVKHAFNLCV*PCKMKT Trigger: GGTTTTCATTTTACAGGGTCAGACGCATAGGTTGAA...TGCATGTTTGACTGTAACGGTAAAGAGATAAAACAGCCTTACTGGTGCTGAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
3UTR-3UTR CCA 90 bp	AAAAGAGTTTCAGCACCAGTAAGGCTGTTTTATCTCTTTACCGTTACAGTCAAAGAATCTGAAGAGATTTaGAAAGGACACACAGACATA	+
Preference number: 2 (lower is better) Translates to: KRVSAPVRLFYLFTVTVKESEEI*KGHTDI Trigger: TATGTCTGTGTGTCCTTTCCAAATCTCTTCAGATTC...TTTGACTGTAACGGTAAAGAGATAAAACAGCCTTACTGGTGCTGAAACTCTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
3UTR-3UTR CAA 90 bp	AGGGGCTCTTCAGAATCCACTCCACAAAGCTTTGCACAAAAGAGTTTCAGCACCATTACAGTAAACATTTaGCTTGGAAAGAAGGGCGAG	+
Preference number: 3 (lower is better) Translates to: RGSSESTPQSFAQKSFSTITVNI*LGKKGE Trigger: CTCGCCCTTCTTTCCAAGCAAAATGTTTACTGTAAT...GGTGCTGAAACTCTTTTGTGCAAAGCTTTGTGGAGTGGATTCTGAAGAGCCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
3UTR TCA 72 bp	CGTTACAGTCAAACATGCATGTTCAACCTATGCGTCTaGCCCTGTAAAATGAAAACCACACTCAGCCTTGTG	+
Preference number: 3 (lower is better) Translates to: RYSQTCMFNLCV*PCKMKTTLSLV Trigger: CACAAGGCTGAGTGTGGTTTTCATTTTACAGGGTCAGACGCATAGGTTGAACATGCATGTTTGACTGTAACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
CDS-3UTR GCA 90 bp	AGGGGCTCTTCAGAATCCACTCCACAAAGCTTTGCACAAAAGAGTTTCAGCACCCGTCACTCTGTGCATTaGCACAGGAGATGCCTGAGC	+
Preference number: 4 (lower is better) Translates to: RGSSESTPQSFAQKSFSTRHSVH*HRRCLS Trigger: GCTCAGGCATCTCCTGTGGCAATGCACAGAGTGACG...GGTGCTGAAACTCTTTTGTGCAAAGCTTTGTGGAGTGGATTCTGAAGAGCCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
CDS-3UTR TCA 90 bp	AAGAAGGGCGAGGGAAACTTCTTTGCGCCGCAGAAAGATTTCCTAAGTCGCTCCTCCTTTTCAGGAGGTTaGTCTTCTCACCAGGGGAAT	+
Preference number: 4 (lower is better) Translates to: KKGEGNFFAPQKDFLSRSSFSGG*SSHQGN Trigger: ATTCCCCTGGTGAGAAGATCAACCTCCTGAAAAGGA...GGAGCGACTTAGGAAATCTTTCTGCGGCGCAAAGAAGTTTCCCTCGCCCTTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
CDS-3UTR GCA 90 bp	TTGCTTGGAAAGAAGGGCGAGGGAAACTTCTTTGCGCCGCAGAAAGATTTCCTAACTGGTGGACAGCTCTaGGAGACACTGATACTGTCC	+
Preference number: 4 (lower is better) Translates to: LLGKKGEGNFFAPQKDFLTGGQL*ETLILS Trigger: GGACAGTATCAGTGTCTCGCAGAGCTGTCCACCAGT...TAGGAAATCTTTCTGCGGCGCAAAGAAGTTTCCCTCGCCCTTCTTTCCAAGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
CDS-3UTR TCA 90 bp	AGGGGCTCTTCAGAATCCACTCCACAAAGCTTTGCACAAAAGAGTTTCAGCACCAGTCGCCAGCCATGGTaGATTGCTAATTCCTGTAAT	+
Preference number: 4 (lower is better) Translates to: RGSSESTPQSFAQKSFSTSRQPW*IANSCN Trigger: ATTACAGGAATTAGCAATTCACCATGGCTGGCGACT...GGTGCTGAAACTCTTTTGTGCAAAGCTTTGTGGAGTGGATTCTGAAGAGCCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
CDS-3UTR TCA 90 bp	GTTTCAGCACCAGTAAGGCTGTTTTATCTCTTTACCGTTACAGTCAAACATGCATACTGCAGAGCATTGTaGGCAGCGTCACTCTGTGCA	+
Preference number: 4 (lower is better) Translates to: VSAPVRLFYLFTVTVKHAYCRAL*AASLCA Trigger: TGCACAGAGTGACGCTGCTCACAATGCTCTGCAGTA...TGCATGTTTGACTGTAACGGTAAAGAGATAAAACAGCCTTACTGGTGCTGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
CDS-3UTR GCA 90 bp	AGAGTTTCAGCACCAGTAAGGCTGTTTTATCTCTTTACCGTTACAGTCAAACATTTGTACCTTCACCTGTaGAAGTTATGTCACCAACGG	+
Preference number: 4 (lower is better) Translates to: RVSAPVRLFYLFTVTVKHLYLHL*KLCHQR Trigger: CCGTTGGTGACATAACTTGCACAGGTGAAGGTACAA...ATGTTTGACTGTAACGGTAAAGAGATAAAACAGCCTTACTGGTGCTGAAACTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
CDS-3UTR CAA 90 bp	AAAGGGGCTCTTCAGAATCCACTCCACAAAGCTTTGCACAAAAGAGTTTCAGCACTCCTTTTCAGGAGGTaGATCTTCTCACCAGGGGAA	+
Preference number: 5 (lower is better) Translates to: KGALQNPLHKALHKRVSALLFRR*IFSPGE Trigger: TTCCCCTGGTGAGAAGATCAACCTCCTGAAAAGGAG...TGCTGAAACTCTTTTGTGCAAAGCTTTGTGGAGTGGATTCTGAAGAGCCCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
CDS-3UTR CAA 90 bp	AGAGTTTCAGCACCAGTAAGGCTGTTTTATCTCTTTACCGTTACAGTCAAACATGCCAGCCATGGTGAATaGCTAATTCCTGTAATGAGC	+
Preference number: 5 (lower is better) Translates to: RVSAPVRLFYLFTVTVKHASHGE*LIPVMS Trigger: GCTCATTACAGGAATTAGCAATTCACCATGGCTGGC...ATGTTTGACTGTAACGGTAAAGAGATAAAACAGCCTTACTGGTGCTGAAACTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002808.7
CDS CCA 72 bp	TGGTGGACAGCTCTGCGAGACACTGATACTGTCCGTTaGCACTCAGCTCCTCTATATCCAAATACGTTATGT	+
Preference number: 6 (lower is better) Translates to: WWTALRDTDTVR*HSAPLYPNTLC Trigger: ACATAACGTATTTGGATATAGAGGAGCTGAGTGCCAACGGACAGTATCAGTGTCTCGCAGAGCTGTCCACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002808.7