RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRKDC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022672

Ensembl transcript IDs: ENSMUST00000023352.9

Found 477 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTGAAGTTAGTTAGGCCATTAGCATTGGTAACAAATGCCTTTATCTaGCCATCTCGCCAGCACCATAAAGTAGATTTCCTCTGTCTGTCA +
Preference number: 1 (lower is better)
Translates to: LKLVRPLALVTNAFI*PSRQHHKVDFLCLS
Trigger: TGACAGACAGAGGAAATCTACTTTATGGTGCTGGCGAGATGGTCAGATAAAGGCATTTGTTACCAATGCTAATGGCCTAACTAACTTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
3UTR-3UTR TCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAAGACAGAATGCTTTATaGTTGGTGACACCACAGACT +
Preference number: 2 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTRQNAL*LVTPQT
Trigger: AGTCTGTGGTGTCACCAATCATAAAGCATTCTGTCT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
3UTR GCA 72 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTaGTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGA +
Preference number: 3 (lower is better)
Translates to: HKVDFLCLSEIY*CQRRSRRSSRR
Trigger: TCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
3UTR GCA 72 bp TGGAGGTCAAAGGACAACTTCCTGGAGTTGGTTCACTaGCTCCAATATGGGTTTCTGGGATTGAAGTTAGTT +
Preference number: 3 (lower is better)
Translates to: WRSKDNFLELVH*LQYGFLGLKLV
Trigger: AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAAGTTGTCCTTTGACCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTGGCCCCGGCAGCACTaGAGCGGTCTGCTGCGGACA +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWWPRQH*SGLLRT
Trigger: TGTCCGCAGCAGACCGCTGCAGTGCTGCCGGGGCCA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTGTTCCCGAGGGCTCTaGGTGTGGCTCCGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWCSRGL*VWLRQW
Trigger: CCACTGCCGGAGCCACACTCAGAGCCCTCGGGAACA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTGGGAGCTGGCAAAGTaGGAACGCAGTGCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWWELAK*ERSARK
Trigger: CTTCCTGGCACTGCGTTCCCACTTTGCCAGCTCCCA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGGTTGTAGCACTCCAGTaGTGCAAGGAGGAGGTCCAG +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWVVALQ*CKEEVQ
Trigger: CTGGACCTCCTCCTTGCAGCACTGGAGTGCTACAAC...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGCCCGAACTCTTTTGGTaGGTGGTTCCTTGGGCATCA +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWPELFW*VVPWAS
Trigger: TGATGCCCAAGGAACCACCCACCAAAAGAGTTCGGG...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTTCCACCTGCCAGTTCTaGCTTCCTCGGAGGCCGAAC +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVSTCQF*LPRRPN
Trigger: GTTCGGCCTCCGAGGAAGTCAGAACTGGCAGGTGGA...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGAGTCCTTGGTGTTTCTaGACAGCTCGATCCCTGAAG +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWSPWCF*TARSLK
Trigger: CTTCAGGGATCGAGCTGTTCAGAAACACCAAGGACT...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGATAATGAGGACTGCCTaGAGCCCCATTTGCTGCATC +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWIMRTA*SPICCI
Trigger: GATGCAGCAAATGGGGCTTCAGGCAGTCCTCATTAT...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTCCACACTCATACTGTaGTCTCCTGAAGGAGCAGTC +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWSTLIL*SPEGAV
Trigger: GACTGCTCCTTCAGGAGATCACAGTATGAGTGTGGA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGCTCTCTGAAGGGCACTaGAAAGCTGAGTCTTCTCTC +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWLSEGH*KAESSL
Trigger: GAGAGAAGACTCAGCTTTGCAGTGCCCTTCAGAGAG...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTGGGGCCTTCCACAGTaGGCCAAAAGCCACTCGACC +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRWGLPQ*AKSHST
Trigger: GGTCGAGTGGCTTTTGGCTCACTGTGGAAGGCCCCA...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGAGCATTAGGATGAAGTaGAAGGCTGTAGAGCCGCTT +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWSIRMK*KAVEPL
Trigger: AAGCGGCTCTACAGCCTTGCACTTCATCCTAATGCT...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTTACTTCTCTTCCTCGTaGAGGCTGGGAGGGCCCGGC +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSYFSSS*RLGGPG
Trigger: GCCGGGCCCTCCCAGCCTCCACGAGGAAGAGAAGTA...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTCTTGGGTTTGGGTATaGAGAATACTTGGAGAGGCC +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWSWVWV*RILGEA
Trigger: GGCCTCTCCAAGTATTCTCCATACCCAAACCCAAGA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTATGGTGGGTGGTTCCTTaGGCATCAGCCGGAGTAGGG +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVWWVVP*ASAGVG
Trigger: CCCTACTCCGGCTGATGCCCAAGGAACCACCCACCA...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTCGTCGATCAGTCCTTaGATCAGTACATCTTTTGCC +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWSSISP*ISTSFA
Trigger: GGCAAAAGATGTACTGATTCAAGGACTGATCGACGA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCTTCTGCCTTTGGTCTaGGAGGGGCCCTTCTTGGGT +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRLLPLV*EGPFLG
Trigger: ACCCAAGAAGGGCCCCTCTCAGACCAAAGGCAGAAG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGCGGACAGGAACTCCTaGAGCTGCAGTAGCCAACAC +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRADRNS*SCSSQH
Trigger: GTGTTGGCTACTGCAGCTGCAGGAGTTCCTGTCCGC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGTAGCACTCCAGTGCTaGAAGGAGGAGGTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRVALQC*KEEVQP
Trigger: TGGCTGGACCTCCTCCTTGCAGCACTGGAGTGCTAC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCCTTCTCCAGGAGCTTaGAGTCCTCTGGAGAGGCGA +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRPSPGA*SPLERR
Trigger: TCGCCTCTCCAGAGGACTGCAAGCTCCTGGAGAAGG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAAAAGTGGGAACGCAGTaGCAGGAAGGCCTCAGGGCT +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVKVGTQ*QEGLRA
Trigger: AGCCCTGAGGCCTTCCTGGCACTGCGTTCCCACTTT...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGACTCTCTGGCTCTTGTaGACGAATGTTGTAGTCTCT +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWTLWLL*TNVVVS
Trigger: AGAGACTACAACATTCGTGCACAAGAGCCAGAGAGT...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGATACTTGGAGAGGCCTaGGTCTCAATAAACATCGGA +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWILGEA*VSINIG
Trigger: TCCGATGTTTATTGAGACCCAGGCCTCTCCAAGTAT...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCCAGGCTTCTGCCTTTaGTCTGAGAGGGGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRPGFCL*SERGPS
Trigger: AGAAGGGCCCCTCTCAGACCAAAGGCAGAAGCCTGG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAAAGGGCCCCAGGCCTaGAGCACGAAGGTCACCCAA +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSKGPQA*STKVTQ
Trigger: TTGGGTGACCTTCGTGCTCCAGGCCTGGGGCCCTTT...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGGATATTGGGGTCTGTaGCCTGGTCCACCAAGCACT +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVGYWGL*PGPPST
Trigger: AGTGCTTGGTGGACCAGGCCACAGACCCCAATATCC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTGGCTCAGGCCCAGCTTaGAAGCCATCTGCAATGCAG +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSGSGPA*KPSAMQ
Trigger: CTGCATTGCAGATGGCTTTCAAGCTGGGCCTGAGCC...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTCTGGCGAGTGACATTTaGAGGGAGGTCAGCCTTCCG +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSLASDI*REVSLP
Trigger: CGGAAGGCTGACCTCCCTTCAAATGTCACTCGCCAG...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACGGCCTTGGAGAGGTaGTGGAATGCTCTCTGGTAC +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVTALER*WNALWY
Trigger: GTACCAGAGAGCATTCCATCACCTCTCCAAGGCCGT...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCTGCTGGCTGATCACTaGTGCTTGCCCCTCCTTCAA +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRLLADH*CLPLLQ
Trigger: TTGAAGGAGGGGCAAGCAGCAGTGATCAGCCAGCAG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTACCGCCAGTAGGTCAATaGTGCTCCCAGTCAGCCAAT +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVPPVGQ*CSQSAN
Trigger: ATTGGCTGACTGGGAGCAGCATTGACCTACTGGCGG...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGCTGATGCACAGCAGTaGATGGGAGCTGGCAAAGTG +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRADAQQ*MGAGKV
Trigger: CACTTTGCCAGCTCCCATGCACTGCTGTGCATCAGC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCTCTTCTCCAGCAACTaGCTCTCCCCCACCATGTTC +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRLFSSN*LSPTMF
Trigger: GAACATGGTGGGGGAGAGCCAGTTGCTGGAGAAGAG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTTGTTTTGCAATTATTaGGTCTTTCTGGGCCACAGC +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWLFCNY*VFLGHS
Trigger: GCTGTGGCCCAGAAAGACCCAATAATTGCAAAACAA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTGGCAACTTATTTCCTaGATGCAAGAGACAAAGGGT +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWWQLIS*MQETKG
Trigger: ACCCTTTGTCTCTTGCATCCAGGAAATAAGTTGCCA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGAAGTGTCAGGAAGTCTaGGTGTTGGCAACTTATTTC +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWKCQEV*VLATYF
Trigger: GAAATAAGTTGCCAACACCCAGACTTCCTGACACTT...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTTGGGGTCTGTGGCCTaGTCCACCAAGCACTTCACT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRLGSVA*STKHFT
Trigger: AGTGAAGTGCTTGGTGGACCAGGCCACAGACCCCAA...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTACTTTCTCCTTCAGGTaGGTCTCCAGCATGTCTCTG +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVTFSFR*VSSMSL
Trigger: CAGAGACATGCTGGAGACTCACCTGAAGGAGAAAGT...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGGCTAATATTTCTCTGTaGACTGCCCAGATATTGTGT +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWANISL*TAQILC
Trigger: ACACAATATCTGGGCAGTTCACAGAGAAATATTAGC...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCAGAAACCCAGTCCTTaGAGAGCAGGTCAGGATTGG +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRQKPSP*RAGQDW
Trigger: CCAATCCTGACCTGCTCTTCAAGGACTGGGTTTCTG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTTCAGGAACTGCGCTTTaGACTCACTCATCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSSGTAL*THSSRG
Trigger: CCCCCTGGATGAGTGAGTTCAAAGCGCAGTTCCTGA...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTCTGCAATGCCTGCACTaGAGAGCTAGTGCTCAGCAC +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSLQCLH*RASAQH
Trigger: GTGCTGAGCACTAGCTCTGCAGTGCAGGCATTGCAG...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGAAAGACTGCAGGCACTaGCTTTCCTCTGCAGGCACA +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRKDCRH*LSSAGT
Trigger: TGTGCCTGCAGAGGAAAGGCAGTGCCTGCAGTCTTT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGCTGAGCCAGTGCTTTaGATAAGGGCGAAAGACCTC +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRAEPVL*IRAKDL
Trigger: GAGGTCTTTCGCCCTTATGCAAAGCACTGGCTCAGC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAACTTGTCCAGGCTTCTaGCTTTGGTCTGAGAGGGGC +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTTCPGF*LWSERG
Trigger: GCCCCTCTCAGACCAAAGGCAGAAGCCTGGACAAGT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAGGAGAGGTGATGGAATaGTCTCTGGTACAGACCCGT +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVGEVME*SLVQTR
Trigger: ACGGGTCTGTACCAGAGAGCATTCCATCACCTCTCC...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCCTCAGGGCTGGTaGTCATCTTTACAAAGGCCC +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSRPQGW*SSLQRP
Trigger: GGGCCTTTGTAAAGATGAGCACCAGCCCTGAGGCCT...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCCTTCTCAGCTTCTGTaGGTTCACCATCCACCCACT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRPSQLL*VHHPPT
Trigger: AGTGGGTGGATGGTGAACCCACAGAAGCTGAGAAGG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACACCCCAGCAGGAAAGCTaGGTTTCCTCTTCAGCTGAC +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTPQQES*VSSSAD
Trigger: GTCAGCTGAAGAGGAAACCCAGCTTTCCTGCTGGGG...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGAGAGCAGGTCAGGATTaGAGAGCTGGTCTAAGGCGT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRRAGQD*RAGLRR
Trigger: ACGCCTTAGACCAGCTCTCCAATCCTGACCTGCTCT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGGAAGGCCTCAGGGCTaGTGCTCATCTTTACAAAGG +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRGRPQG*CSSLQR
Trigger: CCTTTGTAAAGATGAGCACCAGCCCTGAGGCCTTCC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGATGCACAGCAGTGCATaGGAGCTGGCAAAGTGGGAA +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRMHSSA*ELAKWE
Trigger: TTCCCACTTTGCCAGCTCCCATGCACTGCTGTGCAT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTTCCTGCCAAGGATATTaGGGTCTGTGGCCTGGTCCA +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSSCQGY*GLWPGP
Trigger: TGGACCAGGCCACAGACCCCAATATCCTTGGCAGGA...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGAGGCAGGCAGTGAATTaGGATGCATGCAGGGTAAGT +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRRQAVN*DACRVS
Trigger: ACTTACCCTGCATGCATCTCAATTCACTGCCTGCCT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAAGCATCTGCGTGGGTaGGGAACATCTGCTTACAGC +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSKHLRG*GTSAYS
Trigger: GCTGTAAGCAGATGTTCCTCACCCACGCAGATGCTT...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAATTAGCTGCTGGATCTaGAGTTGGGATCACCCAGAC +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVISCWI*SWDHPD
Trigger: GTCTGGGTGATCCCAACTTCAGATCCAGCAGCTAAT...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGACATCACACGCAAGTTaGAGCAGCACAGGAAACGTG +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRTSHAS*SSTGNV
Trigger: CACGTTTCCTGTGCTGCTTCAACTTGCGTGTGATGT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCCATCTCTAACTCCATaGTGTCATCCTGGGTCATGG +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRPSLTP*CHPGSW
Trigger: CCATGACCCAGGATGACATCATGGAGTTAGAGATGG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGCATCTCTATGTCTCATaGCTTGAAGAAAGTCTTTAC +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWHLYVS*LEESLY
Trigger: GTAAAGACTTTCTTCAAGTCATGAGACATAGAGATG...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTCTCTTCTATTTTACTaGGAAAGAAGCAGCGATTTG +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWSLLFY*ERSSDL
Trigger: CAAATCGCTGCTTCTTTCTCAGTAAAATAGAAGAGA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTCTGCAGGCAGCATCCTaGGAGAGAATGGCATTCATG +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSLQAAS*ERMAFM
Trigger: CATGAATGCCATTCTCTCTCAGGATGCTGCCTGCAG...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGAGGTCAGGCGGCACTTaGCTTTCCCTTCTTCTGAAA +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRRSGGT*LSLLLK
Trigger: TTTCAGAAGAAGGGAAAGTCAAGTGCCGCCTGACCT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGGGACTGGAAGAAACTaGGTAGCTGATCCAAACGCA +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRGTGRN*VADPNA
Trigger: TGCGTTTGGATCAGCTACTCAGTTTCTTCCAGTCCC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTTTTCCATGGTGTCAGTaGGCAGACCTGCACAAGAGC +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSFPWCQ*ADLHKS
Trigger: GCTCTTGTGCAGGTCTGCTCACTGACACCATGGAAA...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGAAAGCCATCTGCAATaGAGGAACGTAGGCTCTAAC +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVESHLQ*RNVGSN
Trigger: GTTAGAGCCTACGTTCCTGCATTGCAGATGGCTTTC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTCTGAGCAAGAATGCCTaGTGGCTGATCACTGCTGCT +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSLSKNA*WLITAA
Trigger: AGCAGCAGTGATCAGCCAGCAGGCATTCTTGCTCAG...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACATTGGCTGAGCAAGAATaGCTGCTGGCTGATCACTGC +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTLAEQE*LLADHC
Trigger: GCAGTGATCAGCCAGCAGGCATTCTTGCTCAGCCAA...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCCAGTAGGTCAATGCTaGTCCCAGTCAGCCAATCAA +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRPVGQC*SQSANQ
Trigger: TTGATTGGCTGACTGGGAGCAGCATTGACCTACTGG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGTGATCAGACCACTGTaGTGGATCTGGATATCAGGA +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVVIRPL*WIWISG
Trigger: TCCTGATATCCAGATCCAGCACAGTGGTCTGATCAC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTATTGTGCCCAAGAGAATaGTCTGGTCACAAGAGGCCT +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVLCPRE*SGHKRP
Trigger: AGGCCTCTTGTGACCAGAGCATTCTCTTGGGCACAA...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAAAAGCCCTCAGTGCATaGACCATGACCGTGCACATG +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTKALSA*TMTVHM
Trigger: CATGTGCACGGTCATGGTGCATGCACTGAGGGCTTT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAAGTTGTTTTGCTCTCTaGGGCAGAATCTGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTSCFAL*GRIWGP
Trigger: TGGGCCCCAGATTCTGCCCCAGAGAGCAAAACAACT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGGCCCTTCTTGGGTTTaGGTATGGAGAATACTTGGA +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVGPSWV*VWRILG
Trigger: TCCAAGTATTCTCCATACCCAAACCCAAGAAGGGCC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCCACTGTGCTGGATCTaGATATCAGGAAGATCGCCA +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRPLCWI*ISGRSP
Trigger: TGGCGATCTTCCTGATATCCAGATCCAGCACAGTGG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGCGTCTCCTGATAAAATaGTTCACTCCACATTTTACT +
Preference number: 4 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWRLLIK*FTPHFT
Trigger: AGTAAAATGTGGAGTGAACCATTTTATCAGGAGACG...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGTAAGGCCATCATGTaGCTGATCCAGCCAATGAAC +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVSKAIM*LIQPMN
Trigger: GTTCATTGGCTGGATCAGCCACATGATGGCCTTACT...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGAGCCGCTTGAAAAGTaGCTTGCTGTTTACTGGACT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRREPLEK*LAVYWT
Trigger: AGTCCAGTAAACAGCAAGTCACTTTTCAAGCGGCTC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAATGATGCGTCTTAGGTaGTCGATGGCATCACAGCAC +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTMMRLR*SMASQH
Trigger: GTGCTGTGATGCCATCGATCACCTAAGACGCATCAT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACACATACTGTGATCTCCTaGAGGAGCAGTCAGTCTCTC +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTHTVIS*RSSQSL
Trigger: GAGAGACTGACTGCTCCTTCAGGAGATCACAGTATG...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTGCACTTGTCTTCTGTaGGGCACTCTCTTCTACCTT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRCTCLL*GTLFYL
Trigger: AAGGTAGAAGAGAGTGCCTCACAGAAGACAAGTGCA...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGTGCTTCCATCCTCCTaGTCTCCAACAGTCTGTTTT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRVLPSS*SPTVCF
Trigger: AAAACAGACTGTTGGAGAGCAGGAGGATGGAAGCAC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGAGGACAGCAGTCTCATaGCAACGGAATGGTTCAATG +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRRTAVS*QRNGSM
Trigger: CATTGAACCATTCCGTTGGCATGAGACTGCTGTCCT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAGCACTGCCTTTCCTCTaGAGGCACAATGCCTTTATA +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVALPFL*RHNAFI
Trigger: TATAAAGGCATTGTGCCTGCAGAGGAAAGGCAGTGC...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCCAGTTCTGCAGAATTaGAGTTGCAAGCTTCAGTCC +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRPVLQN*SCKLQS
Trigger: GGACTGAAGCTTGCAACTGCAATTCTGCAGAACTGG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCACTTCCTCCAGTTCTaGAGAATTGCAGTTGCAAGC +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRHFLQF*RIAVAS
Trigger: GCTTGCAACTGCAATTCTGCAGAACTGGAGGAAGTG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAGCACAGTTGTTTTaGTCTCTGGGGCAGAATCTG +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVTAQLF*SLGQNL
Trigger: CAGATTCTGCCCCAGAGAGCAAAACAACTGTGCTGT...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAGTGTCCAAGTCACAGTaGCACAACAAGGTGAGGAGA +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTVSKSQ*HNKVRR
Trigger: TCTCCTCACCTTGTTGTGGCACTGTGACTTGGACAC...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGTAACAGTCAAGCGATaGCAGCTCCCAAAACTCCTT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRVTVKR*QLPKLL
Trigger: AAGGAGTTTTGGGAGCTGGCATCGCTTGACTGTTAC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTGCATGTTTCTCTGACTaGAGGCAGCATCCTGAGAGA +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSACFSD*RQHPER
Trigger: TCTCTCAGGATGCTGCCTGCAGTCAGAGAAACATGC...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTACACCAACTGCATTTTaGGACTATACTGAGGGAAGC +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVTPTAF*DYTEGS
Trigger: GCTTCCCTCAGTATAGTCCCAAAATGCAGTTGGTGT...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTATCAGACCACTGTGCTaGATCTGGATATCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVIRPLC*IWISGR
Trigger: TCTTCCTGATATCCAGATCCAGCACAGTGGTCTGAT...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTGTCTGTCACAACATCTaGGTATCTGCTGGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSVCHNI*VSAGPG
Trigger: ACCTGGACCAGCAGATACCCAGATGTTGTGACAGAC...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGCGGATGAAGCTTCATaGCCTAGATATAGCTCATCA +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVADEAS*PRYSSS
Trigger: TGATGAGCTATATCTAGGCCATGAAGCTTCATCCGC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTATCATCTCACTAGGATaGACTTCACCTAATACTCCC +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVIISLG*TSPNTP
Trigger: GGGAGTATTAGGTGAAGTTCATCCTAGTGAGATGAT...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACACTTGCAATAGACTaGAGGAAACTTGGCATCTGG +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVTLAID*RKLGIW
Trigger: CCAGATGCCAAGTTTCCTTCAGTCTATTGCAAGTGT...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTACTCTTCTCTTGCTGCTaGGGTGTTGTTTGCTTAATG +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVLFSCC*GVVCLM
Trigger: CATTAAGCAAACAACACCTCAGCAGCAAGAGAAGAG...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAGGCTGTAGAGCCGCTTaGAAAGTGACTTGCTGTTTA +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTGCRAA*KVTCCL
Trigger: TAAACAGCAAGTCACTTTTCAAGCGGCTCTACAGCC...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGGGATCCTTCTTCCCTaGATTCCTTGTAGATGTGAT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRGILLP*IPCRCD
Trigger: ATCACATCTACAAGGAATTCAGGGAAGAAGGATCCC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGGAAAGTGTCAAGATTaGGTTCACCTTGTTCTCCTC +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRGKCQD*VHLVLL
Trigger: GAGGAGAACAAGGTGAACTCAATCTTGACACTTTCC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTCATTCCCAAAGCTCTTaGCAAATTCTTTCCCAAACG +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVHSQSS*QILSQT
Trigger: CGTTTGGGAAAGAATTTGTCAAGAGCTTTGGGAATG...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACATCTCCATGGCCACCATaGAATTGTTCAGGTGTCTGT +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTSPWPP*NCSGVC
Trigger: ACAGACACCTGAACAATTTCATGGTGGCCATGGAGA...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTCTGCAGAATTGCAGTTaGAAGCTTCAGTCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSLQNCS*KLQSLV
Trigger: CACCAAGGACTGAAGCTTGCAACTGCAATTCTGCAG...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGATGTCATCCCAGATGTaGATTGGGTCTGTCACAACA +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRMSSQM*IGSVTT
Trigger: TGTTGTGACAGACCCAATGCACATCTGGGATGACAT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCGTCTCTGTGTTCTCTaGATTAGATCCGGAAAGTGT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRRLCVL*IRSGKC
Trigger: ACACTTTCCGGATCTAATGCAGAGAACACAGAGACG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGAAACCACTGATGAGTaGCAATCGTGTAGACTGCAA +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRETTDE*QSCRLQ
Trigger: TTGCAGTCTACACGATTGCCACTCATCAGTGGTTTC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGGCAATCTGGTTTCATaGCTCCAGAAATTCCGAATA +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVGNLVS*LQKFRI
Trigger: TATTCGGAATTTCTGGAGCCATGAAACCAGATTGCC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGCTACGGATCACATATaGCAGATACGTCTCCTGATA +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRATDHI*QIRLLI
Trigger: TATCAGGAGACGTATCTGCCATATGTGATCCGTAGC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTCGCTTCATCTCAATCTaGGGACGAATTGCTTTAAAT +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVRFISI*GRIALN
Trigger: ATTTAAAGCAATTCGTCCTCAGATTGAGATGAAGCG...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGATTTTGGGACTATACTaGGGGAAGCTGTCTATCTGT +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRILGLY*GKLSIC
Trigger: ACAGATAGACAGCTTCCCTCAGTATAGTCCCAAAAT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCTAATGCAATTCCAGTaGACTGGTCCTTTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRLMQFQ*TGPFSD
Trigger: ATCAGAGAAAGGACCAGTTCACTGGAATTGCATTAG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAGAGAAACCAGCTTTGTaGAGCTGTTTACAGGCTGAT +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTEKPAL*SCLQAD
Trigger: ATCAGCCTGTAAACAGCTTCACAAAGCTGGTTTCTC...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGAACAACATAGGACTCTaGGATAACTCCAGTGCATCT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRNNIGL*DNSSAS
Trigger: AGATGCACTGGAGTTATCTCAGAGTCCTATGTTGTT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGCCATACATTCATGTTaGTTGAGCTCATCCATCTCT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRAIHSC*LSSSIS
Trigger: AGAGATGGATGAGCTCAATCAACATGAATGTATGGC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAAAAGTCCGGTCCTACTaGCTTACAAGACATTCTCTG +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTKVRSY*LTRHSL
Trigger: CAGAGAATGTCTTGTAAGTCAGTAGGACCGGACTTT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAAGAGAATGGCATTCATaGCCTCAAAGATCTGCTCAA +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVREWHS*PQRSAQ
Trigger: TTGAGCAGATCTTTGAGGTCATGAATGCCATTCTCT...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGAAAACTAAGGAAATCTaGAATGCCTGCACTGCAGAG +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRKTKEI*NACTAE
Trigger: CTCTGCAGTGCAGGCATTGCAGATTTCCTTAGTTTT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCAACTCTGCATCTTCTaGCACAGTAAACGAAATCTG +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRQLCIF*HSKRNL
Trigger: CAGATTTCGTTTACTGTGGCAGAAGATGCAGAGTTG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTCTAATTAAACCTTGGTaGACCACAGCACTAATGCAA +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVLIKPW*TTALMQ
Trigger: TTGCATTAGTGCTGTGGTGCACCAAGGTTTAATTAG...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTCTTGGTTTAGCAGGGTaGAAATTAGCTGCTGGATCT +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSLGLAG*KLAAGS
Trigger: AGATCCAGCAGCTAATTTGCACCCTGCTAAACCAAG...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTCCTCTGCAGGCACAATaGCTTTATAAACCAAGGACA +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSPLQAQ*LYKPRT
Trigger: TGTCCTTGGTTTATAAAGGCATTGTGCCTGCAGAGG...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAAATCTGCAACATCTTTaGCAGCAAAGACAGCACAGT +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVNLQHL*QQRQHS
Trigger: ACTGTGCTGTCTTTGCTGGCAAAGATGTTGCAGATT...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTGAGTTCATTTCCTTCTaGAACACGGGAGCCATGAAA +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSEFISF*NTGAMK
Trigger: TTTCATGGCTCCCGTGTTGCAGAAGGAAATGAACTC...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTTTCACATACCAACTCTaGTATCACGTGTTTTCTCTC +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVFTYQL*YHVFSL
Trigger: GAGAGAAAACACGTGATAGCAGAGTTGGTATGTGAA...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCTGTACAGAACAACCTaGGCATCCTGCTTCATTTTA +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRLYRTT*ASCFIL
Trigger: TAAAATGAAGCAGGATGCGCAGGTTGTTCTGTACAG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTACACAAGTGCTGGATATaGTTCCATTTCTGCACTTGT +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVHKCWI*FHFCTC
Trigger: ACAAGTGCAGAAATGGAAGCATATCCAGCACTTGTG...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTTGTTAGTCAACCAGTaGATCAGCTGCATAACAAGC +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRLLVNQ*ISCITS
Trigger: GCTTGTTATGCAGCTGATCCACTGGTTGACTAACAA...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACACAAATGCTGGGAAGATaGTTCATAACCTGGACATCG +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTQMLGR*FITWTS
Trigger: CGATGTCCAGGTTATGAACCATCTTCCCAGCATTTG...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGAGAAGAATGATAGCTTaGCCCTTTAAGTGTAGACCC +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRRRMIA*PFKCRP
Trigger: GGGTCTACACTTAAAGGGCCAAGCTATCATTCTTCT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGAGGATGCTCAAAAATaGGGTTTAGATAATCTGGGC +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRREDAQK*GLDNLG
Trigger: GCCCAGATTATCTAAACCCCATTTTTGAGCATCCTC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGTGCCACTTTTCACTTaGTTATCCACCTCATCATCA +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRVPLFT*LSTSSS
Trigger: TGATGATGAGGTGGATAACCAAGTGAAAAGTGGCAC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAAGGAAGTCTGGGTGTTaGCAACTTATTTCCTGGATG +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTRKSGC*QLISWM
Trigger: CATCCAGGAAATAAGTTGCCAACACCCAGACTTCCT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAGCAGCTCCTTGTTCATaGCTTCATCCACAAATGTTA +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVAAPCS*LHPQML
Trigger: TAACATTTGTGGATGAAGCCATGAACAAGGAGCTGC...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAACACTTCCCTGTCAATaGACTCTTCATCCTCATCCA +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTTLPCQ*TLHPHP
Trigger: TGGATGAGGATGAAGAGTCCATTGACAGGGAAGTGT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
3UTR CAA 72 bp GAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATaGAAGTTAGTTAGGCCATTAGCATTGGTAACAAAT +
Preference number: 4 (lower is better)
Translates to: ELVHCLQYGFLG*KLVRPLALVTN
Trigger: ATTTGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGTCGGAACAGGTTTTCTaGATGGTTTATCATCTCACT +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRSEQVF*MVYHLT
Trigger: AGTGAGATGATAAACCATTCAGAAAACCTGTTCCGA...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTGACTCAACATCCTTTTaGAGGACCACTGGTTTAGAA +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSDSTSF*RTTGLE
Trigger: TTCTAAACCAGTGGTCCTTCAAAAGGATGTTGAGTC...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCAGGTTAATGAGAGCTaGAAAATCACTTGGTTTAGC +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRQVNES*KITWFS
Trigger: GCTAAACCAAGTGATTTTTCAGCTCTCATTAACCTG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAATCTTGAGAACTGTATaGATAGCTCTGAACTCCAGT +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVILRTV*IALNSS
Trigger: ACTGGAGTTCAGAGCTATTCATACAGTTCTCAAGAT...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAGTCTTCATTACTCCATaGAATTTTGGCAGCAGAAAG +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVVFITP*NFGSRK
Trigger: CTTTCTGCTGCCAAAATTTCATGGAGTAATGAAGAC...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAAGACATTCTCTGTaGCTTTTCAGTCCTTTTGTG +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVTRHSL*LFSPFV
Trigger: CACAAAAGGACTGAAAAGTCACAGAGAATGTCTTGT...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTGACTTTCCCTTCTTCTaGAAGCTACAACTGTTTCTG +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSDFPFF*KLQLFL
Trigger: CAGAAACAGTTGTAGCTTTCAGAAGAAGGGAAAGTC...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGGCAATCGTGTAGACTaGAAAATTAACTCATATGCA +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVGNRVD*KINSYA
Trigger: TGCATATGAGTTAATTTTGCAGTCTACACGATTGCC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAAAGAAGGGGATTTGTTaGCTGGCAGTAAAGGAACAA +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTKKGIC*LAVKEQ
Trigger: TTGTTCCTTTACTGCCAGGCAACAAATCCCCTTCTT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAAAGCTGAATCAATCTaGAACATCTTTGCCAGCAAA +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVKAESI*NIFASK
Trigger: TTTGCTGGCAAAGATGTTGCAGATTGATTCAGCTTT...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAGTGACACATGGACTCTaGCTAGCAATCCTTTTGAAA +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTVTHGL*LAILLK
Trigger: TTTCAAAAGGATTGCTAGGCAGAGTCCATGTGTCAC...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAGCAATCACATTTCTCTaGATGTGCTTAATCAGGGCT +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTAITFL*MCLIRA
Trigger: AGCCCTGATTAAGCACATGCAGAGAAATGTGATTGC...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACACTCTTCTCCCTTAGGTaGAATCACATTTCTCTGCAT +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTLFSLR*NHISLH
Trigger: ATGCAGAGAAATGTGATTGCACCTAAGGGAGAAGAG...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTATCCAGCCAATGAACTaGCAGCAAGGAATAGATGAA +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSIQPMN*QQGIDE
Trigger: TTCATCTATTCCTTGCTGGCAGTTCATTGGCTGGAT...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAATTCCACATTTGTATaGCTACACCACTTAGACAGT +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVNSTFV*LHHLDS
Trigger: ACTGTCTAAGTGGTGTAGCCATACAAATGTGGAATT...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGAGACTGAAGGAAACTTaGCATCTGGTAAACATGATC +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRRLKET*HLVNMI
Trigger: GATCATGTTTACCAGATGCCAAGTTTCCTTCAGTCT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTTATAAAAGAGTTCCATaGACTTGTGTCGACATTCTG +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVYKRVP*TCVDIL
Trigger: CAGAATGTCGACACAAGTCCATGGAACTCTTTTATA...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGCTTATCAGAGAAATaGCACAGTTGTATGCAGCAC +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSSLSEK*HSCMQH
Trigger: GTGCTGCATACAACTGTGCCATTTCTCTGATAAGCT...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCATGTTGGAGAAGGATaGGAAACAAATTCCACAACA +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRHVGEG*ETNSTT
Trigger: TGTTGTGGAATTTGTTTCCCATCCTTCTCCAACATG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAATCTGGGCTCATCCTaGTCATTTCAAGCAGAAAGT +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSNLGSS*SFQAES
Trigger: ACTTTCTGCTTGAAATGACCAGGATGAGCCCAGATT...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGACCCGTTTCTTTCATTaGCAACATGAGACTGACAAA +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRTRFFH*QHETDK
Trigger: TTTGTCAGTCTCATGTTGCCAATGAAAGAAACGGGT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTATCAGACTCTTTGGGCTaGTTCCCTCAAAATATTTTA +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVSDSLG*FPQNIL
Trigger: TAAAATATTTTGAGGGAATCAGCCCAAAGAGTCTGA...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTATTTCCTAGTTTGTCATaGAGAAATTTCATCCACGGT +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVFPSLS*RNFIHG
Trigger: ACCGTGGATGAAATTTCTTCATGACAAACTAGGAAA...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR TCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCAGAAAACAAGCTGCTaGAGAGTTGTTTTGCAATTA +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRQKTSC*RVVLQL
Trigger: TAATTGCAAAACAACTCTTCAGCAGCTTGTTTTCTG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAGTAAAGCAAGACACTTaGAATAGACTGAAGGAAACT +
Preference number: 4 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVVKQDT*NRLKET
Trigger: AGTTTCCTTCAGTCTATTGCAAGTGTCTTGCTTTAC...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTCGCTATGGGTTGCTATaGTTTCTAAAAAGAAAGCCA +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSRYGLL*FLKRKP
Trigger: TGGCTTTCTTTTTAGAAAGCATAGCAACCCATAGCG...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCATGTTCTCTGTAAATaGATCATGGCACAACTTAAG +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRHVLCK*IMAQLK
Trigger: CTTAAGTTGTGCCATGATGCATTTACAGAGAACATG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTACATTTCTCTGCATGTaGTTAATCAGGGCTATCATG +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSTFLCM*LIRAIM
Trigger: CATGATAGCCCTGATTAAGCACATGCAGAGAAATGT...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTTTGGGATGGAAGACATaGTTCATTAGAAAACGAAGC +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSLGWKT*FIRKRS
Trigger: GCTTCGTTTTCTAATGAAGCATGTCTTCCATCCCAA...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACATCATTTTTCAGGAACTaGGCTTTGAACTCACTCATC +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTSFFRN*ALNSLI
Trigger: GATGAGTGAGTTCAAAGCGCAGTTCCTGAAAAATGA...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGATTCAGGCAGTGGTTTaGTTTTTCCATCATATTGTC +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRIQAVV*FFHHIV
Trigger: GACAATATGATGGAAAAAGCAAACCACTGCCTGAAT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACATTCAATGATGTCATGTaGCAAGGACAGAACAAAGGT +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTFNDVM*QGQNKG
Trigger: ACCTTTGTTCTGTCCTTGCCACATGACATCATTGAA...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTACAGCTCTTTTGGGATaGAAGACATGCTTCATTAGA +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSTALLG*KTCFIR
Trigger: TCTAATGAAGCATGTCTTCCATCCCAAAAGAGCTGT...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCAAAATACATGGCACTaGTTATGTCACAATTTGGGT +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRQNTWH*LCHNLG
Trigger: ACCCAAATTGTGACATAACCAGTGCCATGTATTTTG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAATCGGTCCAATGTATTaGAAGGCAATCTGGTTTCAT +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTIGPMY*KAIWFH
Trigger: ATGAAACCAGATTGCCTTCCAATACATTGGACCGAT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGCTAAACTTAAAAAGTaGACTTCTATCTTGGGGGAA +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRAKLKK*TSILGE
Trigger: TTCCCCCAAGATAGAAGTCCACTTTTTAAGTTTAGC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGTACAGACTGTAACTTaGCGAGTCTACTTCTATATA +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRVQTVT*RVYFYI
Trigger: TATATAGAAGTAGACTCGCCAAGTTACAGTCTGTAC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGCGTATTTTATGTTGTaGATACCAATTCTTTTCCGT +
Preference number: 4 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVAYFML*IPILFR
Trigger: ACGGAAAAGAATTGGTATCCACAACATAAAATACGC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACACTAAGACTGTGCACTTaGTGTAATTGTACTTCTCTT +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTLRLCT*CNCTSL
Trigger: AAGAGAAGTACAATTACAGCAAGTGCACAGTCTTAG...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAAATGGCACAGTTGTATaGAGCACAATGATAAAGTCT +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTNGTVV*STMIKS
Trigger: AGACTTTATCATTGTGCTGCATACAACTGTGCCATT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACATTTCTCAGCATTGTCTaGTCAAAACTCTTCCAATCA +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTFLSIV*SKLFQS
Trigger: TGATTGGAAGAGTTTTGAGCAGACAATGCTGAGAAA...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGAACAGGTTTTCTGAATaGTTTATCATCTCACTAGGA +
Preference number: 4 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRNRFSE*FIISLG
Trigger: TCCTAGTGAGATGATAAACCATTCAGAAAACCTGTT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAATTCTAATTAAACCTTaGTGCACCACAGCACTAATG +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTILIKP*CTTALM
Trigger: CATTAGTGCTGTGGTGCACCAAGGTTTAATTAGAAT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAACTTCAACACATCAATaGCATCTACCACAATTCTAC +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTTSTHQ*HLPQFY
Trigger: GTAGAATTGTGGTAGATGCCATTGATGTGTTGAAGT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGAAGCTTCAAAATACATaGCACTGGTTATGTCACAAT +
Preference number: 4 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRKLQNT*HWLCHN
Trigger: ATTGTGACATAACCAGTGCCATGTATTTTGAAGCTT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CCA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTGTGATATTCAGGCAGTaGTTTGCTTTTTCCATCATA +
Preference number: 4 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSVIFRQ*FAFSII
Trigger: TATGATGGAAAAAGCAAACCACTGCCTGAATATCAC...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAGAAGTCAACATCTTTTaGATTTATAACCTTGCAAGG +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTEVNIF*IYNLAR
Trigger: CCTTGCAAGGTTATAAATGCAAAAGATGTTGACTTC...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAATAATTTCAAGGTTGTaGCTAAACACAGCTCTTTTG +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTIISRL*LNTALL
Trigger: CAAAAGAGCTGTGTTTAGGCACAACCTTGAAATTAT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR GCA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACACCTTTAAAAATCTTCTaGGCAATCTCAGAATATCTG +
Preference number: 4 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTPLKIF*AISEYL
Trigger: CAGATATTCTGAGATTGCGCAGAAGATTTTTAAAGG...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp CCTGCCCCAGACTACGAATCAGCTGGTAACTGGCCCCGGCAGCACTaGAGCGGTCTGCTGCGGACAGGAACTCCTGCAGCTGCAGTAGCC +
Preference number: 5 (lower is better)
Translates to: PAPDYESAGNWPRQH*SGLLRTGTPAAAVA
Trigger: GGCTACTGCAGCTGCAGGAGTTCCTGTCCGCAGCAGACCGCTGCAGTGCTGCCGGGGCCAGTTACCAGCTGATTCGTAGTCTGGGGCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp TGCTCAGCACGCACTCCTGCCCCAGACTACGAATCAGCTGGTAACTaGCCCCGGCAGCACTGCAGCGGTCTGCTGCGGACAGGAACTCCT +
Preference number: 5 (lower is better)
Translates to: CSARTPAPDYESAGN*PRQHCSGLLRTGTP
Trigger: AGGAGTTCCTGTCCGCAGCAGACCGCTGCAGTGCTGCCGGGGCCAGTTACCAGCTGATTCGTAGTCTGGGGCAGGAGTGCGTGCTGAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp CTGTCTCCAATCCCGAGGAGCCAGTGGCTGATGCACAGCAGTGCATaGGAGCTGGCAAAGTGGGAACGCAGTGCCAGGAAGGCCTCAGGG +
Preference number: 5 (lower is better)
Translates to: LSPIPRSQWLMHSSA*ELAKWERSARKASG
Trigger: CCCTGAGGCCTTCCTGGCACTGCGTTCCCACTTTGCCAGCTCCCATGCACTGCTGTGCATCAGCCACTGGCTCCTCGGGATTGGAGACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp ATCAGCCGGAGTAGGGCCTCTTCCAGAAGACGGATACCTCCCGGCTaGTGCAGACTAGCCAGGCATCCCACTCGAACTGAGGCTGGGTCA +
Preference number: 5 (lower is better)
Translates to: ISRSRASSRRRIPPG*CRLARHPTRTEAGS
Trigger: TGACCCAGCCTCAGTTCGAGTGGGATGCCTGGCTAGTCTGCAGCAGCCGGGAGGTATCCGTCTTCTGGAAGAGGCCCTACTCCGGCTGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp GTGTCTGTCTCCAATCCCGAGGAGCCAGTGGCTGATGCACAGCAGTaGATGGGAGCTGGCAAAGTGGGAACGCAGTGCCAGGAAGGCCTC +
Preference number: 5 (lower is better)
Translates to: VSVSNPEEPVADAQQ*MGAGKVGTQCQEGL
Trigger: GAGGCCTTCCTGGCACTGCGTTCCCACTTTGCCAGCTCCCATGCACTGCTGTGCATCAGCCACTGGCTCCTCGGGATTGGAGACAGACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp GCTGATGCACAGCAGTGCATGGGAGCTGGCAAAGTGGGAACGCAGTaGCAGGAAGGCCTCAGGGCTGGTGCTCATCTTTACAAAGGCCCG +
Preference number: 5 (lower is better)
Translates to: ADAQQCMGAGKVGTQ*QEGLRAGAHLYKGP
Trigger: CGGGCCTTTGTAAAGATGAGCACCAGCCCTGAGGCCTTCCTGGCACTGCGTTCCCACTTTGCCAGCTCCCATGCACTGCTGTGCATCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp GGGAGCTGGCAAAGTGGGAACGCAGTGCCAGGAAGGCCTCAGGGCTaGTGCTCATCTTTACAAAGGCCCGCTTTAAGAGGTCAGGCGGCA +
Preference number: 5 (lower is better)
Translates to: GSWQSGNAVPGRPQG*CSSLQRPALRGQAA
Trigger: TGCCGCCTGACCTCTTAAAGCGGGCCTTTGTAAAGATGAGCACCAGCCCTGAGGCCTTCCTGGCACTGCGTTCCCACTTTGCCAGCTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp AGACTGTGCACTTGCTGTAATTGTACTTCTCTTCCTCGTGGAGGCTaGGAGGGCCCGGCGCCCCGGAGCCAAAGCGTTGTTCTACTGCTC +
Preference number: 5 (lower is better)
Translates to: RLCTCCNCTSLPRGG*EGPAPRSQSVVLLL
Trigger: GAGCAGTAGAACAACGCTTTGGCTCCGGGGCGCCGGGCCCTCCCAGCCTCCACGAGGAAGAGAAGTACAATTACAGCAAGTGCACAGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp AGCAGCCTCATGGCCCCAGCAGGAAAGCTGGGTTTCCTCTTCAGCTaGCTGCACGGCCTTGGAGAGGTGATGGAATGCTCTCTGGTACAG +
Preference number: 5 (lower is better)
Translates to: SSLMAPAGKLGFLFS*LHGLGEVMECSLVQ
Trigger: CTGTACCAGAGAGCATTCCATCACCTCTCCAAGGCCGTGCAGTCAGCTGAAGAGGAAACCCAGCTTTCCTGCTGGGGCCATGAGGCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp AGCTGGCAAAGTGGGAACGCAGTGCCAGGAAGGCCTCAGGGCTGGTaGTCATCTTTACAAAGGCCCGCTTTAAGAGGTCAGGCGGCACTT +
Preference number: 5 (lower is better)
Translates to: SWQSGNAVPGRPQGW*SSLQRPALRGQAAL
Trigger: AAGTGCCGCCTGACCTCTTAAAGCGGGCCTTTGTAAAGATGAGCACCAGCCCTGAGGCCTTCCTGGCACTGCGTTCCCACTTTGCCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp ACCATGAAATTGTTCAGGTGTCTGTCTCCAATCCCGAGGAGCCAGTaGCTGATGCACAGCAGTGCATGGGAGCTGGCAAAGTGGGAACGC +
Preference number: 5 (lower is better)
Translates to: TMKLFRCLSPIPRSQ*LMHSSAWELAKWER
Trigger: GCGTTCCCACTTTGCCAGCTCCCATGCACTGCTGTGCATCAGCCACTGGCTCCTCGGGATTGGAGACAGACACCTGAACAATTTCATGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp AGGGCTCCCATCCTTCCCAAGTCCTGCCAAGGATATTGGGGTCTGTaGCCTGGTCCACCAAGCACTTCACTTGAGTCTCTTCTGAAAGCC +
Preference number: 5 (lower is better)
Translates to: RAPILPKSCQGYWGL*PGPPSTSLESLLKA
Trigger: GGCTTTCAGAAGAGACTCAAGTGAAGTGCTTGGTGGACCAGGCCACAGACCCCAATATCCTTGGCAGGACTTGGGAAGGATGGGAGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp GAAAGCTGGGTTTCCTCTTCAGCTGACTGCACGGCCTTGGAGAGGTaGTGGAATGCTCTCTGGTACAGACCCGTGATTACCGTCTCTGTG +
Preference number: 5 (lower is better)
Translates to: ESWVSSSADCTALER*WNALWYRPVITVSV
Trigger: CACAGAGACGGTAATCACGGGTCTGTACCAGAGAGCATTCCATCACCTCTCCAAGGCCGTGCAGTCAGCTGAAGAGGAAACCCAGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp GTGTCAGTGAGCAGACCTGCACAAGAGCGGAAAGCCCTCAGTGCATaGACCATGACCGTGCACATGAGACCCGTTTCTTTCATTGGCAAC +
Preference number: 5 (lower is better)
Translates to: VSVSRPAQERKALSA*TMTVHMRPVSFIGN
Trigger: GTTGCCAATGAAAGAAACGGGTCTCATGTGCACGGTCATGGTGCATGCACTGAGGGCTTTCCGCTCTTGTGCAGGTCTGCTCACTGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp CATGGTGTCAGTGAGCAGACCTGCACAAGAGCGGAAAGCCCTCAGTaGATGCACCATGACCGTGCACATGAGACCCGTTTCTTTCATTGG +
Preference number: 5 (lower is better)
Translates to: HGVSEQTCTRAESPQ*MHHDRAHETRFFHW
Trigger: CCAATGAAAGAAACGGGTCTCATGTGCACGGTCATGGTGCATGCACTGAGGGCTTTCCGCTCTTGTGCAGGTCTGCTCACTGACACCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp GGTCACACAGTCCTCCAAAACCAAAGGCTAATTCCAGGAGTCCATTaGCTAGGCTCTTACAGCTGGGGTCCAAAGACTGCAGGCACTGCC +
Preference number: 5 (lower is better)
Translates to: GHTVLQNQRLIPGVH*LGSYSWGPKTAGTA
Trigger: GGCAGTGCCTGCAGTCTTTGGACCCCAGCTGTAAGAGCCTAGCCAATGGACTCCTGGAATTAGCCTTTGGTTTTGGAGGACTGTGTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTTGCCCCGAACTCTTTaGGTGGGTGGTTCCTTGGGC +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWLPRTL*VGGSLG
Trigger: GCCCAAGGAACCACCCACCAAAAGAGTTCGGGGCAA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp GGGGTCTGTGGCCTGGTCCACCAAGCACTTCACTTGAGTCTCTTCTaGAAGCCCACTCTCTGGCTCTTGTGCACGAATGTTGTAGTCTCT +
Preference number: 5 (lower is better)
Translates to: GVCGLVHQALHLSLF*KPTLWLLCTNVVVS
Trigger: AGAGACTACAACATTCGTGCACAAGAGCCAGAGAGTGGGCTTTCAGAAGAGACTCAAGTGAAGTGCTTGGTGGACCAGGCCACAGACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp CAAGTTGAAGCAGCACAGGAAACGTGTGCTTATAAAGCTGGTACATaGGCGGCAACCCCTGACCTTCAGGCATCTGAGTCGCTCTTCCCA +
Preference number: 5 (lower is better)
Translates to: QVEAAQETCAYKAGT*AATPDLQASESLFP
Trigger: TGGGAAGAGCGACTCAGATGCCTGAAGGTCAGGGGTTGCCGCCCATGTACCAGCTTTATAAGCACACGTTTCCTGTGCTGCTTCAACTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp AACCAAAGGCTAATTCCAGGAGTCCATTGGCTAGGCTCTTACAGCTaGGGTCCAAAGACTGCAGGCACTGCCTTTCCTCTGCAGGCACAA +
Preference number: 5 (lower is better)
Translates to: NQRLIPGVHWLGSYS*GPKTAGTAFPLQAQ
Trigger: TTGTGCCTGCAGAGGAAAGGCAGTGCCTGCAGTCTTTGGACCCCAGCTGTAAGAGCCTAGCCAATGGACTCCTGGAATTAGCCTTTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGAGCACCCAGGACCTCTaGTCCTTGCACAGTCTCCTT +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWSTQDL*SLHSLL
Trigger: AAGGAGACTGTGCAAGGACAAGAGGTCCTGGGTGCT...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp GTCCAAAGTCAATTCCAATCACACTGCCTGTCTCCATGGCCACCATaGAATTGTTCAGGTGTCTGTCTCCAATCCCGAGGAGCCAGTGGC +
Preference number: 5 (lower is better)
Translates to: VQSQFQSHCLSPWPP*NCSGVCLQSRGASG
Trigger: GCCACTGGCTCCTCGGGATTGGAGACAGACACCTGAACAATTTCATGGTGGCCATGGAGACAGGCAGTGTGATTGGAATTGACTTTGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp TCACAGTGCCACAACAAGGTGAGGAGAGAGCGATCTACAAATGCCTaGCGAGTGACATTTGAAGGGAGGTCAGCCTTCCGGAACATTGTG +
Preference number: 5 (lower is better)
Translates to: SQCHNKVRRERSTNA*RVTFEGRSAFRNIV
Trigger: CACAATGTTCCGGAAGGCTGACCTCCCTTCAAATGTCACTCGCCAGGCATTTGTAGATCGCTCTCTCCTCACCTTGTTGTGGCACTGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp TGTCCAGGCTTCTGCCTTTGGTCTGAGAGGGGCCCTTCTTGGGTTTaGGTATGGAGAATACTTGGAGAGGCCTGGGTCTCAATAAACATC +
Preference number: 5 (lower is better)
Translates to: CPGFCLWSERGPSWV*VWRILGEAWVSINI
Trigger: GATGTTTATTGAGACCCAGGCCTCTCCAAGTATTCTCCATACCCAAACCCAAGAAGGGCCCCTCTCAGACCAAAGGCAGAAGCCTGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGGCTGATCACTGCTGCTaGCCCCTCCTTCAAATGTGT +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWADHCC*PLLQMC
Trigger: ACACATTTGAAGGAGGGGCAAGCAGCAGTGATCAGC...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp GTTTTGCAATTATTGGGTCTTTCTGGGCCACAGCCTGCAAGGGGGTaGTCAGACCACTGTGCTGGATCTGGATATCAGGAAGATCGCCAT +
Preference number: 5 (lower is better)
Translates to: VLQLLGLSGPQPARG*SDHCAGSGYQEDRH
Trigger: ATGGCGATCTTCCTGATATCCAGATCCAGCACAGTGGTCTGATCACCCCCTTGCAGGCTGTGGCCCAGAAAGACCCAATAATTGCAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp TACCGTCTCTGTGTTCTCTGCATTAGATCCGGAAAGTGTCAAGATTaGGTTCACCTTGTTCTCCTCCAGGTCAGACAGGCAGGCTGGCTC +
Preference number: 5 (lower is better)
Translates to: YRLCVLCIRSGKCQD*VHLVLLQVRQAGWL
Trigger: GAGCCAGCCTGCCTGTCTGACCTGGAGGAGAACAAGGTGAACTCAATCTTGACACTTTCCGGATCTAATGCAGAGAACACAGAGACGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp TGTTTCTCTGACTGCAGGCAGCATCCTGAGAGAGAATGGCATTCATaGCCTCAAAGATCTGCTCAATGCGCTGGTCTTGACGGAGGTCCT +
Preference number: 5 (lower is better)
Translates to: CFSDCRQHPEREWHS*PQRSAQCAGLDGGP
Trigger: AGGACCTCCGTCAAGACCAGCGCATTGAGCAGATCTTTGAGGTCATGAATGCCATTCTCTCTCAGGATGCTGCCTGCAGTCAGAGAAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp CCCACTCGAACTGAGGCTGGGTCAAGTGTCAGGAAGTCTGGGTGTTaGCAACTTATTTCCTGGATGCAAGAGACAAAGGGTGGAAAGAAC +
Preference number: 5 (lower is better)
Translates to: PTRTEAGSSVRKSGC*QLISWMQETKGGKN
Trigger: GTTCTTTCCACCCTTTGTCTCTTGCATCCAGGAAATAAGTTGCCAACACCCAGACTTCCTGACACTTGACCCAGCCTCAGTTCGAGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGGTCTTCTGCAGCTCCTaGTTCATGGCTTCATCCACA +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWVFCSS*FMASST
Trigger: TGTGGATGAAGCCATGAACAAGGAGCTGCAGAAGAC...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTCAGAAACCCAGTCCTaGAAGAGCAGGTCAGGATTG +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWSETQS*KSRSGL
Trigger: CAATCCTGACCTGCTCTTCAAGGACTGGGTTTCTGA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp TCCAATCAAAGGAGGGTTCCTTCACAAAAATTTCCATGGTGTCAGTaGGCAGACCTGCACAAGAGCGGAAAGCCCTCAGTGCATGCACCA +
Preference number: 5 (lower is better)
Translates to: SNQRRVPSQKFPWCQ*ADLHKSGKPSVHAP
Trigger: TGGTGCATGCACTGAGGGCTTTCCGCTCTTGTGCAGGTCTGCTCACTGACACCATGGAAATTTTTGTGAAGGAACCCTCCTTTGATTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp CTGAAGGAAACTTGGCATCTGGTAAACATGATCCTCAGAAGCATCTaGGTGGGTGAGGAACATCTGCTTACAGCGCTGAATGAGCTCCAC +
Preference number: 5 (lower is better)
Translates to: LKETWHLVNMILRSI*VGEEHLLTALNELH
Trigger: GTGGAGCTCATTCAGCGCTGTAAGCAGATGTTCCTCACCCACGCAGATGCTTCTGAGGATCATGTTTACCAGATGCCAAGTTTCCTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp AGGTCTCTGAAGAGAAGACGGTGTGATCCGCCAGTAGGTCAATGCTaGTCCCAGTCAGCCAATCAAATGAGCTCCTTTCAACTGAAGCTT +
Preference number: 5 (lower is better)
Translates to: RSLKRRRCDPPVGQC*SQSANQMSSFQLKL
Trigger: AAGCTTCAGTTGAAAGGAGCTCATTTGATTGGCTGACTGGGAGCAGCATTGACCTACTGGCGGATCACACCGTCTTCTCTTCAGAGACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp ACAAGGTCTCTGAAGAGAAGACGGTGTGATCCGCCAGTAGGTCAATaGTGCTCCCAGTCAGCCAATCAAATGAGCTCCTTTCAACTGAAG +
Preference number: 5 (lower is better)
Translates to: TRSLKRRRCDPPVGQ*CSQSANQMSSFQLK
Trigger: CTTCAGTTGAAAGGAGCTCATTTGATTGGCTGACTGGGAGCAGCATTGACCTACTGGCGGATCACACCGTCTTCTCTTCAGAGACCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp CTGAAGAGTTGTTTTGCAATTATTGGGTCTTTCTGGGCCACAGCCTaGAAGGGGGTGATCAGACCACTGTGCTGGATCTGGATATCAGGA +
Preference number: 5 (lower is better)
Translates to: LKSCFAIIGSFWATA*KGVIRPLCWIWISG
Trigger: TCCTGATATCCAGATCCAGCACAGTGGTCTGATCACCCCCTTGCAGGCTGTGGCCCAGAAAGACCCAATAATTGCAAAACAACTCTTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp TGTCATCCCAGATGTGCATTGGGTCTGTCACAACATCTGGGTATCTaGTGGTCCAGGTTTTTAGAAGTCTCCTTAGGGGACCCAGAGATG +
Preference number: 5 (lower is better)
Translates to: CHPRCALGLSQHLGI*WSRFLEVSLGDPEM
Trigger: CATCTCTGGGTCCCCTAAGGAGACTTCTAAAAACCTGGACCAGCAGATACCCAGATGTTGTGACAGACCCAATGCACATCTGGGATGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp AAGATTTGTATTACACAAGTCCTTCTCCAGGAGCTTGCAGTCCTCTaGAGAGGCGATGAGCAGGGTTGTGGTGAATTCCATGATCCGGAC +
Preference number: 5 (lower is better)
Translates to: KICITQVLLQELAVL*RGDEQGCGEFHDPD
Trigger: GTCCGGATCATGGAATTCACCACAACCCTGCTCATCGCCTCTCCAGAGGACTGCAAGCTCCTGGAGAAGGACTTGTGTAATACAAATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp CTCCTTTCAACTGAAGCTTGTGTTGGAGTGAAATCATATTGTTGTTaGGTGGCCCGCACTTGTCCAGGCTTCTGCCTTTGGTCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: LLSTEACVGVKSYCC*VARTCPGFCLWSER
Trigger: CCTCTCAGACCAAAGGCAGAAGCCTGGACAAGTGCGGGCCACCCAACAACAATATGATTTCACTCCAACACAAGCTTCAGTTGAAAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGGTTCATAGAGCTGCCTaGTCACTTGATCCACATCAC +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWVHRAA*SLDPHH
Trigger: GTGATGTGGATCAAGTGACAAGGCAGCTCTATGAAC...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGAAGAGTTCCATGGACTaGTGTCGACATTCTGTCTGG +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWKSSMD*CRHSVW
Trigger: CCAGACAGAATGTCGACACAAGTCCATGGAACTCTT...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTCTGCAGAATTGCAGTaGCAAGCTTCAGTCCTTGGT +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWSAELQ*QASVLG
Trigger: ACCAAGGACTGAAGCTTGCAACTGCAATTCTGCAGA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTTCTACCTTTCGGAGTaGTTGGTCACAGAAGCCTAC +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWFYLSE*LVTEAY
Trigger: GTAGGCTTCTGTGACCAACAACTCCGAAAGGTAGAA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGATGGCCACCATGAAATaGTTCAGGTGTCTGTCTCCA +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWMATMK*FRCLSP
Trigger: TGGAGACAGACACCTGAACAATTTCATGGTGGCCAT...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGTCCTGCCAAGGATATaGGGGTCTGTGGCCTGGTCC +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRVLPRI*GSVAWS
Trigger: GGACCAGGCCACAGACCCCAATATCCTTGGCAGGAC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp AGAATGGCATTCATGACCTCAAAGATCTGCTCAATGCGCTGGTCTTaGCGGAGGTCCTCACCACCTTTTACCAGGAACGGGTATTCCTTT +
Preference number: 5 (lower is better)
Translates to: RMAFMTSKICSMRWS*RRSSPPFTRNGYSF
Trigger: AAAGGAATACCCGTTCCTGGTAAAAGGTGGTGAGGACCTCCGTCAAGACCAGCGCATTGAGCAGATCTTTGAGGTCATGAATGCCATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp AAAGACATCCAGATAAATGACAGGCTTCATCTCTCTGAAGGGCACTaGAAAGCTGAGTCTTCTCTCCGCATCCCACGCCACGTACTTCTT +
Preference number: 5 (lower is better)
Translates to: KDIQINDRLHLSEGH*KAESSLRIPRHVLL
Trigger: AAGAAGTACGTGGCGTGGGATGCGGAGAGAAGACTCAGCTTTGCAGTGCCCTTCAGAGAGATGAAGCCTGTCATTTATCTGGATGTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp CCTTCTGGGCAGCCCGAGAAAGTGCAGACAATCCCCAGTGGCTCTTaGTTTCATCTGATAAGGTTGAAGTATTCAGATATCCATCAAGGC +
Preference number: 5 (lower is better)
Translates to: PSGQPEKVQTIPSGS*FHLIRLKYSDIHQG
Trigger: GCCTTGATGGATATCTGAATACTTCAACCTTATCAGATGAAACCAAGAGCCACTGGGGATTGTCTGCACTTTCTCGGGCTGCCCAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp AGGGGCCCTTCTTGGGTTTGGGTATGGAGAATACTTGGAGAGGCCTaGGTCTCAATAAACATCGGAGTAAGAACAGTACTACGAAAACGC +
Preference number: 5 (lower is better)
Translates to: RGPSWVWVWRILGEA*VSINIGVRTVLRKR
Trigger: GCGTTTTCGTAGTACTGTTCTTACTCCGATGTTTATTGAGACCCAGGCCTCTCCAAGTATTCTCCATACCCAAACCCAAGAAGGGCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp CATCCCAGATGTGCATTGGGTCTGTCACAACATCTGGGTATCTGCTaGTCCAGGTTTTTAGAAGTCTCCTTAGGGGACCCAGAGATGATA +
Preference number: 5 (lower is better)
Translates to: HPRCALGLSQHLGIC*SRFLEVSLGDPEMI
Trigger: TATCATCTCTGGGTCCCCTAAGGAGACTTCTAAAAACCTGGACCAGCAGATACCCAGATGTTGTGACAGACCCAATGCACATCTGGGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp AGGTCCTCACCACCTTTTACCAGGAACGGGTATTCCTTTTCATCATaGCCTCGAATAACAATGCGCTTTGGCTTCCTCAAGGAGAGCATC +
Preference number: 5 (lower is better)
Translates to: RSSPPFTRNGYSFSS*PRITMRFGFLKESI
Trigger: GATGCTCTCCTTGAGGAAGCCAAAGCGCATTGTTATTCGAGGCCATGATGAAAAGGAATACCCGTTCCTGGTAAAAGGTGGTGAGGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp CTGAGGGAAGCTGTCTATCTGTACCACCATGAGATGTTCCAGTACTaGAGTATATACCTCCGGAACCGTGTCAAGGTAAAGCAAGACACT +
Preference number: 5 (lower is better)
Translates to: LREAVYLYHHEMFQY*SIYLRNRVKVKQDT
Trigger: AGTGTCTTGCTTTACCTTGACACGGTTCCGGAGGTATATACTCCAGTACTGGAACATCTCATGGTGGTACAGATAGACAGCTTCCCTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp AACAGTCAAGCGATGCCAGCTCCCAAAACTCCTTCTCAGCTTCTGTaGGTTCACCATCCACCCACTCCAGTTTATTTAAAGCCTCATCAT +
Preference number: 5 (lower is better)
Translates to: NSQAMPAPKTPSQLL*VHHPPTPVYLKPHH
Trigger: ATGATGAGGCTTTAAATAAACTGGAGTGGGTGGATGGTGAACCCACAGAAGCTGAGAAGGAGTTTTGGGAGCTGGCATCGCTTGACTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp GACTATACTGAAGCTCCAGGACCGTCTTCTGCAGCTCCTTGTTCATaGCTTCATCCACAAATGTTAGCAGAGATTGGTTGCCTTCTCCTT +
Preference number: 5 (lower is better)
Translates to: DYTEAPGPSSAAPCS*LHPQMLAEIGCLLL
Trigger: AAGGAGAAGGCAACCAATCTCTGCTAACATTTGTGGATGAAGCCATGAACAAGGAGCTGCAGAAGACGGTCCTGGAGCTTCAGTATAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAAAGAGCAGGTCAGGATaGGAGAGCTGGTCTAAGGCG +
Preference number: 5 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVKSRSG*ESWSKA
Trigger: CGCCTTAGACCAGCTCTCCAATCCTGACCTGCTCTT...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp GCATTTTGGGACTATACTGAGGGAAGCTGTCTATCTGTACCACCATaGGATGTTCCAGTACTGGAGTATATACCTCCGGAACCGTGTCAA +
Preference number: 5 (lower is better)
Translates to: AFWDYTEGSCLSVPP*DVPVLEYIPPEPCQ
Trigger: TTGACACGGTTCCGGAGGTATATACTCCAGTACTGGAACATCTCATGGTGGTACAGATAGACAGCTTCCCTCAGTATAGTCCCAAAATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp TCAGCCAATCAAATGAGCTCCTTTCAACTGAAGCTTGTGTTGGAGTaGAATCATATTGTTGTTGGGTGGCCCGCACTTGTCCAGGCTTCT +
Preference number: 5 (lower is better)
Translates to: SANQMSSFQLKLVLE*NHIVVGWPALVQAS
Trigger: AGAAGCCTGGACAAGTGCGGGCCACCCAACAACAATATGATTTCACTCCAACACAAGCTTCAGTTGAAAGGAGCTCATTTGATTGGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp ACCACAATTCTACTAAAGAACTCTTTCAGTGTGTCCAAGTCACAGTaGCACAACAAGGTGAGGAGAGAGCGATCTACAAATGCCTGGCGA +
Preference number: 5 (lower is better)
Translates to: TTILLKNSFSVSKSQ*HNKVRRERSTNAWR
Trigger: TCGCCAGGCATTTGTAGATCGCTCTCTCCTCACCTTGTTGTGGCACTGTGACTTGGACACACTGAAAGAGTTCTTTAGTAGAATTGTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp TTAAAAATCTTCTGCGCAATCTCAGAATATCTGCCTGGCTCGGAGTaGCACTTTTCACTTGGTTATCCACCTCATCATCAGGAAGGCCCA +
Preference number: 5 (lower is better)
Translates to: LKIFCAISEYLPGSE*HFSLGYPPHHQEGP
Trigger: TGGGCCTTCCTGATGATGAGGTGGATAACCAAGTGAAAAGTGGCACTCCGAGCCAGGCAGATATTCTGAGATTGCGCAGAAGATTTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp CTCAAGTTCTTTCCATTTAGAGAGGTTGTTGTAACAGTCAAGCGATaGCAGCTCCCAAAACTCCTTCTCAGCTTCTGTGGGTTCACCATC +
Preference number: 5 (lower is better)
Translates to: LKFFPFREVVVTVKR*QLPKLLLSFCGFTI
Trigger: GATGGTGAACCCACAGAAGCTGAGAAGGAGTTTTGGGAGCTGGCATCGCTTGACTGTTACAACAACCTCTCTAAATGGAAAGAACTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp TTACTGAGAAAGAAGCAGCGATTTGTGATGATGTCATCCCAGATGTaGATTGGGTCTGTCACAACATCTGGGTATCTGCTGGTCCAGGTT +
Preference number: 5 (lower is better)
Translates to: LLRKKQRFVMMSSQM*IGSVTTSGYLLVQV
Trigger: AACCTGGACCAGCAGATACCCAGATGTTGTGACAGACCCAATGCACATCTGGGATGACATCATCACAAATCGCTGCTTCTTTCTCAGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp CACATGAGACCCGTTTCTTTCATTGGCAACATGAGACTGACAAATTaGCGGGTTAGACGAAAAGGCATCAACTCAGGGACTGGAAGAAAC +
Preference number: 5 (lower is better)
Translates to: HMRPVSFIGNMRLTN*RVRRKGINSGTGRN
Trigger: GTTTCTTCCAGTCCCTGAGTTGATGCCTTTTCGTCTAACCCGCCAATTTGTCAGTCTCATGTTGCCAATGAAAGAAACGGGTCTCATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGGGCCCTTCTTGGGTTaGGGTATGGAGAATACTTGG +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRGPFLG*GMENTW
Trigger: CCAAGTATTCTCCATACCCAAACCCAAGAAGGGCCC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGAAATCATATTGTTGTaGGGTGGCCCGCACTTGTCC +
Preference number: 5 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVEIILL*GGPHLS
Trigger: GGACAAGTGCGGGCCACCCAACAACAATATGATTTC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp TCCTCAGAAGCATCTGCGTGGGTGAGGAACATCTGCTTACAGCGCTaGATGAGCTCCACGTACATGAAGTCAACATCTTTTGCATTTATA +
Preference number: 5 (lower is better)
Translates to: SSEASAWVRNICLQR*MSSTYMKSTSFAFI
Trigger: TATAAATGCAAAAGATGTTGACTTCATGTACGTGGAGCTCATTCAGCGCTGTAAGCAGATGTTCCTCACCCACGCAGATGCTTCTGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp CCTAGGAAGAATCTCCCTGCAAAACTCCACCAGGTTAATGAGAGCTaGAAAATCACTTGGTTTAGCAGGGTGCAAATTAGCTGCTGGATC +
Preference number: 5 (lower is better)
Translates to: PRKNLPAKLHQVNES*KITWFSRVQISCWI
Trigger: GATCCAGCAGCTAATTTGCACCCTGCTAAACCAAGTGATTTTTCAGCTCTCATTAACCTGGTGGAGTTTTGCAGGGAGATTCTTCCTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp TGCATGTGCTTAATCAGGGCTATCATGGGAGCCATACATTCATGTTaGTTGAGCTCATCCATCTCTAACTCCATGATGTCATCCTGGGTC +
Preference number: 5 (lower is better)
Translates to: CMCLIRAIMGAIHSC*LSSSISNSMMSSWV
Trigger: GACCCAGGATGACATCATGGAGTTAGAGATGGATGAGCTCAATCAACATGAATGTATGGCTCCCATGATAGCCCTGATTAAGCACATGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp GAGAGCATCACTTTTACCCGCTCATCAAATCCAGAGATCCGCACGTaGTATTCAGGCAGTGGTTTGCTTTTTCCATCATATTGTCCAGGA +
Preference number: 5 (lower is better)
Translates to: ESITFTRSSNPEIRT*YSGSGLLFPSYCPG
Trigger: TCCTGGACAATATGATGGAAAAAGCAAACCACTGCCTGAATATCACGTGCGGATCTCTGGATTTGATGAGCGGGTAAAAGTGATGCTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp TCCACCAGGTTAATGAGAGCTGAAAAATCACTTGGTTTAGCAGGGTaGAAATTAGCTGCTGGATCTGAAGTTGGGATCACCCAGACATCA +
Preference number: 5 (lower is better)
Translates to: STRLMRAEKSLGLAG*KLAAGSEVGITQTS
Trigger: TGATGTCTGGGTGATCCCAACTTCAGATCCAGCAGCTAATTTGCACCCTGCTAAACCAAGTGATTTTTCAGCTCTCATTAACCTGGTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp GCTCCTTGTTCATGGCTTCATCCACAAATGTTAGCAGAGATTGGTTaGCTTCTCCTTGAAGCAGGAGCTTTAGTTTGCTACGGATCACAT +
Preference number: 5 (lower is better)
Translates to: APCSWLHPQMLAEIG*LLLEAGALVCYGSH
Trigger: ATGTGATCCGTAGCAAACTAAAGCTCCTGCTTCAAGGAGAAGGCAACCAATCTCTGCTAACATTTGTGGATGAAGCCATGAACAAGGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp TATTGTGTAGACAGCATTGCCGAATTCAGGAGCAAACTCACAAGATaGTCACACAGTCCTCCAAAACCAAAGGCTAATTCCAGGAGTCCA +
Preference number: 5 (lower is better)
Translates to: YCVDSIAEFRSKLTR*SHSPPKPKANSRSP
Trigger: TGGACTCCTGGAATTAGCCTTTGGTTTTGGAGGACTGTGTGACCATCTTGTGAGTTTGCTCCTGAATTCGGCAATGCTGTCTACACAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp TGTTGTACTGCAATAGCTTCCTCTTTGTCCAGTAAGGCCATCATGTaGCTGATCCAGCCAATGAACTGCCAGCAAGGAATAGATGAAATC +
Preference number: 5 (lower is better)
Translates to: CCTAIASSLSSKAIM*LIQPMNCQQGIDEI
Trigger: GATTTCATCTATTCCTTGCTGGCAGTTCATTGGCTGGATCAGCCACATGATGGCCTTACTGGACAAAGAGGAAGCTATTGCAGTACAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACACTGCTGGATCTGAAGTaGGGATCACCCAGACATCAG +
Preference number: 5 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTLLDLK*GSPRHQ
Trigger: CTGATGTCTGGGTGATCCCAACTTCAGATCCAGCAG...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp GCTGTCAGCGAAGGTCTAGGAGGTCCTCTCGGAGACAGAATGCTTTATGATTGGTTCTCACTGACTATATaGACTGTAGAACAGTACTCA +
Preference number: 5 (lower is better)
Translates to: AVSEGLGGPLGDRMLYDWFSLTI*TVEQYS
Trigger: TGAGTACTGTTCTACAGTCAATATAGTCAGTGAGAA...CCAATCATAAAGCATTCTGTCTCCGAGAGGACCTCCTAGACCTTCGCTGACAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTTTCAGGAACTGCGCTTaGAACTCACTCATCCAGGGG +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSFRNCA*NSLIQG
Trigger: CCCCTGGATGAGTGAGTTCAAAGCGCAGTTCCTGAA...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTGAGGTCAGGCGGCACTaGACTTTCCCTTCTTCTGAA +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSEVRRH*TFPSSE
Trigger: TTCAGAAGAAGGGAAAGTCAAGTGCCGCCTGACCTC...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTCCCACTCTCTGGCTCTaGTGCACGAATGTTGTAGTC +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSPTLWL*CTNVVV
Trigger: GACTACAACATTCGTGCACAAGAGCCAGAGAGTGGG...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp CAGTCTCATGCCAACGGAATGGTTCAATGCTGTAGACTGAGATGGTaGTATAACATGAGAGAAACCAGCTTTGTGAAGCTGTTTACAGGC +
Preference number: 5 (lower is better)
Translates to: QSHANGMVQCCRLRW*YNMRETSFVKLFTG
Trigger: GCCTGTAAACAGCTTCACAAAGCTGGTTTCTCTCATGTTATATCACCATCTCAGTCTACAGCATTGAACCATTCCGTTGGCATGAGACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp CAGTTCTGCAGAATTGCAGTTGCAAGCTTCAGTCCTTGGTGTTTCTaGACAGCTCGATCCCTGAAGCTTGTGTCTAGCATACCATTTAAA +
Preference number: 5 (lower is better)
Translates to: QFCRIAVASFSPWCF*TARSLKLVSSIPFK
Trigger: TTTAAATGGTATGCTAGACACAAGCTTCAGGGATCGAGCTGTTCAGAAACACCAAGGACTGAAGCTTGCAACTGCAATTCTGCAGAACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp ACTTCCCTGTCAATGGACTCTTCATCCTCATCCACACTCATACTGTaGTCTCCTGAAGGAGCAGTCAGTCTCTCTTCTATTTTACTGAGA +
Preference number: 5 (lower is better)
Translates to: TSLSMDSSSSSTLIL*SPEGAVSLSSILLR
Trigger: TCTCAGTAAAATAGAAGAGAGACTGACTGCTCCTTCAGGAGATCACAGTATGAGTGTGGATGAGGATGAAGAGTCCATTGACAGGGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp TGGAGTATATACCTCCGGAACCGTGTCAAGGTAAAGCAAGACACTTaGAATAGACTGAAGGAAACTTGGCATCTGGTAAACATGATCCTC +
Preference number: 5 (lower is better)
Translates to: WSIYLRNRVKVKQDT*NRLKETWHLVNMIL
Trigger: GAGGATCATGTTTACCAGATGCCAAGTTTCCTTCAGTCTATTGCAAGTGTCTTGCTTTACCTTGACACGGTTCCGGAGGTATATACTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp AATGCCAGCAATCGGTCCAATGTATTGGAAGGCAATCTGGTTTCATaGCTCCAGAAATTCCGAATAATTAGTTGGAGTCCAACGTTCTCG +
Preference number: 5 (lower is better)
Translates to: NASNRSNVLEGNLVS*LQKFRIISWSPTFS
Trigger: CGAGAACGTTGGACTCCAACTAATTATTCGGAATTTCTGGAGCCATGAAACCAGATTGCCTTCCAATACATTGGACCGATTGCTGGCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp TACCCGCTCATCAAATCCAGAGATCCGCACGTGATATTCAGGCAGTaGTTTGCTTTTTCCATCATATTGTCCAGGAATCTCCAGTTCATT +
Preference number: 5 (lower is better)
Translates to: YPLIKSRDPHVIFRQ*FAFSIILSRNLQFI
Trigger: AATGAACTGGAGATTCCTGGACAATATGATGGAAAAAGCAAACCACTGCCTGAATATCACGTGCGGATCTCTGGATTTGATGAGCGGGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTCGCTTGAAAAGTGACTaGCTGTTTACTGGACTCTTC +
Preference number: 5 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVRLKSD*LFTGLF
Trigger: GAAGAGTCCAGTAAACAGCAAGTCACTTTTCAAGCG...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTACGGTGGAAGATCTTTaGGTATTGAACCCTCTTCTC +
Preference number: 5 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVTVEDL*VLNPLL
Trigger: GAGAAGAGGGTTCAATACCAAAAGATCTTCCACCGT...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp TGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTACAGGAAGTCTGGGTGTaGGCAACTTATTTCCTGGAT +
Preference number: 5 (lower is better)
Translates to: CLQYGFLGLKLVRPLALVQEVWV*ATYFLD
Trigger: ATCCAGGAAATAAGTTGCCAACACCCAGACTTCCTG...TACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGATGGTTTTGAGCATATaGAGGACTTGTTCCCGAGGG +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRMVLSI*RTCSRG
Trigger: CCCTCGGGAACAAGTCCTCAATATGCTCAAAACCAT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGAAGATTGAGTTCACCTaGTTCTCCTCCAGGTCAGAC +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRKIEFT*FSSRSD
Trigger: GTCTGACCTGGAGGAGAACAAGGTGAACTCAATCTT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACATACCTTTCGGAGTTGTaGGTCACAGAAGCCTACCAG +
Preference number: 5 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTYLSEL*VTEAYQ
Trigger: CTGGTAGGCTTCTGTGACCAACAACTCCGAAAGGTA...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGCTTCCATTTCTGCACTaGTCTTCTGTGAGGCACTCT +
Preference number: 5 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRLPFLH*SSVRHS
Trigger: AGAGTGCCTCACAGAAGACAAGTGCAGAAATGGAAG...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGCAATAGCTTCCTCTTaGTCCAGTAAGGCCATCATG +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRAIASS*SSKAIM
Trigger: CATGATGGCCTTACTGGACAAAGAGGAAGCTATTGC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTGTTATAACAGCTGGGTaGGCCCCTGCTAACTTTCTC +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSVITAG*APANFL
Trigger: GAGAAAGTTAGCAGGGGCCAACCCAGCTGTTATAAC...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp GTCAATGGACTCTTCATCCTCATCCACACTCATACTGTGATCTCCTaGAGGAGCAGTCAGTCTCTCTTCTATTTTACTGAGAAAGAAGCA +
Preference number: 5 (lower is better)
Translates to: VNGLFILIHTHTVIS*RSSQSLFYFTEKEA
Trigger: TGCTTCTTTCTCAGTAAAATAGAAGAGAGACTGACTGCTCCTTCAGGAGATCACAGTATGAGTGTGGATGAGGATGAAGAGTCCATTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp ATAGAACTGTTCCATAAAGTACTTCAGCCTGCTCTTATGCAACTCTaGATCTTCTGCCACAGTAAACGAAATCTGTCTCAGGAAGGACTC +
Preference number: 5 (lower is better)
Translates to: IELFHKVLQPALMQL*IFCHSKRNLSQEGL
Trigger: GAGTCCTTCCTGAGACAGATTTCGTTTACTGTGGCAGAAGATGCAGAGTTGCATAAGAGCAGGCTGAAGTACTTTATGGAACAGTTCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp TTTCCATCATATTGTCCAGGAATCTCCAGTTCATTTTTCAGGAACTaGGCTTTGAACTCACTCATCCAGGGGGAATACTCTTTCAGGTTC +
Preference number: 5 (lower is better)
Translates to: FPSYCPGISSSFFRN*ALNSLIQGEYSFRF
Trigger: GAACCTGAAAGAGTATTCCCCCTGGATGAGTGAGTTCAAAGCGCAGTTCCTGAAAAATGAACTGGAGATTCCTGGACAATATGATGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp AGCTGTTTACAGGCTGATAAGATAGAAAGTAACTTAGACCTTTCTTaGCGAGCCCCAGAGCTACACAAGTTAATGGAACAGAGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: SCLQADKIESNLDLS*RAPELHKLMEQSSS
Trigger: TGAAGAGCTCTGTTCCATTAACTTGTGTAGCTCTGGGGCTCGCCAAGAAAGGTCTAAGTTACTTTCTATCTTATCAGCCTGTAAACAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGACTCAACATCCTTTaGAAGGACCACTGGTTTAGA +
Preference number: 5 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVRLNIL*KDHWFR
Trigger: TCTAAACCAGTGGTCCTTCAAAAGGATGTTGAGTCT...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGAATCCCCAGTGGCTCTaGGTTTCATCTGATAAGGTT +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRNPQWL*VSSDKV
Trigger: AACCTTATCAGATGAAACCAAGAGCCACTGGGGATT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGAAGGCTTTTGTTTATTaGTCCTCCCAGAGAGCCAAG +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRKAFVY*SSQRAK
Trigger: CTTGGCTCTCTGGGAGGACAAATAAACAAAAGCCTT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCTGCTGAGGTGTTGTTaGCTTAATGGACCATTTGAG +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRLLRCC*LNGPFE
Trigger: CTCAAATGGTCCATTAAGCAAACAACACCTCAGCAG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTTACTGGACTCTTCTCTaGCTGCTGAGGTGTTGTTTG +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSYWTLL*LLRCCL
Trigger: CAAACAACACCTCAGCAGCAAGAGAAGAGTCCAGTA...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGAAGAAGACTCAGCTCTaGACTATACTGAAGCTCCAG +
Preference number: 5 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRKKTQL*TILKLQ
Trigger: CTGGAGCTTCAGTATAGTCAAGAGCTGAGTCTTCTT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCGGAAAGTGTCAAGATaGAGTTCACCTTGTTCTCCT +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRRKVSR*SSPCSP
Trigger: AGGAGAACAAGGTGAACTCAATCTTGACACTTTCCG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp TTGAAACCTAAGCTCATGGGCTCACAGATCATTTTCACTAAGACCTaGATAAGATTTGTATTACACAAGTCCTTCTCCAGGAGCTTGCAG +
Preference number: 5 (lower is better)
Translates to: LKPKLMGSQIIFTKT*IRFVLHKSFSRSLQ
Trigger: CTGCAAGCTCCTGGAGAAGGACTTGTGTAATACAAATCTTATGCAGGTCTTAGTGAAAATGATCTGTGAGCCCATGAGCTTAGGTTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGCTGTTACAAGGCTTTaGTTTATTTGTCCTCCCAGA +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRAVTRL*FICPPR
Trigger: TCTGGGAGGACAAATAAACAAAAGCCTTGTAACAGC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACACCATTTGAGGAATTCTaGAACGCACCGTCCACAAAA +
Preference number: 5 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTPFEEF*NAPSTK
Trigger: TTTTGTGGACGGTGCGTTCAAGAATTCCTCAAATGG...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGTTCTCGGAGTTCTATaGGTTTTAATTTTGCCACCA +
Preference number: 5 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVVLGVL*VLILPP
Trigger: TGGTGGCAAAATTAAAACCAATAGAACTCCGAGAAC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACACTCGTCGATCAGTCCTaGAATCAGTACATCTTTTGC +
Preference number: 5 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTLVDQS*NQYIFC
Trigger: GCAAAAGATGTACTGATTCAAGGACTGATCGACGAG...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGAATCGGTCCAATGTATaGGAAGGCAATCTGGTTTCA +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRNRSNV*EGNLVS
Trigger: TGAAACCAGATTGCCTTCCAATACATTGGACCGATT...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAAGTGCCACTTTTCACTaGGTTATCCACCTCATCATC +
Preference number: 5 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTSATFH*VIHLII
Trigger: GATGATGAGGTGGATAACCAAGTGAAAAGTGGCACT...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGAAGCGGTTGAAATCTaGGAGCAAATTTTGAGTGAT +
Preference number: 5 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVEAVEI*EQILSD
Trigger: ATCACTCAAAATTTGCTCCAAGATTTCAACCGCTTC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTTTCCTAGTTCATCTTTaGTATCAGAAACCCAGTCCT +
Preference number: 5 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVFLVHL*YQKPSP
Trigger: AGGACTGGGTTTCTGATACAAAAGATGAACTAGGAA...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCCATTCCCAAAGCTCTaGACAAATTCTTTCCCAAAC +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRPFPKL*TNSFPN
Trigger: GTTTGGGAAAGAATTTGTCAAGAGCTTTGGGAATGG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp TTTATTATTGCTTTACAGCACACCAACTGCATTTTGGGACTATACTaGGGGAAGCTGTCTATCTGTACCACCATGAGATGTTCCAGTACT +
Preference number: 5 (lower is better)
Translates to: FIIALQHTNCILGLY*GKLSICTTMRCSST
Trigger: AGTACTGGAACATCTCATGGTGGTACAGATAGACAGCTTCCCTCAGTATAGTCCCAAAATGCAGTTGGTGTGCTGTAAAGCAATAATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp TGTGTGACACATGGACTCTGCCTAGCAATCCTTTTGAAAGTGGTTTaGAACAATTCTTCCATAATATGTCGCTGTTCCCGACAAAGTATA +
Preference number: 5 (lower is better)
Translates to: CVTHGLCLAILLKVV*NNSSIICRCSRQSI
Trigger: TATACTTTGTCGGGAACAGCGACATATTATGGAAGAATTGTTCCAAACCACTTTCAAAAGGATTGCTAGGCAGAGTCCATGTGTCACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTATGGACTTAGTGAAGTaGCACAGAAGTGAGGATAGT +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSMDLVK*HRSEDS
Trigger: ACTATCCTCACTTCTGTGCAACTTCACTAAGTCCAT...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp TTCCTGGAGTTGGTTCACTGCCTCCAATATGGGTTTCTGGGATTGAAGTTAGTTGCAAACGTCGCTTTTTaGCTTTGTTTAAAGAGACAT +
Preference number: 5 (lower is better)
Translates to: FLELVHCLQYGFLGLKLVANVAF*LCLKRH
Trigger: ATGTCTCTTTAAACAAAGCAAAAAAGCGACGTTTGC...AACTAACTTCAATCCCAGAAACCCATATTGGAGGCAGTGAACCAACTCCAGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGTGTACAGACTGTAACTaGGCGAGTCTACTTCTATAT +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRCTDCN*ASLLLY
Trigger: ATATAGAAGTAGACTCGCCAAGTTACAGTCTGTACA...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACAGCTTTTTCCATCATATaGTCCAGGAATCTCCAGTTC +
Preference number: 5 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTAFSII*SRNLQF
Trigger: GAACTGGAGATTCCTGGACAATATGATGGAAAAAGC...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp GGAGTAGCTTTCGCTGCTTATTATAAAAGGGTAGATAATGGCCTGTaGGTAGTTATCAGCAATTTCTTCCACAGTATGTTGTACTGCAAT +
Preference number: 5 (lower is better)
Translates to: GVAFAAYYKRVDNGL*VVISNFFHSMLYCN
Trigger: ATTGCAGTACAACATACTGTGGAAGAAATTGCTGATAACTACCCACAGGCCATTATCTACCCTTTTATAATAAGCAGCGAAAGCTACTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGCTGTATCAGGTAGTTTaGATTTTGATGCAAGTTCTC +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRLYQVV*ILMQVL
Trigger: GAGAACTTGCATCAAAATCAAAACTACCTGATACAG...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGAACCAAAAATTTCCTTaGAAGTCTGGGGATCTTCTT +
Preference number: 5 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRNQKFP*KSGDLL
Trigger: AAGAAGATCCCCAGACTTCAAAGGAAATTTTTGGTT...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp AAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTAGGGCCAACAGTTCATCCTaGTATTGCTTCATTTTAACT +
Preference number: 5 (lower is better)
Translates to: KVDFLCLSEIYCCQRRSRANSSS*YCFILT
Trigger: AGTTAAAATGAAGCAATACAAGGATGAACTGTTGGC...CCTAGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTTTCAACAGCTCACTGTaGATCACTTCTGAGAACAAA +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSFNSSL*ITSENK
Trigger: TTTGTTCTCAGAAGTGATCAACAGTGAGCTGTTGAA...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACATGCCTAGCAATCCTTTaGAAAGTGGTTTGGAACAAT +
Preference number: 5 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTCLAIL*KVVWNN
Trigger: ATTGTTCCAAACCACTTTCAAAAGGATTGCTAGGCA...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTTTTGTTCTCTACATGTaGGAGAAGGATGGGAAACAA +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSFVLYM*EKDGKQ
Trigger: TTGTTTCCCATCCTTCTCCAACATGTAGAGAACAAA...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CACCATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGGGAATCTTCATCATTTaGACTCTCTTGATCTCTGTA +
Preference number: 5 (lower is better)
Translates to: HHKVDFLCLSEIYCCQRRGIFII*TLLISV
Trigger: TACAGAGATCAAGAGAGTCAAAATGATGAAGATTCC...CCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp TTCCGAATAATTAGTTGGAGTCCAACGTTCTCGTCGATCAGTCCTTaGATCAGTACATCTTTTGCCAGTTTAAATATTTCCTGGGAATCT +
Preference number: 5 (lower is better)
Translates to: FRIISWSPTFSSISP*ISTSFASLNISWES
Trigger: AGATTCCCAGGAAATATTTAAACTGGCAAAAGATGTACTGATTCAAGGACTGATCGACGAGAACGTTGGACTCCAACTAATTATTCGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 90 bp ATTTCAAGGTTGTGCCTAAACACAGCTCTTTTGGGATGGAAGACATaGTTCATTAGAAAACGAAGCAATCGATTTGCTAACACTTCATCT +
Preference number: 5 (lower is better)
Translates to: ISRLCLNTALLGWKT*FIRKRSNRFANTSS
Trigger: AGATGAAGTGTTAGCAAATCGATTGCTTCGTTTTCTAATGAAGCATGTCTTCCATCCCAAAAGAGCTGTGTTTAGGCACAACCTTGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTGTATTAATAACAAGCTaGGCTAAGAAGAGACGGATA +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSVLITS*AKKRRI
Trigger: TATCCGTCTCTTCTTAGCCAAGCTTGTTATTAATAC...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTTTACTCCATGAAATTTaGGCAGCAGAAAGAACAAAG +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSLLHEI*AAERTK
Trigger: CTTTGTTCTTTCTGCTGCCAAAATTTCATGGAGTAA...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CATAAAGTAGATTTCCTCTGTCTGTCAGAAATATACTGCTGTCAGCGAAGGTCTATACAACTTAGCAGCTaGACAATAATCACTTCTAGC +
Preference number: 5 (lower is better)
Translates to: HKVDFLCLSEIYCCQRRSIQLSS*TIITSS
Trigger: GCTAGAAGTGATTATTGTCAAGCTGCTAAGTTGTAT...AGACCTTCGCTGACAGCAGTATATTTCTGACAGACAGAGGAAATCTACTTTATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS-3UTR CAA 90 bp CTCCAATATGGGTTTCTGGGATTGAAGTTAGTTAGGCCATTAGCATTGGTAACATATTCAGGCAGTGGTTaGCTTTTTCCATCATATTGT +
Preference number: 5 (lower is better)
Translates to: LQYGFLGLKLVRPLALVTYSGSG*LFPSYC
Trigger: ACAATATGATGGAAAAAGCAAACCACTGCCTGAATA...TGTTACCAATGCTAATGGCCTAACTAACTTCAATCCCAGAAACCCATATTGGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp TCACATACCAACTCTGCTATCACGTGTTTTCTCTCAGTAATGTATTaGAGAATAAGTCCTAAAACTTCTGCTGCAGCTGCATATACTTCT +
Preference number: 5 (lower is better)
Translates to: SHTNSAITCFLSVMY*RISPKTSAAAAYTS
Trigger: AGAAGTATATGCAGCTGCAGCAGAAGTTTTAGGACTTATTCTTCAATACATTACTGAGAGAAAACACGTGATAGCAGAGTTGGTATGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 90 bp TTTCTCTTGTTTTTGATTCTTTATGCATCTCTTTCAGGAGTTTCATaGAGAGTGAGAAATTACTCTGCTTCCAGGCGCTTTCTATCATCT +
Preference number: 5 (lower is better)
Translates to: FLLFLILYASLSGVS*RVRNYSASRRFLSS
Trigger: AGATGATAGAAAGCGCCTGGAAGCAGAGTAATTTCTCACTCTCCATGAAACTCCTGAAAGAGATGCATAAAGAATCAAAAACAAGAGAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp ATTCTAATTAAACCTTGGTGCACCACAGCACTAATGCAATTCCAGTaGACTGGTCCTTTCTCTGATAAGGCTAGGAAAAGTTTTATTATT +
Preference number: 5 (lower is better)
Translates to: ILIKPWCTTALMQFQ*TGPFSDKARKSFII
Trigger: AATAATAAAACTTTTCCTAGCCTTATCAGAGAAAGGACCAGTTCACTGGAATTGCATTAGTGCTGTGGTGCACCAAGGTTTAATTAGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp AAGAGACGGATATTTAAAGATACTGATGCATTTCCTAGTTTGTCATaGAGAAATTTCATCCACGGTGGAAGATCTTTTGGTATTGAACCC +
Preference number: 5 (lower is better)
Translates to: KRRIFKDTDAFPSLS*RNFIHGGRSFGIEP
Trigger: GGGTTCAATACCAAAAGATCTTCCACCGTGGATGAAATTTCTTCATGACAAACTAGGAAATGCATCAGTATCTTTAAATATCCGTCTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 90 bp TTTGTCATTATGTTTAAGGTCTCCTCTGAATACTGCTCTATAATCTaGAGTAATCTAGGAAATTTCAGCCTGGCTTCAGAAGAGTTTAAC +
Preference number: 5 (lower is better)
Translates to: FVIMFKVSSEYCSII*SNLGNFSLASEEFN
Trigger: GTTAAACTCTTCTGAAGCCAGGCTGAAATTTCCTAGATTACTTCAGATTATAGAGCAGTATTCAGAGGAGACCTTAAACATAATGACAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp CTGCAGCGGTCTGCTGCGGACAGGAACTCCTGCAGCTaGAGTAGCCAACACCGTACGCCGGTTCCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: LQRSAADRNSCS*SSQHRTPVPSS
Trigger: GGAGGAGGGAACCGGCGTACGGTGTTGGCTACTGCAGCTGCAGGAGTTCCTGTCCGCAGCAGACCGCTGCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CGCACTCCTGCCCCAGACTACGAATCAGCTGGTAACTaGCCCCGGCAGCACTGCAGCGGTCTGCTGCGGACA +
Preference number: 6 (lower is better)
Translates to: RTPAPDYESAGN*PRQHCSGLLRT
Trigger: TGTCCGCAGCAGACCGCTGCAGTGCTGCCGGGGCCAGTTACCAGCTGATTCGTAGTCTGGGGCAGGAGTGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp GAGGCTGGGAGGGCCCGGCGCCCCGGAGCCAAAGCGTaGTTCTACTGCTCTAGCGCTATGGGTTGCTATGCT +
Preference number: 6 (lower is better)
Translates to: EAGRARRPGAKA*FYCSSAMGCYA
Trigger: AGCATAGCAACCCATAGCGCTAGAGCAGTAGAACAACGCTTTGGCTCCGGGGCGCCGGGCCCTCCCAGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp GACTACGAATCAGCTGGTAACTGGCCCCGGCAGCACTaGAGCGGTCTGCTGCGGACAGGAACTCCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: DYESAGNWPRQH*SGLLRTGTPAA
Trigger: AGCTGCAGGAGTTCCTGTCCGCAGCAGACCGCTGCAGTGCTGCCGGGGCCAGTTACCAGCTGATTCGTAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CGCTCAGCAGCAGCCTCATGGCCCCAGCAGGAAAGCTaGGTTTCCTCTTCAGCTGACTGCACGGCCTTGGAG +
Preference number: 6 (lower is better)
Translates to: RSAAASWPQQES*VSSSADCTALE
Trigger: CTCCAAGGCCGTGCAGTCAGCTGAAGAGGAAACCCAGCTTTCCTGCTGGGGCCATGAGGCTGCTGCTGAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp TCCAATCCCGAGGAGCCAGTGGCTGATGCACAGCAGTaGATGGGAGCTGGCAAAGTGGGAACGCAGTGCCAG +
Preference number: 6 (lower is better)
Translates to: SNPEEPVADAQQ*MGAGKVGTQCQ
Trigger: CTGGCACTGCGTTCCCACTTTGCCAGCTCCCATGCACTGCTGTGCATCAGCCACTGGCTCCTCGGGATTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CGGGAGGCAAGCAAGTCTTGCCCCGAACTCTTTTGGTaGGTGGTTCCTTGGGCATCAGCCGGAGTAGGGCCT +
Preference number: 6 (lower is better)
Translates to: REASKSCPELFW*VVPWASAGVGP
Trigger: AGGCCCTACTCCGGCTGATGCCCAAGGAACCACCCACCAAAAGAGTTCGGGGCAAGACTTGCTTGCCTCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp ATCCCGAGGAGCCAGTGGCTGATGCACAGCAGTGCATaGGAGCTGGCAAAGTGGGAACGCAGTGCCAGGAAG +
Preference number: 6 (lower is better)
Translates to: IPRSQWLMHSSA*ELAKWERSARK
Trigger: CTTCCTGGCACTGCGTTCCCACTTTGCCAGCTCCCATGCACTGCTGTGCATCAGCCACTGGCTCCTCGGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp CACCGGAGAACATCGGGAGGCAAGCAAGTCTTGCCCCGAACTCTTTaGGTGGGTGGTTCCTTGGGCATCAGCCGGAGTAGGGCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: HRRTSGGKQVLPRTL*VGGSLGISRSRASS
Trigger: GGAAGAGGCCCTACTCCGGCTGATGCCCAAGGAACCACCCACCAAAAGAGTTCGGGGCAAGACTTGCTTGCCTCCCGATGTTCTCCGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp CGGCTGCTGCAGACTAGCCAGGCATCCCACTCGAACTaGGGCTGGGTCAAGTGTCAGGAAGTCTGGGTGTTG +
Preference number: 6 (lower is better)
Translates to: RLLQTSQASHSN*GWVKCQEVWVL
Trigger: CAACACCCAGACTTCCTGACACTTGACCCAGCCTCAGTTCGAGTGGGATGCCTGGCTAGTCTGCAGCAGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp ACTTGCTGTAATTGTACTTCTCTTCCTCGTGGAGGCTaGGAGGGCCCGGCGCCCCGGAGCCAAAGCGTTGTT +
Preference number: 6 (lower is better)
Translates to: TCCNCTSLPRGG*EGPAPRSQSVV
Trigger: AACAACGCTTTGGCTCCGGGGCGCCGGGCCCTCCCAGCCTCCACGAGGAAGAGAAGTACAATTACAGCAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp GGAGGCAAGCAAGTCTTGCCCCGAACTCTTTTGGTGGGTGGTTCCTaGGGCATCAGCCGGAGTAGGGCCTCTTCCAGAAGACGGATACCT +
Preference number: 6 (lower is better)
Translates to: GGKQVLPRTLLVGGS*GISRSRASSRRRIP
Trigger: AGGTATCCGTCTTCTGGAAGAGGCCCTACTCCGGCTGATGCCCAAGGAACCACCCACCAAAAGAGTTCGGGGCAAGACTTGCTTGCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp ACATCGGGAGGCAAGCAAGTCTTGCCCCGAACTCTTTaGGTGGGTGGTTCCTTGGGCATCAGCCGGAGTAGG +
Preference number: 6 (lower is better)
Translates to: TSGGKQVLPRTL*VGGSLGISRSR
Trigger: CCTACTCCGGCTGATGCCCAAGGAACCACCCACCAAAAGAGTTCGGGGCAAGACTTGCTTGCCTCCCGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp CAGGGCTCCCATCCTTCCCAAGTCCTGCCAAGGATATaGGGGTCTGTGGCCTGGTCCACCAAGCACTTCACT +
Preference number: 6 (lower is better)
Translates to: QGSHPSQVLPRI*GSVAWSTKHFT
Trigger: AGTGAAGTGCTTGGTGGACCAGGCCACAGACCCCAATATCCTTGGCAGGACTTGGGAAGGATGGGAGCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp GCCCTTGTAAGTAGACGAGGGTTGGCTGAGCAAGAATaGCTGCTGGCTGATCACTGCTGCTTGCCCCTCCTT +
Preference number: 6 (lower is better)
Translates to: ALVSRRGLAEQE*LLADHCCLPLL
Trigger: AAGGAGGGGCAAGCAGCAGTGATCAGCCAGCAGGCATTCTTGCTCAGCCAACCCTCGTCTACTTACAAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp TATTGTTGTTGGGTGGCCCGCACTTGTCCAGGCTTCTaGCTTTGGTCTGAGAGGGGCCCTTCTTGGGTTTGG +
Preference number: 6 (lower is better)
Translates to: YCCWVARTCPGF*LWSERGPSWVW
Trigger: CCAAACCCAAGAAGGGCCCCTCTCAGACCAAAGGCAGAAGCCTGGACAAGTGCGGGCCACCCAACAACAATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CCAGGCTTCTGCCTTTGGTCTGAGAGGGGCCCTTCTTaGGTTTGGGTATGGAGAATACTTGGAGAGGCCTGG +
Preference number: 6 (lower is better)
Translates to: PGFCLWSERGPS*VWVWRILGEAW
Trigger: CCAGGCCTCTCCAAGTATTCTCCATACCCAAACCCAAGAAGGGCCCCTCTCAGACCAAAGGCAGAAGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp TTGTTCAGGTGTCTGTCTCCAATCCCGAGGAGCCAGTaGCTGATGCACAGCAGTGCATGGGAGCTGGCAAAG +
Preference number: 6 (lower is better)
Translates to: LFRCLSPIPRSQ*LMHSSAWELAK
Trigger: CTTTGCCAGCTCCCATGCACTGCTGTGCATCAGCCACTGGCTCCTCGGGATTGGAGACAGACACCTGAACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp AGGGCTCCCATCCTTCCCAAGTCCTGCCAAGGATATTaGGGTCTGTGGCCTGGTCCACCAAGCACTTCACTT +
Preference number: 6 (lower is better)
Translates to: RAPILPKSCQGY*GLWPGPPSTSL
Trigger: AAGTGAAGTGCTTGGTGGACCAGGCCACAGACCCCAATATCCTTGGCAGGACTTGGGAAGGATGGGAGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp CAAGTCTTGCCCCGAACTCTTTTGGTGGGTGGTTCCTaGGGCATCAGCCGGAGTAGGGCCTCTTCCAGAAGA +
Preference number: 6 (lower is better)
Translates to: QVLPRTLLVGGS*GISRSRASSRR
Trigger: TCTTCTGGAAGAGGCCCTACTCCGGCTGATGCCCAAGGAACCACCCACCAAAAGAGTTCGGGGCAAGACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp AGCAGACCTGCACAAGAGCGGAAAGCCCTCAGTGCATaGACCATGACCGTGCACATGAGACCCGTTTCTTTC +
Preference number: 6 (lower is better)
Translates to: SRPAQERKALSA*TMTVHMRPVSF
Trigger: GAAAGAAACGGGTCTCATGTGCACGGTCATGGTGCATGCACTGAGGGCTTTCCGCTCTTGTGCAGGTCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp GCAGCACAGGAAACGTGTGCTTATAAAGCTGGTACATaGGCGGCAACCCCTGACCTTCAGGCATCTGAGTCG +
Preference number: 6 (lower is better)
Translates to: AAQETCAYKAGT*AATPDLQASES
Trigger: CGACTCAGATGCCTGAAGGTCAGGGGTTGCCGCCCATGTACCAGCTTTATAAGCACACGTTTCCTGTGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp AAAGCTGGGTTTCCTCTTCAGCTGACTGCACGGCCTTaGAGAGGTGATGGAATGCTCTCTGGTACAGACCCG +
Preference number: 6 (lower is better)
Translates to: KAGFPLQLTARP*RGDGMLSGTDP
Trigger: CGGGTCTGTACCAGAGAGCATTCCATCACCTCTCCAAGGCCGTGCAGTCAGCTGAAGAGGAAACCCAGCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CAAAGTGGGAACGCAGTGCCAGGAAGGCCTCAGGGCTaGTGCTCATCTTTACAAAGGCCCGCTTTAAGAGGT +
Preference number: 6 (lower is better)
Translates to: QSGNAVPGRPQG*CSSLQRPALRG
Trigger: ACCTCTTAAAGCGGGCCTTTGTAAAGATGAGCACCAGCCCTGAGGCCTTCCTGGCACTGCGTTCCCACTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp GTTTCCTCTTCAGCTGACTGCACGGCCTTGGAGAGGTaGTGGAATGCTCTCTGGTACAGACCCGTGATTACC +
Preference number: 6 (lower is better)
Translates to: VSSSADCTALER*WNALWYRPVIT
Trigger: GGTAATCACGGGTCTGTACCAGAGAGCATTCCATCACCTCTCCAAGGCCGTGCAGTCAGCTGAAGAGGAAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CTAATTCCAGGAGTCCATTGGCTAGGCTCTTACAGCTaGGGTCCAAAGACTGCAGGCACTGCCTTTCCTCTG +
Preference number: 6 (lower is better)
Translates to: LIPGVHWLGSYS*GPKTAGTAFPL
Trigger: CAGAGGAAAGGCAGTGCCTGCAGTCTTTGGACCCCAGCTGTAAGAGCCTAGCCAATGGACTCCTGGAATTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp TTCTGCCTTTGGTCTGAGAGGGGCCCTTCTTGGGTTTaGGTATGGAGAATACTTGGAGAGGCCTGGGTCTCA +
Preference number: 6 (lower is better)
Translates to: FCLWSERGPSWV*VWRILGEAWVS
Trigger: TGAGACCCAGGCCTCTCCAAGTATTCTCCATACCCAAACCCAAGAAGGGCCCCTCTCAGACCAAAGGCAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp TGGTCACACAGTCCTCCAAAACCAAAGGCTAATTCCAGGAGTCCATaGGCTAGGCTCTTACAGCTGGGGTCCAAAGACTGCAGGCACTGC +
Preference number: 6 (lower is better)
Translates to: WSHSPPKPKANSRSP*ARLLQLGSKDCRHC
Trigger: GCAGTGCCTGCAGTCTTTGGACCCCAGCTGTAAGAGCCTAGCCAATGGACTCCTGGAATTAGCCTTTGGTTTTGGAGGACTGTGTGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp TGTTGTTCTCGCAAACAGCTAGCTGTAGCAGGGGGCTaGGCCAGTGCTTTGCATAAGGGCGAAAGACCTCTT +
Preference number: 6 (lower is better)
Translates to: CCSRKQLAVAGG*ASALHKGERPL
Trigger: AAGAGGTCTTTCGCCCTTATGCAAAGCACTGGCTCAGCCCCCTGCTACAGCTAGCTGTTTGCGAGAACAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp TTATTGGGTCTTTCTGGGCCACAGCCTGCAAGGGGGTaGTCAGACCACTGTGCTGGATCTGGATATCAGGAA +
Preference number: 6 (lower is better)
Translates to: LLGLSGPQPARG*SDHCAGSGYQE
Trigger: TTCCTGATATCCAGATCCAGCACAGTGGTCTGATCACCCCCTTGCAGGCTGTGGCCCAGAAAGACCCAATAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp TGTTTTGCAATTATTGGGTCTTTCTGGGCCACAGCCTaGAAGGGGGTGATCAGACCACTGTGCTGGATCTGG +
Preference number: 6 (lower is better)
Translates to: CFAIIGSFWATA*KGVIRPLCWIW
Trigger: CCAGATCCAGCACAGTGGTCTGATCACCCCCTTGCAGGCTGTGGCCCAGAAAGACCCAATAATTGCAAAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp ATCCTTCCCAAGTCCTGCCAAGGATATTGGGGTCTGTaGCCTGGTCCACCAAGCACTTCACTTGAGTCTCTT +
Preference number: 6 (lower is better)
Translates to: ILPKSCQGYWGL*PGPPSTSLESL
Trigger: AAGAGACTCAAGTGAAGTGCTTGGTGGACCAGGCCACAGACCCCAATATCCTTGGCAGGACTTGGGAAGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp GTGTTCTCTGCATTAGATCCGGAAAGTGTCAAGATTGAGTTCACCTaGTTCTCCTCCAGGTCAGACAGGCAGGCTGGCTCTCTGCTGAGA +
Preference number: 6 (lower is better)
Translates to: VFSALDPESVKIEFT*FSSRSDRQAGSLLR
Trigger: TCTCAGCAGAGAGCCAGCCTGCCTGTCTGACCTGGAGGAGAACAAGGTGAACTCAATCTTGACACTTTCCGGATCTAATGCAGAGAACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp AAGTCAATTCCAATCACACTGCCTGTCTCCATGGCCACCATGAAATaGTTCAGGTGTCTGTCTCCAATCCCGAGGAGCCAGTGGCTGATG +
Preference number: 6 (lower is better)
Translates to: KSIPITLPVSMATMK*FRCLSPIPRSQWLM
Trigger: CATCAGCCACTGGCTCCTCGGGATTGGAGACAGACACCTGAACAATTTCATGGTGGCCATGGAGACAGGCAGTGTGATTGGAATTGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp GAGAGAGCGATCTACAAATGCCTGGCGAGTGACATTTaGAGGGAGGTCAGCCTTCCGGAACATTGTGTACAC +
Preference number: 6 (lower is better)
Translates to: ERAIYKCLASDI*REVSLPEHCVH
Trigger: GTGTACACAATGTTCCGGAAGGCTGACCTCCCTTCAAATGTCACTCGCCAGGCATTTGTAGATCGCTCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp GACTGCAGGCAGCATCCTGAGAGAGAATGGCATTCATaGCCTCAAAGATCTGCTCAATGCGCTGGTCTTGAC +
Preference number: 6 (lower is better)
Translates to: DCRQHPEREWHS*PQRSAQCAGLD
Trigger: GTCAAGACCAGCGCATTGAGCAGATCTTTGAGGTCATGAATGCCATTCTCTCTCAGGATGCTGCCTGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp AGGAGGGTTCCTTCACAAAAATTTCCATGGTGTCAGTaGGCAGACCTGCACAAGAGCGGAAAGCCCTCAGTG +
Preference number: 6 (lower is better)
Translates to: RRVPSQKFPWCQ*ADLHKSGKPSV
Trigger: CACTGAGGGCTTTCCGCTCTTGTGCAGGTCTGCTCACTGACACCATGGAAATTTTTGTGAAGGAACCCTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp GGGATCACCCAGACATCAGCAGTGCTTCCATCCTCCTaGTCTCCAACAGTCTGTTTTTCCAGTGTAAGATCC +
Preference number: 6 (lower is better)
Translates to: GITQTSAVLPSS*SPTVCFSSVRS
Trigger: GGATCTTACACTGGAAAAACAGACTGTTGGAGAGCAGGAGGATGGAAGCACTGCTGATGTCTGGGTGATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp CTGAAGAGAAGACGGTGTGATCCGCCAGTAGGTCAATaGTGCTCCCAGTCAGCCAATCAAATGAGCTCCTTT +
Preference number: 6 (lower is better)
Translates to: LKRRRCDPPVGQ*CSQSANQMSSF
Trigger: AAAGGAGCTCATTTGATTGGCTGACTGGGAGCAGCATTGACCTACTGGCGGATCACACCGTCTTCTCTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp ATTACACAAGTCCTTCTCCAGGAGCTTGCAGTCCTCTaGAGAGGCGATGAGCAGGGTTGTGGTGAATTCCAT +
Preference number: 6 (lower is better)
Translates to: ITQVLLQELAVL*RGDEQGCGEFH
Trigger: ATGGAATTCACCACAACCCTGCTCATCGCCTCTCCAGAGGACTGCAAGCTCCTGGAGAAGGACTTGTGTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp GTCCTCCAAAACCAAAGGCTAATTCCAGGAGTCCATTaGCTAGGCTCTTACAGCTGGGGTCCAAAGACTGCA +
Preference number: 6 (lower is better)
Translates to: VLQNQRLIPGVH*LGSYSWGPKTA
Trigger: TGCAGTCTTTGGACCCCAGCTGTAAGAGCCTAGCCAATGGACTCCTGGAATTAGCCTTTGGTTTTGGAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp GAGGGGCCCTTCTTGGGTTTGGGTATGGAGAATACTTaGAGAGGCCTGGGTCTCAATAAACATCGGAGTAAG +
Preference number: 6 (lower is better)
Translates to: EGPFLGLGMENT*RGLGLNKHRSK
Trigger: CTTACTCCGATGTTTATTGAGACCCAGGCCTCTCCAAGTATTCTCCATACCCAAACCCAAGAAGGGCCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CTTTGGTCTGAGAGGGGCCCTTCTTGGGTTTGGGTATaGAGAATACTTGGAGAGGCCTGGGTCTCAATAAAC +
Preference number: 6 (lower is better)
Translates to: LWSERGPSWVWV*RILGEAWVSIN
Trigger: GTTTATTGAGACCCAGGCCTCTCCAAGTATTCTCCATACCCAAACCCAAGAAGGGCCCCTCTCAGACCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CTGCTGAAGAGTTGTTTTGCAATTATTGGGTCTTTCTaGGCCACAGCCTGCAAGGGGGTGATCAGACCACTG +
Preference number: 6 (lower is better)
Translates to: LLKSCFAIIGSF*ATACKGVIRPL
Trigger: CAGTGGTCTGATCACCCCCTTGCAGGCTGTGGCCCAGAAAGACCCAATAATTGCAAAACAACTCTTCAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp AGTCCTCCAAAACCAAAGGCTAATTCCAGGAGTCCATaGGCTAGGCTCTTACAGCTGGGGTCCAAAGACTGC +
Preference number: 6 (lower is better)
Translates to: SPPKPKANSRSP*ARLLQLGSKDC
Trigger: GCAGTCTTTGGACCCCAGCTGTAAGAGCCTAGCCAATGGACTCCTGGAATTAGCCTTTGGTTTTGGAGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp TGCAACATCTTTGCCAGCAAAGACAGCACAGTTGTTTaGCTCTCTGGGGCAGAATCTGGGGCCCACCATGAA +
Preference number: 6 (lower is better)
Translates to: CNIFASKDSTVV*LSGAESGAHHE
Trigger: TTCATGGTGGGCCCCAGATTCTGCCCCAGAGAGCAAAACAACTGTGCTGTCTTTGCTGGCAAAGATGTTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp CAGAATATCTGCCTGGCTCGGAGTGCCACTTTTCACTaGGTTATCCACCTCATCATCAGGAAGGCCCAGCTT +
Preference number: 6 (lower is better)
Translates to: QNICLARSATFH*VIHLIIRKAQL
Trigger: AAGCTGGGCCTTCCTGATGATGAGGTGGATAACCAAGTGAAAAGTGGCACTCCGAGCCAGGCAGATATTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp GCATTAGATCCGGAAAGTGTCAAGATTGAGTTCACCTaGTTCTCCTCCAGGTCAGACAGGCAGGCTGGCTCT +
Preference number: 6 (lower is better)
Translates to: ALDPESVKIEFT*FSSRSDRQAGS
Trigger: AGAGCCAGCCTGCCTGTCTGACCTGGAGGAGAACAAGGTGAACTCAATCTTGACACTTTCCGGATCTAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp ATTCATGACCTCAAAGATCTGCTCAATGCGCTGGTCTaGACGGAGGTCCTCACCACCTTTTACCAGGAACGG +
Preference number: 6 (lower is better)
Translates to: IHDLKDLLNALV*TEVLTTFYQER
Trigger: CCGTTCCTGGTAAAAGGTGGTGAGGACCTCCGTCAAGACCAGCGCATTGAGCAGATCTTTGAGGTCATGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp GAGAATGGCATTCATGACCTCAAAGATCTGCTCAATGCGCTGGTCTaGACGGAGGTCCTCACCACCTTTTACCAGGAACGGGTATTCCTT +
Preference number: 6 (lower is better)
Translates to: ENGIHDLKDLLNALV*TEVLTTFYQERVFL
Trigger: AAGGAATACCCGTTCCTGGTAAAAGGTGGTGAGGACCTCCGTCAAGACCAGCGCATTGAGCAGATCTTTGAGGTCATGAATGCCATTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp CAATTCCAATCACACTGCCTGTCTCCATGGCCACCATaGAATTGTTCAGGTGTCTGTCTCCAATCCCGAGGA +
Preference number: 6 (lower is better)
Translates to: QFQSHCLSPWPP*NCSGVCLQSRG
Trigger: TCCTCGGGATTGGAGACAGACACCTGAACAATTTCATGGTGGCCATGGAGACAGGCAGTGTGATTGGAATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp AAGAGAAGACGGTGTGATCCGCCAGTAGGTCAATGCTaGTCCCAGTCAGCCAATCAAATGAGCTCCTTTCAA +
Preference number: 6 (lower is better)
Translates to: KRRRCDPPVGQC*SQSANQMSSFQ
Trigger: TTGAAAGGAGCTCATTTGATTGGCTGACTGGGAGCAGCATTGACCTACTGGCGGATCACACCGTCTTCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp ACTGAAGCTTGTGTTGGAGTGAAATCATATTGTTGTTaGGTGGCCCGCACTTGTCCAGGCTTCTGCCTTTGG +
Preference number: 6 (lower is better)
Translates to: TEACVGVKSYCC*VARTCPGFCLW
Trigger: CCAAAGGCAGAAGCCTGGACAAGTGCGGGCCACCCAACAACAATATGATTTCACTCCAACACAAGCTTCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp AGAATATCTGCCTGGCTCGGAGTGCCACTTTTCACTTaGTTATCCACCTCATCATCAGGAAGGCCCAGCTTT +
Preference number: 6 (lower is better)
Translates to: RISAWLGVPLFT*LSTSSSGRPSF
Trigger: AAAGCTGGGCCTTCCTGATGATGAGGTGGATAACCAAGTGAAAAGTGGCACTCCGAGCCAGGCAGATATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp ACTGAGGCTGGGTCAAGTGTCAGGAAGTCTGGGTGTTaGCAACTTATTTCCTGGATGCAAGAGACAAAGGGT +
Preference number: 6 (lower is better)
Translates to: TEAGSSVRKSGC*QLISWMQETKG
Trigger: ACCCTTTGTCTCTTGCATCCAGGAAATAAGTTGCCAACACCCAGACTTCCTGACACTTGACCCAGCCTCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp GCGATGCCAGCTCCCAAAACTCCTTCTCAGCTTCTGTaGGTTCACCATCCACCCACTCCAGTTTATTTAAAG +
Preference number: 6 (lower is better)
Translates to: AMPAPKTPSQLL*VHHPPTPVYLK
Trigger: CTTTAAATAAACTGGAGTGGGTGGATGGTGAACCCACAGAAGCTGAGAAGGAGTTTTGGGAGCTGGCATCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp GCAGCGATTTGTGATGATGTCATCCCAGATGTGCATTaGGTCTGTCACAACATCTGGGTATCTGCTGGTCCA +
Preference number: 6 (lower is better)
Translates to: AAICDDVIPDVH*VCHNIWVSAGP
Trigger: TGGACCAGCAGATACCCAGATGTTGTGACAGACCCAATGCACATCTGGGATGACATCATCACAAATCGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp CCCTTCTGGGCAGCCCGAGAAAGTGCAGACAATCCCCAGTGGCTCTaGGTTTCATCTGATAAGGTTGAAGTATTCAGATATCCATCAAGG +
Preference number: 6 (lower is better)
Translates to: PFWAARESADNPQWL*VSSDKVEVFRYPSR
Trigger: CCTTGATGGATATCTGAATACTTCAACCTTATCAGATGAAACCAAGAGCCACTGGGGATTGTCTGCACTTTCTCGGGCTGCCCAGAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp CGGTTCATAGAGCTGCCTTGTCACTTGATCCACATCACACGCAAGTaGAAGCAGCACAGGAAACGTGTGCTTATAAAGCTGGTACATGGG +
Preference number: 6 (lower is better)
Translates to: RFIELPCHLIHITRK*KQHRKRVLIKLVHG
Trigger: CCCATGTACCAGCTTTATAAGCACACGTTTCCTGTGCTGCTTCAACTTGCGTGTGATGTGGATCAAGTGACAAGGCAGCTCTATGAACCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp AAGACCTGCATAAGATTTGTATTACACAAGTCCTTCTCCAGGAGCTaGCAGTCCTCTGGAGAGGCGATGAGCAGGGTTGTGGTGAATTCC +
Preference number: 6 (lower is better)
Translates to: KTCIRFVLHKSFSRS*QSSGEAMSRVVVNS
Trigger: GGAATTCACCACAACCCTGCTCATCGCCTCTCCAGAGGACTGCAAGCTCCTGGAGAAGGACTTGTGTAATACAAATCTTATGCAGGTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp AATCTGGGGCCCACCATGAATCACACTTCCTCCAGTTCTGCAGAATaGCAGTTGCAAGCTTCAGTCCTTGGTGTTTCTGAACAGCTCGAT +
Preference number: 6 (lower is better)
Translates to: NLGPTMNHTSSSSAE*QLQASVLGVSEQLD
Trigger: ATCGAGCTGTTCAGAAACACCAAGGACTGAAGCTTGCAACTGCAATTCTGCAGAACTGGAGGAAGTGTGATTCATGGTGGGCCCCAGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp GCATCTGCGTGGGTGAGGAACATCTGCTTACAGCGCTaGATGAGCTCCACGTACATGAAGTCAACATCTTTT +
Preference number: 6 (lower is better)
Translates to: ASAWVRNICLQR*MSSTYMKSTSF
Trigger: AAAAGATGTTGACTTCATGTACGTGGAGCTCATTCAGCGCTGTAAGCAGATGTTCCTCACCCACGCAGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp ACTTGGCATCTGGTAAACATGATCCTCAGAAGCATCTaGGTGGGTGAGGAACATCTGCTTACAGCGCTGAAT +
Preference number: 6 (lower is better)
Translates to: TWHLVNMILRSI*VGEEHLLTALN
Trigger: ATTCAGCGCTGTAAGCAGATGTTCCTCACCCACGCAGATGCTTCTGAGGATCATGTTTACCAGATGCCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CCGGAGCCAAAGCGTTGTTCTACTGCTCTAGCGCTATaGGTTGCTATGCTTTCTAAAAAGAAAGCCACTGAC +
Preference number: 6 (lower is better)
Translates to: PEPKRCSTALAL*VAMLSKKKATD
Trigger: GTCAGTGGCTTTCTTTTTAGAAAGCATAGCAACCCATAGCGCTAGAGCAGTAGAACAACGCTTTGGCTCCGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp GCAATAGCTTCCTCTTTGTCCAGTAAGGCCATCATGTaGCTGATCCAGCCAATGAACTGCCAGCAAGGAATA +
Preference number: 6 (lower is better)
Translates to: AIASSLSSKAIM*LIQPMNCQQGI
Trigger: TATTCCTTGCTGGCAGTTCATTGGCTGGATCAGCCACATGATGGCCTTACTGGACAAAGAGGAAGCTATTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp GAGCTGCCTTGTCACTTGATCCACATCACACGCAAGTaGAAGCAGCACAGGAAACGTGTGCTTATAAAGCTG +
Preference number: 6 (lower is better)
Translates to: ELPCHLIHITRK*KQHRKRVLIKL
Trigger: CAGCTTTATAAGCACACGTTTCCTGTGCTGCTTCAACTTGCGTGTGATGTGGATCAAGTGACAAGGCAGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp CCAGTTCTGCAGAATTGCAGTTGCAAGCTTCAGTCCTaGGTGTTTCTGAACAGCTCGATCCCTGAAGCTTGT +
Preference number: 6 (lower is better)
Translates to: PVLQNCSCKLQS*VFLNSSIPEAC
Trigger: ACAAGCTTCAGGGATCGAGCTGTTCAGAAACACCAAGGACTGAAGCTTGCAACTGCAATTCTGCAGAACTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp TGTGTTCTCTGCATTAGATCCGGAAAGTGTCAAGATTaGGTTCACCTTGTTCTCCTCCAGGTCAGACAGGCA +
Preference number: 6 (lower is better)
Translates to: CVLCIRSGKCQD*VHLVLLQVRQA
Trigger: TGCCTGTCTGACCTGGAGGAGAACAAGGTGAACTCAATCTTGACACTTTCCGGATCTAATGCAGAGAACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp GTACTTCAGCCTGCTCTTATGCAACTCTGCATCTTCTaGCACAGTAAACGAAATCTGTCTCAGGAAGGACTC +
Preference number: 6 (lower is better)
Translates to: VLQPALMQLCIF*HSKRNLSQEGL
Trigger: GAGTCCTTCCTGAGACAGATTTCGTTTACTGTGGCAGAAGATGCAGAGTTGCATAAGAGCAGGCTGAAGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp GAACCCTCTTCTCCCTTAGGTGCAATCACATTTCTCTaGATGTGCTTAATCAGGGCTATCATGGGAGCCATA +
Preference number: 6 (lower is better)
Translates to: EPSSPLGAITFL*MCLIRAIMGAI
Trigger: TATGGCTCCCATGATAGCCCTGATTAAGCACATGCAGAGAAATGTGATTGCACCTAAGGGAGAAGAGGGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp TTTCCATTTAGAGAGGTTGTTGTAACAGTCAAGCGATaGCAGCTCCCAAAACTCCTTCTCAGCTTCTGTGGG +
Preference number: 6 (lower is better)
Translates to: FPFREVVVTVKR*QLPKLLLSFCG
Trigger: CCCACAGAAGCTGAGAAGGAGTTTTGGGAGCTGGCATCGCTTGACTGTTACAACAACCTCTCTAAATGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp AAGAAGCAGCGATTTGTGATGATGTCATCCCAGATGTaGATTGGGTCTGTCACAACATCTGGGTATCTGCTG +
Preference number: 6 (lower is better)
Translates to: KKQRFVMMSSQM*IGSVTTSGYLL
Trigger: CAGCAGATACCCAGATGTTGTGACAGACCCAATGCACATCTGGGATGACATCATCACAAATCGCTGCTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp GACAGCATTGCCGAATTCAGGAGCAAACTCACAAGATaGTCACACAGTCCTCCAAAACCAAAGGCTAATTCC +
Preference number: 6 (lower is better)
Translates to: DSIAEFRSKLTR*SHSPPKPKANS
Trigger: GGAATTAGCCTTTGGTTTTGGAGGACTGTGTGACCATCTTGTGAGTTTGCTCCTGAATTCGGCAATGCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp TTCCTTTTCATCATGGCCTCGAATAACAATGCGCTTTaGCTTCCTCAAGGAGAGCATCACTTTTACCCGCTC +
Preference number: 6 (lower is better)
Translates to: FLFIMASNNNAL*LPQGEHHFYPL
Trigger: GAGCGGGTAAAAGTGATGCTCTCCTTGAGGAAGCCAAAGCGCATTGTTATTCGAGGCCATGATGAAAAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CCACCTTTTACCAGGAACGGGTATTCCTTTTCATCATaGCCTCGAATAACAATGCGCTTTGGCTTCCTCAAG +
Preference number: 6 (lower is better)
Translates to: PPFTRNGYSFSS*PRITMRFGFLK
Trigger: CTTGAGGAAGCCAAAGCGCATTGTTATTCGAGGCCATGATGAAAAGGAATACCCGTTCCTGGTAAAAGGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CCCGTTTCTTTCATTGGCAACATGAGACTGACAAATTaGCGGGTTAGACGAAAAGGCATCAACTCAGGGACT +
Preference number: 6 (lower is better)
Translates to: PVSFIGNMRLTN*RVRRKGINSGT
Trigger: AGTCCCTGAGTTGATGCCTTTTCGTCTAACCCGCCAATTTGTCAGTCTCATGTTGCCAATGAAAGAAACGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp GGTTATCCACCTCATCATCAGGAAGGCCCAGCTTTTTaGTTCCAAAGTCCGGTCCTACTGACTTACAAGACA +
Preference number: 6 (lower is better)
Translates to: GYPPHHQEGPAF*FQSPVLLTYKT
Trigger: TGTCTTGTAAGTCAGTAGGACCGGACTTTGGAACAAAAAAGCTGGGCCTTCCTGATGATGAGGTGGATAACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp TCTTCCACAGTATGTTGTACTGCAATAGCTTCCTCTTaGTCCAGTAAGGCCATCATGTGGCTGATCCAGCCA +
Preference number: 6 (lower is better)
Translates to: SSTVCCTAIASS*SSKAIMWLIQP
Trigger: TGGCTGGATCAGCCACATGATGGCCTTACTGGACAAAGAGGAAGCTATTGCAGTACAACATACTGTGGAAGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp CCAGGAATCTCCAGTTCATTTTTCAGGAACTGCGCTTaGAACTCACTCATCCAGGGGGAATACTCTTTCAGG +
Preference number: 6 (lower is better)
Translates to: PGISSSFFRNCA*NSLIQGEYSFR
Trigger: CCTGAAAGAGTATTCCCCCTGGATGAGTGAGTTCAAAGCGCAGTTCCTGAAAAATGAACTGGAGATTCCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp TCAGCAATTTCTTCCACAGTATGTTGTACTGCAATAGCTTCCTCTTaGTCCAGTAAGGCCATCATGTGGCTGATCCAGCCAATGAACTGC +
Preference number: 6 (lower is better)
Translates to: SAISSTVCCTAIASS*SSKAIMWLIQPMNC
Trigger: GCAGTTCATTGGCTGGATCAGCCACATGATGGCCTTACTGGACAAAGAGGAAGCTATTGCAGTACAACATACTGTGGAAGAAATTGCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp TCGACCTTCATTGTAAGCAGCTTAGAACCACCATTCCCAAAGCTCTaGACAAATTCTTTCCCAAACGCCTGTATGAACCTCCTCCGAAAG +
Preference number: 6 (lower is better)
Translates to: STFIVSSLEPPFPKL*TNSFPNACMNLLRK
Trigger: CTTTCGGAGGAGGTTCATACAGGCGTTTGGGAAAGAATTTGTCAAGAGCTTTGGGAATGGTGGTTCTAAGCTGCTTACAATGAAGGTCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp TCATATTGTCCAGGAATCTCCAGTTCATTTTTCAGGAACTGCGCTTaGAACTCACTCATCCAGGGGGAATACTCTTTCAGGTTCCCAGGT +
Preference number: 6 (lower is better)
Translates to: SYCPGISSSFFRNCA*NSLIQGEYSFRFPG
Trigger: ACCTGGGAACCTGAAAGAGTATTCCCCCTGGATGAGTGAGTTCAAAGCGCAGTTCCTGAAAAATGAACTGGAGATTCCTGGACAATATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp GACTATACTGAGGGAAGCTGTCTATCTGTACCACCATaGGATGTTCCAGTACTGGAGTATATACCTCCGGAA +
Preference number: 6 (lower is better)
Translates to: DYTEGSCLSVPP*DVPVLEYIPPE
Trigger: TTCCGGAGGTATATACTCCAGTACTGGAACATCTCATGGTGGTACAGATAGACAGCTTCCCTCAGTATAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp GCTTTACAGCACACCAACTGCATTTTGGGACTATACTaGGGGAAGCTGTCTATCTGTACCACCATGAGATGT +
Preference number: 6 (lower is better)
Translates to: ALQHTNCILGLY*GKLSICTTMRC
Trigger: ACATCTCATGGTGGTACAGATAGACAGCTTCCCTCAGTATAGTCCCAAAATGCAGTTGGTGTGCTGTAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp AGAATTGCAGTTGCAAGCTTCAGTCCTTGGTGTTTCTaGACAGCTCGATCCCTGAAGCTTGTGTCTAGCATA +
Preference number: 6 (lower is better)
Translates to: RIAVASFSPWCF*TARSLKLVSSI
Trigger: TATGCTAGACACAAGCTTCAGGGATCGAGCTGTTCAGAAACACCAAGGACTGAAGCTTGCAACTGCAATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp CAAATGAGCTCCTTTCAACTGAAGCTTGTGTTGGAGTaGAATCATATTGTTGTTGGGTGGCCCGCACTTGTC +
Preference number: 6 (lower is better)
Translates to: QMSSFQLKLVLE*NHIVVGWPALV
Trigger: GACAAGTGCGGGCCACCCAACAACAATATGATTTCACTCCAACACAAGCTTCAGTTGAAAGGAGCTCATTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp TTTACAAAGGCCCGCTTTAAGAGGTCAGGCGGCACTTaGCTTTCCCTTCTTCTGAAAGCTACAACTGTTTCT +
Preference number: 6 (lower is better)
Translates to: FTKARFKRSGGT*LSLLLKATTVS
Trigger: AGAAACAGTTGTAGCTTTCAGAAGAAGGGAAAGTCAAGTGCCGCCTGACCTCTTAAAGCGGGCCTTTGTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp TACCTCCGGAACCGTGTCAAGGTAAAGCAAGACACTTaGAATAGACTGAAGGAAACTTGGCATCTGGTAAAC +
Preference number: 6 (lower is better)
Translates to: YLRNRVKVKQDT*NRLKETWHLVN
Trigger: GTTTACCAGATGCCAAGTTTCCTTCAGTCTATTGCAAGTGTCTTGCTTTACCTTGACACGGTTCCGGAGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp ATTGGTTGCCTTCTCCTTGAAGCAGGAGCTTTAGTTTaGTACGGATCACATATGGCAGATACGTCTCCTGAT +
Preference number: 6 (lower is better)
Translates to: IGCLLLEAGALV*YGSHMADTSPD
Trigger: ATCAGGAGACGTATCTGCCATATGTGATCCGTAGCAAACTAAAGCTCCTGCTTCAAGGAGAAGGCAACCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CAGCCCGAGAAAGTGCAGACAATCCCCAGTGGCTCTTaGTTTCATCTGATAAGGTTGAAGTATTCAGATATC +
Preference number: 6 (lower is better)
Translates to: QPEKVQTIPSGS*FHLIRLKYSDI
Trigger: GATATCTGAATACTTCAACCTTATCAGATGAAACCAAGAGCCACTGGGGATTGTCTGCACTTTCTCGGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp GAACATCTTCCTTTGGCTCGTACACTTCCCTGTCAATaGACTCTTCATCCTCATCCACACTCATACTGTGAT +
Preference number: 6 (lower is better)
Translates to: EHLPLARTLPCQ*TLHPHPHSYCD
Trigger: ATCACAGTATGAGTGTGGATGAGGATGAAGAGTCCATTGACAGGGAAGTGTACGAGCCAAAGGAAGATGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp GCAGCCCGAGAAAGTGCAGACAATCCCCAGTGGCTCTaGGTTTCATCTGATAAGGTTGAAGTATTCAGATAT +
Preference number: 6 (lower is better)
Translates to: AARESADNPQWL*VSSDKVEVFRY
Trigger: ATATCTGAATACTTCAACCTTATCAGATGAAACCAAGAGCCACTGGGGATTGTCTGCACTTTCTCGGGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp ATGAATCACACTTCCTCCAGTTCTGCAGAATTGCAGTaGCAAGCTTCAGTCCTTGGTGTTTCTGAACAGCTC +
Preference number: 6 (lower is better)
Translates to: MNHTSSSSAELQ*QASVLGVSEQL
Trigger: GAGCTGTTCAGAAACACCAAGGACTGAAGCTTGCAACTGCAATTCTGCAGAACTGGAGGAAGTGTGATTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp TTTTCACTTGGTTATCCACCTCATCATCAGGAAGGCCCAGCTTTTTaGTTCCAAAGTCCGGTCCTACTGACTTACAAGACATTCTCTGTG +
Preference number: 6 (lower is better)
Translates to: FSLGYPPHHQEGPAF*FQSPVLLTYKTFSV
Trigger: CACAGAGAATGTCTTGTAAGTCAGTAGGACCGGACTTTGGAACAAAAAAGCTGGGCCTTCCTGATGATGAGGTGGATAACCAAGTGAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp AAACCTTGGTGCACCACAGCACTAATGCAATTCCAGTaGACTGGTCCTTTCTCTGATAAGGCTAGGAAAAGT +
Preference number: 6 (lower is better)
Translates to: KPWCTTALMQFQ*TGPFSDKARKS
Trigger: ACTTTTCCTAGCCTTATCAGAGAAAGGACCAGTTCACTGGAATTGCATTAGTGCTGTGGTGCACCAAGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp GCCAACGGAATGGTTCAATGCTGTAGACTGAGATGGTaGTATAACATGAGAGAAACCAGCTTTGTGAAGCTG +
Preference number: 6 (lower is better)
Translates to: ANGMVQCCRLRW*YNMRETSFVKL
Trigger: CAGCTTCACAAAGCTGGTTTCTCTCATGTTATATCACCATCTCAGTCTACAGCATTGAACCATTCCGTTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp CTCTTCATCCTCATCCACACTCATACTGTGATCTCCTaGAGGAGCAGTCAGTCTCTCTTCTATTTTACTGAG +
Preference number: 6 (lower is better)
Translates to: LFILIHTHTVIS*RSSQSLFYFTE
Trigger: CTCAGTAAAATAGAAGAGAGACTGACTGCTCCTTCAGGAGATCACAGTATGAGTGTGGATGAGGATGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp TCAATGGACTCTTCATCCTCATCCACACTCATACTGTaGTCTCCTGAAGGAGCAGTCAGTCTCTCTTCTATT +
Preference number: 6 (lower is better)
Translates to: SMDSSSSSTLIL*SPEGAVSLSSI
Trigger: AATAGAAGAGAGACTGACTGCTCCTTCAGGAGATCACAGTATGAGTGTGGATGAGGATGAAGAGTCCATTGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp TCTTCTCCCTTAGGTGCAATCACATTTCTCTGCATGTaGTTAATCAGGGCTATCATGGGAGCCATACATTCA +
Preference number: 6 (lower is better)
Translates to: SSPLGAITFLCM*LIRAIMGAIHS
Trigger: TGAATGTATGGCTCCCATGATAGCCCTGATTAAGCACATGCAGAGAAATGTGATTGCACCTAAGGGAGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp TCATGGCTTCATCCACAAATGTTAGCAGAGATTGGTTaGCTTCTCCTTGAAGCAGGAGCTTTAGTTTGCTAC +
Preference number: 6 (lower is better)
Translates to: SWLHPQMLAEIG*LLLEAGALVCY
Trigger: GTAGCAAACTAAAGCTCCTGCTTCAAGGAGAAGGCAACCAATCTCTGCTAACATTTGTGGATGAAGCCATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp TATTGTCCAGGAATCTCCAGTTCATTTTTCAGGAACTaGGCTTTGAACTCACTCATCCAGGGGGAATACTCT +
Preference number: 6 (lower is better)
Translates to: YCPGISSSFFRN*ALNSLIQGEYS
Trigger: AGAGTATTCCCCCTGGATGAGTGAGTTCAAAGCGCAGTTCCTGAAAAATGAACTGGAGATTCCTGGACAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp TCTTGGGTTTGGGTATGGAGAATACTTGGAGAGGCCTaGGTCTCAATAAACATCGGAGTAAGAACAGTACTA +
Preference number: 6 (lower is better)
Translates to: SWVWVWRILGEA*VSINIGVRTVL
Trigger: TAGTACTGTTCTTACTCCGATGTTTATTGAGACCCAGGCCTCTCCAAGTATTCTCCATACCCAAACCCAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp TTTCCTAGTTCATCTTTTGTATCAGAAACCCAGTCCTaGAAGAGCAGGTCAGGATTGGAGAGCTGGTCTAAG +
Preference number: 6 (lower is better)
Translates to: FPSSSFVSETQS*KSRSGLESWSK
Trigger: CTTAGACCAGCTCTCCAATCCTGACCTGCTCTTCAAGGACTGGGTTTCTGATACAAAAGATGAACTAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp ACAGGATTCTTTCCTAGTTCATCTTTTGTATCAGAAACCCAGTCCTaGAAGAGCAGGTCAGGATTGGAGAGCTGGTCTAAGGCGTTAATA +
Preference number: 6 (lower is better)
Translates to: TGFFPSSSFVSETQS*KSRSGLESWSKALI
Trigger: TATTAACGCCTTAGACCAGCTCTCCAATCCTGACCTGCTCTTCAAGGACTGGGTTTCTGATACAAAAGATGAACTAGGAAAGAATCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp GATCCGCACGTGATATTCAGGCAGTGGTTTGCTTTTTCCATCATATaGTCCAGGAATCTCCAGTTCATTTTTCAGGAACTGCGCTTTGAA +
Preference number: 6 (lower is better)
Translates to: DPHVIFRQWFAFSII*SRNLQFIFQELRFE
Trigger: TTCAAAGCGCAGTTCCTGAAAAATGAACTGGAGATTCCTGGACAATATGATGGAAAAAGCAAACCACTGCCTGAATATCACGTGCGGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp ACTTTTACCCGCTCATCAAATCCAGAGATCCGCACGTaGTATTCAGGCAGTGGTTTGCTTTTTCCATCATAT +
Preference number: 6 (lower is better)
Translates to: TFTRSSNPEIRT*YSGSGLLFPSY
Trigger: ATATGATGGAAAAAGCAAACCACTGCCTGAATATCACGTGCGGATCTCTGGATTTGATGAGCGGGTAAAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp GTAAAGCAAGACACTTGCAATAGACTGAAGGAAACTTaGCATCTGGTAAACATGATCCTCAGAAGCATCTGC +
Preference number: 6 (lower is better)
Translates to: VKQDTCNRLKET*HLVNMILRSIC
Trigger: GCAGATGCTTCTGAGGATCATGTTTACCAGATGCCAAGTTTCCTTCAGTCTATTGCAAGTGTCTTGCTTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CATGGACTCTGCCTAGCAATCCTTTTGAAAGTGGTTTaGAACAATTCTTCCATAATATGTCGCTGTTCCCGA +
Preference number: 6 (lower is better)
Translates to: HGLCLAILLKVV*NNSSIICRCSR
Trigger: TCGGGAACAGCGACATATTATGGAAGAATTGTTCCAAACCACTTTCAAAAGGATTGCTAGGCAGAGTCCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp ATCAAATCCAGAGATCCGCACGTGATATTCAGGCAGTaGTTTGCTTTTTCCATCATATTGTCCAGGAATCTC +
Preference number: 6 (lower is better)
Translates to: IKSRDPHVIFRQ*FAFSIILSRNL
Trigger: GAGATTCCTGGACAATATGATGGAAAAAGCAAACCACTGCCTGAATATCACGTGCGGATCTCTGGATTTGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp GTTTACTGGACTCTTCTCTTGCTGCTGAGGTGTTGTTaGCTTAATGGACCATTTGAGGAATTCTTGAACGCA +
Preference number: 6 (lower is better)
Translates to: VYWTLLLLLRCC*LNGPFEEFLNA
Trigger: TGCGTTCAAGAATTCCTCAAATGGTCCATTAAGCAAACAACACCTCAGCAGCAAGAGAAGAGTCCAGTAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp ACATGGACTCTGCCTAGCAATCCTTTTGAAAGTGGTTaGGAACAATTCTTCCATAATATGTCGCTGTTCCCG +
Preference number: 6 (lower is better)
Translates to: TWTLPSNPFESG*EQFFHNMSLFP
Trigger: CGGGAACAGCGACATATTATGGAAGAATTGTTCCAAACCACTTTCAAAAGGATTGCTAGGCAGAGTCCATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp CTGTGTGACACATGGACTCTGCCTAGCAATCCTTTTGAAAGTGGTTaGGAACAATTCTTCCATAATATGTCGCTGTTCCCGACAAAGTAT +
Preference number: 6 (lower is better)
Translates to: LCDTWTLPSNPFESG*EQFFHNMSLFPTKY
Trigger: ATACTTTGTCGGGAACAGCGACATATTATGGAAGAATTGTTCCAAACCACTTTCAAAAGGATTGCTAGGCAGAGTCCATGTGTCACACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp CTTAAGTTCTCCCAGAAAAGCTCGGAACAGGTTTTCTaGATGGTTTATCATCTCACTAGGATGAACTTCACC +
Preference number: 6 (lower is better)
Translates to: LKFSQKSSEQVF*MVYHLTRMNFT
Trigger: GGTGAAGTTCATCCTAGTGAGATGATAAACCATTCAGAAAACCTGTTCCGAGCTTTTCTGGGAGAACTTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp TTAATCAGGGCTATCATGGGAGCCATACATTCATGTTaGTTGAGCTCATCCATCTCTAACTCCATGATGTCA +
Preference number: 6 (lower is better)
Translates to: LIRAIMGAIHSC*LSSSISNSMMS
Trigger: TGACATCATGGAGTTAGAGATGGATGAGCTCAATCAACATGAATGTATGGCTCCCATGATAGCCCTGATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp GAAAGTCTTTACTCTTTAACTGTAAGTATAGGCCTGTaGTCTCCTCTGCTCGACAAAGTACAACTTCCAGAC +
Preference number: 6 (lower is better)
Translates to: ESLYSLTVSIGL*SPLLDKVQLPD
Trigger: GTCTGGAAGTTGTACTTTGTCGAGCAGAGGAGATCACAGGCCTATACTTACAGTTAAAGAGTAAAGACTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp AAGCTCATGGGCTCACAGATCATTTTCACTAAGACCTaGATAAGATTTGTATTACACAAGTCCTTCTCCAGG +
Preference number: 6 (lower is better)
Translates to: KLMGSQIIFTKT*IRFVLHKSFSR
Trigger: CCTGGAGAAGGACTTGTGTAATACAAATCTTATGCAGGTCTTAGTGAAAATGATCTGTGAGCCCATGAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp GAAGACACAGCTTATCAGAGAAATGGCACAGTTGTATaGAGCACAATGATAAAGTCTTCTCTTCTCCAGCAA +
Preference number: 6 (lower is better)
Translates to: EDTAYQRNGTVV*STMIKSSLLQQ
Trigger: TTGCTGGAGAAGAGAAGACTTTATCATTGTGCTGCATACAACTGTGCCATTTCTCTGATAAGCTGTGTCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp AATCGGTCCAATGTATTGGAAGGCAATCTGGTTTCATaGCTCCAGAAATTCCGAATAATTAGTTGGAGTCCA +
Preference number: 6 (lower is better)
Translates to: NRSNVLEGNLVS*LQKFRIISWSP
Trigger: TGGACTCCAACTAATTATTCGGAATTTCTGGAGCCATGAAACCAGATTGCCTTCCAATACATTGGACCGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp CCTGAAATTCACATTCTGACAGAGGATGCTCAAAAATaGGGTTTAGATAATCTGGGCTCATCCTGGTCATTT +
Preference number: 6 (lower is better)
Translates to: PEIHILTEDAQK*GLDNLGSSWSF
Trigger: AAATGACCAGGATGAGCCCAGATTATCTAAACCCCATTTTTGAGCATCCTCTGTCAGAATGTGAATTTCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp TTCATCCTTTCTCCGGATGTAGCTGTTACAAGGCTTTaGTTTATTTGTCCTCCCAGAGAGCCAAGTATTTGT +
Preference number: 6 (lower is better)
Translates to: FILSPDVAVTRL*FICPPREPSIC
Trigger: ACAAATACTTGGCTCTCTGGGAGGACAAATAAACAAAAGCCTTGTAACAGCTACATCCGGAGAAAGGATGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp GTGTCTAGCATACCATTTAAAACAGTGCTCACCATTTaGGGATTATCCGAAGATGACTCCATGAGCCTTGAT +
Preference number: 6 (lower is better)
Translates to: VSSIPFKTVLTI*GLSEDDSMSLD
Trigger: ATCAAGGCTCATGGAGTCATCTTCGGATAATCCCAAAATGGTGAGCACTGTTTTAAATGGTATGCTAGACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp CTGAAGCTTGTGTCTAGCATACCATTTAAAACAGTGCTCACCATTTaGGGATTATCCGAAGATGACTCCATGAGCCTTGATACAGCAATA +
Preference number: 6 (lower is better)
Translates to: LKLVSSIPFKTVLTI*GLSEDDSMSLDTAI
Trigger: TATTGCTGTATCAAGGCTCATGGAGTCATCTTCGGATAATCCCAAAATGGTGAGCACTGTTTTAAATGGTATGCTAGACACAAGCTTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp ACGTACTTCTTCATCCTTTCTCCGGATGTAGCTGTTACAAGGCTTTaGTTTATTTGTCCTCCCAGAGAGCCAAGTATTTGTACTACTTTA +
Preference number: 6 (lower is better)
Translates to: TYFFILSPDVAVTRL*FICPPREPSICTTL
Trigger: TAAAGTAGTACAAATACTTGGCTCTCTGGGAGGACAAATAAACAAAAGCCTTGTAACAGCTACATCCGGAGAAAGGATGAAGAAGTACGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp AGAAGATTTAACTGTGTGACACATGGACTCTGCCTAGCAATCCTTTaGAAAGTGGTTTGGAACAATTCTTCCATAATATGTCGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: RRFNCVTHGLCLAIL*KVVWNNSSIICRCS
Trigger: GGAACAGCGACATATTATGGAAGAATTGTTCCAAACCACTTTCAAAAGGATTGCTAGGCAGAGTCCATGTGTCACACAGTTAAATCTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp AGACACTCCTTCCAGCATTCAACAAGGGTTTTAATAATTTCAAGGTaGTGCCTAAACACAGCTCTTTTGGGATGGAAGACATGCTTCATT +
Preference number: 6 (lower is better)
Translates to: RHSFQHSTRVLIISR*CLNTALLGWKTCFI
Trigger: AATGAAGCATGTCTTCCATCCCAAAAGAGCTGTGTTTAGGCACAACCTTGAAATTATTAAAACCCTTGTTGAATGCTGGAAGGAGTGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp GGTGTTGTTTGCTTAATGGACCATTTGAGGAATTCTTaGACGCACCGTCCACAAAAATCTCTTAAAGTACTG +
Preference number: 6 (lower is better)
Translates to: GVVCLMDHLRNS*THRPQKSLKVL
Trigger: CAGTACTTTAAGAGATTTTTGTGGACGGTGCGTTCAAGAATTCCTCAAATGGTCCATTAAGCAAACAACACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp TGCTCACCATTTTGGGATTATCCGAAGATGACTCCATaGGCCTTGATACAGCAATATCAAGATTCTTCAACA +
Preference number: 6 (lower is better)
Translates to: CSPFWDYPKMTP*ALIQQYQDSST
Trigger: TGTTGAAGAATCTTGATATTGCTGTATCAAGGCTCATGGAGTCATCTTCGGATAATCCCAAAATGGTGAGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp TTCTTTATGCATCTCTTTCAGGAGTTTCATGGAGAGTaGGAAATTACTCTGCTTCCAGGCGCTTTCTATCAT +
Preference number: 6 (lower is better)
Translates to: FFMHLFQEFHGE*EITLLPGAFYH
Trigger: ATGATAGAAAGCGCCTGGAAGCAGAGTAATTTCTCACTCTCCATGAAACTCCTGAAAGAGATGCATAAAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp CTTTCCAGAAGATTTAACTGTGTGACACATGGACTCTaGCTAGCAATCCTTTTGAAAGTGGTTTGGAACAAT +
Preference number: 6 (lower is better)
Translates to: LSRRFNCVTHGL*LAILLKVVWNN
Trigger: ATTGTTCCAAACCACTTTCAAAAGGATTGCTAGGCAGAGTCCATGTGTCACACAGTTAAATCTTCTGGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS GCA 72 bp TTGTGCCTAAACACAGCTCTTTTGGGATGGAAGACATaGTTCATTAGAAAACGAAGCAATCGATTTGCTAAC +
Preference number: 6 (lower is better)
Translates to: LCLNTALLGWKT*FIRKRSNRFAN
Trigger: GTTAGCAAATCGATTGCTTCGTTTTCTAATGAAGCATGTCTTCCATCCCAAAAGAGCTGTGTTTAGGCACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp ATAAAGAATTTAATGCCAGCAATCGGTCCAATGTATTaGAAGGCAATCTGGTTTCATGGCTCCAGAAATTCC +
Preference number: 6 (lower is better)
Translates to: IKNLMPAIGPMY*KAIWFHGSRNS
Trigger: GGAATTTCTGGAGCCATGAAACCAGATTGCCTTCCAATACATTGGACCGATTGCTGGCATTAAATTCTTTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp TTGGGGGAATATAAAGAATTTAATGCCAGCAATCGGTCCAATGTATaGGAAGGCAATCTGGTTTCATGGCTCCAGAAATTCCGAATAATT +
Preference number: 6 (lower is better)
Translates to: LGEYKEFNASNRSNV*EGNLVSWLQKFRII
Trigger: AATTATTCGGAATTTCTGGAGCCATGAAACCAGATTGCCTTCCAATACATTGGACCGATTGCTGGCATTAAATTCTTTATATTCCCCCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp CCAGCTAAGGGCACAGCATATCGCTTCATCTCAATCTaGGGACGAATTGCTTTAAATGTAAAACCAAAAATT +
Preference number: 6 (lower is better)
Translates to: PAKGTAYRFISI*GRIALNVKPKI
Trigger: AATTTTTGGTTTTACATTTAAAGCAATTCGTCCTCAGATTGAGATGAAGCGATATGCTGTGCCCTTAGCTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp GGAGGCAAGTTATTAGCTATCACAATGCCTAATAACTaGATTCCCACAGAATTGTCTTTAGAATTAGGGTCC +
Preference number: 6 (lower is better)
Translates to: GGKLLAITMPNN*IPTELSLELGS
Trigger: GGACCCTAATTCTAAAGACAATTCTGTGGGAATTCAGTTATTAGGCATTGTGATAGCTAATAACTTGCCTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp ATTAGTTGGAGTCCAACGTTCTCGTCGATCAGTCCTTaGATCAGTACATCTTTTGCCAGTTTAAATATTTCC +
Preference number: 6 (lower is better)
Translates to: ISWSPTFSSISP*ISTSFASLNIS
Trigger: GGAAATATTTAAACTGGCAAAAGATGTACTGATTCAAGGACTGATCGACGAGAACGTTGGACTCCAACTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp AGCTTCAAAATACATGGCACTGGTTATGTCACAATTTaGGTCATAGGGAGGCAAGTTATTAGCTATCACAAT +
Preference number: 6 (lower is better)
Translates to: SFKIHGTGYVTI*VIGRQVISYHN
Trigger: ATTGTGATAGCTAATAACTTGCCTCCCTATGACCCAAATTGTGACATAACCAGTGCCATGTATTTTGAAGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CCA 72 bp TTCGCTGCTTATTATAAAAGGGTAGATAATGGCCTGTaGGTAGTTATCAGCAATTTCTTCCACAGTATGTTG +
Preference number: 6 (lower is better)
Translates to: FAAYYKRVDNGL*VVISNFFHSML
Trigger: CAACATACTGTGGAAGAAATTGCTGATAACTACCCACAGGCCATTATCTACCCTTTTATAATAAGCAGCGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp AACTGTGTGACACATGGACTCTGCCTAGCAATCCTTTaGAAAGTGGTTTGGAACAATTCTTCCATAATATGT +
Preference number: 6 (lower is better)
Translates to: NCVTHGLCLAIL*KVVWNNSSIIC
Trigger: ACATATTATGGAAGAATTGTTCCAAACCACTTTCAAAAGGATTGCTAGGCAGAGTCCATGTGTCACACAGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp AACCTGTCAGCAAGAGGAGGGAAGCCCTTCGCTATTTaGTTTAAGCAAACAATAAATTTGTCTTCCATAGTA +
Preference number: 6 (lower is better)
Translates to: NLSARGGKPFAI*FKQTINLSSIV
Trigger: TACTATGGAAGACAAATTTATTGTTTGCTTAAACAAAATAGCGAAGGGCTTCCCTCCTCTTGCTGACAGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp TATAAAGAATTTAATGCCAGCAATCGGTCCAATGTATaGGAAGGCAATCTGGTTTCATGGCTCCAGAAATTC +
Preference number: 6 (lower is better)
Translates to: YKEFNASNRSNV*EGNLVSWLQKF
Trigger: GAATTTCTGGAGCCATGAAACCAGATTGCCTTCCAATACATTGGACCGATTGCTGGCATTAAATTCTTTATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp CTTCATCCTTTCTCCGGATGTAGCTGTTACAAGGCTTTTGTTTATTaGTCCTCCCAGAGAGCCAAGTATTTGTACTACTTTAATTCTTAT +
Preference number: 6 (lower is better)
Translates to: LHPFSGCSCYKAFVY*SSQRAKYLYYFNSY
Trigger: ATAAGAATTAAAGTAGTACAAATACTTGGCTCTCTGGGAGGACAAATAAACAAAAGCCTTGTAACAGCTACATCCGGAGAAAGGATGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp TCACTCCACATTTTACTTAGGTCAAGAGAGTTCTCACTGACTATATaGACTGTAGAACAGTACTCAAGTTCTTTCCATTTAGAGAGGTTG +
Preference number: 6 (lower is better)
Translates to: SLHILLRSREFSLTI*TVEQYSSSFHLERL
Trigger: CAACCTCTCTAAATGGAAAGAACTTGAGTACTGTTCTACAGTCAATATAGTCAGTGAGAACTCTCTTGACCTAAGTAAAATGTGGAGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp AGTACAACTTCCAGACAAAGTGTCTTCATTACTCCATaGAATTTTGGCAGCAGAAAGAACAAAGCATTCAAG +
Preference number: 6 (lower is better)
Translates to: STTSRQSVFITP*NFGSRKNKAFK
Trigger: CTTGAATGCTTTGTTCTTTCTGCTGCCAAAATTTCATGGAGTAATGAAGACACTTTGTCTGGAAGTTGTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS TCA 72 bp ATGTTTAAGGTCTCCTCTGAATACTGCTCTATAATCTaGAGTAATCTAGGAAATTTCAGCCTGGCTTCAGAA +
Preference number: 6 (lower is better)
Translates to: MFKVSSEYCSII*SNLGNFSLASE
Trigger: TTCTGAAGCCAGGCTGAAATTTCCTAGATTACTTCAGATTATAGAGCAGTATTCAGAGGAGACCTTAAACAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp AGTAACTATGCAACCACTGCACTCGCCAAATTTCTCTaGTTTTTGATTCTTTATGCATCTCTTTCAGGAGTT +
Preference number: 6 (lower is better)
Translates to: SNYATTALAKFL*FLILYASLSGV
Trigger: AACTCCTGAAAGAGATGCATAAAGAATCAAAAACAAGAGAAATTTGGCGAGTGCAGTGGTTGCATAGTTACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp TTAGATAATCTGGGCTCATCCTGGTCATTTCAAGCAGAAAGTTTGTaGCTAAACTTAAAAAGTGGACTTCTATCTTGGGGGAATATAAAG +
Preference number: 6 (lower is better)
Translates to: LDNLGSSWSFQAESL*LNLKSGLLSWGNIK
Trigger: CTTTATATTCCCCCAAGATAGAAGTCCACTTTTTAAGTTTAGCAACAAACTTTCTGCTTGAAATGACCAGGATGAGCCCAGATTATCTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp CCACAACAGGATTCAGAAGTTCTCGGAGTTCTATTGGTTTTAATTTaGCCACCATCTTATAAACTATATCCAAACACACCTTTTGTCTTT +
Preference number: 6 (lower is better)
Translates to: PQQDSEVLGVLLVLI*PPSYKLYPNTPFVF
Trigger: AAAGACAAAAGGTGTGTTTGGATATAGTTTATAAGATGGTGGCAAAATTAAAACCAATAGAACTCCGAGAACTTCTGAATCCTGTTGTGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp GGGAAACAAATTCCACAACAGGATTCAGAAGTTCTCGGAGTTCTATaGGTTTTAATTTTGCCACCATCTTATAAACTATATCCAAACACA +
Preference number: 6 (lower is better)
Translates to: GKQIPQQDSEVLGVL*VLILPPSYKLYPNT
Trigger: TGTGTTTGGATATAGTTTATAAGATGGTGGCAAAATTAAAACCAATAGAACTCCGAGAACTTCTGAATCCTGTTGTGGAATTTGTTTCCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 90 bp TCAAGCAGAAAGTTTGTTGCTAAACTTAAAAAGTGGACTTCTATCTaGGGGGAATATAAAGAATTTAATGCCAGCAATCGGTCCAATGTA +
Preference number: 6 (lower is better)
Translates to: SSRKFVAKLKKWTSI*GEYKEFNASNRSNV
Trigger: TACATTGGACCGATTGCTGGCATTAAATTCTTTATATTCCCCCAAGATAGAAGTCCACTTTTTAAGTTTAGCAACAAACTTTCTGCTTGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp TCCTCAATTTCTGCTAAAGTCTGTACAGACTGTAACTaGGCGAGTCTACTTCTATATAACAGAACATCAATA +
Preference number: 6 (lower is better)
Translates to: SSISAKVCTDCN*ASLLLYNRTSI
Trigger: TATTGATGTTCTGTTATATAGAAGTAGACTCGCCAAGTTACAGTCTGTACAGACTTTAGCAGAAATTGAGGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp GATTCAGAAGTTCTCGGAGTTCTATTGGTTTTAATTTaGCCACCATCTTATAAACTATATCCAAACACACCT +
Preference number: 6 (lower is better)
Translates to: DSEVLGVLLVLI*PPSYKLYPNTP
Trigger: AGGTGTGTTTGGATATAGTTTATAAGATGGTGGCAAAATTAAAACCAATAGAACTCCGAGAACTTCTGAATC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9
CDS CAA 72 bp AAGTTTGTTGCTAAACTTAAAAAGTGGACTTCTATCTaGGGGGAATATAAAGAATTTAATGCCAGCAATCGG +
Preference number: 6 (lower is better)
Translates to: KFVAKLKKWTSI*GEYKEFNASNR
Trigger: CCGATTGCTGGCATTAAATTCTTTATATTCCCCCAAGATAGAAGTCCACTTTTTAAGTTTAGCAACAAACTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023352.9