Pregenerated sensors for PRKCI (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037643Ensembl transcript IDs: ENSMUST00000108249.9, ENSMUST00000130238.2
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTGCAGGGGAGGGCTGCGCGCGCCATGGCCACCAGCCCGTGGGCTaGAGGCATCATCAGGTCTTCAGGTTTTGGCAAGTGGCCTCGATG | + |
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Preference number: 1 (lower is better) Translates to: PAGEGCARHGHQPVG*RHHQVFRFWQVASM Trigger: CATCGAGGCCACTTGCCAAAACCTGAAGACCTGATGATGCCTGCAGCCCACGGGCTGGTGGCCATGGCGCGCGCAGCCCTCCCCTGCAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR GCA 90 bp | GCGCACGCACTGCACTTATTGGTCTGCTCCCTCGCATTTATGTCCTaGAGGGGAGGGCTGCGCGCGCCATGGCCACCAGCCCGTGGGCTG | + |
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Preference number: 1 (lower is better) Translates to: AHALHLLVCSLAFMS*RGGLRAPWPPARGL Trigger: CAGCCCACGGGCTGGTGGCCATGGCGCGCGCAGCCCTCCCCTGCAGGACATAAATGCGAGGGAGCAGACCAATAAGTGCAGTGCGTGCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CCA 90 bp | TATGTCCTGCAGGGGAGGGCTGCGCGCGCCATGGCCACCAGCCCGTaGGCTGCAGGCATCATCAGGTCTTCAGGTTTTGGCAAGTGGCCT | + |
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Preference number: 1 (lower is better) Translates to: YVLQGRAARAMATSP*AAGIIRSSGFGKWP Trigger: AGGCCACTTGCCAAAACCTGAAGACCTGATGATGCCTGCAGCCCACGGGCTGGTGGCCATGGCGCGCGCAGCCCTCCCCTGCAGGACATA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CCA 90 bp | TGCTCCCTCGCATTTATGTCCTGCAGGGGAGGGCTGCGCGCGCCATaGCCACCAGCCCGTGGGCTGCAGGCATCATCAGGTCTTCAGGTT | + |
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Preference number: 1 (lower is better) Translates to: CSLAFMSCRGGLRAP*PPARGLQASSGLQV Trigger: AACCTGAAGACCTGATGATGCCTGCAGCCCACGGGCTGGTGGCCATGGCGCGCGCAGCCCTCCCCTGCAGGACATAAATGCGAGGGAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR GCA 90 bp | ACTTATTGGTCTGCTCCCTCGCATTTATGTCCTGCAGGGGAGGGCTaGGCGCGCCATGGCCACCAGCCCGTGGGCTGCAGGCATCATCAG | + |
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Preference number: 1 (lower is better) Translates to: TYWSAPSHLCPAGEG*ARHGHQPVGCRHHQ Trigger: CTGATGATGCCTGCAGCCCACGGGCTGGTGGCCATGGCGCGCGCAGCCCTCCCCTGCAGGACATAAATGCGAGGGAGCAGACCAATAAGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CCA 90 bp | GGCCACCAGCCCGTGGGCTGCAGGCATCATCAGGTCTTCAGGTTTTaGCAAGTGGCCTCGATGGCCCCTTGTTGGCTTTATCAATGGGGG | + |
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Preference number: 1 (lower is better) Translates to: GHQPVGCRHHQVFRF*QVASMAPCWLYQWG Trigger: CCCCCATTGATAAAGCCAACAAGGGGCCATCGAGGCCACTTGCCAAAACCTGAAGACCTGATGATGCCTGCAGCCCACGGGCTGGTGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CCA 90 bp | CACACACTTCAACATGAAATGTGTCAGCGCACGCACTGCACTTATTaGTCTGCTCCCTCGCATTTATGTCCTGCAGGGGAGGGCTGCGCG | + |
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Preference number: 1 (lower is better) Translates to: HTLQHEMCQRTHCTY*SAPSHLCPAGEGCA Trigger: CGCGCAGCCCTCCCCTGCAGGACATAAATGCGAGGGAGCAGACCAATAAGTGCAGTGCGTGCGCTGACACATTTCATGTTGAAGTGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR TCA 90 bp | ATGATGTCATCCCGTCGAGTGTCACAACGCAGCAGAGGCTTTCTTTaGCAAGCTGTGTTGTTTCCTTTACACAAAGACCGTCCTTCCTCA | + |
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Preference number: 1 (lower is better) Translates to: MMSSRRVSQRSRGFL*QAVLFPLHKDRPSS Trigger: TGAGGAAGGACGGTCTTTGTGTAAAGGAAACAACACAGCTTGTCAAAGAAAGCCTCTGCTGCGTTGTGACACTCGACGGGATGACATCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR GCA 90 bp | AGGGCATCATATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCAGGACCTTTGGAAGAGCAATCAGTGCTC | + |
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Preference number: 1 (lower is better) Translates to: RASYLITDGCEPPCG*WDLNSGPLEEQSVL Trigger: GAGCACTGATTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATATGATGCCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CCA 90 bp | GTTGTTTCCTTTACACAAAGACCGTCCTTCCTCATTAGGAGTGTCTaGAGAGCAAGCATAAGCAGGGTCGACATGATTGTCAGGAAGCTA | + |
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Preference number: 1 (lower is better) Translates to: VVSFTQRPSFLIRSV*RASISRVDMIVRKL Trigger: TAGCTTCCTGACAATCATGTCGACCCTGCTTATGCTTGCTCTCCAGACACTCCTAATGAGGAAGGACGGTCTTTGTGTAAAGGAAACAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CAA 90 bp | TGGCCACCAGCCCGTGGGCTGCAGGCATCATCAGGTCTTCAGGTTTaGGCAAGTGGCCTCGATGGCCCCTTGTTGGCTTTATCAATGGGG | + |
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Preference number: 2 (lower is better) Translates to: WPPARGLQASSGLQV*ASGLDGPLLALSMG Trigger: CCCCATTGATAAAGCCAACAAGGGGCCATCGAGGCCACTTGCCAAAACCTGAAGACCTGATGATGCCTGCAGCCCACGGGCTGGTGGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR CCA 90 bp | GACACTGTGCACTTCAACAGCTCTCAGTCTAAAATGCCCCAAGGGAGAGCACCAGGCAAGTGGCCTCGATaGCCCCTTGTTGGCTTTATC | + |
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Preference number: 2 (lower is better) Translates to: DTVHFNSSQSKMPQGRAPGKWPR*PLVGFI Trigger: GATAAAGCCAACAAGGGGCCATCGAGGCCACTTGCC...TGGTGCTCTCCCTTGGGGCATTTTAGACTGAGAGCTGTTGAAGTGCACAGTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR CCA 90 bp | GCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACACTTCAATGGCCACCAGCCCGTaGGCTGCAGGCATCATCAGG | + |
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Preference number: 2 (lower is better) Translates to: AAFRLRQLFQVLGETHTSMATSP*AAGIIR Trigger: CCTGATGATGCCTGCAGCCCACGGGCTGGTGGCCAT...TGAAGTGTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR GCA 90 bp | GACACTGTGCACTTCAACAGCTCTCAGTCTAAAATGCCCCAAGGGAGAGCACCAACCGAGAGCGACTTCTaGAGGGGCAACATAAAATGC | + |
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Preference number: 2 (lower is better) Translates to: DTVHFNSSQSKMPQGRAPTESDF*RGNIKC Trigger: GCATTTTATGTTGCCCCTGCAGAAGTCGCTCTCGGT...TGGTGCTCTCCCTTGGGGCATTTTAGACTGAGAGCTGTTGAAGTGCACAGTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CAA 90 bp | GATGATGTCATCCCGTCGAGTGTCACAACGCAGCAGAGGCTTTCTTaGACAAGCTGTGTTGTTTCCTTTACACAAAGACCGTCCTTCCTC | + |
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Preference number: 2 (lower is better) Translates to: DDVIPSSVTTQQRLS*TSCVVSFTQRPSFL Trigger: GAGGAAGGACGGTCTTTGTGTAAAGGAAACAACACAGCTTGTCAAAGAAAGCCTCTGCTGCGTTGTGACACTCGACGGGATGACATCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR TCA 90 bp | GCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACACTTCAGAGGAAATCTTAAACTaGGGGACCTCGGCAACCAGT | + |
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Preference number: 2 (lower is better) Translates to: AAFRLRQLFQVLGETHTSEEILN*GTSATS Trigger: ACTGGTTGCCGAGGTCCCTCAGTTTAAGATTTCCTC...TGAAGTGTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR TCA 90 bp | GCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACACTTCACTCGAATCCTGCCTCTaGACACACATCAGCATGCTA | + |
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Preference number: 2 (lower is better) Translates to: AAFRLRQLFQVLGETHTSLESCL*THISML Trigger: TAGCATGCTGATGTGTGTTCAGAGGCAGGATTCGAG...TGAAGTGTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR CCA 90 bp | GGTGAGGGTAGGGAAGACATACAACTTGAATTTACTCATCTAAGTTTGTTGACAGAGTCCCAGGCAGGCTaGACACTGTGCACTTCAACA | + |
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Preference number: 2 (lower is better) Translates to: GEGREDIQLEFTHLSLLTESQAG*TLCTST Trigger: TGTTGAAGTGCACAGTGTCCAGCCTGCCTGGGACTC...TGTCAACAAACTTAGATGAGTAAATTCAAGTTGTATGTCTTCCCTACCCTCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR CCA 90 bp | GCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACACTTCAAATGCTTTTCTAAGCTaGCTAAGAAGTGAGAGCCTC | + |
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Preference number: 2 (lower is better) Translates to: AAFRLRQLFQVLGETHTSNAFLS*LRSESL Trigger: GAGGCTCTCACTTCTTAGCCAGCTTAGAAAAGCATT...TGAAGTGTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR CCA 90 bp | GCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACACTTCAAACCCTGCCCTGAAATaGATTTCACTCTGTATCACA | + |
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Preference number: 2 (lower is better) Translates to: AAFRLRQLFQVLGETHTSNPALK*ISLCIT Trigger: TGTGATACAGAGTGAAATCCATTTCAGGGCAGGGTT...TGAAGTGTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR CCA 90 bp | GGTGAGGGTAGGGAAGACATACAACTTGAATTTACTCATCTAAGTTTGTTGACATCGATGGCCCCTTGTTaGCTTTATCAATGGGGGTTC | + |
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Preference number: 2 (lower is better) Translates to: GEGREDIQLEFTHLSLLTSMAPC*LYQWGF Trigger: GAACCCCCATTGATAAAGCCAACAAGGGGCCATCGA...TGTCAACAAACTTAGATGAGTAAATTCAAGTTGTATGTCTTCCCTACCCTCACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR TCA 90 bp | GTGAATGCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACTTCTATTTATCTGTATaGTTCCTAGTCTCCAACAGG | + |
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Preference number: 2 (lower is better) Translates to: VNAAFRLRQLFQVLGETHFYLSV*FLVSNR Trigger: CCTGTTGGAGACTAGGAATCATACAGATAAATAGAA...GTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGCATTCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR CCA 90 bp | GTGAATGCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACTTACATAGTTATCCGTaGTCATCATCATTGGTCTTG | + |
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Preference number: 2 (lower is better) Translates to: VNAAFRLRQLFQVLGETHLHSYP*SSSLVL Trigger: CAAGACCAATGATGATGACCACGGATAACTATGTAA...GTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGCATTCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CAA 90 bp | TGGCTTTATCAATGGGGGTTCTCACTGCTCTCTGTCTTACATTACTaGAAAATGCATGACACAAACTTGACACAACTCACACTTCTAATG | + |
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Preference number: 2 (lower is better) Translates to: WLYQWGFSLLSVLHY*KMHDTNLTQLTLLM Trigger: CATTAGAAGTGTGAGTTGTGTCAAGTTTGTGTCATGCATTTTCAAGTAATGTAAGACAGAGAGCAGTGAGAACCCCCATTGATAAAGCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR TCA 90 bp | GGTGAGGGTAGGGAAGACATACAACTTGAATTTACTCATCTAAGTTTGTTGACAGTAGCATTCTCCAAGTaGTTTTCAAATGCCTACAGG | + |
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Preference number: 2 (lower is better) Translates to: GEGREDIQLEFTHLSLLTVAFSK*FSNAYR Trigger: CCTGTAGGCATTTGAAAATCACTTGGAGAATGCTAC...TGTCAACAAACTTAGATGAGTAAATTCAAGTTGTATGTCTTCCCTACCCTCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR GCA 72 bp | TCTGCTCCCTCGCATTTATGTCCTGCAGGGGAGGGCTaGGCGCGCCATGGCCACCAGCCCGTGGGCTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: SAPSHLCPAGEG*ARHGHQPVGCR Trigger: CCTGCAGCCCACGGGCTGGTGGCCATGGCGCGCGCAGCCCTCCCCTGCAGGACATAAATGCGAGGGAGCAGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CCA 72 bp | CAGGGGAGGGCTGCGCGCGCCATGGCCACCAGCCCGTaGGCTGCAGGCATCATCAGGTCTTCAGGTTTTGGC | + |
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Preference number: 3 (lower is better) Translates to: QGRAARAMATSP*AAGIIRSSGFG Trigger: GCCAAAACCTGAAGACCTGATGATGCCTGCAGCCCACGGGCTGGTGGCCATGGCGCGCGCAGCCCTCCCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CCA 72 bp | GCATTTATGTCCTGCAGGGGAGGGCTGCGCGCGCCATaGCCACCAGCCCGTGGGCTGCAGGCATCATCAGGT | + |
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Preference number: 3 (lower is better) Translates to: AFMSCRGGLRAP*PPARGLQASSG Trigger: ACCTGATGATGCCTGCAGCCCACGGGCTGGTGGCCATGGCGCGCGCAGCCCTCCCCTGCAGGACATAAATGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR GCA 72 bp | CTGCACTTATTGGTCTGCTCCCTCGCATTTATGTCCTaGAGGGGAGGGCTGCGCGCGCCATGGCCACCAGCC | + |
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Preference number: 3 (lower is better) Translates to: LHLLVCSLAFMS*RGGLRAPWPPA Trigger: GGCTGGTGGCCATGGCGCGCGCAGCCCTCCCCTGCAGGACATAAATGCGAGGGAGCAGACCAATAAGTGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR TCA 72 bp | AAGCGCCCATCCCTCTGCCTGTCTCCCCGGAGACTCTaGGAGAAGGAGGCTTCCACCACATACAGAGAGTTT | + |
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Preference number: 3 (lower is better) Translates to: KRPSLCLSPRRL*EKEASTTYREF Trigger: AAACTCTCTGTATGTGGTGGAAGCCTCCTTCTCTCAGAGTCTCCGGGGAGACAGGCAGAGGGATGGGCGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CCA 72 bp | CCCGTGGGCTGCAGGCATCATCAGGTCTTCAGGTTTTaGCAAGTGGCCTCGATGGCCCCTTGTTGGCTTTAT | + |
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Preference number: 3 (lower is better) Translates to: PVGCRHHQVFRF*QVASMAPCWLY Trigger: ATAAAGCCAACAAGGGGCCATCGAGGCCACTTGCCAAAACCTGAAGACCTGATGATGCCTGCAGCCCACGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR GCA 72 bp | TGGACACTGTGCACTTCAACAGCTCTCAGTCTAAAATaGCCCAAGGGAGAGCACCACTTAGGTCACAGCATA | + |
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Preference number: 3 (lower is better) Translates to: WTLCTSTALSLK*PKGEHHLGHSI Trigger: TATGCTGTGACCTAAGTGGTGCTCTCCCTTGGGGCATTTTAGACTGAGAGCTGTTGAAGTGCACAGTGTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR TCA 72 bp | CTGTTCCAGGTCTTAGGGGAAACACACACTTCAACATaGAATGTGTCAGCGCACGCACTGCACTTATTGGTC | + |
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Preference number: 3 (lower is better) Translates to: LFQVLGETHTST*NVSAHALHLLV Trigger: GACCAATAAGTGCAGTGCGTGCGCTGACACATTTCATGTTGAAGTGTGTGTTTCCCCTAAGACCTGGAACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR GCA 72 bp | CACACACTTCAACATGAAATGTGTCAGCGCACGCACTaGACTTATTGGTCTGCTCCCTCGCATTTATGTCCT | + |
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Preference number: 3 (lower is better) Translates to: HTLQHEMCQRTH*TYWSAPSHLCP Trigger: AGGACATAAATGCGAGGGAGCAGACCAATAAGTGCAGTGCGTGCGCTGACACATTTCATGTTGAAGTGTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR CAA 90 bp | GTGAATGCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACCCGTGGTCATCATCATaGGTCTTGAATTTCACCGCA | + |
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Preference number: 3 (lower is better) Translates to: VNAAFRLRQLFQVLGETHPWSSS*VLNFTA Trigger: TGCGGTGAAATTCAAGACCAATGATGATGACCACGG...GTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGCATTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR GCA 72 bp | ACTTTAGACGTCTACTTTTTCCTGTATGTGAGCAGCTaGCACTCTCGAATCCTGCCTCTGAACACACATCAG | + |
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Preference number: 3 (lower is better) Translates to: TLDVYFFLYVSS*HSRILPLNTHQ Trigger: CTGATGTGTGTTCAGAGGCAGGATTCGAGAGTGGCAGCTGCTCACATACAGGAAAAAGTAGACGTCTAAAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR-3UTR CAA 90 bp | GTGAATGCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACATGCATGACACAAACTaGACACAACTCACACTTCTA | + |
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Preference number: 3 (lower is better) Translates to: VNAAFRLRQLFQVLGETHMHDTN*TQLTLL Trigger: TAGAAGTGTGAGTTGTGTCAAGTTTGTGTCATGCAT...GTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGCATTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CCA 72 bp | AACTGTGTGTGTGTGTGTGTGTTACATAGTTATCCGTaGTCATCATCATTGGTCTTGAATTTCACCGCAGAC | + |
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Preference number: 3 (lower is better) Translates to: NCVCVCVLHSYP*SSSLVLNFTAD Trigger: GTCTGCGGTGAAATTCAAGACCAATGATGATGACCACGGATAACTATGTAACACACACACACACACACAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR TCA 72 bp | CTCACTGCTCTCTGTCTTACATTACTTGAAAATGCATaGCACAAACTTGACACAACTCACACTTCTAATGAA | + |
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Preference number: 3 (lower is better) Translates to: LTALCLTLLENA*HKLDTTHTSNE Trigger: TTCATTAGAAGTGTGAGTTGTGTCAAGTTTGTGTCATGCATTTTCAAGTAATGTAAGACAGAGAGCAGTGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CAA 72 bp | GCCCGTGGGCTGCAGGCATCATCAGGTCTTCAGGTTTaGGCAAGTGGCCTCGATGGCCCCTTGTTGGCTTTA | + |
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Preference number: 4 (lower is better) Translates to: ARGLQASSGLQV*ASGLDGPLLAL Trigger: TAAAGCCAACAAGGGGCCATCGAGGCCACTTGCCAAAACCTGAAGACCTGATGATGCCTGCAGCCCACGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR GCA 90 bp | GACACTGTGCACTTCAACAGCTCTCAGTCTAAAATGCCCCAAGGGAGAGCACCAGAGTGCCGCAGAAAGTaGTGGTTGTGTCTCCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: DTVHFNSSQSKMPQGRAPECRRK*WLCLQA Trigger: GGCCTGGAGACACAACCAGCACTTTCTGCGGCACTC...TGGTGCTCTCCCTTGGGGCATTTTAGACTGAGAGCTGTTGAAGTGCACAGTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR GCA 90 bp | CAGGGGCAACATAAAATGCTAACTGTGAGCAGGCTGACGGGTGGATATCCATGCTGTGTGTGGTCTGGATaGATGGTCTGGTCCATTGGC | + |
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Preference number: 4 (lower is better) Translates to: QGQHKMLTVSRLTGGYPCCVWSG*MVWSIG Trigger: GCCAATGGACCAGACCATGCATCCAGACCACACACA...GCATGGATATCCACCCGTCAGCCTGCTCACAGTTAGCATTTTATGTTGCCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR GCA 90 bp | GACACTGTGCACTTCAACAGCTCTCAGTCTAAAATGCCCCAAGGGAGAGCACCACGCGGGATGCGGATCTaGTTTTCCAAAATGACTTGG | + |
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Preference number: 4 (lower is better) Translates to: DTVHFNSSQSKMPQGRAPRGMRI*FSKMTW Trigger: CCAAGTCATTTTGGAAAAGCAGATCCGCATCCCGCG...TGGTGCTCTCCCTTGGGGCATTTTAGACTGAGAGCTGTTGAAGTGCACAGTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CCA 90 bp | GTGAATGCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACCATCATGGGTTCCGGTaGCAAAGAGTGCCGCCCACA | + |
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Preference number: 4 (lower is better) Translates to: VNAAFRLRQLFQVLGETHHHGFR*QRVPPT Trigger: TGTGGGCGGCACTCTTTGCCACCGGAACCCATGATG...GTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGCATTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CAA 72 bp | CCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTaGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: PPCGCWDLNSGP*EEQSVLLTTEP Trigger: TGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCAGGACCTTTGGAAGAGCAATCAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWD*NSGPLEEQSVL Trigger: GAGCACTGATTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR TCA 90 bp | AGGAGCTCAGGAAGAGCTGGAACTGTGTGTGTGTGTGTGTGTTACATAGTTATCCCCACCAGTCAACGCTaGAGCCATAATCTTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: RSSGRAGTVCVCVCYIVIPTSQR*SHNLLL Trigger: GAGGAGAAGATTATGGCTTCAGCGTTGACTGGTGGG...GATAACTATGTAACACACACACACACACACAGTTCCAGCTCTTCCTGAGCTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CCA 90 bp | CAAGCTGTGTTGTTTCCTTTACACAAAGACCGTCCTTCCTCATTAGGAGTGTCTGTGCAGATGGCACAGTaGGCGCGCCTATTGAAACGT | + |
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Preference number: 4 (lower is better) Translates to: QAVLFPLHKDRPSSLGVSVQMAQ*ARLLKR Trigger: ACGTTTCAATAGGCGCGCCCACTGTGCCATCTGCAC...AGACACTCCTAATGAGGAAGGACGGTCTTTGTGTAAAGGAAACAACACAGCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CCA 90 bp | GACACTGTGCACTTCAACAGCTCTCAGTCTAAAATGCCCCAAGGGAGAGCACCAAATGTCATCATCATCTaGAGTGAGCTGGACTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: DTVHFNSSQSKMPQGRAPNVIII*SELDWF Trigger: GAACCAGTCCAGCTCACTCCAGATGATGATGACATT...TGGTGCTCTCCCTTGGGGCATTTTAGACTGAGAGCTGTTGAAGTGCACAGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CCA 90 bp | GACACTGTGCACTTCAACAGCTCTCAGTCTAAAATGCCCCAAGGGAGAGCACCAAGAAGACACTGTACATaGGTCTCCTTCCTCATCTAT | + |
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Preference number: 4 (lower is better) Translates to: DTVHFNSSQSKMPQGRAPRRHCT*VSFLIY Trigger: ATAGATGAGGAAGGAGACCCATGTACAGTGTCTTCT...TGGTGCTCTCCCTTGGGGCATTTTAGACTGAGAGCTGTTGAAGTGCACAGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CCA 90 bp | GACACTGTGCACTTCAACAGCTCTCAGTCTAAAATGCCCCAAGGGAGAGCACCATTCTCCAGAAATGTTTaGTTTAAAGGGTGGAACCAC | + |
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Preference number: 4 (lower is better) Translates to: DTVHFNSSQSKMPQGRAPFSRNV*FKGWNH Trigger: GTGGTTCCACCCTTTAAACCAAACATTTCTGGAGAA...TGGTGCTCTCCCTTGGGGCATTTTAGACTGAGAGCTGTTGAAGTGCACAGTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR TCA 90 bp | GCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACACTTCACCCAGTCCACATTTCTaGAGAATGGATGTCCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: AAFRLRQLFQVLGETHTSPSPHF*RMDVLE Trigger: TTCAAGGACATCCATTCTTCAGAAATGTGGACTGGG...TGAAGTGTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR GCA 90 bp | CAAGCTGTGTTGTTTCCTTTACACAAAGACCGTCCTTCCTCATTAGGAGTGTCTTCAGACACACTCTTCTaGAGACATCAAGAGGGGGTT | + |
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Preference number: 4 (lower is better) Translates to: QAVLFPLHKDRPSSLGVSSDTLF*RHQEGV Trigger: AACCCCCTCTTGATGTCTGCAGAAGAGTGTGTCTGA...AGACACTCCTAATGAGGAAGGACGGTCTTTGTGTAAAGGAAACAACACAGCTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR TCA 90 bp | AGGAGCTCAGGAAGAGCTGGAACTGTGTGTGTGTGTGTGTGTTACATAGTTATCTTGAAACGTTTGGCTTaGAAAGTGTGGCCATTTGCA | + |
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Preference number: 4 (lower is better) Translates to: RSSGRAGTVCVCVCYIVILKRLA*KVWPFA Trigger: TGCAAATGGCCACACTTTTCAAGCCAAACGTTTCAA...GATAACTATGTAACACACACACACACACACAGTTCCAGCTCTTCCTGAGCTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR GCA 90 bp | AAAACACAGACTCACACTCCAATAAGAAATATGGCCACAAGAAAAAGAATAACCCTTTCTCCACCGGCGTaGCCCTCTCCGGTAAATGGA | + |
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Preference number: 4 (lower is better) Translates to: KTQTHTPIRNMATRKRITLSPPA*PSPVNG Trigger: TCCATTTACCGGAGAGGGGCACGCCGGTGGAGAAAG...GGTTATTCTTTTTCTTGTGGCCATATTTCTTATTGGAGTGTGAGTCTGTGTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CCA 90 bp | GTGAATGCTGCCTTTAGATTAAGACAGCTGTTCCAGGTCTTAGGGGAAACACACACCCAATCGTTCCTTTaGGTCCTTGTTGAGAAAACT | + |
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Preference number: 4 (lower is better) Translates to: VNAAFRLRQLFQVLGETHTQSFL*VLVEKT Trigger: AGTTTTCTCAACAAGGACCCAAAGGAACGATTGGGT...GTGTGTTTCCCCTAAGACCTGGAACAGCTGTCTTAATCTAAAGGCAGCATTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR TCA 90 bp | TCACATGTTAGCTATGACATAGGAGCTCAGGAAGAGCTGGAACTGTGTGTGTGTAAGAATGGATGTCCTTaGATGTCAGCAAATCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: SHVSYDIGAQEELELCVCKNGCP*MSANPV Trigger: AACTGGATTTGCTGACATTCAAGGACATCCATTCTT...ACACACACACAGTTCCAGCTCTTCCTGAGCTCCTATGTCATAGCTAACATGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR GCA 90 bp | GAAAATGCTACAATCGTTCTTTCTGTAGCTACTTTAGACGTCTACTTTTTCCTGGGAACCACCTGCTTTTaGTCCATCATGTCCCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: ENATIVLSVATLDVYFFLGTTCF*SIMSQS Trigger: GGACTGGGACATGATGGAGCAAAAGCAGGTGGTTCC...CAGGAAAAAGTAGACGTCTAAAGTAGCTACAGAAAGAACGATTGTAGCATTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CCA 90 bp | CAAGCTGTGTTGTTTCCTTTACACAAAGACCGTCCTTCCTCATTAGGAGTGTCTCACATTTCTGAAGAATaGATGTCCTTGAATGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: QAVLFPLHKDRPSSLGVSHISEE*MSLNVS Trigger: GCTGACATTCAAGGACATCCATTCTTCAGAAATGTG...AGACACTCCTAATGAGGAAGGACGGTCTTTGTGTAAAGGAAACAACACAGCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CAA 72 bp | CAATGGGGGTTCTCACTGCTCTCTGTCTTACATTACTaGAAAATGCATGACACAAACTTGACACAACTCACA | + |
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Preference number: 4 (lower is better) Translates to: QWGFSLLSVLHY*KMHDTNLTQLT Trigger: TGTGAGTTGTGTCAAGTTTGTGTCATGCATTTTCAAGTAATGTAAGACAGAGAGCAGTGAGAACCCCCATTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR GCA 90 bp | GAAAATGCTACAATCGTTCTTTCTGTAGCTACTTTAGACGTCTACTTTTTCCTGCTCCCTGGTGTTCATTaGCTCCTTTTCTTCACCAAC | + |
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Preference number: 4 (lower is better) Translates to: ENATIVLSVATLDVYFFLLPGVH*LLFFTN Trigger: GTTGGTGAAGAAAAGGAGGCAATGAACACCAGGGAG...CAGGAAAAAGTAGACGTCTAAAGTAGCTACAGAAAGAACGATTGTAGCATTTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CCA 90 bp | GAAAATGCTACAATCGTTCTTTCTGTAGCTACTTTAGACGTCTACTTTTTCCTGCTGCAGAGTAAAACCTaGCATGCTCTTCAGGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: ENATIVLSVATLDVYFFLLQSKT*HALQEV Trigger: AACTTCCTGAAGAGCATGCCAGGTTTTACTCTGCAG...CAGGAAAAAGTAGACGTCTAAAGTAGCTACAGAAAGAACGATTGTAGCATTTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR TCA 90 bp | CGTAGCATTCTCCAAGTGATTTTCAAATGCCTACAGGTTTTAAATCATCACAAGTATCCTCATCGTCATTaGCGAGCTCTTTCTTCACAA | + |
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Preference number: 4 (lower is better) Translates to: RSILQVIFKCLQVLNHHKYPHRH*RALSSQ Trigger: TTGTGAAGAAAGAGCTCGTCAATGACGATGAGGATA...CTTGTGATGATTTAAAACCTGTAGGCATTTGAAAATCACTTGGAGAATGCTACG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR GCA 90 bp | GAAAATGCTACAATCGTTCTTTCTGTAGCTACTTTAGACGTCTACTTTTTCCTGACTCTTCAGTACACTTaGTGCTTTTACAGACAGAGA | + |
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Preference number: 4 (lower is better) Translates to: ENATIVLSVATLDVYFFLTLQYT*CFYRQR Trigger: TCTCTGTCTGTAAAAGCAGCAAGTGTACTGAAGAGT...CAGGAAAAAGTAGACGTCTAAAGTAGCTACAGAAAGAACGATTGTAGCATTTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CCA 90 bp | CGTAGCATTCTCCAAGTGATTTTCAAATGCCTACAGGTTTTAAATCATCACAAGACGCTCTGGTACACATaGAAATACATGAATCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: RSILQVIFKCLQVLNHHKTLWYT*KYMNQE Trigger: CTCTTGATTCATGTATTTCCATGTGTACCAGAGCGT...CTTGTGATGATTTAAAACCTGTAGGCATTTGAAAATCACTTGGAGAATGCTACG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR TCA 90 bp | GAAAATGCTACAATCGTTCTTTCTGTAGCTACTTTAGACGTCTACTTTTTCCTGACACATGGAAATACATaGATCAAGAGTTCAGAATCC | + |
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Preference number: 4 (lower is better) Translates to: ENATIVLSVATLDVYFFLTHGNT*IKSSES Trigger: GGATTCTGAACTCTTGATTCATGTATTTCCATGTGT...CAGGAAAAAGTAGACGTCTAAAGTAGCTACAGAAAGAACGATTGTAGCATTTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| 3UTR CAA 72 bp | TCTGTCTTACATTACTTGAAAATGCATGACACAAACTaGACACAACTCACACTTCTAATGAAACGTAGCATT | + |
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Preference number: 4 (lower is better) Translates to: SVLHYLKMHDTN*TQLTLLMKRSI Trigger: AATGCTACGTTTCATTAGAAGTGTGAGTTGTGTCAAGTTTGTGTCATGCATTTTCAAGTAATGTAAGACAGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS CCA 90 bp | GGATTATATGGAATTACTGTCTGTGTGTGGTCTGGATGCATGGTCTaGTCCATTGGCATCATGGGTTCCGGTGGCAAAGAGTGCCGCCCA | + |
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Preference number: 5 (lower is better) Translates to: GLYGITVCVWSGCMV*SIGIMGSGGKECRP Trigger: TGGGCGGCACTCTTTGCCACCGGAACCCATGATGCCAATGGACCAGACCATGCATCCAGACCACACACAGACAGTAATTCCATATAATCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CAA 90 bp | CAGGGGCAACATAAAATGCTAACTGTGAGCAGGCTGACGGGTGGATATCCATGCTGGAACCACCTGCTTTaGCTCCATCATGTCCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: QGQHKMLTVSRLTGGYPCWNHLL*LHHVPV Trigger: GACTGGGACATGATGGAGCAAAAGCAGGTGGTTCCA...GCATGGATATCCACCCGTCAGCCTGCTCACAGTTAGCATTTTATGTTGCCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CAA 90 bp | GACACTGTGCACTTCAACAGCTCTCAGTCTAAAATGCCCCAAGGGAGAGCACCAACCAGCAGTTTGCAGTaGATGCACTTGTATCCTTGT | + |
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Preference number: 5 (lower is better) Translates to: DTVHFNSSQSKMPQGRAPTSSLQ*MHLYPC Trigger: ACAAGGATACAAGTGCATCAACTGCAAACTGCTGGT...TGGTGCTCTCCCTTGGGGCATTTTAGACTGAGAGCTGTTGAAGTGCACAGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CAA 90 bp | CAGGGGCAACATAAAATGCTAACTGTGAGCAGGCTGACGGGTGGATATCCATGCATTGAAACGTTTGGCTaGAAAAGTGTGGCCATTTGC | + |
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Preference number: 5 (lower is better) Translates to: QGQHKMLTVSRLTGGYPCIETFG*KSVAIC Trigger: GCAAATGGCCACACTTTTCAAGCCAAACGTTTCAAT...GCATGGATATCCACCCGTCAGCCTGCTCACAGTTAGCATTTTATGTTGCCCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CAA 90 bp | CGTAGCATTCTCCAAGTGATTTTCAAATGCCTACAGGTTTTAAATCATCACAAGGAAAAGTGTGGCCATTaGCACAATACAGCTTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: RSILQVIFKCLQVLNHHKEKCGH*HNTAFS Trigger: GGAGAAAGCTGTATTGTGCAAATGGCCACACTTTTC...CTTGTGATGATTTAAAACCTGTAGGCATTTGAAAATCACTTGGAGAATGCTACG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CAA 90 bp | AAAACACAGACTCACACTCCAATAAGAAATATGGCCACAAGAAAAAGAATAACCTCTCCCTGGTGTTCATaGCCTCCTTTTCTTCACCAA | + |
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Preference number: 5 (lower is better) Translates to: KTQTHTPIRNMATRKRITSPWCS*PPFLHQ Trigger: TTGGTGAAGAAAAGGAGGCAATGAACACCAGGGAGA...GGTTATTCTTTTTCTTGTGGCCATATTTCTTATTGGAGTGTGAGTCTGTGTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CAA 90 bp | GGTGAGGGTAGGGAAGACATACAACTTGAATTTACTCATCTAAGTTTGTTGACAAACTCTTCAGTACACTaGCTGCTTTTACAGACAGAG | + |
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Preference number: 5 (lower is better) Translates to: GEGREDIQLEFTHLSLLTNSSVH*LLLQTE Trigger: CTCTGTCTGTAAAAGCAGCAAGTGTACTGAAGAGTT...TGTCAACAAACTTAGATGAGTAAATTCAAGTTGTATGTCTTCCCTACCCTCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CAA 90 bp | CGTAGCATTCTCCAAGTGATTTTCAAATGCCTACAGGTTTTAAATCATCACAAGGTGAACGGCTGCTCATaGTCAAAAGAACACATATCT | + |
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Preference number: 5 (lower is better) Translates to: RSILQVIFKCLQVLNHHKVNGCS*SKEHIS Trigger: AGATATGTGTTCTTTTGACAATGAGCAGCCGTTCAC...CTTGTGATGATTTAAAACCTGTAGGCATTTGAAAATCACTTGGAGAATGCTACG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CAA 90 bp | GAAAATGCTACAATCGTTCTTTCTGTAGCTACTTTAGACGTCTACTTTTTCCTGATATCCTCATCGTCATaGACGAGCTCTTTCTTCACA | + |
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Preference number: 5 (lower is better) Translates to: ENATIVLSVATLDVYFFLISSSS*TSSFFT Trigger: TGTGAAGAAAGAGCTCGTCAATGACGATGAGGATAT...CAGGAAAAAGTAGACGTCTAAAGTAGCTACAGAAAGAACGATTGTAGCATTTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS-3UTR CAA 90 bp | GAAAATGCTACAATCGTTCTTTCTGTAGCTACTTTAGACGTCTACTTTTTCCTGTCCTTTGGGTCCTTGTaGAGAAAACTCTTCAGTACA | + |
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Preference number: 5 (lower is better) Translates to: ENATIVLSVATLDVYFFLSFGSL*RKLFST Trigger: TGTACTGAAGAGTTTTCTCAACAAGGACCCAAAGGA...CAGGAAAAAGTAGACGTCTAAAGTAGCTACAGAAAGAACGATTGTAGCATTTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS GCA 72 bp | TGGTCCATTGGCATCATGGGTTCCGGTGGCAAAGAGTaGCGCCCACACTCAATTGTGACCAGCTTGTGGCAC | + |
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Preference number: 6 (lower is better) Translates to: WSIGIMGSGGKE*RPHSIVTSLWH Trigger: GTGCCACAAGCTGGTCACAATTGAGTGTGGGCGGCACTCTTTGCCACCGGAACCCATGATGCCAATGGACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108249.9 ENSMUST00000130238.2 |
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| CDS CCA 72 bp | GGAATTACTGTCTGTGTGTGGTCTGGATGCATGGTCTaGTCCATTGGCATCATGGGTTCCGGTGGCAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: GITVCVWSGCMV*SIGIMGSGGKE Trigger: CTCTTTGCCACCGGAACCCATGATGCCAATGGACCAGACCATGCATCCAGACCACACACAGACAGTAATTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108249.9 ENSMUST00000130238.2 |
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| CDS CCA 72 bp | TATATGGAATTACTGTCTGTGTGTGGTCTGGATGCATaGTCTGGTCCATTGGCATCATGGGTTCCGGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: YMELLSVCGLDA*SGPLASWVPVA Trigger: TGCCACCGGAACCCATGATGCCAATGGACCAGACCATGCATCCAGACCACACACAGACAGTAATTCCATATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108249.9 ENSMUST00000130238.2 |
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| CDS GCA 72 bp | GGATTATATGGAATTACTGTCTGTGTGTGGTCTGGATaGATGGTCTGGTCCATTGGCATCATGGGTTCCGGT | + |
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Preference number: 6 (lower is better) Translates to: GLYGITVCVWSG*MVWSIGIMGSG Trigger: ACCGGAACCCATGATGCCAATGGACCAGACCATGCATCCAGACCACACACAGACAGTAATTCCATATAATCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108249.9 |
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| CDS CCA 72 bp | CTTGTCTTCCCCTGGGCAAGGCATTCCAGGACGCTCTaGTACACATGGAAATACATGAATCAAGAGTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: LVFPWARHSRTL*YTWKYMNQEFR Trigger: TCTGAACTCTTGATTCATGTATTTCCATGTGTACCAGAGCGTCCTGGAATGCCTTGCCCAGGGGAAGACAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108249.9 ENSMUST00000130238.2 |
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