Pregenerated sensors for PRKCG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078816Ensembl transcript IDs: ENSMUST00000100301.11, ENSMUST00000172109.4, ENSMUST00000203081.2
Found 125 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTAGGAGCCCGGATTTCCAGTTGCAGACGTCCACGGCGCTCTGTGTaGTCCACACCGCAAAGGGAGGGCACGCTGCGCACACAGCGCCGG | + |
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Preference number: 1 (lower is better) Translates to: VGARISSCRRPRRSV*STPQREGTLRTQRR Trigger: CCGGCGCTGTGTGCGCAGCGTGCCCTCCCTTTGCGGTGTGGACCACACAGAGCGCCGTGGACGTCTGCAACTGGAAATCCGGGCTCCTAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR CCA 90 bp | ATCCCAATCCCACACCTCCACACTGAGCCGGCGCTCTACATCCCCTaGCTTCAGGTTGAACACGAAGGTCTCGTTCCACACGGGATTCAG | + |
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Preference number: 1 (lower is better) Translates to: IPIPHLHTEPALYIP*LQVEHEGLVPHGIQ Trigger: CTGAATCCCGTGTGGAACGAGACCTTCGTGTTCAACCTGAAGCCAGGGGATGTAGAGCGCCGGCTCAGTGTGGAGGTGTGGGATTGGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR GCA 90 bp | ACAGTAATATGGATCTCATCCGACGTAGGAGCCCGGATTTCCAGTTaGAGACGTCCACGGCGCTCTGTGTGGTCCACACCGCAAAGGGAG | + |
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Preference number: 1 (lower is better) Translates to: TVIWISSDVGARISS*RRPRRSVWSTPQRE Trigger: CTCCCTTTGCGGTGTGGACCACACAGAGCGCCGTGGACGTCTGCAACTGGAAATCCGGGCTCCTACGTCGGATGAGATCCATATTACTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR CCA 90 bp | CTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTGGTCTaGAACGCTGAGCCCAGACTCCCACTTAACTCTACAACTGAAGTG | + |
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Preference number: 1 (lower is better) Translates to: LGACQESPERGREVV*NAEPRLPLNSTTEV Trigger: CACTTCAGTTGTAGAGTTAAGTGGGAGTCTGGGCTCAGCGTTCCAGACCACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR GCA 90 bp | AGGAAGGGGGTGGGGAATGAGAAAGTCCCAGAAAGTTGCAGGCACTaGGGAGGACAAGGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: RKGVGNEKVPESCRH*GGQGLCVCVCVCVC Trigger: ACACACACACACACACACACACACACACAGCCCTTGTCCTCCGCAGTGCCTGCAACTTTCTGGGACTTTCTCATTCCCCACCCCCTTCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR CCA 90 bp | GAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTaGTCTGGAACGCTGAGCCCAGACTCCCACTTAACTCTACAACTG | + |
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Preference number: 1 (lower is better) Translates to: EFLVHARNPQSVEGR*SGTLSPDSHLTLQL Trigger: CAGTTGTAGAGTTAAGTGGGAGTCTGGGCTCAGCGTTCCAGACCACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR GCA 90 bp | AAACTGCCTTTCCCTAGAACCATGAGGAAGCTGAAGTCAGAGATATaGAGGCGTCCTGGGCTGGCACCAAAGAAGCATCGCTTGGAGTCC | + |
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Preference number: 1 (lower is better) Translates to: KLPFPRTMRKLKSEI*RRPGLAPKKHRLES Trigger: GGACTCCAAGCGATGCTTCTTTGGTGCCAGCCCAGGACGCCTGCATATCTCTGACTTCAGCTTCCTCATGGTTCTAGGGAAAGGCAGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR GCA 90 bp | ACAATTCCAAGGGGTAATTGCAGGCCTCAAACTTCTGGAGGAGGCTaGAGTTGTCAGCATCGGCCACCGGTACATTGTAATATTCGCCCT | + |
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Preference number: 1 (lower is better) Translates to: TIPRGNCRPQTSGGG*SCQHRPPVHCNIRP Trigger: AGGGCGAATATTACAATGTACCGGTGGCCGATGCTGACAACTGCAGCCTCCTCCAGAAGTTTGAGGCCTGCAATTACCCCTTGGAATTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR GCA 90 bp | GAATCTAGAACACAGAAAGGCTCTAGAGACTCTTTGAGTTTAAAATaGCAGCAATGCTGGGAAACAGCGTCTAGAACTCGTTGGGGTGCG | + |
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Preference number: 1 (lower is better) Translates to: ESRTQKGSRDSLSLK*QQCWETASRTRWGA Trigger: CGCACCCCAACGAGTTCTAGACGCTGTTTCCCAGCATTGCTGGCATTTTAAACTCAAAGAGTCTCTAGAGCCTTTCTGTGTTCTAGATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR-3UTR TCA 90 bp | GGGGTAATTGCAGGCCTCAAACTTCTGGAGGAGGCTGCAGTTGTCAGCATCGGCCCCACACCTCCACACTaGGCCGGCGCTCTACATCCC | + |
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Preference number: 2 (lower is better) Translates to: GVIAGLKLLEEAAVVSIGPTPPH*AGALHP Trigger: GGGATGTAGAGCGCCGGCTCAGTGTGGAGGTGTGGG...GCCGATGCTGACAACTGCAGCCTCCTCCAGAAGTTTGAGGCCTGCAATTACCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR-3UTR GCA 90 bp | CCGGGCCTCGCCAACAGTAATATGGATCTCATCCGACGTAGGAGCCCGGATTTCAAAGGGAGGGCACGCTaGGCACACAGCGCCGGTGCA | + |
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Preference number: 2 (lower is better) Translates to: PGLANSNMDLIRRRSPDFKGRAR*AHSAGA Trigger: TGCACCGGCGCTGTGTGCGCAGCGTGCCCTCCCTTT...GAAATCCGGGCTCCTACGTCGGATGAGATCCATATTACTGTTGGCGAGGCCCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR-3UTR CCA 90 bp | GCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTGGTCTGGAACGCTGAGCCCCTATTTTCCCCAGAATaGTCTAGGGAGAGAGAAGGC | + |
|
Preference number: 2 (lower is better) Translates to: ACQESPERGREVVWNAEPLFSPE*SREREG Trigger: GCCTTCTCTCTCCCTAGACCATTCTGGGGAAAATAG...GGGCTCAGCGTTCCAGACCACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR CAA 90 bp | AACAGTAATATGGATCTCATCCGACGTAGGAGCCCGGATTTCCAGTaGCAGACGTCCACGGCGCTCTGTGTGGTCCACACCGCAAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: NSNMDLIRRRSPDFQ*QTSTALCVVHTAKG Trigger: TCCCTTTGCGGTGTGGACCACACAGAGCGCCGTGGACGTCTGCAACTGGAAATCCGGGCTCCTACGTCGGATGAGATCCATATTACTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR-3UTR CCA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTTCCAGATGTTGGGGGTaGGGAAAATCAGGGCTCAGC | + |
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Preference number: 2 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSSRCWG*GKSGLS Trigger: GCTGAGCCCTGATTTTCCCCACCCCCAACATCTGGA...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR-3UTR CCA 90 bp | AGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGGTTTCTGGGAAGAGTTaGAACAGTATCCAGATGTTG | + |
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Preference number: 2 (lower is better) Translates to: RGKEFLVHARNPQSVEGRVSGKS*NSIQML Trigger: CAACATCTGGATACTGTTCCAACTCTTCCCAGAAAC...CCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR CCA 72 bp | CGGACTAGAGAGGGTAGATGGGTGTTACAGCCGGCTTaGCGGAGGGAGCACTGGGGACACCTAGCGGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: RTREGRWVLQPA*RREHWGHLAAA Trigger: TGCTGCCGCTAGGTGTCCCCAGTGCTCCCTCCGCCAAGCCGGCTGTAACACCCATCTACCCTCTCTAGTCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR CCA 72 bp | CGGATTTCCAGTTGCAGACGTCCACGGCGCTCTGTGTaGTCCACACCGCAAAGGGAGGGCACGCTGCGCACA | + |
|
Preference number: 3 (lower is better) Translates to: RISSCRRPRRSV*STPQREGTLRT Trigger: TGTGCGCAGCGTGCCCTCCCTTTGCGGTGTGGACCACACAGAGCGCCGTGGACGTCTGCAACTGGAAATCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR GCA 72 bp | TGGATCTCATCCGACGTAGGAGCCCGGATTTCCAGTTaGAGACGTCCACGGCGCTCTGTGTGGTCCACACCG | + |
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Preference number: 3 (lower is better) Translates to: WISSDVGARISS*RRPRRSVWSTP Trigger: CGGTGTGGACCACACAGAGCGCCGTGGACGTCTGCAACTGGAAATCCGGGCTCCTACGTCGGATGAGATCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR CCA 72 bp | CCACACCTCCACACTGAGCCGGCGCTCTACATCCCCTaGCTTCAGGTTGAACACGAAGGTCTCGTTCCACAC | + |
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Preference number: 3 (lower is better) Translates to: PHLHTEPALYIP*LQVEHEGLVPH Trigger: GTGTGGAACGAGACCTTCGTGTTCAACCTGAAGCCAGGGGATGTAGAGCGCCGGCTCAGTGTGGAGGTGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR CCA 72 bp | TGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTGGTCTaGAACGCTGAGCCCAGACTCCCACTTAACTCTACA | + |
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Preference number: 3 (lower is better) Translates to: CQESPERGREVV*NAEPRLPLNST Trigger: TGTAGAGTTAAGTGGGAGTCTGGGCTCAGCGTTCCAGACCACCTCCCTTCCACGCTCTGGGGATTCCTGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR GCA 72 bp | GTGGGGAATGAGAAAGTCCCAGAAAGTTGCAGGCACTaGGGAGGACAAGGGCTGTGTGTGTGTGTGTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: VGNEKVPESCRH*GGQGLCVCVCV Trigger: CACACACACACACACACACAGCCCTTGTCCTCCGCAGTGCCTGCAACTTTCTGGGACTTTCTCATTCCCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR CCA 72 bp | CATGAGGAAGCTGAAGTCAGAGATATGCAGGCGTCCTaGGCTGGCACCAAAGAAGCATCGCTTGGAGTCCGT | + |
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Preference number: 3 (lower is better) Translates to: HEEAEVRDMQAS*AGTKEASLGVR Trigger: ACGGACTCCAAGCGATGCTTCTTTGGTGCCAGCCCAGGACGCCTGCATATCTCTGACTTCAGCTTCCTCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR TCA 72 bp | GATTCCGACCAAGGCTGGAGCCATGCACGGGGCAGGTaGGCATTGAGGGATTCTGGAACAAGTCTAGAACAA | + |
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Preference number: 3 (lower is better) Translates to: DSDQGWSHARGR*ALRDSGTSLEQ Trigger: TTGTTCTAGACTTGTTCCAGAATCCCTCAATGCTCACCTGCCCCGTGCATGGCTCCAGCCTTGGTCGGAATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR TCA 72 bp | GGTTCAGTAACTTGTACCATCCATCCACAGGGGCCTTaGGTAGCTCTGAGACACCAAAGGACATGGCACCCA | + |
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Preference number: 3 (lower is better) Translates to: GSVTCTIHPQGP*VALRHQRTWHP Trigger: TGGGTGCCATGTCCTTTGGTGTCTCAGAGCTACTCAAGGCCCCTGTGGATGGATGGTACAAGTTACTGAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR GCA 72 bp | AGGGGTAATTGCAGGCCTCAAACTTCTGGAGGAGGCTaGAGTTGTCAGCATCGGCCACCGGTACATTGTAAT | + |
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Preference number: 3 (lower is better) Translates to: RGNCRPQTSGGG*SCQHRPPVHCN Trigger: ATTACAATGTACCGGTGGCCGATGCTGACAACTGCAGCCTCCTCCAGAAGTTTGAGGCCTGCAATTACCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| 3UTR-3UTR CAA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTGGTTTCTGGGAAGAGTaGGAACAGTATCCAGATGTT | + |
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Preference number: 3 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSGFWEE*EQYPDV Trigger: AACATCTGGATACTGTTCCAACTCTTCCCAGAAACC...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR CCA 72 bp | CTGGGAAGAGTTGGAACAGTATCCAGATGTTGGGGGTaGGGAAAATCAGGGCTCAGCACAACGGAATCTAGA | + |
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Preference number: 3 (lower is better) Translates to: LGRVGTVSRCWG*GKSGLSTTESR Trigger: TCTAGATTCCGTTGTGCTGAGCCCTGATTTTCCCCACCCCCAACATCTGGATACTGTTCCAACTCTTCCCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR GCA 72 bp | GGCTCTAGAGACTCTTTGAGTTTAAAATGCCAGCAATaGTGGGAAACAGCGTCTAGAACTCGTTGGGGTGCG | + |
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Preference number: 3 (lower is better) Translates to: GSRDSLSLKCQQ*WETASRTRWGA Trigger: CGCACCCCAACGAGTTCTAGACGCTGTTTCCCAGCATTGCTGGCATTTTAAACTCAAAGAGTCTCTAGAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR TCA 72 bp | CAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTCATaGGACTATTTTCCCCAGAATGGTCTAGGGAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: QIWSLSLEQAIS*DYFPQNGLGRE Trigger: CTCTCTCCCTAGACCATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCCAGACTAAGACTCCAGATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR CCA 72 bp | GGAGCAGGCAATCTCATGAGACTATTTTCCCCAGAATaGTCTAGGGAGAGAGAAGGCATAAACTACCAAGTG | + |
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Preference number: 3 (lower is better) Translates to: GAGNLMRLFSPE*SREREGINYQV Trigger: CACTTGGTAGTTTATGCCTTCTCTCTCCCTAGACCATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR-3UTR CAA 90 bp | TCTGGAGTCTTAGTCTGGAGCAGGCAATCTCATGAGACTATTTTCCCCAGAATGGGCTCTAGAGACTCTTaGAGTTTAAAATGCCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: SGVLVWSRQSHETIFPRMGSRDS*SLKCQQ Trigger: TTGCTGGCATTTTAAACTCAAAGAGTCTCTAGAGCC...CATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCCAGACTAAGACTCCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CCA 90 bp | GCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTGGTCTGGAACGCTGAGCCCGCCCAGGCGTTTTCCTaGGTGCTTGGTCAGGAACCC | + |
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Preference number: 4 (lower is better) Translates to: ACQESPERGREVVWNAEPAQAFS*VLGQEP Trigger: GGGTTCCTGACCAAGCACCCAGGAAAACGCCTGGGC...GGGCTCAGCGTTCCAGACCACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CCA 90 bp | GGTAGATGGGTGTTACAGCCGGCTTGGCGGAGGGAGCACTGGGGACACCTAGCGGATATGCAGGCGTCCTaGGCTGGCACCAAAGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: GRWVLQPAWRREHWGHLADMQAS*AGTKEA Trigger: TGCTTCTTTGGTGCCAGCCCAGGACGCCTGCATATC...CGCTAGGTGTCCCCAGTGCTCCCTCCGCCAAGCCGGCTGTAACACCCATCTACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR CAA 72 bp | TGCAGGCGTCCTGGGCTGGCACCAAAGAAGCATCGCTaGGAGTCCGTAGGACTGGGGGATGGAGAAGGGATG | + |
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Preference number: 4 (lower is better) Translates to: CRRPGLAPKKHR*ESVGLGDGEGM Trigger: CATCCCTTCTCCATCCCCCAGTCCTACGGACTCCAAGCGATGCTTCTTTGGTGCCAGCCCAGGACGCCTGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| CDS-3UTR TCA 90 bp | GGTAGATGGGTGTTACAGCCGGCTTGGCGGAGGGAGCACTGGGGACACCTAGCGAGCTTCCCGGGAAAGTaGCTTGGGATAGGTGACAGT | + |
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Preference number: 4 (lower is better) Translates to: GRWVLQPAWRREHWGHLASFPGK*LGIGDS Trigger: ACTGTCACCTATCCCAAGTCACTTTCCCGGGAAGCT...CGCTAGGTGTCCCCAGTGCTCCCTCCGCCAAGCCGGCTGTAACACCCATCTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR GCA 90 bp | GAGCCCAGACTCCCACTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGGTCTGGCGGGGTCAGTaGTGGCGCTGCCCGCGTGAA | + |
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Preference number: 4 (lower is better) Translates to: EPRLPLNSTTEVEVGGALVWRGQ*WRCPRE Trigger: TTCACGCGGGCAGCGCCAGCACTGACCCCGCCAGAC...CAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAGTGGGAGTCTGGGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR GCA 90 bp | AGTAGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGCAGGGCTTGTGGGGCTaGGGGCATCTGGGTGCACGA | + |
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Preference number: 4 (lower is better) Translates to: SRGKEFLVHARNPQSVEGQGLWG*GHLGAR Trigger: TCGTGCACCCAGATGCCCGCAGCCCCACAAGCCCTG...CCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCTACT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| 3UTR CAA 72 bp | ATGGATCTCATCCGACGTAGGAGCCCGGATTTCCAGTaGCAGACGTCCACGGCGCTCTGTGTGGTCCACACC | + |
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Preference number: 4 (lower is better) Translates to: MDLIRRRSPDFQ*QTSTALCVVHT Trigger: GGTGTGGACCACACAGAGCGCCGTGGACGTCTGCAACTGGAAATCCGGGCTCCTACGTCGGATGAGATCCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| CDS-3UTR GCA 90 bp | GGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTGGTCAGTGCTGGCGCTaGCCGCGTGAAGAACTTGTC | + |
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Preference number: 4 (lower is better) Translates to: GGKNSWCMPGIPRAWKGGGQCWR*PREELV Trigger: GACAAGTTCTTCACGCGGGCAGCGCCAGCACTGACC...ACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR GCA 90 bp | GGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTCTGCGGGCATCTGGGTaGACGAAGTCCGGGTTCACA | + |
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Preference number: 4 (lower is better) Translates to: GGKNSWCMPGIPRAWKGGLRASG*TKSGFT Trigger: TGTGAACCCGGACTTCGTGCACCCAGATGCCCGCAG...ACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR TCA 90 bp | CTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGAAGGATGCGGGGAGCTTCCCCATCTGGCCCTaGGCCCAGGCGTTTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LNSTTEVEVGGALKDAGSFPIWP*AQAFSW Trigger: CCAGGAAAACGCCTGGGCTCAGGGCCAGATGGGGAA...GCTCCCCGCATCCTTCAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR GCA 90 bp | AGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGCGCACACAGCGCCGGTaGACATTCATCTCGCAACAG | + |
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Preference number: 4 (lower is better) Translates to: RGKEFLVHARNPQSVEGRRTQRR*TFISQQ Trigger: CTGTTGCGAGATGAATGTGCACCGGCGCTGTGTGCG...CCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR GCA 90 bp | GAGCCCAGACTCCCACTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGGGGTGCCACAGAAGGTaGGGGTTGTGGACCCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: EPRLPLNSTTEVEVGGALGCHRR*GLWTQG Trigger: TCCCTGGGTCCACAACCCGCACCTTCTGTGGCACCC...CAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAGTGGGAGTCTGGGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR GCA 90 bp | GGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTACTTCTGGAGGAGGCTaGAGTTGTCAGCATCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: GGKNSWCMPGIPRAWKGGTSGGG*SCQHRP Trigger: TGGCCGATGCTGACAACTGCAGCCTCCTCCAGAAGT...ACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR GCA 90 bp | GGTAGATGGGTGTTACAGCCGGCTTGGCGGAGGGAGCACTGGGGACACCTAGCGATTCCAAGGGGTAATTaGAGGCCTCAAACTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: GRWVLQPAWRREHWGHLAIPRGN*RPQTSG Trigger: TCCAGAAGTTTGAGGCCTGCAATTACCCCTTGGAAT...CGCTAGGTGTCCCCAGTGCTCCCTCCGCCAAGCCGGCTGTAACACCCATCTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR GCA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTGTTCGTCGGAGCCTCTaGGCTCTGCCAGCATTACCT | + |
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Preference number: 4 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSVRRSL*ALPALP Trigger: AGGTAATGCTGGCAGAGCGCAGAGGCTCCGACGAAC...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CCA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTCGAGCGGTGAACTTGTaGCTCTTCACCTCGTGGACC | + |
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Preference number: 4 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSRAVNL*LFTSWT Trigger: GGTCCACGAGGTGAAGAGCCACAAGTTCACCGCTCG...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CCA 90 bp | CCGGGCCTCGCCAACAGTAATATGGATCTCATCCGACGTAGGAGCCCGGATTTCGCCCTTTCCAGCGCCTaGACACTCGAAGGTCACAAA | + |
|
Preference number: 4 (lower is better) Translates to: PGLANSNMDLIRRRSPDFALSSA*TLEGHK Trigger: TTTGTGACCTTCGAGTGTCCAGGCGCTGGAAAGGGC...GAAATCCGGGCTCCTACGTCGGATGAGATCCATATTACTGTTGGCGAGGCCCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
||
| CDS-3UTR CCA 90 bp | GGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTGGAACCCTTTGCAGATaGCCACAGCTTCCCGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: GGKNSWCMPGIPRAWKGGGTLCR*PQLPGK Trigger: TTTCCCGGGAAGCTGTGGCCATCTGCAAAGGGTTCC...ACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR TCA 90 bp | CTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGAAGGATGCGGGGAGCCAACGGAAAAAGCCATaGGCCCGGATGGTGGGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LNSTTEVEVGGALKDAGSQRKKP*ARMVGS Trigger: GGAACCCACCATCCGGGCTCATGGCTTTTTCCGTTG...GCTCCCCGCATCCTTCAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR TCA 90 bp | GGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTCTGGCGCTGCCCGCGTaGAGAACTTGTCAAAGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: GGKNSWCMPGIPRAWKGGLALPA*RTCQSF Trigger: AAAACTTTGACAAGTTCTTCACGCGGGCAGCGCCAG...ACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR GCA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTCTGAAGTCAGAGATATaGAGGCGTCCTGGGCTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSLKSEI*RRPGLA Trigger: TGCCAGCCCAGGACGCCTGCATATCTCTGACTTCAG...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR GCA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTGGAGCCTCTGCGCTCTaGCAGCATTACCTTCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSGASAL*QHYLPK Trigger: TTTGGGAAGGTAATGCTGGCAGAGCGCAGAGGCTCC...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | AGTAGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGTGGTCGCAGAAGGTaGGACTGCTGTAGCTGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: SRGKEFLVHARNPQSVEGSGRRR*DCCSCA Trigger: TGCACAGCTACAGCAGTCCCACCTTCTGCGACCACT...CCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCTACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | GGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTGCGCTCTACATCCCCTaGCTTCAGGTTGAACACGAA | + |
|
Preference number: 4 (lower is better) Translates to: GGKNSWCMPGIPRAWKGGALYIP*LQVEHE Trigger: TTCGTGTTCAACCTGAAGCCAGGGGATGTAGAGCGC...ACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTCAGCTTGGTCGATGCTaGCTAGAACCAAGCGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSQLGRC*LEPSGL Trigger: CAGACCGCTTGGTTCTAGCCAGCATCGACCAAGCTG...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR TCA 90 bp | GAGCCCAGACTCCCACTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGTCGTGGCATCGGCGGTaGACCACAAAGCTACAGACT | + |
|
Preference number: 4 (lower is better) Translates to: EPRLPLNSTTEVEVGGALSWHRR*TTKLQT Trigger: AGTCTGTAGCTTTGTGGTTCACCGCCGATGCCACGA...CAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAGTGGGAGTCTGGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR TCA 90 bp | TCTGGAGTCTTAGTCTGGAGCAGGCAATCTCATGAGACTATTTTCCCCAGAATGCCCACACCTCCACACTaGGCCGGCGCTCTACATCCC | + |
|
Preference number: 4 (lower is better) Translates to: SGVLVWSRQSHETIFPRMPTPPH*AGALHP Trigger: GGGATGTAGAGCGCCGGCTCAGTGTGGAGGTGTGGG...CATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCCAGACTAAGACTCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR GCA 90 bp | GAGCCCAGACTCCCACTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGCTATGTAGTCTGGGGTaGCACAGAAGGTGCGGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: EPRLPLNSTTEVEVGGALLCSLG*HRRCGL Trigger: CAACCCGCACCTTCTGTGGCACCCCAGACTACATAG...CAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAGTGGGAGTCTGGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR GCA 90 bp | AGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGAAAGGGTGGCTGTCCTaGCAACATCTCATACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: RGKEFLVHARNPQSVEGRKGWLS*QHLIQQ Trigger: CTGCTGTATGAGATGTTGGCAGGACAGCCACCCTTT...CCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR GCA 90 bp | GAGCCCAGACTCCCACTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGTGGTCAGGAACCCTTTaGAGATGGCCACAGCTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: EPRLPLNSTTEVEVGGALWSGTL*RWPQLP Trigger: GGGAAGCTGTGGCCATCTGCAAAGGGTTCCTGACCA...CAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAGTGGGAGTCTGGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR GCA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTAGGCGTTTTCCTGGGTaGTTGGTCAGGAACCCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSRRFPG*LVRNPL Trigger: CAAAGGGTTCCTGACCAAGCACCCAGGAAAACGCCT...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTCAGGCCTCAAACTTCTaGAGGAGGCTGCAGTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSQASNF*RRLQLS Trigger: TGACAACTGCAGCCTCCTCCAGAAGTTTGAGGCCTG...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTAGAAGGTGCGGGTTGTaGACCCAGGGAAGACATTCT | + |
|
Preference number: 4 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSRRCGL*TQGRHS Trigger: AGAATGTCTTCCCTGGGTCCACAACCCGCACCTTCT...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | AGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGGTTTTCCTGGGTGCTTaGTCAGGAACCCTTTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: RGKEFLVHARNPQSVEGRVFLGA*SGTLCR Trigger: TCTGCAAAGGGTTCCTGACCAAGCACCCAGGAAAAC...CCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CCA 90 bp | AGTAGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGCCCTGGAAATCAGCTTaGTCGATGCTGGCTAGAACC | + |
|
Preference number: 4 (lower is better) Translates to: SRGKEFLVHARNPQSVEGPWKSA*SMLART Trigger: GGTTCTAGCCAGCATCGACCAAGCTGATTTCCAGGG...CCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCTACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | CATAAACTACCAAGTGGGGTTTCTGGGAAGAGTTGGAACAGTATCCAGATGTTGTGGCGGGGTCAGTGCTaGCGCTGCCCGCGTGAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: HKLPSGVSGKSWNSIQMLWRGQC*RCPREE Trigger: TTCTTCACGCGGGCAGCGCCAGCACTGACCCCGCCA...CAACATCTGGATACTGTTCCAACTCTTCCCAGAAACCCCACTTGGTAGTTTATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | CATAAACTACCAAGTGGGGTTTCTGGGAAGAGTTGGAACAGTATCCAGATGTTGGGGGCTGCGGGCATCTaGGTGCACGAAGTCCGGGTT | + |
|
Preference number: 4 (lower is better) Translates to: HKLPSGVSGKSWNSIQMLGAAGI*VHEVRV Trigger: AACCCGGACTTCGTGCACCCAGATGCCCGCAGCCCC...CAACATCTGGATACTGTTCCAACTCTTCCCAGAAACCCCACTTGGTAGTTTATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR TCA 90 bp | TCTGGAGTCTTAGTCTGGAGCAGGCAATCTCATGAGACTATTTTCCCCAGAATGTGGAGTGAAGCTGCGTaGGAAAGTGTGGCCGGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SGVLVWSRQSHETIFPRMWSEAA*ESVAGL Trigger: GAGGCCGGCCACACTTTCTCACGCAGCTTCACTCCA...CATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCCAGACTAAGACTCCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | ACGGAATCTAGAACACAGAAAGGCTCTAGAGACTCTTTGAGTTTAAAATGCCAGCGGGCACAGGGCTTGTaGGGCTGCGGGCATCTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: TESRTQKGSRDSLSLKCQRAQGL*GCGHLG Trigger: ACCCAGATGCCCGCAGCCCCACAAGCCCTGTGCCCG...CTGGCATTTTAAACTCAAAGAGTCTCTAGAGCCTTTCTGTGTTCTAGATTCCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR GCA 90 bp | CATAAACTACCAAGTGGGGTTTCTGGGAAGAGTTGGAACAGTATCCAGATGTTGTCGTGGACCACCTTCTaGCTCAGCGCCCCCTTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: HKLPSGVSGKSWNSIQMLSWTTF*LSAPFL Trigger: CAGAAAGGGGGCGCTGAGGCAGAAGGTGGTCCACGA...CAACATCTGGATACTGTTCCAACTCTTCCCAGAAACCCCACTTGGTAGTTTATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR GCA 90 bp | ACGGAATCTAGAACACAGAAAGGCTCTAGAGACTCTTTGAGTTTAAAATGCCAGAAAGGGAGGGCACGCTaGGCACACAGCGCCGGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: TESRTQKGSRDSLSLKCQKGRAR*AHSAGA Trigger: TGCACCGGCGCTGTGTGCGCAGCGTGCCCTCCCTTT...CTGGCATTTTAAACTCAAAGAGTCTCTAGAGCCTTTCTGTGTTCTAGATTCCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CCA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTTATTCGCCCTCCTCCTaGTTCAGTAACTTGTACCAT | + |
|
Preference number: 4 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSYSPSS*FSNLYH Trigger: ATGGTACAAGTTACTGAACCAGGAGGAGGGCGAATA...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | AGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGAACTTGCCCAGTTGCTaGATGTGGTACATTAAATCG | + |
|
Preference number: 4 (lower is better) Translates to: RGKEFLVHARNPQSVEGRNLPSC*MWYIKS Trigger: CGATTTAATGTACCACATCCAGCAACTGGGCAAGTT...CCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR TCA 90 bp | CTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGAAGGATGCGGGGAGCCTTTCTTCAGTATCTTaGTGGCATAGAGTTCGTCGG | + |
|
Preference number: 4 (lower is better) Translates to: LNSTTEVEVGGALKDAGSLSSVS*WHRVRR Trigger: CCGACGAACTCTATGCCATCAAGATACTGAAGAAAG...GCTCCCCGCATCCTTCAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | TCTGGAGTCTTAGTCTGGAGCAGGCAATCTCATGAGACTATTTTCCCCAGAATGGCCCTTTCCAGCGCCTaGACACTCGAAGGTCACAAA | + |
|
Preference number: 4 (lower is better) Translates to: SGVLVWSRQSHETIFPRMALSSA*TLEGHK Trigger: TTTGTGACCTTCGAGTGTCCAGGCGCTGGAAAGGGC...CATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCCAGACTAAGACTCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | ACGGAATCTAGAACACAGAAAGGCTCTAGAGACTCTTTGAGTTTAAAATGCCAGCCACGGCGCTCTGTGTaGTCCACACCGCAAAGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: TESRTQKGSRDSLSLKCQPRRSV*STPQRE Trigger: CTCCCTTTGCGGTGTGGACCACACAGAGCGCCGTGG...CTGGCATTTTAAACTCAAAGAGTCTCTAGAGCCTTTCTGTGTTCTAGATTCCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| 3UTR CAA 72 bp | GATTCAGTGTGGCTTTCACGGTCTTTGTCTTCTGTTTaGTCAGGTTCCGAGGGTCCGGGATCAGCTTCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: DSVWLSRSLSSV*SGSEGPGSASV Trigger: AACTGAAGCTGATCCCGGACCCTCGGAACCTGACAAAACAGAAGACAAAGACCGTGAAAGCCACACTGAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
||
| CDS-3UTR CCA 90 bp | ACGGAATCTAGAACACAGAAAGGCTCTAGAGACTCTTTGAGTTTAAAATGCCAGGCAGGCGTCCTGGGCTaGCACCAAAGAAGCATCGCT | + |
|
Preference number: 4 (lower is better) Translates to: TESRTQKGSRDSLSLKCQAGVLG*HQRSIA Trigger: AGCGATGCTTCTTTGGTGCCAGCCCAGGACGCCTGC...CTGGCATTTTAAACTCAAAGAGTCTCTAGAGCCTTTCTGTGTTCTAGATTCCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | TCTGGAGTCTTAGTCTGGAGCAGGCAATCTCATGAGACTATTTTCCCCAGAATGTTCCCCATCAAAGGGTaGCTGTCCTGCCAACATCTC | + |
|
Preference number: 4 (lower is better) Translates to: SGVLVWSRQSHETIFPRMFPIKG*LSCQHL Trigger: GAGATGTTGGCAGGACAGCCACCCTTTGATGGGGAA...CATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCCAGACTAAGACTCCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR TCA 90 bp | TCTGGAGTCTTAGTCTGGAGCAGGCAATCTCATGAGACTATTTTCCCCAGAATGATGATGCCCTGGTTGTaGAGGAAGAAGAGGCCTATG | + |
|
Preference number: 4 (lower is better) Translates to: SGVLVWSRQSHETIFPRMMMPWL*RKKRPM Trigger: CATAGGCCTCTTCTTCCTTCACAACCAGGGCATCAT...CATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCCAGACTAAGACTCCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR TCA 90 bp | TCTGGAGTCTTAGTCTGGAGCAGGCAATCTCATGAGACTATTTTCCCCAGAATGACAAAGCTACAGACTTaGCATTGCAGGCCCTGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SGVLVWSRQSHETIFPRMTKLQT*HCRPCF Trigger: AAAGCAGGGCCTGCAATGTCAAGTCTGTAGCTTTGT...CATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCCAGACTAAGACTCCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CCA 90 bp | ACGGAATCTAGAACACAGAAAGGCTCTAGAGACTCTTTGAGTTTAAAATGCCAGGGAAGAAGAGGCCTATaGCGATTTCCGCAGCGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: TESRTQKGSRDSLSLKCQGRRGL*RFPQRR Trigger: TCTACGCTGCGGAAATCGCCATAGGCCTCTTCTTCC...CTGGCATTTTAAACTCAAAGAGTCTCTAGAGCCTTTCTGTGTTCTAGATTCCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| 3UTR CAA 72 bp | ACGGAATCTAGAACACAGAAAGGCTCTAGAGACTCTTaGAGTTTAAAATGCCAGCAATGCTGGGAAACAGCG | + |
|
Preference number: 4 (lower is better) Translates to: TESRTQKGSRDS*SLKCQQCWETA Trigger: CGCTGTTTCCCAGCATTGCTGGCATTTTAAACTCAAAGAGTCTCTAGAGCCTTTCTGTGTTCTAGATTCCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR TCA 90 bp | CATAAACTACCAAGTGGGGTTTCTGGGAAGAGTTGGAACAGTATCCAGATGTTGTGTTCCATGATGGCTTaGAACAACTCTTCCTCATCT | + |
|
Preference number: 4 (lower is better) Translates to: HKLPSGVSGKSWNSIQMLCSMMA*NNSSSS Trigger: AGATGAGGAAGAGTTGTTTCAAGCCATCATGGAACA...CAACATCTGGATACTGTTCCAACTCTTCCCAGAAACCCCACTTGGTAGTTTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR GCA 90 bp | ACGGAATCTAGAACACAGAAAGGCTCTAGAGACTCTTTGAGTTTAAAATGCCAGTGGTCTGAAAGGAGGTaGAATTTCCAGTCTCTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: TESRTQKGSRDSLSLKCQWSERR*NFQSLQ Trigger: TTGGAGAGACTGGAAATTGCACCTCCTTTCAGACCA...CTGGCATTTTAAACTCAAAGAGTCTCTAGAGCCTTTCTGTGTTCTAGATTCCGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR GCA 90 bp | CATAAACTACCAAGTGGGGTTTCTGGGAAGAGTTGGAACAGTATCCAGATGTTGTTAAACTTGCCCAGTTaGTGGATGTGGTACATTAAA | + |
|
Preference number: 4 (lower is better) Translates to: HKLPSGVSGKSWNSIQMLLNLPS*WMWYIK Trigger: TTTAATGTACCACATCCAGCAACTGGGCAAGTTTAA...CAACATCTGGATACTGTTCCAACTCTTCCCAGAAACCCCACTTGGTAGTTTATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS CCA 90 bp | GCGGTCCGGAGTCTGAAAGGTGGAGTGAAGCTGCGTGAGAAAGTGTaGCCGGCCTCCAGGACCTCGGCCTCCCAATGCCAGGACACGCTT | + |
|
Preference number: 5 (lower is better) Translates to: AVRSLKGGVKLREKV*PASRTSASQCQDTL Trigger: AAGCGTGTCCTGGCATTGGGAGGCCGAGGTCCTGGAGGCCGGCCACACTTTCTCACGCAGCTTCACTCCACCTTTCAGACTCCGGACCGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
||
| CDS TCA 90 bp | CTAGAACCAAGCGGTCTGGCGGGGTCAGTGCTGGCGCTGCCCGCGTaGAGAACTTGTCAAAGTTTTCGCCACTGCGGCCACACGGACGTG | + |
|
Preference number: 5 (lower is better) Translates to: LEPSGLAGSVLALPA*RTCQSFRHCGHTDV Trigger: CACGTCCGTGTGGCCGCAGTGGCGAAAACTTTGACAAGTTCTTCACGCGGGCAGCGCCAGCACTGACCCCGCCAGACCGCTTGGTTCTAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
||
| CDS CCA 90 bp | GTGCTTGTTGCGAGGGTCGTCCGTCTGGGGGCCCTTTCCAGCGCCTaGACACTCGAAGGTCACAAATTCGTGGCATCGGCGGTGAACCAC | + |
|
Preference number: 5 (lower is better) Translates to: VLVARVVRLGALSSA*TLEGHKFVASAVNH Trigger: GTGGTTCACCGCCGATGCCACGAATTTGTGACCTTCGAGTGTCCAGGCGCTGGAAAGGGCCCCCAGACGGACGACCCTCGCAACAAGCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
||
| CDS-3UTR CAA 90 bp | GCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTGGTCTGGAACGCTGAGCCCCACAGAAGGTGCGGGTaGTGGACCCAGGGAAGACAT | + |
|
Preference number: 5 (lower is better) Translates to: ACQESPERGREVVWNAEPHRRCG*WTQGRH Trigger: ATGTCTTCCCTGGGTCCACAACCCGCACCTTCTGTG...GGGCTCAGCGTTCCAGACCACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS-3UTR CAA 90 bp | GCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTGGTCTGGAACGCTGAGCCCCGTTTTCCTGGGTGCTaGGTCAGGAACCCTTTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: ACQESPERGREVVWNAEPRFPGC*VRNPLQ Trigger: CTGCAAAGGGTTCCTGACCAAGCACCCAGGAAAACG...GGGCTCAGCGTTCCAGACCACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
||
| CDS TCA 90 bp | CAAAATACAGGCGGTCCGGAGTCTGAAAGGTGGAGTGAAGCTGCGTaGGAAAGTGTGGCCGGCCTCCAGGACCTCGGCCTCCCAATGCCA | + |
|
Preference number: 5 (lower is better) Translates to: QNTGGPESERWSEAA*ESVAGLQDLGLPMP Trigger: TGGCATTGGGAGGCCGAGGTCCTGGAGGCCGGCCACACTTTCTCACGCAGCTTCACTCCACCTTTCAGACTCCGGACCGCCTGTATTTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS TCA 90 bp | TCCAGTCTCTCCAACCTCTCCCAATCGATCCAACGGAAAAAGCCATaGGCCCGGATGGTGGGTTCCCCATCTGGCCCTGAGCCCAGGCGT | + |
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Preference number: 5 (lower is better) Translates to: SSLSNLSQSIQRKKP*ARMVGSPSGPEPRR Trigger: ACGCCTGGGCTCAGGGCCAGATGGGGAACCCACCATCCGGGCTCATGGCTTTTTCCGTTGGATCGATTGGGAGAGGTTGGAGAGACTGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS-3UTR CAA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTTGGAGGAGGCTGCAGTaGTCAGCATCGGCCACCGGT | + |
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Preference number: 5 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSWRRLQ*SASATG Trigger: ACCGGTGGCCGATGCTGACAACTGCAGCCTCCTCCA...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS CCA 90 bp | TTACATGACAGGCACGGGCACAGGGCTTGTGGGGCTGCGGGCATCTaGGTGCACGAAGTCCGGGTTCACATAAGTAAAGCCCTGGAAATC | + |
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Preference number: 5 (lower is better) Translates to: LHDRHGHRACGAAGI*VHEVRVHISKALEI Trigger: GATTTCCAGGGCTTTACTTATGTGAACCCGGACTTCGTGCACCCAGATGCCCGCAGCCCCACAAGCCCTGTGCCCGTGCCTGTCATGTAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS-3UTR CAA 90 bp | AGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGCCATCCACAGGGGCCTaGAGTAGCTCTGAGACACCA | + |
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Preference number: 5 (lower is better) Translates to: RGKEFLVHARNPQSVEGRPSTGA*SSSETP Trigger: TGGTGTCTCAGAGCTACTCAAGGCCCCTGTGGATGG...CCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | AGTAGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGCTGTGCAGACGGAACTaGTGCTTGTTGCGAGGGTCG | + |
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Preference number: 5 (lower is better) Translates to: SRGKEFLVHARNPQSVEGLCRRN*CLLRGS Trigger: CGACCCTCGCAACAAGCACAAGTTCCGTCTGCACAG...CCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCTACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | AGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTTGGTCAGGAACCCTTaGCAGATGGCCACAGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: RGKEFLVHARNPQSVEGRLVRNP*QMATAS Trigger: GGAAGCTGTGGCCATCTGCAAAGGGTTCCTGACCAA...CCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | GGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTCAGAAGGTTGGCTGCTaGAAGAAACGAGCGGTGAAC | + |
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Preference number: 5 (lower is better) Translates to: GGKNSWCMPGIPRAWKGGQKVGC*KKRAVN Trigger: GTTCACCGCTCGTTTCTTCAAGCAGCCAACCTTCTG...ACCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | CTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGAAGGATGCGGGGAGCCCAAAGAAGCATCGCTaGGAGTCCGTAGGACTGGGG | + |
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Preference number: 5 (lower is better) Translates to: LNSTTEVEVGGALKDAGSPKKHR*ESVGLG Trigger: CCCCAGTCCTACGGACTCCAAGCGATGCTTCTTTGG...GCTCCCCGCATCCTTCAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | CTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGAAGGATGCGGGGAGCAAACGAGCGGTGAACTaGTGGCTCTTCACCTCGTGG | + |
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Preference number: 5 (lower is better) Translates to: LNSTTEVEVGGALKDAGSKRAVN*WLFTSW Trigger: CCACGAGGTGAAGAGCCACAAGTTCACCGCTCGTTT...GCTCCCCGCATCCTTCAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS GCA 90 bp | AAAGTTTTCGCCACTGCGGCCACACGGACGTGGTCTGAAAGGAGGTaGAATTTCCAGTCTCTCCAACCTCTCCCAATCGATCCAACGGAA | + |
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Preference number: 5 (lower is better) Translates to: KVFATAATRTWSERR*NFQSLQPLPIDPTE Trigger: TTCCGTTGGATCGATTGGGAGAGGTTGGAGAGACTGGAAATTGCACCTCCTTTCAGACCACGTCCGTGTGGCCGCAGTGGCGAAAACTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS-3UTR CAA 90 bp | GCCTTGAAGGATGCGGGGAGCAGATCTGGAGTCTTAGTCTGGAGCAGGCAATCTTCCTGGTTCAGTAACTaGTACCATCCATCCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: ALKDAGSRSGVLVWSRQSSWFSN*YHPSTG Trigger: CCCTGTGGATGGATGGTACAAGTTACTGAACCAGGA...AGATTGCCTGCTCCAGACTAAGACTCCAGATCTGCTCCCCGCATCCTTCAAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | CTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGAAGGATGCGGGGAGCGCTACAGACTTGACATaGCAGGCCCTGCTTTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: LNSTTEVEVGGALKDAGSATDLT*QALLSN Trigger: ATTGGAAAGCAGGGCCTGCAATGTCAAGTCTGTAGC...GCTCCCCGCATCCTTCAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | AGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGAGGTGGCTTTCACGGTCTTaGTCTTCTGTTTTGTCAGGT | + |
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Preference number: 5 (lower is better) Translates to: RGKEFLVHARNPQSVEGRWLSRS*SSVLSG Trigger: ACCTGACAAAACAGAAGACAAAGACCGTGAAAGCCA...CCTCCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | GAGCCCAGACTCCCACTTAACTCTACAACTGAAGTGGAGGTAGGAGGAGCCTTGCCAAAGTCTGTGATCTaGATGTGTCCTTCAGCATCC | + |
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Preference number: 5 (lower is better) Translates to: EPRLPLNSTTEVEVGGALPKSVI*MCPSAS Trigger: GGATGCTGAAGGACACATCAAGATCACAGACTTTGG...CAAGGCTCCTCCTACCTCCACTTCAGTTGTAGAGTTAAGTGGGAGTCTGGGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | AGTAGGGGGAAAGAATTCTTGGTGCATGCCAGGAATCCCCAGAGCGTGGAAGGGTTGTTCCATGATGGCTaGAAACAACTCTTCCTCATC | + |
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Preference number: 5 (lower is better) Translates to: SRGKEFLVHARNPQSVEGLFHDG*KQLFLI Trigger: GATGAGGAAGAGTTGTTTCAAGCCATCATGGAACAA...CCCTTCCACGCTCTGGGGATTCCTGGCATGCACCAAGAATTCTTTCCCCCTACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | TCTGGAGTCTTAGTCTGGAGCAGGCAATCTCATGAGACTATTTTCCCCAGAATGCACAAAGCTACAGACTaGACATTGCAGGCCCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: SGVLVWSRQSHETIFPRMHKATD*TLQALL Trigger: AAGCAGGGCCTGCAATGTCAAGTCTGTAGCTTTGTG...CATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCCAGACTAAGACTCCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | ACGGAATCTAGAACACAGAAAGGCTCTAGAGACTCTTTGAGTTTAAAATGCCAGAGACGGAACTTGTGCTaGTTGCGAGGGTCGTCCGTC | + |
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Preference number: 5 (lower is better) Translates to: TESRTQKGSRDSLSLKCQRRNLC*LRGSSV Trigger: GACGGACGACCCTCGCAACAAGCACAAGTTCCGTCT...CTGGCATTTTAAACTCAAAGAGTCTCTAGAGCCTTTCTGTGTTCTAGATTCCGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS-3UTR CAA 90 bp | TCTGGAGTCTTAGTCTGGAGCAGGCAATCTCATGAGACTATTTTCCCCAGAATGGGGATAGGTGACAGTTaGTTCCATGATGGCTTGAAA | + |
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Preference number: 5 (lower is better) Translates to: SGVLVWSRQSHETIFPRMGIGDS*FHDGLK Trigger: TTTCAAGCCATCATGGAACAAACTGTCACCTATCCC...CATTCTGGGGAAAATAGTCTCATGAGATTGCCTGCTCCAGACTAAGACTCCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100301.11 |
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| CDS TCA 72 bp | GGCGGTCCGGAGTCTGAAAGGTGGAGTGAAGCTGCGTaGGAAAGTGTGGCCGGCCTCCAGGACCTCGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: GGPESERWSEAA*ESVAGLQDLGL Trigger: GAGGCCGAGGTCCTGGAGGCCGGCCACACTTTCTCACGCAGCTTCACTCCACCTTTCAGACTCCGGACCGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS CCA 72 bp | GCGAGGGTCGTCCGTCTGGGGGCCCTTTCCAGCGCCTaGACACTCGAAGGTCACAAATTCGTGGCATCGGCG | + |
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Preference number: 6 (lower is better) Translates to: ARVVRLGALSSA*TLEGHKFVASA Trigger: CGCCGATGCCACGAATTTGTGACCTTCGAGTGTCCAGGCGCTGGAAAGGGCCCCCAGACGGACGACCCTCGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS CCA 72 bp | AGACGGAACTTGTGCTTGTTGCGAGGGTCGTCCGTCTaGGGGCCCTTTCCAGCGCCTGGACACTCGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: RRNLCLLRGSSV*GPFPAPGHSKV Trigger: GACCTTCGAGTGTCCAGGCGCTGGAAAGGGCCCCCAGACGGACGACCCTCGCAACAAGCACAAGTTCCGTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS CCA 72 bp | TCTCGCAACGTCCGTCTGGGGGCCCTTTCCAGCGCCTaGACACTCGAAGGTCACAAATTCGTGGCATCGGCG | + |
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Preference number: 6 (lower is better) Translates to: SRNVRLGALSSA*TLEGHKFVASA Trigger: CGCCGATGCCACGAATTTGTGACCTTCGAGTGTCCAGGCGCTGGAAAGGGCCCCCAGACGGACGTTGCGAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203081.2 |
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| CDS GCA 72 bp | CCGCAAAGGGAGGGCACGCTGCGCACACAGCGCCGGTaGACATTCATCTCGCAACAGGAACATTTCATGCCC | + |
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Preference number: 6 (lower is better) Translates to: PQREGTLRTQRR*TFISQQEHFMP Trigger: GGGCATGAAATGTTCCTGTTGCGAGATGAATGTGCACCGGCGCTGTGTGCGCAGCGTGCCCTCCCTTTGCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS GCA 72 bp | TCCCCATCTGGCCCTGAGCCCAGGCGTTTTCCTGGGTaGTTGGTCAGGAACCCTTTGCAGATGGCCACAGCT | + |
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Preference number: 6 (lower is better) Translates to: SPSGPEPRRFPG*LVRNPLQMATA Trigger: AGCTGTGGCCATCTGCAAAGGGTTCCTGACCAAGCACCCAGGAAAACGCCTGGGCTCAGGGCCAGATGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS CCA 72 bp | AGTCTGAAAGGTGGAGTGAAGCTGCGTGAGAAAGTGTaGCCGGCCTCCAGGACCTCGGCCTCCCAATGCCAG | + |
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Preference number: 6 (lower is better) Translates to: SLKGGVKLREKV*PASRTSASQCQ Trigger: CTGGCATTGGGAGGCCGAGGTCCTGGAGGCCGGCCACACTTTCTCACGCAGCTTCACTCCACCTTTCAGACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS TCA 72 bp | TCCAACCTCTCCCAATCGATCCAACGGAAAAAGCCATaGGCCCGGATGGTGGGTTCCCCATCTGGCCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SNLSQSIQRKKP*ARMVGSPSGPE Trigger: CTCAGGGCCAGATGGGGAACCCACCATCCGGGCTCATGGCTTTTTCCGTTGGATCGATTGGGAGAGGTTGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS GCA 72 bp | GCCGGTGCACATTCATCTCGCAACAGGAACATTTCATaGCCTGGTGCACCAGCCCGTAAAGGAGGGAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: AGAHSSRNRNIS*PGAPARKGGSH Trigger: GTGGCTCCCTCCTTTACGGGCTGGTGCACCAGGGCATGAAATGTTCCTGTTGCGAGATGAATGTGCACCGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS GCA 72 bp | GCCACTGCGGCCACACGGACGTGGTCTGAAAGGAGGTaGAATTTCCAGTCTCTCCAACCTCTCCCAATCGAT | + |
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Preference number: 6 (lower is better) Translates to: ATAATRTWSERR*NFQSLQPLPID Trigger: ATCGATTGGGAGAGGTTGGAGAGACTGGAAATTGCACCTCCTTTCAGACCACGTCCGTGTGGCCGCAGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS TCA 72 bp | CAAAGTTTTCGCCACTGCGGCCACACGGACGTGGTCTaGAAGGAGGTGCAATTTCCAGTCTCTCCAACCTCT | + |
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Preference number: 6 (lower is better) Translates to: QSFRHCGHTDVV*KEVQFPVSPTS Trigger: AGAGGTTGGAGAGACTGGAAATTGCACCTCCTTTCAGACCACGTCCGTGTGGCCGCAGTGGCGAAAACTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS GCA 72 bp | GAAGAGGCCTATGGCGATTTCCGCAGCGTAGAATGCTaGATGAGGCTCCTTAAACTTGCCCAGTTGCTGGAT | + |
|
Preference number: 6 (lower is better) Translates to: EEAYGDFRSVEC*MRLLKLAQLLD Trigger: ATCCAGCAACTGGGCAAGTTTAAGGAGCCTCATGCAGCATTCTACGCTGCGGAAATCGCCATAGGCCTCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS CCA 72 bp | CTTGTCAAAGTTTTCGCCACTGCGGCCACACGGACGTaGTCTGAAAGGAGGTGCAATTTCCAGTCTCTCCAA | + |
|
Preference number: 6 (lower is better) Translates to: LVKVFATAATRT*SERRCNFQSLQ Trigger: TTGGAGAGACTGGAAATTGCACCTCCTTTCAGACCACGTCCGTGTGGCCGCAGTGGCGAAAACTTTGACAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100301.11 ENSMUST00000172109.4 |
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| CDS GCA 72 bp | CTTGATGGCATAGAGTTCGTCGGAGCCTCTGCGCTCTaGCAGCATTACCTCATACAATTCCAAGGGGTAATT | + |
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Preference number: 6 (lower is better) Translates to: LDGIEFVGASAL*QHYLIQFQGVI Trigger: AATTACCCCTTGGAATTGTATGAGGTAATGCTGGCAGAGCGCAGAGGCTCCGACGAACTCTATGCCATCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172109.4 |
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