Pregenerated sensors for PRKAR2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032601Ensembl transcript IDs: ENSMUST00000035220.12, ENSMUST00000192068.2, ENSMUST00000192344.2, ENSMUST00000195405.6
Found 131 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGTGGCTGTTACAGTGCTGGAGACCAAACCCAGAGCCTTGCACGTaGCCCGTGTGCTTTGTCACCGAGCTGCACCCAGCCCCTACCCCC | + |
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Preference number: 1 (lower is better) Translates to: LWLLQCWRPNPEPCT*PVCFVTELHPAPTP Trigger: GGGGGTAGGGGCTGGGTGCAGCTCGGTGACAAAGCACACGGGGCACGTGCAAGGCTCTGGGTTTGGTCTCCAGCACTGTAACAGCCACAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR TCA 90 bp | AAGCTGCAGAGAGACCTGGAATACTGTCAGGGCCTGGCACTGTGGTaGCAGCCATCTTTCACCACCACCGGAGCTCCCGCAGACTCCGTG | + |
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Preference number: 1 (lower is better) Translates to: KLQRDLEYCQGLALW*QPSFTTTGAPADSV Trigger: CACGGAGTCTGCGGGAGCTCCGGTGGTGGTGAAAGATGGCTGTCACCACAGTGCCAGGCCCTGACAGTATTCCAGGTCTCTCTGCAGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR TCA 90 bp | TCTCTGTGCAGCACAGCCTCCTGCTGGCTTCCCGCTATCAGCCAGTaGAAGGGACAGGCAGGGCTCACTCAGGGAAGTACTCAGGTCAGA | + |
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Preference number: 1 (lower is better) Translates to: SLCSTASCWLPAISQ*KGQAGLTQGSTQVR Trigger: TCTGACCTGAGTACTTCCCTGAGTGAGCCCTGCCTGTCCCTTTCACTGGCTGATAGCGGGAAGCCAGCAGGAGGCTGTGCTGCACAGAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR TCA 90 bp | GCGGCTCCGCCACCACAAGCAGAGAATCTGGGCAGTCAGGGTGCATaGGGCCCCTCCGGCTGGAGTGCAGGGCTTTCTTTTTCTTTCTTT | + |
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Preference number: 1 (lower is better) Translates to: AAPPPQAENLGSQGA*GPSGWSAGLSFSFF Trigger: AAAGAAAGAAAAAGAAAGCCCTGCACTCCAGCCGGAGGGGCCTCATGCACCCTGACTGCCCAGATTCTCTGCTTGTGGTGGCGGAGCCGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR GCA 90 bp | CATAGCGGCTCCGCCACCACAAGCAGAGAATCTGGGCAGTCAGGGTaGATGAGGCCCCTCCGGCTGGAGTGCAGGGCTTTCTTTTTCTTT | + |
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Preference number: 1 (lower is better) Translates to: HSGSATTSRESGQSG*MRPLRLECRAFFFF Trigger: AAAGAAAAAGAAAGCCCTGCACTCCAGCCGGAGGGGCCTCATGCACCCTGACTGCCCAGATTCTCTGCTTGTGGTGGCGGAGCCGCTATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR GCA 90 bp | TCTGATACTCCTCCTAGGGCCCAGCCATCTGCTGTGGGAGTTGCCTaGCACAATGGGGACCCTGCAACCGTGAGAAAAACCTGGTCTGTC | + |
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Preference number: 1 (lower is better) Translates to: SDTPPRAQPSAVGVA*HNGDPATVRKTWSV Trigger: GACAGACCAGGTTTTTCTCACGGTTGCAGGGTCCCCATTGTGGCAGGCAACTCCCACAGCAGATGGCTGGGCCCTAGGAGGAGTATCAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR TCA 90 bp | GGGACAGGCAGGGCTCACTCAGGGAAGTACTCAGGTCAGATAAAGTaGCAACACCTCCAGACCCTGGCTCCTCATATCAGCACCATGCCC | + |
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Preference number: 1 (lower is better) Translates to: GTGRAHSGKYSGQIK*QHLQTLAPHISTMP Trigger: GGGCATGGTGCTGATATGAGGAGCCAGGGTCTGGAGGTGTTGTCACTTTATCTGACCTGAGTACTTCCCTGAGTGAGCCCTGCCTGTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CCA 90 bp | GGCAGGAGAGTCACAGCCAGCCTTATCCAACGCTGGCATGGAGGGTaGGGGAGGGTTCAGAGTCTTTATAAGGTCTGGGGTTGGACTTCT | + |
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Preference number: 1 (lower is better) Translates to: GRRVTASLIQRWHGG*GRVQSLYKVWGWTS Trigger: AGAAGTCCAACCCCAGACCTTATAAAGACTCTGAACCCTCCCCCACCCTCCATGCCAGCGTTGGATAAGGCTGGCTGTGACTCTCCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CCA 90 bp | AGGAATAACTCTGGCAGGAGAGTCACAGCCAGCCTTATCCAACGCTaGCATGGAGGGTGGGGGAGGGTTCAGAGTCTTTATAAGGTCTGG | + |
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Preference number: 1 (lower is better) Translates to: RNNSGRRVTASLIQR*HGGWGRVQSLYKVW Trigger: CCAGACCTTATAAAGACTCTGAACCCTCCCCCACCCTCCATGCCAGCGTTGGATAAGGCTGGCTGTGACTCTCCTGCCAGAGTTATTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR TCA 90 bp | CAATGGGGACCCTGCAACCGTGAGAAAAACCTGGTCTGTCACCTCTaGTTCTCTAAGCTGCAGAGAGACCTGGAATACTGTCAGGGCCTG | + |
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Preference number: 1 (lower is better) Translates to: QWGPCNREKNLVCHL*FSKLQRDLEYCQGL Trigger: CAGGCCCTGACAGTATTCCAGGTCTCTCTGCAGCTTAGAGAATCAGAGGTGACAGACCAGGTTTTTCTCACGGTTGCAGGGTCCCCATTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR GCA 90 bp | GCAACCGTGAGAAAAACCTGGTCTGTCACCTCTGATTCTCTAAGCTaGAGAGAGACCTGGAATACTGTCAGGGCCTGGCACTGTGGTGAC | + |
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Preference number: 1 (lower is better) Translates to: ATVRKTWSVTSDSLS*RETWNTVRAWHCGD Trigger: GTCACCACAGTGCCAGGCCCTGACAGTATTCCAGGTCTCTCTGCAGCTTAGAGAATCAGAGGTGACAGACCAGGTTTTTCTCACGGTTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR GCA 90 bp | GACGGAAGGCTCTACCATTTTCTCCCTCGAGAAGGACTGCGGAGGTaGTGTCTACAGCTACTCAACAGGTGTCTGCAGACCTTAGAACTT | + |
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Preference number: 1 (lower is better) Translates to: DGRLYHFLPREGLRR*CLQLLNRCLQTLEL Trigger: AAGTTCTAAGGTCTGCAGACACCTGTTGAGTAGCTGTAGACAGCACCTCCGCAGTCCTTCTCGAGGGAGAAAATGGTAGAGCCTTCCGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR GCA 90 bp | GCTGGGCCTCTTTCTGAGTTTAGACACAGCTGTAAAGTGTGTAGCTaGCAGCAAATGGTACAGAGCCTCTGGGGCAGAGACCTCCAGTAT | + |
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Preference number: 1 (lower is better) Translates to: AGPLSEFRHSCKVCS*QQMVQSLWGRDLQY Trigger: ATACTGGAGGTCTCTGCCCCAGAGGCTCTGTACCATTTGCTGGCAGCTACACACTTTACAGCTGTGTCTAAACTCAGAAAGAGGCCCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CCA 90 bp | TCCTGCAGAGAATTCAACCAAGAGAAGACAGTGAGTGGGCTAAGCTaGGGCAGAAAGGAAGAGAAATACTGCAGCTGGACCTCACGGCTC | + |
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Preference number: 1 (lower is better) Translates to: SCREFNQEKTVSGLS*GRKEEKYCSWTSRL Trigger: GAGCCGTGAGGTCCAGCTGCAGTATTTCTCTTCCTTTCTGCCCCAGCTTAGCCCACTCACTGTCTTCTCTTGGTTGAATTCTCTGCAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CCA 90 bp | AAAACCTGGTCTGTCACCTCTGATTCTCTAAGCTGCAGAGAGACCTaGAATACTGTCAGGGCCTGGCACTGTGGTGACAGCCATCTTTCA | + |
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Preference number: 1 (lower is better) Translates to: KTWSVTSDSLSCRET*NTVRAWHCGDSHLS Trigger: TGAAAGATGGCTGTCACCACAGTGCCAGGCCCTGACAGTATTCCAGGTCTCTCTGCAGCTTAGAGAATCAGAGGTGACAGACCAGGTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR TCA 90 bp | AGTGGAGGGTGGGTGTGGGTGGAACCTCCATCCATCTTTCAGTGCTaGCTTTCAAGATTTCTAAATGCCCTTAACCACAGCAATGGCAGC | + |
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Preference number: 1 (lower is better) Translates to: SGGWVWVEPPSIFQC*LSRFLNALNHSNGS Trigger: GCTGCCATTGCTGTGGTTAAGGGCATTTAGAAATCTTGAAAGTCAGCACTGAAAGATGGATGGAGGTTCCACCCACACCCACCCTCCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CCA 90 bp | TTTCTGAGTTTAGACACAGCTGTAAAGTGTGTAGCTGCCAGCAAATaGTACAGAGCCTCTGGGGCAGAGACCTCCAGTATAACTGCTACC | + |
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Preference number: 1 (lower is better) Translates to: FLSLDTAVKCVAASK*YRASGAETSSITAT Trigger: GGTAGCAGTTATACTGGAGGTCTCTGCCCCAGAGGCTCTGTACCATTTGCTGGCAGCTACACACTTTACAGCTGTGTCTAAACTCAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR TCA 90 bp | TGGCTACTACTGGAAAGAGTGTTGAATCCAAGTTTCCTGCTAACGTaGGTCTTAGTACTCAATCTGCCCATACGGATCTGCTGGGCCTCT | + |
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Preference number: 1 (lower is better) Translates to: WLLLERVLNPSFLLT*VLVLNLPIRICWAS Trigger: AGAGGCCCAGCAGATCCGTATGGGCAGATTGAGTACTAAGACTCACGTTAGCAGGAAACTTGGATTCAACACTCTTTCCAGTAGTAGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR TCA 90 bp | GAGAGACATTCTGAACCAAATGTGAAACCTGGGTTGGAGTACTCATaGCATAAGTGGTCTAATGACGGCGTTCAGAAGCAAAGTGGAGGG | + |
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Preference number: 1 (lower is better) Translates to: ERHSEPNVKPGLEYS*HKWSNDGVQKQSGG Trigger: CCCTCCACTTTGCTTCTGAACGCCGTCATTAGACCACTTATGTCATGAGTACTCCAACCCAGGTTTCACATTTGGTTCAGAATGTCTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR TCA 90 bp | ACGTTAGCAGCAAGAGAGGAAAGGAGGGTGTTACGCTTTGGACTTTaGATCAGGCACTTAAATTGCTGGAGAGACATTCTGAACCAAATG | + |
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Preference number: 1 (lower is better) Translates to: TLAAREERRVLRFGL*IRHLNCWRDILNQM Trigger: CATTTGGTTCAGAATGTCTCTCCAGCAATTTAAGTGCCTGATTCAAAGTCCAAAGCGTAACACCCTCCTTTCCTCTCTTGCTGCTAACGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CCA 90 bp | AGAAGCAACGTTAGCAGCAAGAGAGGAAAGGAGGGTGTTACGCTTTaGACTTTGAATCAGGCACTTAAATTGCTGGAGAGACATTCTGAA | + |
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Preference number: 1 (lower is better) Translates to: RSNVSSKRGKEGVTL*TLNQALKLLERHSE Trigger: TTCAGAATGTCTCTCCAGCAATTTAAGTGCCTGATTCAAAGTCCAAAGCGTAACACCCTCCTTTCCTCTCTTGCTGCTAACGTTGCTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR TCA 90 bp | GCACATAGCGGCTCCGCCACCACAAGCAGAGAATCTGGGCAGTCAGGGTGCATGCGTGTACCTCTCCCATaGCCCCGTCACACGTGCCCC | + |
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Preference number: 2 (lower is better) Translates to: AHSGSATTSRESGQSGCMRVPLP*PRHTCP Trigger: GGGGCACGTGTGACGGGGTCATGGGAGAGGTACACG...CATGCACCCTGACTGCCCAGATTCTCTGCTTGTGGTGGCGGAGCCGCTATGTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR CCA 90 bp | GGAGGAGGGAGGGAAAGGCGCACCCTCAGAAGAGAGGAGCTACCTAAGGAATCTCGCTGGCATGGAGGGTaGGGGAGGGTTCAGAGTCTT | + |
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Preference number: 2 (lower is better) Translates to: GGGRERRTLRREELPKESRWHGG*GRVQSL Trigger: AAGACTCTGAACCCTCCCCCACCCTCCATGCCAGCG...AGATTCCTTAGGTAGCTCCTCTCTTCTGAGGGTGCGCCTTTCCCTCCCTCCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR TCA 90 bp | CTATGCAGTAACGCTAGAAGGGAAGGAGTTCTCTGTGCAGCACAGCCTCCTGCTCCCGCTATCAGCCAGTaGAAGGGACAGGCAGGGCTC | + |
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Preference number: 2 (lower is better) Translates to: LCSNARREGVLCAAQPPAPAISQ*KGQAGL Trigger: GAGCCCTGCCTGTCCCTTTCACTGGCTGATAGCGGG...AGCAGGAGGCTGTGCTGCACAGAGAACTCCTTCCCTTCTAGCGTTACTGCATAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR TCA 90 bp | GGAAGGCTGCTCCCCATAGCACAGACATCAGAATCACGGAGAACGTCAGCAGTCGGCCTGGCACTGTGGTaGCAGCCATCTTTCACCACC | + |
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Preference number: 2 (lower is better) Translates to: GRLLPIAQTSESRRTSAVGLALW*QPSFTT Trigger: GGTGGTGAAAGATGGCTGTCACCACAGTGCCAGGCC...GACTGCTGACGTTCTCCGTGATTCTGATGTCTGTGCTATGGGGAGCAGCCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR GCA 90 bp | CCAGAGCCTTGCACGTGCCCCGTGTGCTTTGTCACCGAGCTGCACCCAGCCCCTTGTAAAGTGTGTAGCTaGCAGCAAATGGTACAGAGC | + |
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Preference number: 2 (lower is better) Translates to: PEPCTCPVCFVTELHPAPCKVCS*QQMVQS Trigger: GCTCTGTACCATTTGCTGGCAGCTACACACTTTACA...AGGGGCTGGGTGCAGCTCGGTGACAAAGCACACGGGGCACGTGCAAGGCTCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR GCA 90 bp | GGAAGGCTGCTCCCCATAGCACAGACATCAGAATCACGGAGAACGTCAGCAGTCGCTGTGGGAGTTGCCTaGCACAATGGGGACCCTGCA | + |
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Preference number: 2 (lower is better) Translates to: GRLLPIAQTSESRRTSAVAVGVA*HNGDPA Trigger: TGCAGGGTCCCCATTGTGGCAGGCAACTCCCACAGC...GACTGCTGACGTTCTCCGTGATTCTGATGTCTGTGCTATGGGGAGCAGCCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR CCA 90 bp | GGAGGAGGGAGGGAAAGGCGCACCCTCAGAAGAGAGGAGCTACCTAAGGAATCTAGTGGAGGGTGGGTGTaGGTGGAACCTCCATCCATC | + |
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Preference number: 2 (lower is better) Translates to: GGGRERRTLRREELPKESSGGWV*VEPPSI Trigger: GATGGATGGAGGTTCCACCCACACCCACCCTCCACT...AGATTCCTTAGGTAGCTCCTCTCTTCTGAGGGTGCGCCTTTCCCTCCCTCCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR CCA 90 bp | GGAGGAGGGAGGGAAAGGCGCACCCTCAGAAGAGAGGAGCTACCTAAGGAATCTCGTTCAGAAGCAAAGTaGAGGGTGGGTGTGGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: GGGRERRTLRREELPKESRSEAK*RVGVGG Trigger: TCCACCCACACCCACCCTCCACTTTGCTTCTGAACG...AGATTCCTTAGGTAGCTCCTCTCTTCTGAGGGTGCGCCTTTCCCTCCCTCCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR CCA 90 bp | GGAGGAGGGAGGGAAAGGCGCACCCTCAGAAGAGAGGAGCTACCTAAGGAATCTAGCTGCAGAGAGACCTaGAATACTGTCAGGGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: GGGRERRTLRREELPKESSCRET*NTVRAW Trigger: CCAGGCCCTGACAGTATTCCAGGTCTCTCTGCAGCT...AGATTCCTTAGGTAGCTCCTCTCTTCTGAGGGTGCGCCTTTCCCTCCCTCCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR GCA 90 bp | AGGAGCTACCTAAGGAATCTTTCTGATACTCCTCCTAGGGCCCAGCCATCTGCTTGCAGCACAGCCTCCTaGTGGCTTCCCGCTATCAGC | + |
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Preference number: 2 (lower is better) Translates to: RSYLRNLSDTPPRAQPSACSTAS*WLPAIS Trigger: GCTGATAGCGGGAAGCCAGCAGGAGGCTGTGCTGCA...AGCAGATGGCTGGGCCCTAGGAGGAGTATCAGAAAGATTCCTTAGGTAGCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR CCA 90 bp | GGAAGGCTGCTCCCCATAGCACAGACATCAGAATCACGGAGAACGTCAGCAGTCGAGGGTGGGTGTGGGTaGAACCTCCATCCATCTTTC | + |
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Preference number: 2 (lower is better) Translates to: GRLLPIAQTSESRRTSAVEGGCG*NLHPSF Trigger: GAAAGATGGATGGAGGTTCCACCCACACCCACCCTC...GACTGCTGACGTTCTCCGTGATTCTGATGTCTGTGCTATGGGGAGCAGCCTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR TCA 90 bp | GCACATAGCGGCTCCGCCACCACAAGCAGAGAATCTGGGCAGTCAGGGTGCATGTTTAGGACAAATGCCTaGGTCAGTGGACAAACTCCA | + |
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Preference number: 2 (lower is better) Translates to: AHSGSATTSRESGQSGCMFRTNA*VSGQTP Trigger: TGGAGTTTGTCCACTGACTCAGGCATTTGTCCTAAA...CATGCACCCTGACTGCCCAGATTCTCTGCTTGTGGTGGCGGAGCCGCTATGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR GCA 90 bp | GGAGGAGGGAGGGAAAGGCGCACCCTCAGAAGAGAGGAGCTACCTAAGGAATCTCCAGTGCTAGCTGCCTaGTTCATAGTAGTAGTTACG | + |
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Preference number: 2 (lower is better) Translates to: GGGRERRTLRREELPKESPVLAA*FIVVVT Trigger: CGTAACTACTACTATGAAGCAGGCAGCTAGCACTGG...AGATTCCTTAGGTAGCTCCTCTCTTCTGAGGGTGCGCCTTTCCCTCCCTCCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR CCA 90 bp | GGAAGGCTGCTCCCCATAGCACAGACATCAGAATCACGGAGAACGTCAGCAGTCGTGAGTGGGCTAAGCTaGGGCAGAAAGGAAGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: GRLLPIAQTSESRRTSAVVSGLS*GRKEEK Trigger: TTTCTCTTCCTTTCTGCCCCAGCTTAGCCCACTCAC...GACTGCTGACGTTCTCCGTGATTCTGATGTCTGTGCTATGGGGAGCAGCCTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR CCA 90 bp | GGAGGAGGGAGGGAAAGGCGCACCCTCAGAAGAGAGGAGCTACCTAAGGAATCTGAGGGTGTTACGCTTTaGACTTTGAATCAGGCACTT | + |
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Preference number: 2 (lower is better) Translates to: GGGRERRTLRREELPKESEGVTL*TLNQAL Trigger: AAGTGCCTGATTCAAAGTCCAAAGCGTAACACCCTC...AGATTCCTTAGGTAGCTCCTCTCTTCTGAGGGTGCGCCTTTCCCTCCCTCCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CAA 90 bp | CAGCAGCAGGAGCGGTTCTGTCGTGTCTGTTTTCTGTGTGTGTTCTaGTGGCTGACTGGAAGGTTTTGGTATCACACTGAGAAGGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: QQQERFCRVCFLCVF*WLTGRFWYHTEKAP Trigger: TGGAGCCTTCTCAGTGTGATACCAAAACCTTCCAGTCAGCCACAAGAACACACACAGAAAACAGACACGACAGAACCGCTCCTGCTGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR TCA 90 bp | ACTGTGACACGCCATAAAATGCTGTGTGCACAGGGCGCTGGGACACCAGCAGCAAGTTTCCTGCTAACGTaGGTCTTAGTACTCAATCTG | + |
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Preference number: 2 (lower is better) Translates to: TVTRHKMLCAQGAGTPAASFLLT*VLVLNL Trigger: CAGATTGAGTACTAAGACTCACGTTAGCAGGAAACT...TGCTGCTGGTGTCCCAGCGCCCTGTGCACACAGCATTTTATGGCGTGTCACAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR GCA 90 bp | GGAAGGCTGCTCCCCATAGCACAGACATCAGAATCACGGAGAACGTCAGCAGTCCAAAAGAGCCTGTCCTaGAGAGAATTCAACCAAGAG | + |
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Preference number: 2 (lower is better) Translates to: GRLLPIAQTSESRRTSAVQKSLS*REFNQE Trigger: CTCTTGGTTGAATTCTCTGCAGGACAGGCTCTTTTG...GACTGCTGACGTTCTCCGTGATTCTGATGTCTGTGCTATGGGGAGCAGCCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR TCA 90 bp | AGGAGCTACCTAAGGAATCTTTCTGATACTCCTCCTAGGGCCCAGCCATCTGCTGCTGGAGAGACATTCTaGACCAAATGTGAAACCTGG | + |
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Preference number: 2 (lower is better) Translates to: RSYLRNLSDTPPRAQPSAAGETF*TKCETW Trigger: CCAGGTTTCACATTTGGTTCAGAATGTCTCTCCAGC...AGCAGATGGCTGGGCCCTAGGAGGAGTATCAGAAAGATTCCTTAGGTAGCTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR GCA 90 bp | ACTGTGACACGCCATAAAATGCTGTGTGCACAGGGCGCTGGGACACCAGCAGCAATCAGGCACTTAAATTaGTGGAGAGACATTCTGAAC | + |
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Preference number: 2 (lower is better) Translates to: TVTRHKMLCAQGAGTPAAIRHLN*WRDILN Trigger: GTTCAGAATGTCTCTCCAGCAATTTAAGTGCCTGAT...TGCTGCTGGTGTCCCAGCGCCCTGTGCACACAGCATTTTATGGCGTGTCACAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR TCA 90 bp | CTATGCAGTAACGCTAGAAGGGAAGGAGTTCTCTGTGCAGCACAGCCTCCTGCTGTTTTGGTATCACACTaGGAAGGCTCCAAGATTCAT | + |
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Preference number: 2 (lower is better) Translates to: LCSNARREGVLCAAQPPAVLVSH*EGSKIH Trigger: ATGAATCTTGGAGCCTTCTCAGTGTGATACCAAAAC...AGCAGGAGGCTGTGCTGCACAGAGAACTCCTTCCCTTCTAGCGTTACTGCATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CAA 90 bp | GTTGGACTTCTGGGCTACTCCTGGAGCCCAATGCACCTCTTACCTTaGCAAGAAATCAGGTGTTATTCTGTCAAAGTACAAGGCCTGATT | + |
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Preference number: 2 (lower is better) Translates to: VGLLGYSWSPMHLLP*QEIRCYSVKVQGLI Trigger: AATCAGGCCTTGTACTTTGACAGAATAACACCTGATTTCTTGCAAAGGTAAGAGGTGCATTGGGCTCCAGGAGTAGCCCAGAAGTCCAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR TCA 90 bp | TTACCTTTGCAAGAAATCAGGTGTTATTCTGTCAAAGTACAAGGCCTGATTTATCATGCCCTGACCAGCTaGGCTAACCAGCCACCCCTG | + |
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Preference number: 2 (lower is better) Translates to: LPLQEIRCYSVKVQGLIYHALTS*ANQPPL Trigger: CAGGGGTGGCTGGTTAGCTCAGCTGGTCAGGGCATG...ATAAATCAGGCCTTGTACTTTGACAGAATAACACCTGATTTCTTGCAAAGGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CAA 90 bp | GGAAAGGAGGGTGTTACGCTTTGGACTTTGAATCAGGCACTTAAATaGCTGGAGAGACATTCTGAACCAAATGTGAAACCTGGGTTGGAG | + |
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Preference number: 2 (lower is better) Translates to: GKEGVTLWTLNQALK*LERHSEPNVKPGLE Trigger: CTCCAACCCAGGTTTCACATTTGGTTCAGAATGTCTCTCCAGCAATTTAAGTGCCTGATTCAAAGTCCAAAGCGTAACACCCTCCTTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR-3UTR CCA 90 bp | TTACCTTTGCAAGAAATCAGGTGTTATTCTGTCAAAGTACAAGGCCTGATTTATAGCACAGCCTCCTGCTaGCTTCCCGCTATCAGCCAG | + |
|
Preference number: 2 (lower is better) Translates to: LPLQEIRCYSVKVQGLIYSTASC*LPAISQ Trigger: CTGGCTGATAGCGGGAAGCCAGCAGGAGGCTGTGCT...ATAAATCAGGCCTTGTACTTTGACAGAATAACACCTGATTTCTTGCAAAGGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CCA 90 bp | TTTGAGGGTTTTCCAGTGCTAGCTGCCTGCTTCATAGTAGTAGTTACGACTGTAGTTCTTGTGGCTGACTaGAAGGTTTTGGTATCACAC | + |
|
Preference number: 2 (lower is better) Translates to: FEGFPVLAACFIVVVTTVVLVAD*KVLVSH Trigger: GTGTGATACCAAAACCTTCCAGTCAGCCACAAGAAC...TACAGTCGTAACTACTACTATGAAGCAGGCAGCTAGCACTGGAAAACCCTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CAA 90 bp | AACGTTAGCAGCAAGAGAGGAAAGGAGGGTGTTACGCTTTGGACTTaGAATCAGGCACTTAAATTGCTGGAGAGACATTCTGAACCAAAT | + |
|
Preference number: 2 (lower is better) Translates to: NVSSKRGKEGVTLWT*NQALKLLERHSEPN Trigger: ATTTGGTTCAGAATGTCTCTCCAGCAATTTAAGTGCCTGATTCAAAGTCCAAAGCGTAACACCCTCCTTTCCTCTCTTGCTGCTAACGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CCA 90 bp | AGGAAAATTCGGGATCACTTTGAGGGTTTTCCAGTGCTAGCTGCCTGCTTCATAAGGCACTTAAATTGCTaGAGAGACATTCTGAACCAA | + |
|
Preference number: 2 (lower is better) Translates to: RKIRDHFEGFPVLAACFIRHLNC*RDILNQ Trigger: TTGGTTCAGAATGTCTCTCCAGCAATTTAAGTGCCT...TATGAAGCAGGCAGCTAGCACTGGAAAACCCTCAAAGTGATCCCGAATTTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR GCA 90 bp | AAAACAAGGAATCTAATCTTTGTTCAAGGTGGGCTAAATGGTTTTCTGCAAATCCCCCTCCGGCTGGAGTaGAGGGCTTTCTTTTTCTTT | + |
|
Preference number: 2 (lower is better) Translates to: KTRNLIFVQGGLNGFLQIPLRLE*RAFFFF Trigger: AAAGAAAAAGAAAGCCCTGCACTCCAGCCGGAGGGG...GATTTGCAGAAAACCATTTAGCCCACCTTGAACAAAGATTAGATTCCTTGTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CCA 90 bp | AAAACAAGGAATCTAATCTTTGTTCAAGGTGGGCTAAATGGTTTTCTGCAAATCCTTCTGGGCTACTCCTaGAGCCCAATGCACCTCTTA | + |
|
Preference number: 2 (lower is better) Translates to: KTRNLIFVQGGLNGFLQILLGYS*SPMHLL Trigger: TAAGAGGTGCATTGGGCTCCAGGAGTAGCCCAGAAG...GATTTGCAGAAAACCATTTAGCCCACCTTGAACAAAGATTAGATTCCTTGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CCA 90 bp | AAAACAAGGAATCTAATCTTTGTTCAAGGTGGGCTAAATGGTTTTCTGCAAATCAATACTGTCAGGGCCTaGCACTGTGGTGACAGCCAT | + |
|
Preference number: 2 (lower is better) Translates to: KTRNLIFVQGGLNGFLQINTVRA*HCGDSH Trigger: ATGGCTGTCACCACAGTGCCAGGCCCTGACAGTATT...GATTTGCAGAAAACCATTTAGCCCACCTTGAACAAAGATTAGATTCCTTGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CCA 90 bp | AAAACAAGGAATCTAATCTTTGTTCAAGGTGGGCTAAATGGTTTTCTGCAAATCAGAGAAGACAGTGAGTaGGCTAAGCTGGGGCAGAAA | + |
|
Preference number: 2 (lower is better) Translates to: KTRNLIFVQGGLNGFLQIREDSE*AKLGQK Trigger: TTTCTGCCCCAGCTTAGCCCACTCACTGTCTTCTCT...GATTTGCAGAAAACCATTTAGCCCACCTTGAACAAAGATTAGATTCCTTGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CCA 90 bp | AAAACAAGGAATCTAATCTTTGTTCAAGGTGGGCTAAATGGTTTTCTGCAAATCCTGACTGGAAGGTTTTaGTATCACACTGAGAAGGCT | + |
|
Preference number: 2 (lower is better) Translates to: KTRNLIFVQGGLNGFLQILTGRF*YHTEKA Trigger: AGCCTTCTCAGTGTGATACCAAAACCTTCCAGTCAG...GATTTGCAGAAAACCATTTAGCCCACCTTGAACAAAGATTAGATTCCTTGTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CCA 90 bp | TTACCTTTGCAAGAAATCAGGTGTTATTCTGTCAAAGTACAAGGCCTGATTTATGCAACTCACCTGCTTTaGACATTTCTTGGCTATGGT | + |
|
Preference number: 2 (lower is better) Translates to: LPLQEIRCYSVKVQGLIYATHLL*TFLGYG Trigger: ACCATAGCCAAGAAATGTCCAAAGCAGGTGAGTTGC...ATAAATCAGGCCTTGTACTTTGACAGAATAACACCTGATTTCTTGCAAAGGTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR TCA 90 bp | AAAACAAGGAATCTAATCTTTGTTCAAGGTGGGCTAAATGGTTTTCTGCAAATCAGCAGAACTTGGACTTaGTGCCTTCTCTGTAAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: KTRNLIFVQGGLNGFLQISRTWT*CLLCKR Trigger: TCTTTTACAGAGAAGGCATCAAGTCCAAGTTCTGCT...GATTTGCAGAAAACCATTTAGCCCACCTTGAACAAAGATTAGATTCCTTGTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR TCA 90 bp | TTACCTTTGCAAGAAATCAGGTGTTATTCTGTCAAAGTACAAGGCCTGATTTATTTACGCTTTGGACTTTaGATCAGGCACTTAAATTGC | + |
|
Preference number: 2 (lower is better) Translates to: LPLQEIRCYSVKVQGLIYLRFGL*IRHLNC Trigger: GCAATTTAAGTGCCTGATTCAAAGTCCAAAGCGTAA...ATAAATCAGGCCTTGTACTTTGACAGAATAACACCTGATTTCTTGCAAAGGTAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CCA 90 bp | AGACTGTTACTTAGAAAGGCCTTCACAGTAATTCCACATTTCTACATGATAACTAAATGCCTGAGTCAGTaGACAAACTCCATGTATATG | + |
|
Preference number: 2 (lower is better) Translates to: RLLLRKAFTVIPHFYMITKCLSQ*TNSMYM Trigger: CATATACATGGAGTTTGTCCACTGACTCAGGCATTT...AGTTATCATGTAGAAATGTGGAATTACTGTGAAGGCCTTTCTAAGTAACAGTCT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CCA 90 bp | AAAACAAGGAATCTAATCTTTGTTCAAGGTGGGCTAAATGGTTTTCTGCAAATCCCTGCTTTTACCTCATaGAACACAAGAAAAAGTGAC | + |
|
Preference number: 2 (lower is better) Translates to: KTRNLIFVQGGLNGFLQIPAFTS*NTRKSD Trigger: GTCACTTTTTCTTGTGTTCCATGAGGTAAAAGCAGG...GATTTGCAGAAAACCATTTAGCCCACCTTGAACAAAGATTAGATTCCTTGTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR GCA 72 bp | TGGAGACCAAACCCAGAGCCTTGCACGTGCCCCGTGTaGTTTGTCACCGAGCTGCACCCAGCCCCTACCCCC | + |
|
Preference number: 3 (lower is better) Translates to: WRPNPEPCTCPV*FVTELHPAPTP Trigger: GGGGGTAGGGGCTGGGTGCAGCTCGGTGACAAAGCACACGGGGCACGTGCAAGGCTCTGGGTTTGGTCTCCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR GCA 72 bp | TCCGCCACCACAAGCAGAGAATCTGGGCAGTCAGGGTaGATGAGGCCCCTCCGGCTGGAGTGCAGGGCTTTC | + |
|
Preference number: 3 (lower is better) Translates to: SATTSRESGQSG*MRPLRLECRAF Trigger: GAAAGCCCTGCACTCCAGCCGGAGGGGCCTCATGCACCCTGACTGCCCAGATTCTCTGCTTGTGGTGGCGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR GCA 72 bp | CCTCCTAGGGCCCAGCCATCTGCTGTGGGAGTTGCCTaGCACAATGGGGACCCTGCAACCGTGAGAAAAACC | + |
|
Preference number: 3 (lower is better) Translates to: PPRAQPSAVGVA*HNGDPATVRKT Trigger: GGTTTTTCTCACGGTTGCAGGGTCCCCATTGTGGCAGGCAACTCCCACAGCAGATGGCTGGGCCCTAGGAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR TCA 72 bp | AGCACAGCCTCCTGCTGGCTTCCCGCTATCAGCCAGTaGAAGGGACAGGCAGGGCTCACTCAGGGAAGTACT | + |
|
Preference number: 3 (lower is better) Translates to: STASCWLPAISQ*KGQAGLTQGST Trigger: AGTACTTCCCTGAGTGAGCCCTGCCTGTCCCTTTCACTGGCTGATAGCGGGAAGCCAGCAGGAGGCTGTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR TCA 72 bp | AGAGACCTGGAATACTGTCAGGGCCTGGCACTGTGGTaGCAGCCATCTTTCACCACCACCGGAGCTCCCGCA | + |
|
Preference number: 3 (lower is better) Translates to: RDLEYCQGLALW*QPSFTTTGAPA Trigger: TGCGGGAGCTCCGGTGGTGGTGAAAGATGGCTGTCACCACAGTGCCAGGCCCTGACAGTATTCCAGGTCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR GCA 72 bp | TGGCTGTTACAGTGCTGGAGACCAAACCCAGAGCCTTaGACGTGCCCCGTGTGCTTTGTCACCGAGCTGCAC | + |
|
Preference number: 3 (lower is better) Translates to: WLLQCWRPNPEP*TCPVCFVTELH Trigger: GTGCAGCTCGGTGACAAAGCACACGGGGCACGTGCAAGGCTCTGGGTTTGGTCTCCAGCACTGTAACAGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CCA 72 bp | GGCCCAGCCATCTGCTGTGGGAGTTGCCTGCCACAATaGGGACCCTGCAACCGTGAGAAAAACCTGGTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: GPAICCGSCLPQ*GPCNREKNLVC Trigger: ACAGACCAGGTTTTTCTCACGGTTGCAGGGTCCCCATTGTGGCAGGCAACTCCCACAGCAGATGGCTGGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CCA 72 bp | TTTCTGATACTCCTCCTAGGGCCCAGCCATCTGCTGTaGGAGTTGCCTGCCACAATGGGGACCCTGCAACCG | + |
|
Preference number: 3 (lower is better) Translates to: FLILLLGPSHLL*ELPATMGTLQP Trigger: CGGTTGCAGGGTCCCCATTGTGGCAGGCAACTCCCACAGCAGATGGCTGGGCCCTAGGAGGAGTATCAGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CCA 72 bp | GTCACAGCCAGCCTTATCCAACGCTGGCATGGAGGGTaGGGGAGGGTTCAGAGTCTTTATAAGGTCTGGGGT | + |
|
Preference number: 3 (lower is better) Translates to: VTASLIQRWHGG*GRVQSLYKVWG Trigger: ACCCCAGACCTTATAAAGACTCTGAACCCTCCCCCACCCTCCATGCCAGCGTTGGATAAGGCTGGCTGTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CCA 72 bp | TGGTCTAATGACGGCGTTCAGAAGCAAAGTGGAGGGTaGGTGTGGGTGGAACCTCCATCCATCTTTCAGTGC | + |
|
Preference number: 3 (lower is better) Translates to: WSNDGVQKQSGG*VWVEPPSIFQC Trigger: GCACTGAAAGATGGATGGAGGTTCCACCCACACCCACCCTCCACTTTGCTTCTGAACGCCGTCATTAGACCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CCA 72 bp | TCTGTCACCTCTGATTCTCTAAGCTGCAGAGAGACCTaGAATACTGTCAGGGCCTGGCACTGTGGTGACAGC | + |
|
Preference number: 3 (lower is better) Translates to: SVTSDSLSCRET*NTVRAWHCGDS Trigger: GCTGTCACCACAGTGCCAGGCCCTGACAGTATTCCAGGTCTCTCTGCAGCTTAGAGAATCAGAGGTGACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR TCA 72 bp | AGGGCTCACTCAGGGAAGTACTCAGGTCAGATAAAGTaGCAACACCTCCAGACCCTGGCTCCTCATATCAGC | + |
|
Preference number: 3 (lower is better) Translates to: RAHSGKYSGQIK*QHLQTLAPHIS Trigger: GCTGATATGAGGAGCCAGGGTCTGGAGGTGTTGTCACTTTATCTGACCTGAGTACTTCCCTGAGTGAGCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR GCA 72 bp | GGGCAGTCAGGGTGCATGAGGCCCCTCCGGCTGGAGTaGAGGGCTTTCTTTTTCTTTCTTTCTTTCTTTCTT | + |
|
Preference number: 3 (lower is better) Translates to: GQSGCMRPLRLE*RAFFFFLSFFL Trigger: AAGAAAGAAAGAAAGAAAGAAAAAGAAAGCCCTGCACTCCAGCCGGAGGGGCCTCATGCACCCTGACTGCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CCA 72 bp | CAACACAGGGCCACACTGCAGCGAAGACTCAATCAGTaGCTACAGCAGAACTTGGACTTGATGCCTTCTCTG | + |
|
Preference number: 3 (lower is better) Translates to: QHRATLQRRLNQ*LQQNLDLMPSL Trigger: CAGAGAAGGCATCAAGTCCAAGTTCTGCTGTAGCCACTGATTGAGTCTTCGCTGCAGTGTGGCCCTGTGTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CCA 72 bp | TGCCACAATGGGGACCCTGCAACCGTGAGAAAAACCTaGTCTGTCACCTCTGATTCTCTAAGCTGCAGAGAG | + |
|
Preference number: 3 (lower is better) Translates to: CHNGDPATVRKT*SVTSDSLSCRE Trigger: CTCTCTGCAGCTTAGAGAATCAGAGGTGACAGACCAGGTTTTTCTCACGGTTGCAGGGTCCCCATTGTGGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CAA 90 bp | GGAAGGCTGCTCCCCATAGCACAGACATCAGAATCACGGAGAACGTCAGCAGTCTGCTTTGGACATTTCTaGGCTATGGTGACCATGGCA | + |
|
Preference number: 3 (lower is better) Translates to: GRLLPIAQTSESRRTSAVCFGHF*AMVTMA Trigger: TGCCATGGTCACCATAGCCAAGAAATGTCCAAAGCA...GACTGCTGACGTTCTCCGTGATTCTGATGTCTGTGCTATGGGGAGCAGCCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR GCA 72 bp | AGAAAAACCTGGTCTGTCACCTCTGATTCTCTAAGCTaGAGAGAGACCTGGAATACTGTCAGGGCCTGGCAC | + |
|
Preference number: 3 (lower is better) Translates to: RKTWSVTSDSLS*RETWNTVRAWH Trigger: GTGCCAGGCCCTGACAGTATTCCAGGTCTCTCTGCAGCTTAGAGAATCAGAGGTGACAGACCAGGTTTTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CAA 90 bp | ACTGTGACACGCCATAAAATGCTGTGTGCACAGGGCGCTGGGACACCAGCAGCAAATCAGGCACTTAAATaGCTGGAGAGACATTCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: TVTRHKMLCAQGAGTPAANQALK*LERHSE Trigger: TTCAGAATGTCTCTCCAGCAATTTAAGTGCCTGATT...TGCTGCTGGTGTCCCAGCGCCCTGTGCACACAGCATTTTATGGCGTGTCACAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR TCA 72 bp | CCCTGCAACCGTGAGAAAAACCTGGTCTGTCACCTCTaGTTCTCTAAGCTGCAGAGAGACCTGGAATACTGT | + |
|
Preference number: 3 (lower is better) Translates to: PCNREKNLVCHL*FSKLQRDLEYC Trigger: ACAGTATTCCAGGTCTCTCTGCAGCTTAGAGAATCAGAGGTGACAGACCAGGTTTTTCTCACGGTTGCAGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR GCA 72 bp | CTTTCTGAGTTTAGACACAGCTGTAAAGTGTGTAGCTaGCAGCAAATGGTACAGAGCCTCTGGGGCAGAGAC | + |
|
Preference number: 3 (lower is better) Translates to: LSEFRHSCKVCS*QQMVQSLWGRD Trigger: GTCTCTGCCCCAGAGGCTCTGTACCATTTGCTGGCAGCTACACACTTTACAGCTGTGTCTAAACTCAGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR GCA 72 bp | CTGGGGTTGGACTTCTGGGCTACTCCTGGAGCCCAATaGACCTCTTACCTTTGCAAGAAATCAGGTGTTATT | + |
|
Preference number: 3 (lower is better) Translates to: LGLDFWATPGAQ*TSYLCKKSGVI Trigger: AATAACACCTGATTTCTTGCAAAGGTAAGAGGTGCATTGGGCTCCAGGAGTAGCCCAGAAGTCCAACCCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CCA 72 bp | TTAGACACAGCTGTAAAGTGTGTAGCTGCCAGCAAATaGTACAGAGCCTCTGGGGCAGAGACCTCCAGTATA | + |
|
Preference number: 3 (lower is better) Translates to: LDTAVKCVAASK*YRASGAETSSI Trigger: TATACTGGAGGTCTCTGCCCCAGAGGCTCTGTACCATTTGCTGGCAGCTACACACTTTACAGCTGTGTCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CAA 90 bp | GGAAGGCTGCTCCCCATAGCACAGACATCAGAATCACGGAGAACGTCAGCAGTCGTTACGCTTTGGACTTaGAATCAGGCACTTAAATTG | + |
|
Preference number: 3 (lower is better) Translates to: GRLLPIAQTSESRRTSAVVTLWT*NQALKL Trigger: CAATTTAAGTGCCTGATTCAAAGTCCAAAGCGTAAC...GACTGCTGACGTTCTCCGTGATTCTGATGTCTGTGCTATGGGGAGCAGCCTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CCA 72 bp | TTTATAAGGTCTGGGGTTGGACTTCTGGGCTACTCCTaGAGCCCAATGCACCTCTTACCTTTGCAAGAAATC | + |
|
Preference number: 3 (lower is better) Translates to: FIRSGVGLLGYS*SPMHLLPLQEI Trigger: GATTTCTTGCAAAGGTAAGAGGTGCATTGGGCTCCAGGAGTAGCCCAGAAGTCCAACCCCAGACCTTATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR TCA 72 bp | TGGGTGTGGGTGGAACCTCCATCCATCTTTCAGTGCTaGCTTTCAAGATTTCTAAATGCCCTTAACCACAGC | + |
|
Preference number: 3 (lower is better) Translates to: WVWVEPPSIFQC*LSRFLNALNHS Trigger: GCTGTGGTTAAGGGCATTTAGAAATCTTGAAAGTCAGCACTGAAAGATGGATGGAGGTTCCACCCACACCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR GCA 72 bp | CGGGATCACTTTGAGGGTTTTCCAGTGCTAGCTGCCTaGTTCATAGTAGTAGTTACGACTGTACAATTCCCA | + |
|
Preference number: 3 (lower is better) Translates to: RDHFEGFPVLAA*FIVVVTTVQFP Trigger: TGGGAATTGTACAGTCGTAACTACTACTATGAAGCAGGCAGCTAGCACTGGAAAACCCTCAAAGTGATCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR TCA 72 bp | GCAAGAGAGGAAAGGAGGGTGTTACGCTTTGGACTTTaGATCAGGCACTTAAATTGCTGGAGAGACATTCTG | + |
|
Preference number: 3 (lower is better) Translates to: AREERRVLRFGL*IRHLNCWRDIL Trigger: CAGAATGTCTCTCCAGCAATTTAAGTGCCTGATTCAAAGTCCAAAGCGTAACACCCTCCTTTCCTCTCTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR TCA 72 bp | CTGGAAAGAGTGTTGAATCCAAGTTTCCTGCTAACGTaGGTCTTAGTACTCAATCTGCCCATACGGATCTGC | + |
|
Preference number: 3 (lower is better) Translates to: LERVLNPSFLLT*VLVLNLPIRIC Trigger: GCAGATCCGTATGGGCAGATTGAGTACTAAGACTCACGTTAGCAGGAAACTTGGATTCAACACTCTTTCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR TCA 72 bp | TCTGAACCAAATGTGAAACCTGGGTTGGAGTACTCATaGCATAAGTGGTCTAATGACGGCGTTCAGAAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: SEPNVKPGLEYS*HKWSNDGVQKQ Trigger: TTGCTTCTGAACGCCGTCATTAGACCACTTATGTCATGAGTACTCCAACCCAGGTTTCACATTTGGTTCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR TCA 72 bp | GCTACCACCTTCCACTGTGAGAGTAAAGCAGCATTGTaGACACACTGTGGACTTTCTAAAAGACAAACGAGA | + |
|
Preference number: 3 (lower is better) Translates to: ATTFHCESKAAL*THCGLSKRQTR Trigger: TCTCGTTTGTCTTTTAGAAAGTCCACAGTGTGTTCACAATGCTGCTTTACTCTCACAGTGGAAGGTGGTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR CCA 72 bp | ACAAACAACAAAAACCCTAACCCAGATAACCTTTCCTaGCTACTACTGGAAAGAGTGTTGAATCCAAGTTTC | + |
|
Preference number: 3 (lower is better) Translates to: TNNKNPNPDNLS*LLLERVLNPSF Trigger: GAAACTTGGATTCAACACTCTTTCCAGTAGTAGCCAGGAAAGGTTATCTGGGTTAGGGTTTTTGTTGTTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| 3UTR-3UTR CAA 90 bp | AGACTGTTACTTAGAAAGGCCTTCACAGTAATTCCACATTTCTACATGATAACTTTTCTGTGTGTGTTCTaGTGGCTGACTGGAAGGTTT | + |
|
Preference number: 3 (lower is better) Translates to: RLLLRKAFTVIPHFYMITFLCVF*WLTGRF Trigger: AAACCTTCCAGTCAGCCACAAGAACACACACAGAAA...AGTTATCATGTAGAAATGTGGAATTACTGTGAAGGCCTTTCTAAGTAACAGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| CDS-3UTR GCA 90 bp | CCAGAGCCTTGCACGTGCCCCGTGTGCTTTGTCACCGAGCTGCACCCAGCCCCTAGGTCGGGCGGCTGCTaGCGAAGCACCTCCACGGTG | + |
|
Preference number: 4 (lower is better) Translates to: PEPCTCPVCFVTELHPAPRSGGC*RSTSTV Trigger: CACCGTGGAGGTGCTTCGGCAGCAGCCGCCCGACCT...AGGGGCTGGGTGCAGCTCGGTGACAAAGCACACGGGGCACGTGCAAGGCTCTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| CDS-3UTR GCA 90 bp | CTATGCAGTAACGCTAGAAGGGAAGGAGTTCTCTGTGCAGCACAGCCTCCTGCTACGAGGTCGGGCGGCTaGTGCCGAAGCACCTCCACG | + |
|
Preference number: 4 (lower is better) Translates to: LCSNARREGVLCAAQPPATRSGG*CRSTST Trigger: CGTGGAGGTGCTTCGGCAGCAGCCGCCCGACCTCGT...AGCAGGAGGCTGTGCTGCACAGAGAACTCCTTCCCTTCTAGCGTTACTGCATAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| CDS-3UTR GCA 90 bp | CCAGAGCCTTGCACGTGCCCCGTGTGCTTTGTCACCGAGCTGCACCCAGCCCCTAGTTCTCCGAAGTACTaGCCCTTATGGCAATGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: PEPCTCPVCFVTELHPAPSSPKY*PLWQWA Trigger: TGCCCATTGCCATAAGGGGCAGTACTTCGGAGAACT...AGGGGCTGGGTGCAGCTCGGTGACAAAGCACACGGGGCACGTGCAAGGCTCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
||
| CDS-3UTR CCA 90 bp | GCACATAGCGGCTCCGCCACCACAAGCAGAGAATCTGGGCAGTCAGGGTGCATGTGCCCCTTATGGCAATaGGCAATCTCGACCTCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: AHSGSATTSRESGQSGCMCPLWQ*AISTSW Trigger: CCAGGAGGTCGAGATTGCCCATTGCCATAAGGGGCA...CATGCACCCTGACTGCCCAGATTCTCTGCTTGTGGTGGCGGAGCCGCTATGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR CCA 90 bp | CCAGAGCCTTGCACGTGCCCCGTGTGCTTTGTCACCGAGCTGCACCCAGCCCCTCCATCAGATCCAAGTTaGAGCCAAACATCTTCACCA | + |
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Preference number: 4 (lower is better) Translates to: PEPCTCPVCFVTELHPAPPSDPS*SQTSSP Trigger: TGGTGAAGATGTTTGGCTCCAACTTGGATCTGATGG...AGGGGCTGGGTGCAGCTCGGTGACAAAGCACACGGGGCACGTGCAAGGCTCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR TCA 90 bp | ACTGTGACACGCCATAAAATGCTGTGTGCACAGGGCGCTGGGACACCAGCAGCAAGATGTTCCTCTTCATaGTGTCCATGCAGGGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: TVTRHKMLCAQGAGTPAARCSSS*CPCRGP Trigger: TGGGCCCCTGCATGGACATCATGAAGAGGAACATCT...TGCTGCTGGTGTCCCAGCGCCCTGTGCACACAGCATTTTATGGCGTGTCACAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR CCA 90 bp | AGGAGCTACCTAAGGAATCTTTCTGATACTCCTCCTAGGGCCCAGCCATCTGCTTCCCCGTCGTCGCCTTaGTCAATGACATGCTCGTCA | + |
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Preference number: 4 (lower is better) Translates to: RSYLRNLSDTPPRAQPSASPSSP*SMTCSS Trigger: TGACGAGCATGTCATTGACCAAGGCGACGACGGGGA...AGCAGATGGCTGGGCCCTAGGAGGAGTATCAGAAAGATTCCTTAGGTAGCTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR TCA 90 bp | TTTGAGGGTTTTCCAGTGCTAGCTGCCTGCTTCATAGTAGTAGTTACGACTGTACCTCGCGCAGGCGTGTaGAGTACTCCACCGCGAAGT | + |
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Preference number: 4 (lower is better) Translates to: FEGFPVLAACFIVVVTTVPRAGV*STPPRS Trigger: ACTTCGCGGTGGAGTACTTCACACGCCTGCGCGAGG...TACAGTCGTAACTACTACTATGAAGCAGGCAGCTAGCACTGGAAAACCCTCAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR CCA 90 bp | CTATGCAGTAACGCTAGAAGGGAAGGAGTTCTCTGTGCAGCACAGCCTCCTGCTAAGTACTGCCCCTTATaGCAATGGGCAATCTCGACC | + |
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Preference number: 4 (lower is better) Translates to: LCSNARREGVLCAAQPPAKYCPL*QWAIST Trigger: GGTCGAGATTGCCCATTGCCATAAGGGGCAGTACTT...AGCAGGAGGCTGTGCTGCACAGAGAACTCCTTCCCTTCTAGCGTTACTGCATAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR TCA 90 bp | ACTGTGACACGCCATAAAATGCTGTGTGCACAGGGCGCTGGGACACCAGCAGCACCCTCCATTCTTGTTTaGCTTGGTCTTGCTTCTAAT | + |
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Preference number: 4 (lower is better) Translates to: TVTRHKMLCAQGAGTPAAPSILV*LGLASN Trigger: ATTAGAAGCAAGACCAAGTCAAACAAGAATGGAGGG...TGCTGCTGGTGTCCCAGCGCCCTGTGCACACAGCATTTTATGGCGTGTCACAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR TCA 90 bp | TTTGAGGGTTTTCCAGTGCTAGCTGCCTGCTTCATAGTAGTAGTTACGACTGTACCAAAGGGAGCCTTCTaGGGTGGCGATGATGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: FEGFPVLAACFIVVVTTVPKGAF*GGDDGS Trigger: GCTACCATCATCGCCACCTCAGAAGGCTCCCTTTGG...TACAGTCGTAACTACTACTATGAAGCAGGCAGCTAGCACTGGAAAACCCTCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR GCA 90 bp | CTATGCAGTAACGCTAGAAGGGAAGGAGTTCTCTGTGCAGCACAGCCTCCTGCTCTAGTTCTCCAAAACTaGCACGGTTGTCATACTGAC | + |
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Preference number: 4 (lower is better) Translates to: LCSNARREGVLCAAQPPALVLQN*HGCHTD Trigger: GTCAGTATGACAACCGTGGCAGTTTTGGAGAACTAG...AGCAGGAGGCTGTGCTGCACAGAGAACTCCTTCCCTTCTAGCGTTACTGCATAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR CCA 90 bp | TCTGCTGGGCCTCTTTCTGAGTTTAGACACAGCTGTAAAGTGTGTAGCTGCCAGTCTGCTCATCAGTTTTaGGATGAACCACCCTTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SAGPLSEFRHSCKVCSCQSAHQF*DEPPLD Trigger: ATCCAAGGGTGGTTCATCCCAAAACTGATGAGCAGA...CTGGCAGCTACACACTTTACAGCTGTGTCTAAACTCAGAAAGAGGCCCAGCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CAA 72 bp | AGCAAGAGAGGAAAGGAGGGTGTTACGCTTTGGACTTaGAATCAGGCACTTAAATTGCTGGAGAGACATTCT | + |
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Preference number: 4 (lower is better) Translates to: SKRGKEGVTLWT*NQALKLLERHS Trigger: AGAATGTCTCTCCAGCAATTTAAGTGCCTGATTCAAAGTCCAAAGCGTAACACCCTCCTTTCCTCTCTTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR TCA 90 bp | AGGAAAATTCGGGATCACTTTGAGGGTTTTCCAGTGCTAGCTGCCTGCTTCATAAGCCTCTCAAATGCTTaGACATCCATAACTAAGCAT | + |
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Preference number: 4 (lower is better) Translates to: RKIRDHFEGFPVLAACFISLSNA*TSITKH Trigger: ATGCTTAGTTATGGATGTTCAAGCATTTGAGAGGCT...TATGAAGCAGGCAGCTAGCACTGGAAAACCCTCAAAGTGATCCCGAATTTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR TCA 90 bp | TTTGAGGGTTTTCCAGTGCTAGCTGCCTGCTTCATAGTAGTAGTTACGACTGTACTGTTCTTCGTAATGTaGGATGTTCCTCTTCATGAT | + |
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Preference number: 4 (lower is better) Translates to: FEGFPVLAACFIVVVTTVLFFVM*DVPLHD Trigger: ATCATGAAGAGGAACATCTCACATTACGAAGAACAG...TACAGTCGTAACTACTACTATGAAGCAGGCAGCTAGCACTGGAAAACCCTCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| 3UTR CAA 72 bp | GGTGTTACGCTTTGGACTTTGAATCAGGCACTTAAATaGCTGGAGAGACATTCTGAACCAAATGTGAAACCT | + |
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Preference number: 4 (lower is better) Translates to: GVTLWTLNQALK*LERHSEPNVKP Trigger: AGGTTTCACATTTGGTTCAGAATGTCTCTCCAGCAATTTAAGTGCCTGATTCAAAGTCCAAAGCGTAACACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR TCA 90 bp | AGACTGTTACTTAGAAAGGCCTTCACAGTAATTCCACATTTCTACATGATAACTTCTTTACAAGCTTCCTaGAGCCGGCATCTCTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: RLLLRKAFTVIPHFYMITSLQAS*SRHLCS Trigger: TGAGCAGAGATGCCGGCTTCAGGAAGCTTGTAAAGA...AGTTATCATGTAGAAATGTGGAATTACTGTGAAGGCCTTTCTAAGTAACAGTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR GCA 90 bp | AGACTGTTACTTAGAAAGGCCTTCACAGTAATTCCACATTTCTACATGATAACTCCTTGGTCAATGACATaGTCGTCAGTTTTGACAATC | + |
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Preference number: 4 (lower is better) Translates to: RLLLRKAFTVIPHFYMITPWSMT*SSVLTI Trigger: GATTGTCAAAACTGACGAGCATGTCATTGACCAAGG...AGTTATCATGTAGAAATGTGGAATTACTGTGAAGGCCTTTCTAAGTAACAGTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS TCA 90 bp | GGACTCCTGCGTGTGAAAGGTCGTCGGGGAGACGATGAACGTGTCTaGTTCCTGGCGGCGGGCCTCGCGCAGGCGTGTGAAGTACTCCAC | + |
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Preference number: 5 (lower is better) Translates to: GLLRVKGRRGDDERV*FLAAGLAQACEVLH Trigger: GTGGAGTACTTCACACGCCTGCGCGAGGCCCGCCGCCAGGAATCAGACACGTTCATCGTCTCCCCGACGACCTTTCACACGCAGGAGTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035220.12 ENSMUST00000195405.6 |
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| CDS-3UTR CAA 90 bp | CCAGAGCCTTGCACGTGCCCCGTGTGCTTTGTCACCGAGCTGCACCCAGCCCCTCATGGCATCCAGAACTaGAGAAAGCTGTTCCTGATC | + |
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Preference number: 5 (lower is better) Translates to: PEPCTCPVCFVTELHPAPHGIQN*RKLFLI Trigger: GATCAGGAACAGCTTTCTCAAGTTCTGGATGCCATG...AGGGGCTGGGTGCAGCTCGGTGACAAAGCACACGGGGCACGTGCAAGGCTCTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR CAA 90 bp | GGAGGAGGGAGGGAAAGGCGCACCCTCAGAAGAGAGGAGCTACCTAAGGAATCTACTCGTCTAGTAAATTaGCTAGGAACCGGAACTTCC | + |
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Preference number: 5 (lower is better) Translates to: GGGRERRTLRREELPKESTRLVN*LGTGTS Trigger: GGAAGTTCCGGTTCCTAGCAAATTTACTAGACGAGT...AGATTCCTTAGGTAGCTCCTCTCTTCTGAGGGTGCGCCTTTCCCTCCCTCCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS CCA 90 bp | TCTCCGAAGTACTGCCCCTTATGGCAATGGGCAATCTCGACCTCCTaGTTCCCTCCATTCTTGTTTGACTTGGTCTGTGCGATTATTCGC | + |
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Preference number: 5 (lower is better) Translates to: SPKYCPLWQWAISTS*FPPFLFDLVCAIIR Trigger: GCGAATAATCGCACAGACCAAGTCAAACAAGAATGGAGGGAACCAGGAGGTCGAGATTGCCCATTGCCATAAGGGGCAGTACTTCGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195405.6 |
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| CDS-3UTR CAA 90 bp | TTTGAGGGTTTTCCAGTGCTAGCTGCCTGCTTCATAGTAGTAGTTACGACTGTAGTCCCCGTCGTCGCCTaGGTCAATGACATGCTCGTC | + |
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Preference number: 5 (lower is better) Translates to: FEGFPVLAACFIVVVTTVVPVVA*VNDMLV Trigger: GACGAGCATGTCATTGACCAAGGCGACGACGGGGAC...TACAGTCGTAACTACTACTATGAAGCAGGCAGCTAGCACTGGAAAACCCTCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR CAA 90 bp | CAGGTGTCTGCAGACCTTAGAACTTTCAGAAGCAACGTTAGCAGCAAGAGAGGAGCAGCTCTGGGTTTGTaGGTGACCAGGGCAAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: QVSADLRTFRSNVSSKRGAALGL*VTRASS Trigger: AGAACTTGCCCTGGTCACCAACAAACCCAGAGCTGC...TCCTCTCTTGCTGCTAACGTTGCTTCTGAAAGTTCTAAGGTCTGCAGACACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR CAA 90 bp | ACTGTGACACGCCATAAAATGCTGTGTGCACAGGGCGCTGGGACACCAGCAGCACCATTCTTGTTTGACTaGGTCTTGCTTCTAATCAAG | + |
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Preference number: 5 (lower is better) Translates to: TVTRHKMLCAQGAGTPAAPFLFD*VLLLIK Trigger: CTTGATTAGAAGCAAGACCAAGTCAAACAAGAATGG...TGCTGCTGGTGTCCCAGCGCCCTGTGCACACAGCATTTTATGGCGTGTCACAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS CCA 90 bp | TCTCCGAAGTACTGCCCCTTATGGCAATGGGCAATCTCGACCTCCTaGTTCCCTCCATTCTTGTTTGACTTGGTCTTGCTTCTAATCAAG | + |
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Preference number: 5 (lower is better) Translates to: SPKYCPLWQWAISTS*FPPFLFDLVLLLIK Trigger: CTTGATTAGAAGCAAGACCAAGTCAAACAAGAATGGAGGGAACCAGGAGGTCGAGATTGCCCATTGCCATAAGGGGCAGTACTTCGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR CAA 90 bp | CAGGTGTCTGCAGACCTTAGAACTTTCAGAAGCAACGTTAGCAGCAAGAGAGGATTGTTTGACTTGGTCTaGCTTCTAATCAAGATGCTC | + |
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Preference number: 5 (lower is better) Translates to: QVSADLRTFRSNVSSKRGLFDLV*LLIKML Trigger: GAGCATCTTGATTAGAAGCAAGACCAAGTCAAACAA...TCCTCTCTTGCTGCTAACGTTGCTTCTGAAAGTTCTAAGGTCTGCAGACACCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS-3UTR CAA 90 bp | AAAACAAGGAATCTAATCTTTGTTCAAGGTGGGCTAAATGGTTTTCTGCAAATCGCAGCTCTCGGGGTATaGTACATCAGAGCTAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: KTRNLIFVQGGLNGFLQIAALGV*YIRASS Trigger: AGAACTAGCTCTGATGTACAATACCCCGAGAGCTGC...GATTTGCAGAAAACCATTTAGCCCACCTTGAACAAAGATTAGATTCCTTGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS TCA 72 bp | TGTCTGATTCCTGGCGGCGGGCCTCGCGCAGGCGTGTaGAGTACTCCACCGCGAAGTCGACGAGGTCGGGCG | + |
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Preference number: 6 (lower is better) Translates to: CLIPGGGPRAGV*STPPRSRRGRA Trigger: CGCCCGACCTCGTCGACTTCGCGGTGGAGTACTTCACACGCCTGCGCGAGGCCCGCCGCCAGGAATCAGACA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035220.12 ENSMUST00000195405.6 |
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| CDS TCA 72 bp | CGTGTGAAAGGTCGTCGGGGAGACGATGAACGTGTCTaGTTCCTGGCGGCGGGCCTCGCGCAGGCGTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: RVKGRRGDDERV*FLAAGLAQACE Trigger: TTCACACGCCTGCGCGAGGCCCGCCGCCAGGAATCAGACACGTTCATCGTCTCCCCGACGACCTTTCACACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035220.12 ENSMUST00000195405.6 |
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| CDS TCA 72 bp | CTTCCGAGTCCGAGTCACTCTCCCCGTCCTCCTCGATaGCGGGGACTGCGCTGGACTCCTGCGTGTGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: LPSPSHSPRPPR*RGLRWTPACER Trigger: CCTTTCACACGCAGGAGTCCAGCGCAGTCCCCGTCATCGAGGAGGACGGGGAGAGTGACTCGGACTCGGAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035220.12 ENSMUST00000195405.6 |
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| CDS CCA 72 bp | AAGGTCGTCGGGGAGACGATGAACGTGTCTGATTCCTaGCGGCGGGCCTCGCGCAGGCGTGTGAAGTACTCC | + |
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Preference number: 6 (lower is better) Translates to: KVVGETMNVSDS*RRASRRRVKYS Trigger: GGAGTACTTCACACGCCTGCGCGAGGCCCGCCGCCAGGAATCAGACACGTTCATCGTCTCCCCGACGACCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035220.12 ENSMUST00000195405.6 |
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| CDS CAA 90 bp | AGGGAGCCTTCTGAGGTGGCGATGATGGTAGCAGCTCTCGGGGTATaGTACATCAGAGCTAGTTCTCCAAAACTGCCACGGTTGTCATAC | + |
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Preference number: 6 (lower is better) Translates to: REPSEVAMMVAALGV*YIRASSPKLPRLSY Trigger: GTATGACAACCGTGGCAGTTTTGGAGAACTAGCTCTGATGTACAATACCCCGAGAGCTGCTACCATCATCGCCACCTCAGAAGGCTCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035220.12 ENSMUST00000192068.2 ENSMUST00000195405.6 |
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| CDS CAA 72 bp | CAATGGGCAATCTCGACCTCCTGGTTCCCTCCATTCTaGTTTGACTTGGTCTGTGCGATTATTCGCTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: QWAISTSWFPPF*FDLVCAIIRSP Trigger: CGGAGAGCGAATAATCGCACAGACCAAGTCAAACAAGAATGGAGGGAACCAGGAGGTCGAGATTGCCCATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195405.6 |
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| CDS TCA 72 bp | GGAGCCAAACATCTTCACCAGCTGTTCTTCGTAATGTaGGATGTTCCTCTTCATGATGTCCATGCAGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: GAKHLHQLFFVM*DVPLHDVHAGA Trigger: GGCCCCTGCATGGACATCATGAAGAGGAACATCTCACATTACGAAGAACAGCTGGTGAAGATGTTTGGCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035220.12 ENSMUST00000195405.6 |
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| CDS CCA 72 bp | AAGCTTCCTGAAGCCGGCATCTCTGCTCATCAGTTTTaGGATGAACCACCCTTGGATCGTTATCCTCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: KLPEAGISAHQF*DEPPLDRYPPL Trigger: AAGAGGAGGATAACGATCCAAGGGTGGTTCATCCCAAAACTGATGAGCAGAGATGCCGGCTTCAGGAAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000035220.12 ENSMUST00000192068.2 ENSMUST00000192344.2 ENSMUST00000195405.6 |
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| CDS CAA 90 bp | TCAGGGTTAAACGTTTCTGCACAGACTGATACTCGTCTAGTAAATTaGCTAGGAACCGGAACTTCCAGATCGGCATCTTCCGAGTCCGAG | + |
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Preference number: 6 (lower is better) Translates to: SGLNVSAQTDTRLVN*LGTGTSRSASSESE Trigger: CTCGGACTCGGAAGATGCCGATCTGGAAGTTCCGGTTCCTAGCAAATTTACTAGACGAGTATCAGTCTGTGCAGAAACGTTTAACCCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035220.12 ENSMUST00000195405.6 |
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| CDS CAA 72 bp | CAATGGGCAATCTCGACCTCCTGGTTCCCTCCATTCTaGTTTGACTTGGTCTTGCTTCTAATCAAGATGCTC | + |
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Preference number: 6 (lower is better) Translates to: QWAISTSWFPPF*FDLVLLLIKML Trigger: GAGCATCTTGATTAGAAGCAAGACCAAGTCAAACAAGAATGGAGGGAACCAGGAGGTCGAGATTGCCCATTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035220.12 |
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| CDS CAA 72 bp | AACGTTTCTGCACAGACTGATACTCGTCTAGTAAATTaGCTAGGAACCGGAACTTCCAGATCGGCATCTTCC | + |
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Preference number: 6 (lower is better) Translates to: NVSAQTDTRLVN*LGTGTSRSASS Trigger: GGAAGATGCCGATCTGGAAGTTCCGGTTCCTAGCAAATTTACTAGACGAGTATCAGTCTGTGCAGAAACGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035220.12 ENSMUST00000195405.6 |
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