RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRKAG2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028944

Ensembl transcript IDs: ENSMUST00000030784.14, ENSMUST00000076306.12, ENSMUST00000114975.8, ENSMUST00000131486.2, ENSMUST00000150135.8

Found 225 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCGTaGGGCAGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGT +
Preference number: 1 (lower is better)
Translates to: CSHLGWVSLQQHFGA*GSGGDILRLDIRHR
Trigger: ACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCTGCCGCACGCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR CAA 90 bp CAGCAGCACTTTGGGGCGTGCGGCAGCGGCGGTGACATATTGCGTTaGGACATAAGGCACCGTGATCTGGACGTGCCGTTCACTCACTTT +
Preference number: 2 (lower is better)
Translates to: QQHFGACGSGGDILR*DIRHRDLDVPFTHF
Trigger: AAAGTGAGTGAACGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCTGCCGCACGCCCCAAAGTGCTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR CAA 90 bp TCTCTTCAGCAGCACTTTGGGGCGTGCGGCAGCGGCGGTGACATATaGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGTTCACT +
Preference number: 2 (lower is better)
Translates to: SLQQHFGACGSGGDI*RLDIRHRDLDVPFT
Trigger: AGTGAACGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCTGCCGCACGCCCCAAAGTGCTGCTGAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR CCA 90 bp GGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCCCCATCGCTAAACCCTaGTATACATTCTTAGCCATT +
Preference number: 2 (lower is better)
Translates to: GLKMLTLGLGVSSAALWGPIAKP*YTFLAI
Trigger: AATGGCTAAGAATGTATACCAGGGTTTAGCGATGGG...GCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR CCA 90 bp AGAGACTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCACCCATCGCTAAACCCTaGTATACATTCTTAGCCATT +
Preference number: 2 (lower is better)
Translates to: RDWVKGLKMLTLGLGVSSPIAKP*YTFLAI
Trigger: AATGGCTAAGAATGTATACCAGGGTTTAGCGATGGG...TGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAGTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR GCA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTATTGTTCAAGTTCTCCTaGGCGGGCGTCTACATTCAC +
Preference number: 2 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLLFKFS*AGVYIH
Trigger: GTGAATGTAGACGCCCGCGCAGGAGAACTTGAACAA...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR GCA 90 bp ACTTTCTGTCACCTGTTCCATCCCAGTGACTTCTTTGAAATGAAAAGTAGTACTTTGTTCAAGTTCTCCTaGGCGGGCGTCTACATTCAC +
Preference number: 2 (lower is better)
Translates to: TFCHLFHPSDFFEMKSSTLFKFS*AGVYIH
Trigger: GTGAATGTAGACGCCCGCGCAGGAGAACTTGAACAA...AGTACTACTTTTCATTTCAAAGAAGTCACTGGGATGGAACAGGTGACAGAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR TCA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACTTTCAACCAATTAAGTaGAAAGGAAGAGACTGGGTA +
Preference number: 2 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNFQPIK*KGRDWV
Trigger: TACCCAGTCTCTTCCTTTTCACTTAATTGGTTGAAA...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR CCA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACCCCATCGCTAAACCCTaGTATACATTCTTAGCCATT +
Preference number: 2 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDPIAKP*YTFLAI
Trigger: AATGGCTAAGAATGTATACCAGGGTTTAGCGATGGG...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR TCA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACAGAGATTTTCCACTTaGGAGAACAATCAAGGTTTT +
Preference number: 2 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLQRFST*ENNQGF
Trigger: AAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCTG...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR TCA 90 bp GACAATACTGTTTTATGTGTCACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCCAGAGATTTTCCACTTaGGAGAACAATCAAGGTTTT +
Preference number: 2 (lower is better)
Translates to: DNTVLCVTIKVTSVLSAVQRFST*ENNQGF
Trigger: AAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCTG...GACCGCTGACAAGACGCTTGTAACTTTTATTGTGACACATAAAACAGTATTGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR CAA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGCGTGACCCCGAGACTTaGTTCAAGTTCTCCTGCGCG +
Preference number: 3 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPRDPET*FKFSCA
Trigger: CGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACG...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR GCA 72 bp TTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCGTaGGGCAGCGGCGGTGACATATTGCGTTTGGACATA +
Preference number: 3 (lower is better)
Translates to: LGWVSLQQHFGA*GSGGDILRLDI
Trigger: TATGTCCAAACGCAATATGTCACCGCCGCTGCCGCACGCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR CCA 72 bp AAGAGACTGGGTAAAAGGTCTGAAGATGCTCACACTTaGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCGT +
Preference number: 3 (lower is better)
Translates to: KRLGKRSEDAHT*AGCLFSSTLGR
Trigger: ACGCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAGTCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR CAA 90 bp AGAGACTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCATTTTACTCTCTTCTATaGCAGCCAGTGTTCATGAGG +
Preference number: 3 (lower is better)
Translates to: RDWVKGLKMLTLGLGVSSFYSLL*QPVFMR
Trigger: CCTCATGAACACTGGCTGCAATAGAAGAGAGTAAAA...TGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAGTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR CAA 90 bp AAGACGTCTTCCGTTACTTCTTCCCTGCGACCACAGCCTGTTTTCATAAACGTTGGTGACATATTGCGTTaGGACATAAGGCACCGTGAT +
Preference number: 3 (lower is better)
Translates to: KTSSVTSSLRPQPVFINVGDILR*DIRHRD
Trigger: ATCACGGTGCCTTATGTCCAAACGCAATATGTCACC...AACGTTTATGAAAACAGGCTGTGGTCGCAGGGAAGAAGTAACGGAAGACGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR CAA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACCGTGACCCCGAGACTTaGTTCAAGTTCTCCTGCGCG +
Preference number: 3 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDRDPET*FKFSCA
Trigger: CGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACG...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR CAA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGAGCGGCGGTGACATATaGCGTTTGGACATAAGGCAC +
Preference number: 3 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTSGGDI*RLDIRH
Trigger: GTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR-3UTR CAA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTATTTTACTCTCTTCTATaGCAGCCAGTGTTCATGAGG +
Preference number: 3 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLFYSLL*QPVFMR
Trigger: CCTCATGAACACTGGCTGCAATAGAAGAGAGTAAAA...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp CATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGCGTCCCAGCTTCTCCAGCATaGCGGCTTCCGCGGGTCCCG +
Preference number: 4 (lower is better)
Translates to: HEANRDPETLFKFSCAGVPASPA*RLPRVP
Trigger: CGGGACCCGCGGAAGCCGGCATGCTGGAGAAGCTGG...GACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp GGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCCAGCGGAGGTCGCGCTaGGCTCTGAAAGGCCAGGCA +
Preference number: 4 (lower is better)
Translates to: GLKMLTLGLGVSSAALWGQRRSR*ALKGQA
Trigger: TGCCTGGCCTTTCAGAGCCCAGCGCGACCTCCGCTG...GCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
3UTR CAA 72 bp GCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTaGGGGCGTGCGGCAGCGGCGGTGACATATTGCGTT +
Preference number: 4 (lower is better)
Translates to: AHTWAGCLFSST*GRAAAAVTYCV
Trigger: AACGCAATATGTCACCGCCGCTGCCGCACGCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGTACTGCGAGCGGTGCTaGAGGGCCTGGGTCACTGTG +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPYCERC*RAWVTV
Trigger: CACAGTGACCCAGGCCCTGCAGCACCGCTCGCAGTA...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp GGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCTACTGCGAGCGGTGCTaGAGGGCCTGGGTCACTGTG +
Preference number: 4 (lower is better)
Translates to: GLKMLTLGLGVSSAALWGYCERC*RAWVTV
Trigger: CACAGTGACCCAGGCCCTGCAGCACCGCTCGCAGTA...GCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR CAA 72 bp TTTGGGGCGTGCGGCAGCGGCGGTGACATATTGCGTTaGGACATAAGGCACCGTGATCTGGACGTGCCGTTC +
Preference number: 4 (lower is better)
Translates to: FGACGSGGDILR*DIRHRDLDVPF
Trigger: GAACGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCTGCCGCACGCCCCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR CAA 72 bp CAGCACTTTGGGGCGTGCGGCAGCGGCGGTGACATATaGCGTTTGGACATAAGGCACCGTGATCTGGACGTG +
Preference number: 4 (lower is better)
Translates to: QHFGACGSGGDI*RLDIRHRDLDV
Trigger: CACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCTGCCGCACGCCCCAAAGTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGTGGCACCTGCTGGTGTaGGGATCAGGGCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPWHLLV*GSGLAG
Trigger: TCCTGCAAGCCCTGATCCTCACACCAGCAGGTGCCA...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp GGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCGCGCTGCCCAGTGTCTaGAGGGGACGAGGAAGCATA +
Preference number: 4 (lower is better)
Translates to: GLKMLTLGLGVSSAALWGALPSV*RGRGSI
Trigger: TATGCTTCCTCGTCCCCTCCAGACACTGGGCAGCGC...GCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR TCA 90 bp AGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGAGGGGCTGCCTGAGCTaGAGGGACTGTCCACCTTCC +
Preference number: 4 (lower is better)
Translates to: SVHEANRDPETLFKFSCARGCLS*RDCPPS
Trigger: GGAAGGTGGACAGTCCCTTCAGCTCAGGCAGCCCCT...CGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR TCA 90 bp GGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCCACTTGGGTGGGTGTTaGCGGAGAAGAGGAGACGCT +
Preference number: 4 (lower is better)
Translates to: GLKMLTLGLGVSSAALWGHLGGC*RRRGDA
Trigger: AGCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTG...GCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR GCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCACCAGCTTCTCCAGCATaGCGGCTTCCGCGGGTCCCG +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSPASPA*RLPRVP
Trigger: CGGGACCCGCGGAAGCCGGCATGCTGGAGAAGCTGG...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp CATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGCGTCGCTTGGTCACTTGGGTaGGTGTTGACGGAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: HEANRDPETLFKFSCAGVAWSLG*VLTEKR
Trigger: CCTCTTCTCCGTCAACACCCACCCAAGTGACCAAGC...GACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR GCA 90 bp GGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCAGGGGAAATGGGTGCTaGTTGGTCACTTGGGTGGGT +
Preference number: 4 (lower is better)
Translates to: GLKMLTLGLGVSSAALWGRGNGC*LVTWVG
Trigger: ACCCACCCAAGTGACCAAGCAGCACCCATTTCCCCT...GCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR GCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGCTTCTGTTTGGCACCTaGTGGTGTGAGGATCAGGGC +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPLLFGT*WCEDQG
Trigger: GCCCTGATCCTCACACCAGCAGGTGCCAAACAGAAG...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGTGCTCCCGCCCGGGCTaGAAACCTCTTTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPCSRPG*KPLSSS
Trigger: AGAAGAAGAAAGAGGTTTCCAGCCCGGGCGGGAGCA...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAGGGGCTGGGGGCCTCTaGAGAAGAGTCCTCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSGAGGL*RRVLWR
Trigger: CCTCCAGAGGACTCTTCTCCAGAGGCCCCCAGCCCC...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGGCTTGGTCACTTGGGTaGGTGTTGACGGAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPAWSLG*VLTEKR
Trigger: CCTCTTCTCCGTCAACACCCACCCAAGTGACCAAGC...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp CATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGCGTCGAAATGGGTGCTGCTTaGTCACTTGGGTGGGTGTTG +
Preference number: 4 (lower is better)
Translates to: HEANRDPETLFKFSCAGVEMGAA*SLGWVL
Trigger: CAACACCCACCCAAGTGACCAAGCAGCACCCATTTC...GACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGATAGATGCGGCTCTCTaGGCGTTCAGGCTCCTGCTT +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPIDAAL*AFRLLL
Trigger: AAGCAGGAGCCTGAACGCCCAGAGAGCCGCATCTAT...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp AGAGACTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCACAGCGGAGGTCGCGCTaGGCTCTGAAAGGCCAGGCA +
Preference number: 4 (lower is better)
Translates to: RDWVKGLKMLTLGLGVSSQRRSR*ALKGQA
Trigger: TGCCTGGCCTTTCAGAGCCCAGCGCGACCTCCGCTG...TGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAGTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp ATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGCGTCTCTGTTTGGCACCTGCTaGTGTGAGGATCAGGGCTTG +
Preference number: 4 (lower is better)
Translates to: MRQTVTPRLCSSSPARASLFGTC*CEDQGL
Trigger: CAAGCCCTGATCCTCACACCAGCAGGTGCCAAACAG...AGACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp ATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGCGTCTCGAAGACTCTTTGGATaGGGAGCGGAAGATCCCACT +
Preference number: 4 (lower is better)
Translates to: MRQTVTPRLCSSSPARASRRLFG*GAEDPT
Trigger: AGTGGGATCTTCCGCTCCTCATCCAAAGAGTCTTCG...AGACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR TCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGGGGCCTGGGTCACTGTaGTGTCCAAGTTATTGTACG +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPGPGSL*CPSYCT
Trigger: CGTACAATAACTTGGACATCACAGTGACCCAGGCCC...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGGGCTTGCAGGATGTCTaGCAGGGAGATAATACCCAC +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPGLQDV*QGDNTH
Trigger: GTGGGTATTATCTCCCTGTCAGACATCCTGCAAGCC...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp CTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCAAATACTGCGAGCGGTaGTGCAGGGCCTGGGTCACT +
Preference number: 4 (lower is better)
Translates to: LGKRSEDAHTWAGCLFSSKYCER*CRAWVT
Trigger: AGTGACCCAGGCCCTGCAGCACCGCTCGCAGTATTT...GCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
3UTR CAA 72 bp GCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTaGTTCAAGTTCTCCTGCGCGGGCGTCTACATTCAC +
Preference number: 4 (lower is better)
Translates to: ASVHEANRDPET*FKFSCAGVYIH
Trigger: GTGAATGTAGACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGCGGAAGATCCCACTaGAGCTCATCCGGCGTGGAG +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSSGRSH*SSSGVE
Trigger: CTCCACGCCGGATGAGCTTCAGTGGGATCTTCCGCT...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CCA 90 bp CTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCCTGCACGGACTCCGTTaGCTACCAAGGCAAAGAAGG +
Preference number: 4 (lower is better)
Translates to: LGKRSEDAHTWAGCLFSSLHGLR*LPRQRR
Trigger: CCTTCTTTGCCTTGGTAGCCAACGGAGTCCGTGCAG...GCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCACACTTGGGTGGGTGTTaGCGGAGAAGAGGAGACGCT +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSHLGGC*RRRGDA
Trigger: AGCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTG...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR TCA 90 bp CATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGCGTCATAAACGCCACTTTCTaGGTCTTCTTCCTCCTGGAA +
Preference number: 4 (lower is better)
Translates to: HEANRDPETLFKFSCAGVINATF*VFFLLE
Trigger: TTCCAGGAGGAAGAAGACTCAGAAAGTGGCGTTTAT...GACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp ATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGCGTCTGAGTGTCTGGGTGAATaGAGGCAATATTGTGGTACG +
Preference number: 4 (lower is better)
Translates to: MRQTVTPRLCSSSPARASECLGE*RQYCGT
Trigger: CGTACCACAATATTGCCTTCATTCACCCAGACACTC...AGACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp ATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGCGTCTATGGGAGTGTCTGGGTaGATGAAGGCAATATTGTGG +
Preference number: 4 (lower is better)
Translates to: MRQTVTPRLCSSSPARASMGVSG*MKAILW
Trigger: CCACAATATTGCCTTCATTCACCCAGACACTCCCAT...AGACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGGCCTGGGTCACTGTaGTGTCCAAGTTATTGTACG +
Preference number: 4 (lower is better)
Translates to: SVHEANRDPETLFKFSCAGPGSL*CPSYCT
Trigger: CGTACAATAACTTGGACATCACAGTGACCCAGGCCC...CGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAACACCCTCAAAATACTaGGAGCGGTGCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSTPSKY*ERCCRA
Trigger: GGCCCTGCAGCACCGCTCGCAGTATTTTGAGGGTGT...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCACATCCAGGAGCGGCATaGCAAAGGAACTCAGGTCCG +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSHPGAA*QRNSGP
Trigger: CGGACCTGAGTTCCTTTGCCATGCCGCTCCTGGATG...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CCA 90 bp AAGACGTCTTCCGTTACTTCTTCCCTGCGACCACAGCCTGTTTTCATAAACGTTTCCGACTGGCGCCGCTaGGTGCTTCGGTTTTGGTCC +
Preference number: 4 (lower is better)
Translates to: KTSSVTSSLRPQPVFINVSDWRR*VLRFWS
Trigger: GGACCAAAACCGAAGCACCCAGCGGCGCCAGTCGGA...AACGTTTATGAAAACAGGCTGTGGTCGCAGGGAAGAAGTAACGGAAGACGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS-3UTR TCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGGAAGACAACAAGCTTTaGACTGGTTGGAACGATGTC +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPEDNKL*TGWNDV
Trigger: GACATCGTTCCAACCAGTTCAAAGCTTGTTGTCTTC...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCACTTCTGTTTGGCACCTaGTGGTGTGAGGATCAGGGC +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSLLFGT*WCEDQG
Trigger: GCCCTGATCCTCACACCAGCAGGTGCCAAACAGAAG...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCACTGCACGGACTCCGTTaGCTACCAAGGCAAAGAAGG +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSLHGLR*LPRQRR
Trigger: CCTTCTTTGCCTTGGTAGCCAACGGAGTCCGTGCAG...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTAGGTCGCGCTGGGCTCTaGAAGGCCAGGCAGAAGCGC +
Preference number: 4 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLGRAGL*KARQKR
Trigger: GCGCTTCTGCCTGGCCTTTCAGAGCCCAGCGCGACC...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR TCA 90 bp GACAATACTGTTTTATGTGTCACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCGGTCGCGCTGGGCTCTaGAAGGCCAGGCAGAAGCGC +
Preference number: 4 (lower is better)
Translates to: DNTVLCVTIKVTSVLSAVGRAGL*KARQKR
Trigger: GCGCTTCTGCCTGGCCTTTCAGAGCCCAGCGCGACC...GACCGCTGACAAGACGCTTGTAACTTTTATTGTGACACATAAAACAGTATTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR TCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAGGGCCTGGGTCACTGTaGTGTCCAAGTTATTGTACG +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSGPGSL*CPSYCT
Trigger: CGTACAATAACTTGGACATCACAGTGACCCAGGCCC...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AGAGACTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGGCTTGCAGGATGTCTaGCAGGGAGATAATACCCAC +
Preference number: 4 (lower is better)
Translates to: RDWVKGLKMLTLGLGVSSGLQDV*QGDNTH
Trigger: GTGGGTATTATCTCCCTGTCAGACATCCTGCAAGCC...TGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAGTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp TGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACAGGTCTGAGGGCAGTTTCCCACAGCGGCGCTaGACGGACTCCGTTGGCTAC +
Preference number: 4 (lower is better)
Translates to: CTLMTYSIENPSDRSEGSFPQRR*TDSVGY
Trigger: GTAGCCAACGGAGTCCGTGCAGCGCCGCTGTGGGAA...ACTGCCCTCAGACCTGTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp AGAGACTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCATGGGCGAAGACTCTTTaGATGAGGAGCGGAAGATCC +
Preference number: 4 (lower is better)
Translates to: RDWVKGLKMLTLGLGVSSWAKTL*MRSGRS
Trigger: GGATCTTCCGCTCCTCATCCAAAGAGTCTTCGCCCA...TGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAGTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAGAAATGGGTGCTGCTTaGTCACTTGGGTGGGTGTTG +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSEMGAA*SLGWVL
Trigger: CAACACCCACCCAAGTGACCAAGCAGCACCCATTTC...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp GGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCGATGATGGGAGTGTCTaGGTGAATGAAGGCAATATT +
Preference number: 4 (lower is better)
Translates to: GLKMLTLGLGVSSAALWGDDGSV*VNEGNI
Trigger: AATATTGCCTTCATTCACCCAGACACTCCCATCATC...GCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGGATGATGGGAGTGTCTaGGTGAATGAAGGCAATATT +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPDDGSV*VNEGNI
Trigger: AATATTGCCTTCATTCACCCAGACACTCCCATCATC...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGATAAACGCCACTTTCTaGGTCTTCTTCCTCCTGGAA +
Preference number: 4 (lower is better)
Translates to: SVHEANRDPETLFKFSCAINATF*VFFLLE
Trigger: TTCCAGGAGGAAGAAGACTCAGAAAGTGGCGTTTAT...CGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGACTTGTGTGACCTCATaGATCGCATATAAACGCCAC +
Preference number: 4 (lower is better)
Translates to: SVHEANRDPETLFKFSCATCVTS*IAYKRH
Trigger: GTGGCGTTTATATGCGATTCATGAGGTCACACAAGT...CGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp CTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTGTGTGACCTCATaGATCGCATATAAACGCCAC +
Preference number: 4 (lower is better)
Translates to: LGKRSEDAHTWAGCLFSSTCVTS*IAYKRH
Trigger: GTGGCGTTTATATGCGATTCATGAGGTCACACAAGT...GCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp CTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCGAAGACAACAAGCTTTaGACTGGTTGGAACGATGTC +
Preference number: 4 (lower is better)
Translates to: LGKRSEDAHTWAGCLFSSEDNKL*TGWNDV
Trigger: GACATCGTTCCAACCAGTTCAAAGCTTGTTGTCTTC...GCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp TTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGTTCACTCACTTTCTGATGGGAGTGTCTGGGTaGATGAAGGCAATATTGTGG +
Preference number: 4 (lower is better)
Translates to: LRLDIRHRDLDVPFTHFLMGVSG*MKAILW
Trigger: CCACAATATTGCCTTCATTCACCCAGACACTCCCAT...CAGAAAGTGAGTGAACGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp AAGACGTCTTCCGTTACTTCTTCCCTGCGACCACAGCCTGTTTTCATAAACGTTTCCAGGGGAAATGGGTaGTGCTTGGTCACTTGGGTG +
Preference number: 4 (lower is better)
Translates to: KTSSVTSSLRPQPVFINVSRGNG*CLVTWV
Trigger: CACCCAAGTGACCAAGCAGCACCCATTTCCCCTGGA...AACGTTTATGAAAACAGGCTGTGGTCGCAGGGAAGAAGTAACGGAAGACGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR GCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGATTCCTACAAAGCTCTaGTTTTTACTTTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPIPTKL*FLLSHS
Trigger: GCTGTGGGAAAGTAAAAAGCAGAGCTTTGTAGGAAT...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AAGACGTCTTCCGTTACTTCTTCCCTGCGACCACAGCCTGTTTTCATAAACGTTCCAGGTTCTGCTTCATaGAGGCAGGCTTTGGCATGT +
Preference number: 4 (lower is better)
Translates to: KTSSVTSSLRPQPVFINVPGSAS*RQALAC
Trigger: ACATGCCAAAGCCTGCCTTCATGAAGCAGAACCTGG...AACGTTTATGAAAACAGGCTGTGGTCGCAGGGAAGAAGTAACGGAAGACGTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGTTCCCACAGCGGCGCTaGACGGACTCCGTTGGCTAC +
Preference number: 4 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTFPQRR*TDSVGY
Trigger: GTAGCCAACGGAGTCCGTGCAGCGCCGCTGTGGGAA...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp AGAGACTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGTGTTTCCAGCTTACTaGACTTCACCACACCCTCAA +
Preference number: 4 (lower is better)
Translates to: RDWVKGLKMLTLGLGVSSVFPAY*TSPHPQ
Trigger: TTGAGGGTGTGGTGAAGTGCAGTAAGCTGGAAACAC...TGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAGTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACCCGGCGTGGAGAGCGTaGAGGGGACTCCTGGTAGGA +
Preference number: 4 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDPAWRA*RGLLVG
Trigger: TCCTACCAGGAGTCCCCTCCACGCTCTCCACGCCGG...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CCA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACGCGCTGCCCAGTGTCTaGAGGGGACGAGGAAGCATA +
Preference number: 4 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNALPSV*RGRGSI
Trigger: TATGCTTCCTCGTCCCCTCCAGACACTGGGCAGCGC...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGTCAGACATAAAAAGCTaGAGGAACTTGAGGATTCTT +
Preference number: 4 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPSDIKS*RNLRIL
Trigger: AAGAATCCTCAAGTTCCTCCAGCTTTTTATGTCTGA...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp ACTTTCTGTCACCTGTTCCATCCCAGTGACTTCTTTGAAATGAAAAGTAGTACTGAGGCAAAAAGGCCATaGGGTTCCGACTGGCGCCGC +
Preference number: 4 (lower is better)
Translates to: TFCHLFHPSDFFEMKSSTEAKRP*GSDWRR
Trigger: GCGGCGCCAGTCGGAACCCCATGGCCTTTTTGCCTC...AGTACTACTTTTCATTTCAAAGAAGTCACTGGGATGGAACAGGTGACAGAAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS-3UTR TCA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTATGGCACCTGCTGGTGTaGGGATCAGGGCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLWHLLV*GSGLAG
Trigger: TCCTGCAAGCCCTGATCCTCACACCAGCAGGTGCCA...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACTACTGCGAGCGGTGCTaGAGGGCCTGGGTCACTGTG +
Preference number: 4 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDYCERC*RAWVTV
Trigger: CACAGTGACCCAGGCCCTGCAGCACCGCTCGCAGTA...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGACTGGCGCCGCTGGGTaGTTCGGTTTTGGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTTGAAG*FGFGPW
Trigger: CCAAGGACCAAAACCGAAGCACCCAGCGGCGCCAGT...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp TGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACAGGTCTGAGGGCAGTCTGTTTGGCACCTGCTaGTGTGAGGATCAGGGCTTG +
Preference number: 4 (lower is better)
Translates to: CTLMTYSIENPSDRSEGSLFGTC*CEDQGL
Trigger: CAAGCCCTGATCCTCACACCAGCAGGTGCCAAACAG...ACTGCCCTCAGACCTGTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AAGACGTCTTCCGTTACTTCTTCCCTGCGACCACAGCCTGTTTTCATAAACGTTATGGGAGTGTCTGGGTaGATGAAGGCAATATTGTGG +
Preference number: 4 (lower is better)
Translates to: KTSSVTSSLRPQPVFINVMGVSG*MKAILW
Trigger: CCACAATATTGCCTTCATTCACCCAGACACTCCCAT...AACGTTTATGAAAACAGGCTGTGGTCGCAGGGAAGAAGTAACGGAAGACGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp TGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACAGGTCTGAGGGCAGTGGCTTGCAGGATGTCTaGCAGGGAGATAATACCCAC +
Preference number: 4 (lower is better)
Translates to: CTLMTYSIENPSDRSEGSGLQDV*QGDNTH
Trigger: GTGGGTATTATCTCCCTGTCAGACATCCTGCAAGCC...ACTGCCCTCAGACCTGTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACTGGCACCTGCTGGTGTaGGGATCAGGGCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDWHLLV*GSGLAG
Trigger: TCCTGCAAGCCCTGATCCTCACACCAGCAGGTGCCA...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp ACTTTCTGTCACCTGTTCCATCCCAGTGACTTCTTTGAAATGAAAAGTAGTACTAAATACTGCGAGCGGTaGTGCAGGGCCTGGGTCACT +
Preference number: 4 (lower is better)
Translates to: TFCHLFHPSDFFEMKSSTKYCER*CRAWVT
Trigger: AGTGACCCAGGCCCTGCAGCACCGCTCGCAGTATTT...AGTACTACTTTTCATTTCAAAGAAGTCACTGGGATGGAACAGGTGACAGAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp TTACAAATCACTGGAAAAATACCCATCGCTAAACCCTGGTATACATTCTTAGCCAAATACTGCGAGCGGTaGTGCAGGGCCTGGGTCACT +
Preference number: 4 (lower is better)
Translates to: LQITGKIPIAKPWYTFLAKYCER*CRAWVT
Trigger: AGTGACCCAGGCCCTGCAGCACCGCTCGCAGTATTT...GGCTAAGAATGTATACCAGGGTTTAGCGATGGGTATTTTTCCAGTGATTTGTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp ACTTTCTGTCACCTGTTCCATCCCAGTGACTTCTTTGAAATGAAAAGTAGTACTACACCCTCAAAATACTaGGAGCGGTGCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: TFCHLFHPSDFFEMKSSTTPSKY*ERCCRA
Trigger: GGCCCTGCAGCACCGCTCGCAGTATTTTGAGGGTGT...AGTACTACTTTTCATTTCAAAGAAGTCACTGGGATGGAACAGGTGACAGAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp TGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACAGGTCTGAGGGCAGTTGCTGCTTGGTCACTTaGGTGGGTGTTGACGGAGAA +
Preference number: 4 (lower is better)
Translates to: CTLMTYSIENPSDRSEGSCCLVT*VGVDGE
Trigger: TTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCA...ACTGCCCTCAGACCTGTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACCTGCACGGACTCCGTTaGCTACCAAGGCAAAGAAGG +
Preference number: 4 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNLHGLR*LPRQRR
Trigger: CCTTCTTTGCCTTGGTAGCCAACGGAGTCCGTGCAG...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp CTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCTCAGACATAAAAAGCTaGAGGAACTTGAGGATTCTT +
Preference number: 4 (lower is better)
Translates to: LGKRSEDAHTWAGCLFSSSDIKS*RNLRIL
Trigger: AAGAATCCTCAAGTTCCTCCAGCTTTTTATGTCTGA...GCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp AGAGACTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAATGAAGGCAATATTGTaGTACGTTCCGATTCCAAGC +
Preference number: 4 (lower is better)
Translates to: RDWVKGLKMLTLGLGVSSMKAIL*YVPIPS
Trigger: GCTTGGAATCGGAACGTACCACAATATTGCCTTCAT...TGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAGTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAGTCATAACACTTGTGTaGCCTCATGAATCGCATATA +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSVITLV*PHESHI
Trigger: TATATGCGATTCATGAGGTCACACAAGTGTTATGAC...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAACCTTCCGAGATGAATaGTTTTCTGAATTCTCCACA +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSTFRDE*FSEFST
Trigger: TGTGGAGAATTCAGAAAAGCATTCATCTCGGAAGGT...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR GCA 90 bp ACTTTCTGTCACCTGTTCCATCCCAGTGACTTCTTTGAAATGAAAAGTAGTACTAGGGGAAATGGGTGCTaGTTGGTCACTTGGGTGGGT +
Preference number: 4 (lower is better)
Translates to: TFCHLFHPSDFFEMKSSTRGNGC*LVTWVG
Trigger: ACCCACCCAAGTGACCAAGCAGCACCCATTTCCCCT...AGTACTACTTTTCATTTCAAAGAAGTCACTGGGATGGAACAGGTGACAGAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR GCA 90 bp GACAATACTGTTTTATGTGTCACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCTCCAGGGGAAATGGGTaGTGCTTGGTCACTTGGGTG +
Preference number: 4 (lower is better)
Translates to: DNTVLCVTIKVTSVLSAVSRGNG*CLVTWV
Trigger: CACCCAAGTGACCAAGCAGCACCCATTTCCCCTGGA...GACCGCTGACAAGACGCTTGTAACTTTTATTGTGACACATAAAACAGTATTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp TTACAAATCACTGGAAAAATACCCATCGCTAAACCCTGGTATACATTCTTAGCCACGGGAACACAGTTTTaGGAGAGCCAGGGCTCGTCT +
Preference number: 4 (lower is better)
Translates to: LQITGKIPIAKPWYTFLATGTQF*ESQGSS
Trigger: AGACGAGCCCTGGCTCTCCCAAAACTGTGTTCCCGT...GGCTAAGAATGTATACCAGGGTTTAGCGATGGGTATTTTTCCAGTGATTTGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CCA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACTGCTGCTTGGTCACTTaGGTGGGTGTTGACGGAGAA +
Preference number: 4 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNCCLVT*VGVDGE
Trigger: TTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCA...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGGGACTCCAGGGGAAATaGGTGCTGCTTGGTCACTTG +
Preference number: 4 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTGLQGK*VLLGHL
Trigger: CAAGTGACCAAGCAGCACCCATTTCCCCTGGAGTCC...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp ACTTTCTGTCACCTGTTCCATCCCAGTGACTTCTTTGAAATGAAAAGTAGTACTGGACTCCAGGGGAAATaGGTGCTGCTTGGTCACTTG +
Preference number: 4 (lower is better)
Translates to: TFCHLFHPSDFFEMKSSTGLQGK*VLLGHL
Trigger: CAAGTGACCAAGCAGCACCCATTTCCCCTGGAGTCC...AGTACTACTTTTCATTTCAAAGAAGTCACTGGGATGGAACAGGTGACAGAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp TTACAAATCACTGGAAAAATACCCATCGCTAAACCCTGGTATACATTCTTAGCCATAGATGCGGCTCTCTaGGCGTTCAGGCTCCTGCTT +
Preference number: 4 (lower is better)
Translates to: LQITGKIPIAKPWYTFLAIDAAL*AFRLLL
Trigger: AAGCAGGAGCCTGAACGCCCAGAGAGCCGCATCTAT...GGCTAAGAATGTATACCAGGGTTTAGCGATGGGTATTTTTCCAGTGATTTGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCACAACAAGCTTTGAACTaGTTGGAACGATGTCATAAC +
Preference number: 4 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSQQALN*LERCHN
Trigger: GTTATGACATCGTTCCAACCAGTTCAAAGCTTGTTG...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp TGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACAGGTCTGAGGGCAGTCTATCCTGTCCACGATaGTCTCCAGTGTTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: CTLMTYSIENPSDRSEGSLSCPR*SPVFPA
Trigger: AGCTGGAAACACTGGAGACCATCGTGGACAGGATAG...ACTGCCCTCAGACCTGTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGCTGTTTGGCACCTGCTaGTGTGAGGATCAGGGCTTG +
Preference number: 4 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTLFGTC*CEDQGL
Trigger: CAAGCCCTGATCCTCACACCAGCAGGTGCCAAACAG...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGCCAGGTTCTGCTTCATaGAGGCAGGCTTTGGCATGT +
Preference number: 4 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTPGSAS*RQALAC
Trigger: ACATGCCAAAGCCTGCCTTCATGAAGCAGAACCTGG...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGGGTCCTTGGGTTTCTTaGTGCCCCTCAGACTTCCAA +
Preference number: 4 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTGPWVS*CPSDFQ
Trigger: TTGGAAGTCTGAGGGGCACCAAGAAACCCAAGGACC...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACTTCGGTTTTGGTCCTTaGGTTTCTTGGTGCCCCTCA +
Preference number: 4 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNFGFGP*VSWCPS
Trigger: TGAGGGGCACCAAGAAACCCAAGGACCAAAACCGAA...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACGAGAAGAGGAGACGCTaGAGGCAAAAAGGCCATGGG +
Preference number: 4 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDEKRRR*RQKGHG
Trigger: CCCATGGCCTTTTTGCCTCCAGCGTCTCCTCTTCTC...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS-3UTR CCA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTATCTTCTGCTTCCTCCTaGAACTCCAGCTTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLSSASS*NSSFSS
Trigger: GCTGGAGAAGCTGGAGTTCCAGGAGGAAGCAGAAGA...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS-3UTR TCA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACCCAGGTTCTGCTTCATaGAGGCAGGCTTTGGCATGT +
Preference number: 4 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDPGSAS*RQALAC
Trigger: ACATGCCAAAGCCTGCCTTCATGAAGCAGAACCTGG...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp AAGACGTCTTCCGTTACTTCTTCCCTGCGACCACAGCCTGTTTTCATAAACGTTCAACAAGCTTTGAACTaGTTGGAACGATGTCATAAC +
Preference number: 4 (lower is better)
Translates to: KTSSVTSSLRPQPVFINVQQALN*LERCHN
Trigger: GTTATGACATCGTTCCAACCAGTTCAAAGCTTGTTG...AACGTTTATGAAAACAGGCTGTGGTCGCAGGGAAGAAGTAACGGAAGACGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACTATCCTGTCCACGATaGTCTCCAGTGTTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLLSCPR*SPVFPA
Trigger: AGCTGGAAACACTGGAGACCATCGTGGACAGGATAG...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTAGAGTGTCTGGGTGAATaGAGGCAATATTGTGGTACG +
Preference number: 4 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLECLGE*RQYCGT
Trigger: CGTACCACAATATTGCCTTCATTCACCCAGACACTC...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACATCTACAACTTTTCCTaGCTCATCCACCACAGGCAA +
Preference number: 4 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNIYNFS*LIHHRQ
Trigger: TTGCCTGTGGTGGATGAGTCAGGAAAAGTTGTAGAT...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp TGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACAGGTCTGAGGGCAGTGGTAAGTATATAAAGTaGGTTCCCACTGATAGGGTC +
Preference number: 4 (lower is better)
Translates to: CTLMTYSIENPSDRSEGSGKYIK*VPTDRV
Trigger: GACCCTATCAGTGGGAACGCACTTTATATACTTACC...ACTGCCCTCAGACCTGTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGAGCTCATCCAGGTTCTaGTTCATGAAGGCAGGCTTT +
Preference number: 4 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTSSSRF*FMKAGF
Trigger: AAAGCCTGCCTTCATGAAGCAGAACCTGGATGAGCT...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp ACTTTCTGTCACCTGTTCCATCCCAGTGACTTCTTTGAAATGAAAAGTAGTACTGTGTTTCCAGCTTACTaGACTTCACCACACCCTCAA +
Preference number: 4 (lower is better)
Translates to: TFCHLFHPSDFFEMKSSTVFPAY*TSPHPQ
Trigger: TTGAGGGTGTGGTGAAGTGCAGTAAGCTGGAAACAC...AGTACTACTTTTCATTTCAAAGAAGTCACTGGGATGGAACAGGTGACAGAAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp TTACAAATCACTGGAAAAATACCCATCGCTAAACCCTGGTATACATTCTTAGCCGTGTTTCCAGCTTACTaGACTTCACCACACCCTCAA +
Preference number: 4 (lower is better)
Translates to: LQITGKIPIAKPWYTFLAVFPAY*TSPHPQ
Trigger: TTGAGGGTGTGGTGAAGTGCAGTAAGCTGGAAACAC...GGCTAAGAATGTATACCAGGGTTTAGCGATGGGTATTTTTCCAGTGATTTGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACCTATCCTGTCCACGATaGTCTCCAGTGTTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDLSCPR*SPVFPA
Trigger: AGCTGGAAACACTGGAGACCATCGTGGACAGGATAG...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp GACAATACTGTTTTATGTGTCACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACTTGTGTGACCTCATaGATCGCATATAAACGCCAC +
Preference number: 4 (lower is better)
Translates to: DNTVLCVTIKVTSVLSAVTCVTS*IAYKRH
Trigger: GTGGCGTTTATATGCGATTCATGAGGTCACACAAGT...GACCGCTGACAAGACGCTTGTAACTTTTATTGTGACACATAAAACAGTATTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp TGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACAGGTCTGAGGGCAGTGTCATAACACTTGTGTaGCCTCATGAATCGCATATA +
Preference number: 4 (lower is better)
Translates to: CTLMTYSIENPSDRSEGSVITLV*PHESHI
Trigger: TATATGCGATTCATGAGGTCACACAAGTGTTATGAC...ACTGCCCTCAGACCTGTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp GACAATACTGTTTTATGTGTCACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCATCTACAACTTTTCCTaGCTCATCCACCACAGGCAA +
Preference number: 4 (lower is better)
Translates to: DNTVLCVTIKVTSVLSAVIYNFS*LIHHRQ
Trigger: TTGCCTGTGGTGGATGAGTCAGGAAAAGTTGTAGAT...GACCGCTGACAAGACGCTTGTAACTTTTATTGTGACACATAAAACAGTATTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGATCTACAACTTTTCCTaGCTCATCCACCACAGGCAA +
Preference number: 4 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTIYNFS*LIHHRQ
Trigger: TTGCCTGTGGTGGATGAGTCAGGAAAAGTTGTAGAT...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACATAAACGCCACTTTCTaGGTCTTCTGCTTCCTCCTG +
Preference number: 4 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDINATF*VFCFLL
Trigger: CAGGAGGAAGCAGAAGACTCAGAAAGTGGCGTTTAT...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS-3UTR GCA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACGGTAAGTATATAAAGTaGGTTCCCACTGATAGGGTC +
Preference number: 4 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNGKYIK*VPTDRV
Trigger: GACCCTATCAGTGGGAACGCACTTTATATACTTACC...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACAGCTCATCCAGGTTCTaGTTCATGAAGGCAGGCTTT +
Preference number: 4 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDSSSRF*FMKAGF
Trigger: AAAGCCTGCCTTCATGAAGCAGAACCTGGATGAGCT...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACATGAAGGCAATATTGTaGTACGTTCCGATTCCAAGC +
Preference number: 4 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNMKAIL*YVPIPS
Trigger: GCTTGGAATCGGAACGTACCACAATATTGCCTTCAT...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp GACAATACTGTTTTATGTGTCACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCGGTAAGTATATAAAGTaGGTTCCCACTGATAGGGTC +
Preference number: 4 (lower is better)
Translates to: DNTVLCVTIKVTSVLSAVGKYIK*VPTDRV
Trigger: GACCCTATCAGTGGGAACGCACTTTATATACTTACC...GACCGCTGACAAGACGCTTGTAACTTTTATTGTGACACATAAAACAGTATTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACCAACAAGCTTTGAACTaGTTGGAACGATGTCATAAC +
Preference number: 4 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNQQALN*LERCHN
Trigger: GTTATGACATCGTTCCAACCAGTTCAAAGCTTGTTG...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp ACTTTCTGTCACCTGTTCCATCCCAGTGACTTCTTTGAAATGAAAAGTAGTACTATGAAGGCAATATTGTaGTACGTTCCGATTCCAAGC +
Preference number: 4 (lower is better)
Translates to: TFCHLFHPSDFFEMKSSTMKAIL*YVPIPS
Trigger: GCTTGGAATCGGAACGTACCACAATATTGCCTTCAT...AGTACTACTTTTCATTTCAAAGAAGTCACTGGGATGGAACAGGTGACAGAAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTAGATGATGGGAGTGTCTaGGTGAATGAAGGCAATATT +
Preference number: 4 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLDDGSV*VNEGNI
Trigger: AATATTGCCTTCATTCACCCAGACACTCCCATCATC...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR TCA 90 bp GACAATACTGTTTTATGTGTCACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCGTCATAACACTTGTGTaGCCTCATGAATCGCATATA +
Preference number: 4 (lower is better)
Translates to: DNTVLCVTIKVTSVLSAVVITLV*PHESHI
Trigger: TATATGCGATTCATGAGGTCACACAAGTGTTATGAC...GACCGCTGACAAGACGCTTGTAACTTTTATTGTGACACATAAAACAGTATTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR GCA 90 bp ACTTTCTGTCACCTGTTCCATCCCAGTGACTTCTTTGAAATGAAAAGTAGTACTATTCCTACAAAGCTCTaGTTTTTACTTTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: TFCHLFHPSDFFEMKSSTIPTKL*FLLSHS
Trigger: GCTGTGGGAAAGTAAAAAGCAGAGCTTTGTAGGAAT...AGTACTACTTTTCATTTCAAAGAAGTCACTGGGATGGAACAGGTGACAGAAAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CCA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTATCAGACATAAAAAGCTaGAGGAACTTGAGGATTCTT +
Preference number: 4 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLSDIKS*RNLRIL
Trigger: AAGAATCCTCAAGTTCCTCCAGCTTTTTATGTCTGA...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS GCA 90 bp CGCCGCCAGCACCGCAGTTCTCAAAGGAGCATGGTATGTCGGGGATaGCAGCGGAGGTCGCGCTGGGCTCTGAAAGGCCAGGCAGAAGCG +
Preference number: 5 (lower is better)
Translates to: RRQHRSSQRSMVCRG*QRRSRWALKGQAEA
Trigger: CGCTTCTGCCTGGCCTTTCAGAGCCCAGCGCGACCTCCGCTGGCATCCCCGACATACCATGCTCCTTTGAGAACTGCGGTGCTGGCGGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS GCA 90 bp TTTCTGAGTCTTCTGCTTCCTCCTGGAACTCCAGCTTCTCCAGCATaGCGGCTTCCGCGGGTCCCGGGGCCGCCGCCAGCACCGCAGTTC +
Preference number: 5 (lower is better)
Translates to: FLSLLLPPGTPASPA*RLPRVPGPPPAPQF
Trigger: GAACTGCGGTGCTGGCGGCGGCCCCGGGACCCGCGGAAGCCGGCATGCTGGAGAAGCTGGAGTTCCAGGAGGAAGCAGAAGACTCAGAAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS GCA 90 bp GGCAGAAGCGCTGCCCAGTGTCTGGAGGGGACGAGGAAGCATAGATaGGGCTCTCTGGGCGTTCAGGCTCCTGCTTGTAGGACTCCAGGG +
Preference number: 5 (lower is better)
Translates to: GRSAAQCLEGTRKHR*GSLGVQAPACRTPG
Trigger: CCCTGGAGTCCTACAAGCAGGAGCCTGAACGCCCAGAGAGCCGCATCTATGCTTCCTCGTCCCCTCCAGACACTGGGCAGCGCTTCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS CCA 90 bp GAGAGCGTGGAGGGGACTCCTGGTAGGAGAACGGGAACACAGTTTTaGGAGAGCCAGGGCTCGTCTTGGGCCTCACGGGAGCAGACACAG +
Preference number: 5 (lower is better)
Translates to: ESVEGTPGRRTGTQF*ESQGSSWASREQTQ
Trigger: CTGTGTCTGCTCCCGTGAGGCCCAAGACGAGCCCTGGCTCTCCCAAAACTGTGTTCCCGTTCTCCTACCAGGAGTCCCCTCCACGCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CCA 90 bp CTGCCCAGTGTCTGGAGGGGACGAGGAAGCATAGATGCGGCTCTCTaGGCGTTCAGGCTCCTGCTTGTAGGACTCCAGGGGAAATGGGTG +
Preference number: 5 (lower is better)
Translates to: LPSVWRGRGSIDAAL*AFRLLLVGLQGKWV
Trigger: CACCCATTTCCCCTGGAGTCCTACAAGCAGGAGCCTGAACGCCCAGAGAGCCGCATCTATGCTTCCTCGTCCCCTCCAGACACTGGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS TCA 90 bp TGGAGTTGGGCGAAGACTCTTTGGATGAGGAGCGGAAGATCCCACTaGAGCTCATCCGGCGTGGAGAGCGTGGAGGGGACTCCTGGTAGG +
Preference number: 5 (lower is better)
Translates to: WSWAKTLWMRSGRSH*SSSGVESVEGTPGR
Trigger: CCTACCAGGAGTCCCCTCCACGCTCTCCACGCCGGATGAGCTTCAGTGGGATCTTCCGCTCCTCATCCAAAGAGTCTTCGCCCAACTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS TCA 90 bp CCCAGGAGAGGTAGACGGGTTGGAGTTGGGCGAAGACTCTTTGGATaGGGAGCGGAAGATCCCACTGAAGCTCATCCGGCGTGGAGAGCG +
Preference number: 5 (lower is better)
Translates to: PRRGRRVGVGRRLFG*GAEDPTEAHPAWRA
Trigger: CGCTCTCCACGCCGGATGAGCTTCAGTGGGATCTTCCGCTCCTCATCCAAAGAGTCTTCGCCCAACTCCAACCCGTCTACCTCTCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CCA 90 bp GTTCAGGCTCCTGCTTGTAGGACTCCAGGGGAAATGGGTGCTGCTTaGTCACTTGGGTGGGTGTTGACGGAGAAGAGGAGACGCTGGAGG +
Preference number: 5 (lower is better)
Translates to: VQAPACRTPGEMGAA*SLGWVLTEKRRRWR
Trigger: CCTCCAGCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCACCCATTTCCCCTGGAGTCCTACAAGCAGGAGCCTGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CAA 90 bp CATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGCGTCTCTGTCTCCTTCTGTTaGGCACCTGCTGGTGTGAGG +
Preference number: 5 (lower is better)
Translates to: HEANRDPETLFKFSCAGVSVSFC*APAGVR
Trigger: CCTCACACCAGCAGGTGCCAAACAGAAGGAGACAGA...GACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS GCA 90 bp TCTCCATCCAGGAGCGGCATGGCAAAGGAACTCAGGTCCGGAATGTaGACTCGCAGTGACCGCCTCTTCAGGCTAGGGTTCTTTTTGCCA +
Preference number: 5 (lower is better)
Translates to: SPSRSGMAKELRSGM*TRSDRLFRLGFFLP
Trigger: TGGCAAAAAGAACCCTAGCCTGAAGAGGCGGTCACTGCGAGTGCACATTCCGGACCTGAGTTCCTTTGCCATGCCGCTCCTGGATGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CCA 90 bp GCTTGTAGGACTCCAGGGGAAATGGGTGCTGCTTGGTCACTTGGGTaGGTGTTGACGGAGAAGAGGAGACGCTGGAGGTTTTTCTGGACC +
Preference number: 5 (lower is better)
Translates to: ACRTPGEMGAAWSLG*VLTEKRRRWRFFWT
Trigger: GGTCCAGAAAAACCTCCAGCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCACCCATTTCCCCTGGAGTCCTACAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CCA 90 bp GCTTGTAGGACTCCAGGGGAAATGGGTGCTGCTTGGTCACTTGGGTaGGTGTTGACGGAGAAGAGGAGACGCTGGAGGCAAAAAGGCCAT +
Preference number: 5 (lower is better)
Translates to: ACRTPGEMGAAWSLG*VLTEKRRRWRQKGH
Trigger: ATGGCCTTTTTGCCTCCAGCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCACCCATTTCCCCTGGAGTCCTACAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS-3UTR CAA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGTTGGGCGAAGACTCTTaGGATGAGGAGCGGAAGATC +
Preference number: 5 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPLGEDS*DEERKI
Trigger: GATCTTCCGCTCCTCATCCAAAGAGTCTTCGCCCAA...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CAA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGGTAGACGGGTTGGAGTaGGGCGAAGACTCTTTGGAT +
Preference number: 5 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPVDGLE*GEDSLD
Trigger: ATCCAAAGAGTCTTCGCCCAACTCCAACCCGTCTAC...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CAA 90 bp AGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGAAATGGGTGCTGCTaGGTCACTTGGGTGGGTGTT +
Preference number: 5 (lower is better)
Translates to: SVHEANRDPETLFKFSCAGNGCC*VTWVGV
Trigger: AACACCCACCCAAGTGACCAAGCAGCACCCATTTCC...CGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS CCA 90 bp ATGAATGCTTTTCTGAATTCTCCACATCTCCATCCAGGAGCGGCATaGCAAAGGAACTCAGGTCCGGAATGTGCACTCGCAGTGACCGCC +
Preference number: 5 (lower is better)
Translates to: MNAFLNSPHLHPGAA*QRNSGPECALAVTA
Trigger: GGCGGTCACTGCGAGTGCACATTCCGGACCTGAGTTCCTTTGCCATGCCGCTCCTGGATGGAGATGTGGAGAATTCAGAAAAGCATTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CAA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAACGGGAACACAGTTTaGGGAGAGCCAGGGCTCGTC +
Preference number: 5 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSNGNTV*GEPGLV
Trigger: GACGAGCCCTGGCTCTCCCAAAACTGTGTTCCCGTT...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CAA 90 bp TTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGTTCACTCACTTTCTGGGAAATGGGTGCTGCTaGGTCACTTGGGTGGGTGTT +
Preference number: 5 (lower is better)
Translates to: LRLDIRHRDLDVPFTHFLGNGCC*VTWVGV
Trigger: AACACCCACCCAAGTGACCAAGCAGCACCCATTTCC...CAGAAAGTGAGTGAACGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CAA 90 bp GGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCAAGATGTTCAAGGCTTaGATGATGGGAGTGTCTGGG +
Preference number: 5 (lower is better)
Translates to: GLKMLTLGLGVSSAALWGKMFKA*MMGVSG
Trigger: CCCAGACACTCCCATCATCAAAGCCTTGAACATCTT...GCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS GCA 90 bp TCCAGCTTACTGCACTTCACCACACCCTCAAAATACTGCGAGCGGTaGTGCAGGGCCTGGGTCACTGTGATGTCCAAGTTATTGTACGTT +
Preference number: 5 (lower is better)
Translates to: SSLLHFTTPSKYCER*CRAWVTVMSKLLYV
Trigger: AACGTACAATAACTTGGACATCACAGTGACCCAGGCCCTGCAGCACCGCTCGCAGTATTTTGAGGGTGTGGTGAAGTGCAGTAAGCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp ATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGGCGTCTCGAAGACAACAAGCTTaGAACTGGTTGGAACGATGT +
Preference number: 5 (lower is better)
Translates to: MRQTVTPRLCSSSPARASRRQQA*NWLERC
Trigger: ACATCGTTCCAACCAGTTCAAAGCTTGTTGTCTTCG...AGACGCCCGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp AGAGACTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCATCTGTCTCCTTCTGTTaGGCACCTGCTGGTGTGAGG +
Preference number: 5 (lower is better)
Translates to: RDWVKGLKMLTLGLGVSSSVSFC*APAGVR
Trigger: CCTCACACCAGCAGGTGCCAAACAGAAGGAGACAGA...TGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAGTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS GCA 90 bp AGCTTACTGCACTTCACCACACCCTCAAAATACTGCGAGCGGTGCTaGAGGGCCTGGGTCACTGTGATGTCCAAGTTATTGTACGTTTTC +
Preference number: 5 (lower is better)
Translates to: SLLHFTTPSKYCERC*RAWVTVMSKLLYVF
Trigger: GAAAACGTACAATAACTTGGACATCACAGTGACCCAGGCCCTGCAGCACCGCTCGCAGTATTTTGAGGGTGTGGTGAAGTGCAGTAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS GCA 90 bp TCTGTCTCCTTCTGTTTGGCACCTGCTGGTGTGAGGATCAGGGCTTaGAGGATGTCTGACAGGGAGATAATACCCACAATGCTATCTGCT +
Preference number: 5 (lower is better)
Translates to: SVSFCLAPAGVRIRA*RMSDREIIPTMLSA
Trigger: AGCAGATAGCATTGTGGGTATTATCTCCCTGTCAGACATCCTGCAAGCCCTGATCCTCACACCAGCAGGTGCCAAACAGAAGGAGACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp GGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAGCAGCACTTTGGGGCCAAGCTTTGAACTGGTaGGAACGATGTCATAACACT +
Preference number: 5 (lower is better)
Translates to: GLKMLTLGLGVSSAALWGQALNW*ERCHNT
Trigger: AGTGTTATGACATCGTTCCAACCAGTTCAAAGCTTG...GCCCCAAAGTGCTGCTGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp AGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCAAGTTCTCCTGCGCGGCAAAGAAGGCCTTTTaGACTTGCAACGTAGTGTCG +
Preference number: 5 (lower is better)
Translates to: SVHEANRDPETLFKFSCAAKKAF*TCNVVS
Trigger: CGACACTACGTTGCAAGTCAAAAAGGCCTTCTTTGC...CGCGCAGGAGAACTTGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp AGCGGCGGTGACATATTGCGTTTGGACATAAGGCACCGTGATCTGGACGTGCCGAAAAGCTGGAGGAACTaGAGGATTCTTTTGTGGGTA +
Preference number: 5 (lower is better)
Translates to: SGGDILRLDIRHRDLDVPKSWRN*RILLWV
Trigger: TACCCACAAAAGAATCCTCAAGTTCCTCCAGCTTTT...CGGCACGTCCAGATCACGGTGCCTTATGTCCAAACGCAATATGTCACCGCCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp CTTCTATTGCAGCCAGTGTTCATGAGGCAAACCGTGACCCCGAGACTTTGTTCACTGGGTGCTTCGGTTTaGGTCCTTGGGTTTCTTGGT +
Preference number: 5 (lower is better)
Translates to: LLLQPVFMRQTVTPRLCSLGASV*VLGFLG
Trigger: ACCAAGAAACCCAAGGACCAAAACCGAAGCACCCAG...TGAACAAAGTCTCGGGGTCACGGTTTGCCTCATGAACACTGGCTGCAATAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS CCA 90 bp CCGTCTCTCCACGAAGATGTTCAAGGCTTTGATGATGGGAGTGTCTaGGTGAATGAAGGCAATATTGTGGTACGTTCCGATTCCAAGCTC +
Preference number: 5 (lower is better)
Translates to: PSLHEDVQGFDDGSV*VNEGNIVVRSDSKL
Trigger: GAGCTTGGAATCGGAACGTACCACAATATTGCCTTCATTCACCCAGACACTCCCATCATCAAAGCCTTGAACATCTTCGTGGAGAGACGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
ENSMUST00000150135.8
CDS-3UTR CAA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGAGGCTAGGGTTCTTTTaGCCACTGCTCCCGCCCGGG +
Preference number: 5 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTRLGFF*PLLPPG
Trigger: CCCGGGCGGGAGCAGTGGCAAAAAGAACCCTAGCCT...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS TCA 90 bp CTCTCCACGAAGATGTTCAAGGCTTTGATGATGGGAGTGTCTGGGTaGATGAAGGCAATATTGTGGTACGTTCCGATTCCAAGCTCATCC +
Preference number: 5 (lower is better)
Translates to: LSTKMFKALMMGVSG*MKAILWYVPIPSSS
Trigger: GGATGAGCTTGGAATCGGAACGTACCACAATATTGCCTTCATTCACCCAGACACTCCCATCATCAAAGCCTTGAACATCTTCGTGGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
ENSMUST00000150135.8
CDS-3UTR CAA 90 bp AAGACGTCTTCCGTTACTTCTTCCCTGCGACCACAGCCTGTTTTCATAAACGTTACCTCTTTCTTCTTCTaGGTGTCCATGGCTGCGCTT +
Preference number: 5 (lower is better)
Translates to: KTSSVTSSLRPQPVFINVTSFFF*VSMAAL
Trigger: AAGCGCAGCCATGGACACCAAGAAGAAGAAAGAGGT...AACGTTTATGAAAACAGGCTGTGGTCGCAGGGAAGAAGTAACGGAAGACGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS-3UTR CAA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACTCACTTGGGTGGGTGTaGACGGAGAAGAGGAGACGC +
Preference number: 5 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNSLGWV*TEKRRR
Trigger: GCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTGA...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CAA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGTCACTTGGGTGGGTGTaGACGGAGAAGAGGAGACGC +
Preference number: 5 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTSLGWV*TEKRRR
Trigger: GCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTGA...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS-3UTR CAA 90 bp AGAGACTGGGTAAAAGGTCTGAAGATGCTCACACTTGGGCTGGGTGTCTCTTCAAAAAGCTGGAGGAACTaGAGGATTCTTTTGTGGGTA +
Preference number: 5 (lower is better)
Translates to: RDWVKGLKMLTLGLGVSSKSWRN*RILLWV
Trigger: TACCCACAAAAGAATCCTCAAGTTCCTCCAGCTTTT...TGAAGAGACACCCAGCCCAAGTGTGAGCATCTTCAGACCTTTTACCCAGTCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS TCA 90 bp CAGCATCGAAGAGGCTCGCATCTGGAGAGATGTTCACCAAAGGCTTaGAGGTTTCTTGTAAGTACAACTCCCTCCACGTTTCAATCTTAT +
Preference number: 5 (lower is better)
Translates to: QHRRGSHLERCSPKA*RFLVSTTPSTFQSY
Trigger: ATAAGATTGAAACGTGGAGGGAGTTGTACTTACAAGAAACCTTCAAGCCTTTGGTGAACATCTCTCCAGATGCGAGCCTCTTCGATGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
ENSMUST00000131486.2
ENSMUST00000150135.8
CDS-3UTR CAA 90 bp AAGACGTCTTCCGTTACTTCTTCCCTGCGACCACAGCCTGTTTTCATAAACGTTCGAAGACAACAAGCTTaGAACTGGTTGGAACGATGT +
Preference number: 5 (lower is better)
Translates to: KTSSVTSSLRPQPVFINVRRQQA*NWLERC
Trigger: ACATCGTTCCAACCAGTTCAAAGCTTGTTGTCTTCG...AACGTTTATGAAAACAGGCTGTGGTCGCAGGGAAGAAGTAACGGAAGACGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp CACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTATCTGTCTCCTTCTGTTaGGCACCTGCTGGTGTGAGG +
Preference number: 5 (lower is better)
Translates to: HNKSYKRLVSGHTNIMSLSVSFC*APAGVR
Trigger: CCTCACACCAGCAGGTGCCAAACAGAAGGAGACAGA...TAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACTTTTATTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp ACTTTCTGTCACCTGTTCCATCCCAGTGACTTCTTTGAAATGAAAAGTAGTACTCTTCGGTTTTGGTCCTaGGGTTTCTTGGTGCCCCTC +
Preference number: 5 (lower is better)
Translates to: TFCHLFHPSDFFEMKSSTLRFWS*GFLVPL
Trigger: GAGGGGCACCAAGAAACCCAAGGACCAAAACCGAAG...AGTACTACTTTTCATTTCAAAGAAGTCACTGGGATGGAACAGGTGACAGAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS TCA 90 bp GCTTTGAACTGGTTGGAACGATGTCATAACACTTGTGTGACCTCATaGATCGCATATAAACGCCACTTTCTGAGTCTTCTTCCTCCTGGA +
Preference number: 5 (lower is better)
Translates to: ALNWLERCHNTCVTS*IAYKRHFLSLLPPG
Trigger: TCCAGGAGGAAGAAGACTCAGAAAGTGGCGTTTATATGCGATTCATGAGGTCACACAAGTGTTATGACATCGTTCCAACCAGTTCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000114975.8
CDS TCA 90 bp GCTTTGAACTGGTTGGAACGATGTCATAACACTTGTGTGACCTCATaGATCGCATATAAACGCCACTTTCTGAGTCTTCTGCTTCCTCCT +
Preference number: 5 (lower is better)
Translates to: ALNWLERCHNTCVTS*IAYKRHFLSLLLPP
Trigger: AGGAGGAAGCAGAAGACTCAGAAAGTGGCGTTTATATGCGATTCATGAGGTCACACAAGTGTTATGACATCGTTCCAACCAGTTCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076306.12
ENSMUST00000150135.8
CDS-3UTR CAA 90 bp AAGACGTCTTCCGTTACTTCTTCCCTGCGACCACAGCCTGTTTTCATAAACGTTGTGATGTCCAAGTTATaGTACGTTTTCTCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: KTSSVTSSLRPQPVFINVVMSKL*YVFSAA
Trigger: TGCTGCTGAGAAAACGTACAATAACTTGGACATCAC...AACGTTTATGAAAACAGGCTGTGGTCGCAGGGAAGAAGTAACGGAAGACGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp TGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACAGGTCTGAGGGCAGTCGAAGACAACAAGCTTaGAACTGGTTGGAACGATGT +
Preference number: 5 (lower is better)
Translates to: CTLMTYSIENPSDRSEGSRRQQA*NWLERC
Trigger: ACATCGTTCCAACCAGTTCAAAGCTTGTTGTCTTCG...ACTGCCCTCAGACCTGTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGGCAAAGAAGGCCTTTTaGACTTGCAACGTAGTGTCG +
Preference number: 5 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTAKKAF*TCNVVS
Trigger: CGACACTACGTTGCAAGTCAAAAAGGCCTTCTTTGC...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp AGAGATTTTCCACTTGAGAGAACAATCAAGGTTTTATTCGTAGGTATGGTGACGAAGATGTTCAAGGCTTaGATGATGGGAGTGTCTGGG +
Preference number: 5 (lower is better)
Translates to: RDFPLERTIKVLFVGMVTKMFKA*MMGVSG
Trigger: CCCAGACACTCCCATCATCAAAGCCTTGAACATCTT...CGTCACCATACCTACGAATAAAACCTTGATTGTTCTCTCAAGTGGAAAATCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp TGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACAGGTCTGAGGGCAGTGTGATGTCCAAGTTATaGTACGTTTTCTCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: CTLMTYSIENPSDRSEGSVMSKL*YVFSAA
Trigger: TGCTGCTGAGAAAACGTACAATAACTTGGACATCAC...ACTGCCCTCAGACCTGTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp TATTTCAGGACACAGTGCACTTTAATGACATACAGCATTGAAAATCCTTCAGACGCAAAGAAGGCCTTTTaGACTTGCAACGTAGTGTCG +
Preference number: 5 (lower is better)
Translates to: YFRTQCTLMTYSIENPSDAKKAF*TCNVVS
Trigger: CGACACTACGTTGCAAGTCAAAAAGGCCTTCTTTGC...GTCTGAAGGATTTTCAATGCTGTATGTCATTAAAGTGCACTGTGTCCTGAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp AGTTACAAGCGTCTTGTCAGCGGTCACACAAACATCATGAGTTTACATTTCAACGTGATGTCCAAGTTATaGTACGTTTTCTCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: SYKRLVSGHTNIMSLHFNVMSKL*YVFSAA
Trigger: TGCTGCTGAGAAAACGTACAATAACTTGGACATCAC...GTTGAAATGTAAACTCATGATGTTTGTGTGACCGCTGACAAGACGCTTGTAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS-3UTR CAA 90 bp GACAATACTGTTTTATGTGTCACAATAAAAGTTACAAGCGTCTTGTCAGCGGTCCAAGCTTTGAACTGGTaGGAACGATGTCATAACACT +
Preference number: 5 (lower is better)
Translates to: DNTVLCVTIKVTSVLSAVQALNW*ERCHNT
Trigger: AGTGTTATGACATCGTTCCAACCAGTTCAAAGCTTG...GACCGCTGACAAGACGCTTGTAACTTTTATTGTGACACATAAAACAGTATTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS TCA 90 bp AAGATTAATTACATCAAACTTGGAATAAATATCTACAACTTTTCCTaGCTCATCCACCACAGGCAATGCGGATATCCGTCTCTCCACGAA +
Preference number: 5 (lower is better)
Translates to: KINYIKLGINIYNFS*LIHHRQCGYPSLHE
Trigger: TTCGTGGAGAGACGGATATCCGCATTGCCTGTGGTGGATGAGTCAGGAAAAGTTGTAGATATTTATTCCAAGTTTGATGTAATTAATCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
ENSMUST00000150135.8
CDS TCA 72 bp TATGTCGGGGATGCCAGCGGAGGTCGCGCTGGGCTCTaGAAGGCCAGGCAGAAGCGCTGCCCAGTGTCTGGA +
Preference number: 6 (lower is better)
Translates to: YVGDASGGRAGL*KARQKRCPVSG
Trigger: TCCAGACACTGGGCAGCGCTTCTGCCTGGCCTTTCAGAGCCCAGCGCGACCTCCGCTGGCATCCCCGACATA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS CCA 72 bp ACGGGAACACAGTTTTGGGAGAGCCAGGGCTCGTCTTaGGCCTCACGGGAGCAGACACAGGGCTGGAGGGCC +
Preference number: 6 (lower is better)
Translates to: TGTQFWESQGSS*ASREQTQGWRA
Trigger: GGCCCTCCAGCCCTGTGTCTGCTCCCGTGAGGCCCAAGACGAGCCCTGGCTCTCCCAAAACTGTGTTCCCGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CAA 72 bp AACGGGAACACAGTTTTGGGAGAGCCAGGGCTCGTCTaGGGCCTCACGGGAGCAGACACAGGGCTGGAGGGC +
Preference number: 6 (lower is better)
Translates to: NGNTVLGEPGLV*GLTGADTGLEG
Trigger: GCCCTCCAGCCCTGTGTCTGCTCCCGTGAGGCCCAAGACGAGCCCTGGCTCTCCCAAAACTGTGTTCCCGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS GCA 72 bp GCTGCCCAGTGTCTGGAGGGGACGAGGAAGCATAGATaGGGCTCTCTGGGCGTTCAGGCTCCTGCTTGTAGG +
Preference number: 6 (lower is better)
Translates to: AAQCLEGTRKHR*GSLGVQAPACR
Trigger: CCTACAAGCAGGAGCCTGAACGCCCAGAGAGCCGCATCTATGCTTCCTCGTCCCCTCCAGACACTGGGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS GCA 72 bp CACCGCAGTTCTCAAAGGAGCATGGTATGTCGGGGATaGCAGCGGAGGTCGCGCTGGGCTCTGAAAGGCCAG +
Preference number: 6 (lower is better)
Translates to: HRSSQRSMVCRG*QRRSRWALKGQ
Trigger: CTGGCCTTTCAGAGCCCAGCGCGACCTCCGCTGGCATCCCCGACATACCATGCTCCTTTGAGAACTGCGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS CCA 72 bp GAGGGGACTCCTGGTAGGAGAACGGGAACACAGTTTTaGGAGAGCCAGGGCTCGTCTTGGGCCTCACGGGAG +
Preference number: 6 (lower is better)
Translates to: EGTPGRRTGTQF*ESQGSSWASRE
Trigger: CTCCCGTGAGGCCCAAGACGAGCCCTGGCTCTCCCAAAACTGTGTTCCCGTTCTCCTACCAGGAGTCCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CCA 72 bp GTCTGGAGGGGACGAGGAAGCATAGATGCGGCTCTCTaGGCGTTCAGGCTCCTGCTTGTAGGACTCCAGGGG +
Preference number: 6 (lower is better)
Translates to: VWRGRGSIDAAL*AFRLLLVGLQG
Trigger: CCCCTGGAGTCCTACAAGCAGGAGCCTGAACGCCCAGAGAGCCGCATCTATGCTTCCTCGTCCCCTCCAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS CCA 72 bp GCTCTGAAAGGCCAGGCAGAAGCGCTGCCCAGTGTCTaGAGGGGACGAGGAAGCATAGATGCGGCTCTCTGG +
Preference number: 6 (lower is better)
Translates to: ALKGQAEALPSV*RGRGSIDAALW
Trigger: CCAGAGAGCCGCATCTATGCTTCCTCGTCCCCTCCAGACACTGGGCAGCGCTTCTGCCTGGCCTTTCAGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
CDS CCA 72 bp CCGACTGGCGCCGCTGGGTGCTTCGGTTTTGGTCCTTaGGTTTCTTGGTGCCCCTCAGACTTCCAAAGCGCT +
Preference number: 6 (lower is better)
Translates to: PTGAAGCFGFGP*VSWCPSDFQSA
Trigger: AGCGCTTTGGAAGTCTGAGGGGCACCAAGAAACCCAAGGACCAAAACCGAAGCACCCAGCGGCGCCAGTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS CAA 72 bp TCCGACTGGCGCCGCTGGGTGCTTCGGTTTTGGTCCTaGGGTTTCTTGGTGCCCCTCAGACTTCCAAAGCGC +
Preference number: 6 (lower is better)
Translates to: SDWRRWVLRFWS*GFLVPLRLPKR
Trigger: GCGCTTTGGAAGTCTGAGGGGCACCAAGAAACCCAAGGACCAAAACCGAAGCACCCAGCGGCGCCAGTCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS CAA 72 bp ATGGGGTTCCGACTGGCGCCGCTGGGTGCTTCGGTTTaGGTCCTTGGGTTTCTTGGTGCCCCTCAGACTTCC +
Preference number: 6 (lower is better)
Translates to: MGFRLAPLGASV*VLGFLGAPQTS
Trigger: GGAAGTCTGAGGGGCACCAAGAAACCCAAGGACCAAAACCGAAGCACCCAGCGGCGCCAGTCGGAACCCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS TCA 72 bp GCGAAGACTCTTTGGATGAGGAGCGGAAGATCCCACTaGAGCTCATCCGGCGTGGAGAGCGTGGAGGGGACT +
Preference number: 6 (lower is better)
Translates to: AKTLWMRSGRSH*SSSGVESVEGT
Trigger: AGTCCCCTCCACGCTCTCCACGCCGGATGAGCTTCAGTGGGATCTTCCGCTCCTCATCCAAAGAGTCTTCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS GCA 72 bp AGGAGCGGCATGGCAAAGGAACTCAGGTCCGGAATGTaGACTCGCAGTGACCGCCTCTTCAGGCTAGGGTTC +
Preference number: 6 (lower is better)
Translates to: RSGMAKELRSGM*TRSDRLFRLGF
Trigger: GAACCCTAGCCTGAAGAGGCGGTCACTGCGAGTGCACATTCCGGACCTGAGTTCCTTTGCCATGCCGCTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CCA 72 bp GAAGATCCCACTGAAGCTCATCCGGCGTGGAGAGCGTaGAGGGGACTCCTGGTAGGAGAACGGGAACACAGT +
Preference number: 6 (lower is better)
Translates to: EDPTEAHPAWRA*RGLLVGEREHS
Trigger: ACTGTGTTCCCGTTCTCCTACCAGGAGTCCCCTCCACGCTCTCCACGCCGGATGAGCTTCAGTGGGATCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CAA 90 bp CTGGACCGTGAGAAGAACCGGATGCCCCCAGGAGAGGTAGACGGGTaGGAGTTGGGCGAAGACTCTTTGGATGAGGAGCGGAAGATCCCA +
Preference number: 6 (lower is better)
Translates to: LDREKNRMPPGEVDG*ELGEDSLDEERKIP
Trigger: TGGGATCTTCCGCTCCTCATCCAAAGAGTCTTCGCCCAACTCCAACCCGTCTACCTCTCCTGGGGGCATCCGGTTCTTCTCACGGTCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS TCA 72 bp GGTAGACGGGTTGGAGTTGGGCGAAGACTCTTTGGATaGGGAGCGGAAGATCCCACTGAAGCTCATCCGGCG +
Preference number: 6 (lower is better)
Translates to: GRRVGVGRRLFG*GAEDPTEAHPA
Trigger: CGCCGGATGAGCTTCAGTGGGATCTTCCGCTCCTCATCCAAAGAGTCTTCGCCCAACTCCAACCCGTCTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS TCA 72 bp GGGAAATGGGTGCTGCTTGGTCACTTGGGTGGGTGTTaGCGGAGAAGAGGAGACGCTGGAGGCAAAAAGGCC +
Preference number: 6 (lower is better)
Translates to: GKWVLLGHLGGC*RRRGDAGGKKA
Trigger: GGCCTTTTTGCCTCCAGCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCACCCATTTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS CCA 72 bp GTGTTGACGGAGAAGAGGAGACGCTGGAGGTTTTTCTaGACCGTGAGAAGAACCGGATGCCCCCAGGAGAGG +
Preference number: 6 (lower is better)
Translates to: VLTEKRRRWRFF*TVRRTGCPQER
Trigger: CCTCTCCTGGGGGCATCCGGTTCTTCTCACGGTCCAGAAAAACCTCCAGCGTCTCCTCTTCTCCGTCAACAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CCA 72 bp ACTCCAGGGGAAATGGGTGCTGCTTGGTCACTTGGGTaGGTGTTGACGGAGAAGAGGAGACGCTGGAGGCAA +
Preference number: 6 (lower is better)
Translates to: TPGEMGAAWSLG*VLTEKRRRWRQ
Trigger: TTGCCTCCAGCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCACCCATTTCCCCTGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076306.12
CDS CCA 72 bp ACTCCAGGGGAAATGGGTGCTGCTTGGTCACTTGGGTaGGTGTTGACGGAGAAGAGGAGACGCTGGAGGTTT +
Preference number: 6 (lower is better)
Translates to: TPGEMGAAWSLG*VLTEKRRRWRF
Trigger: AAACCTCCAGCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCACCCATTTCCCCTGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS TCA 72 bp GGCAAAGGAACTCAGGTCCGGAATGTGCACTCGCAGTaGCCGCCTCTTCAGGCTAGGGTTCTTTTTGCCACT +
Preference number: 6 (lower is better)
Translates to: GKGTQVRNVHSQ*PPLQARVLFAT
Trigger: AGTGGCAAAAAGAACCCTAGCCTGAAGAGGCGGTCACTGCGAGTGCACATTCCGGACCTGAGTTCCTTTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS GCA 72 bp CTGCACTTCACCACACCCTCAAAATACTGCGAGCGGTaGTGCAGGGCCTGGGTCACTGTGATGTCCAAGTTA +
Preference number: 6 (lower is better)
Translates to: LHFTTPSKYCER*CRAWVTVMSKL
Trigger: TAACTTGGACATCACAGTGACCCAGGCCCTGCAGCACCGCTCGCAGTATTTTGAGGGTGTGGTGAAGTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS CCA 72 bp TCACTTGGGTGGGTGTTGACGGAGAAGAGGAGACGCTaGAGGTTTTTCTGGACCGTGAGAAGAACCGGATGC +
Preference number: 6 (lower is better)
Translates to: SLGWVLTEKRRR*RFFWTVRRTGC
Trigger: GCATCCGGTTCTTCTCACGGTCCAGAAAAACCTCCAGCGTCTCCTCTTCTCCGTCAACACCCACCCAAGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CAA 72 bp GGAGAGGTAGACGGGTTGGAGTTGGGCGAAGACTCTTaGGATGAGGAGCGGAAGATCCCACTGAAGCTCATC +
Preference number: 6 (lower is better)
Translates to: GEVDGLELGEDS*DEERKIPLKLI
Trigger: GATGAGCTTCAGTGGGATCTTCCGCTCCTCATCCAAAGAGTCTTCGCCCAACTCCAACCCGTCTACCTCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS GCA 72 bp CACTTCACCACACCCTCAAAATACTGCGAGCGGTGCTaGAGGGCCTGGGTCACTGTGATGTCCAAGTTATTG +
Preference number: 6 (lower is better)
Translates to: HFTTPSKYCERC*RAWVTVMSKLL
Trigger: CAATAACTTGGACATCACAGTGACCCAGGCCCTGCAGCACCGCTCGCAGTATTTTGAGGGTGTGGTGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS GCA 72 bp TCCTGTCCACGATGGTCTCCAGTGTTTCCAGCTTACTaGACTTCACCACACCCTCAAAATACTGCGAGCGGT +
Preference number: 6 (lower is better)
Translates to: SCPRWSPVFPAY*TSPHPQNTASG
Trigger: ACCGCTCGCAGTATTTTGAGGGTGTGGTGAAGTGCAGTAAGCTGGAAACACTGGAGACCATCGTGGACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS CCA 72 bp TTTCTGAATTCTCCACATCTCCATCCAGGAGCGGCATaGCAAAGGAACTCAGGTCCGGAATGTGCACTCGCA +
Preference number: 6 (lower is better)
Translates to: FLNSPHLHPGAA*QRNSGPECALA
Trigger: TGCGAGTGCACATTCCGGACCTGAGTTCCTTTGCCATGCCGCTCCTGGATGGAGATGTGGAGAATTCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS TCA 72 bp AATACTGCGAGCGGTGCTGCAGGGCCTGGGTCACTGTaGTGTCCAAGTTATTGTACGTTTTCTCAGCAGCAA +
Preference number: 6 (lower is better)
Translates to: NTASGAAGPGSL*CPSYCTFSQQQ
Trigger: TTGCTGCTGAGAAAACGTACAATAACTTGGACATCACAGTGACCCAGGCCCTGCAGCACCGCTCGCAGTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS GCA 72 bp CCTGAGCTGAAGGGACTGTCCACCTTCCGAGATGAATaGTTTTCTGAATTCTCCACATCTCCATCCAGGAGC +
Preference number: 6 (lower is better)
Translates to: PELKGLSTFRDE*FSEFSTSPSRS
Trigger: GCTCCTGGATGGAGATGTGGAGAATTCAGAAAAGCATTCATCTCGGAAGGTGGACAGTCCCTTCAGCTCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030784.14
CDS CAA 90 bp TGCGAGCGGTGCTGCAGGGCCTGGGTCACTGTGATGTCCAAGTTATaGTACGTTTTCTCAGCAGCAAGATTAATTACATCAAACTTGGAA +
Preference number: 6 (lower is better)
Translates to: CERCCRAWVTVMSKL*YVFSAARLITSNLE
Trigger: TTCCAAGTTTGATGTAATTAATCTTGCTGCTGAGAAAACGTACAATAACTTGGACATCACAGTGACCCAGGCCCTGCAGCACCGCTCGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
CDS CCA 72 bp GATCAACGAGTATACAGCATCGAAGAGGCTCGCATCTaGAGAGATGTTCACCAAAGGCTTGAAGGTTTCTTG +
Preference number: 6 (lower is better)
Translates to: DQRVYSIEEARI*RDVHQRLEGFL
Trigger: CAAGAAACCTTCAAGCCTTTGGTGAACATCTCTCCAGATGCGAGCCTCTTCGATGCTGTATACTCGTTGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
ENSMUST00000131486.2
ENSMUST00000150135.8
CDS CCA 72 bp CACGAAGATGTTCAAGGCTTTGATGATGGGAGTGTCTaGGTGAATGAAGGCAATATTGTGGTACGTTCCGAT +
Preference number: 6 (lower is better)
Translates to: HEDVQGFDDGSV*VNEGNIVVRSD
Trigger: ATCGGAACGTACCACAATATTGCCTTCATTCACCCAGACACTCCCATCATCAAAGCCTTGAACATCTTCGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
ENSMUST00000150135.8
CDS TCA 72 bp AAGATGTTCAAGGCTTTGATGATGGGAGTGTCTGGGTaGATGAAGGCAATATTGTGGTACGTTCCGATTCCA +
Preference number: 6 (lower is better)
Translates to: KMFKALMMGVSG*MKAILWYVPIP
Trigger: TGGAATCGGAACGTACCACAATATTGCCTTCATTCACCCAGACACTCCCATCATCAAAGCCTTGAACATCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
ENSMUST00000131486.2
ENSMUST00000150135.8
CDS TCA 72 bp TGGTTGGAACGATGTCATAACACTTGTGTGACCTCATaGATCGCATATAAACGCCACTTTCTGAGTCTTCTG +
Preference number: 6 (lower is better)
Translates to: WLERCHNTCVTS*IAYKRHFLSLL
Trigger: CAGAAGACTCAGAAAGTGGCGTTTATATGCGATTCATGAGGTCACACAAGTGTTATGACATCGTTCCAACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076306.12
ENSMUST00000150135.8
CDS TCA 72 bp TGGTTGGAACGATGTCATAACACTTGTGTGACCTCATaGATCGCATATAAACGCCACTTTCTGAGTCTTCTT +
Preference number: 6 (lower is better)
Translates to: WLERCHNTCVTS*IAYKRHFLSLL
Trigger: AAGAAGACTCAGAAAGTGGCGTTTATATGCGATTCATGAGGTCACACAAGTGTTATGACATCGTTCCAACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030784.14
ENSMUST00000114975.8
CDS TCA 72 bp TACATCAAACTTGGAATAAATATCTACAACTTTTCCTaGCTCATCCACCACAGGCAATGCGGATATCCGTCT +
Preference number: 6 (lower is better)
Translates to: YIKLGINIYNFS*LIHHRQCGYPS
Trigger: AGACGGATATCCGCATTGCCTGTGGTGGATGAGTCAGGAAAAGTTGTAGATATTTATTCCAAGTTTGATGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
ENSMUST00000150135.8
CDS CCA 72 bp TATATAAAGTGCGTTCCCACTGATAGGGTCAATAACTaGCAATCTGTGGATTTTATTTTTGATCAACGAGTA +
Preference number: 6 (lower is better)
Translates to: YIKCVPTDRVNN*QSVDFIFDQRV
Trigger: TACTCGTTGATCAAAAATAAAATCCACAGATTGCCAGTTATTGACCCTATCAGTGGGAACGCACTTTATATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000030784.14
ENSMUST00000076306.12
ENSMUST00000114975.8
ENSMUST00000131486.2
ENSMUST00000150135.8