Pregenerated sensors for PRKACA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005469Ensembl transcript IDs: ENSMUST00000005606.8, ENSMUST00000211558.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTCTTTCCGTACCCTGCCCCTGGATACACCAGCAAGATTGGGTATaGCTGGAGCTAAGAAATTCATTGAAAACAGGCAGGGAAGGGTGG | + |
|
Preference number: 1 (lower is better) Translates to: PLSVPCPWIHQQDWV*LELRNSLKTGREGW Trigger: CCACCCTTCCCTGCCTGTTTTCAATGAATTTCTTAGCTCCAGCCATACCCAATCTTGCTGGTGTATCCAGGGGCAGGGTACGGAAAGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| 3UTR-3UTR CCA 90 bp | TTCCGTACCCTGCCCCTGGATACACCAGCAAGATTGGGTATGGCTGGAGCTAAGCCCTTCCCCAGTATCTaGAGCGCTTTCCTGCTCTCC | + |
|
Preference number: 2 (lower is better) Translates to: FRTLPLDTPARLGMAGAKPFPSI*SAFLLS Trigger: GGAGAGCAGGAAAGCGCTCCAGATACTGGGGAAGGG...CTTAGCTCCAGCCATACCCAATCTTGCTGGTGTATCCAGGGGCAGGGTACGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| 3UTR CAA 90 bp | GGGAGGCTAGCAGCTCAGGGCGAGATTCCAAGCCCAGTTCCTTCCTaGACAGGGTCAGTTGGCTACCCGGGTCTCATCAGAATGGATTTA | + |
|
Preference number: 2 (lower is better) Translates to: GRLAAQGEIPSPVPS*TGSVGYPGLIRMDL Trigger: TAAATCCATTCTGATGAGACCCGGGTAGCCAACTGACCCTGTCAAGGAAGGAACTGGGCTTGGAATCTCGCCCTGAGCTGCTAGCCTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| 3UTR TCA 72 bp | CAGCTCAGGGCGAGATTCCAAGCCCAGTTCCTTCCTTaGCAGGGTCAGTTGGCTACCCGGGTCTCATCAGAA | + |
|
Preference number: 3 (lower is better) Translates to: QLRARFQAQFLP*QGQLATRVSSE Trigger: TTCTGATGAGACCCGGGTAGCCAACTGACCCTGTCAAGGAAGGAACTGGGCTTGGAATCTCGCCCTGAGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| 3UTR-3UTR CAA 90 bp | CCGGGTCTCATCAGAATGGATTTAGGGAGTGAGGAGGGTGTTTGGGGAGGGTGGGATACACCAGCAAGATaGGGTATGGCTGGAGCTAAG | + |
|
Preference number: 3 (lower is better) Translates to: PGLIRMDLGSEEGVWGGWDTPAR*GMAGAK Trigger: CTTAGCTCCAGCCATACCCAATCTTGCTGGTGTATC...CCACCCTCCCCAAACACCCTCCTCACTCCCTAAATCCATTCTGATGAGACCCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| 3UTR CCA 72 bp | GAGAAAAAGCACAATCAGACTTGGGGTTGCAGTGAGTaGGGACGCACGGCAAGAGGTGATGGACAGCTGACA | + |
|
Preference number: 3 (lower is better) Translates to: EKKHNQTWGCSE*GRTARGDGQLT Trigger: TGTCAGCTGTCCATCACCTCTTGCCGTGCGTCCCCACTCACTGCAACCCCAAGTCTGATTGTGCTTTTTCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| 3UTR CCA 72 bp | GATTCCAAGCCCAGTTCCTTCCTTGACAGGGTCAGTTaGCTACCCGGGTCTCATCAGAATGGATTTAGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: DSKPSSFLDRVS*LPGSHQNGFRE Trigger: CTCCCTAAATCCATTCTGATGAGACCCGGGTAGCCAACTGACCCTGTCAAGGAAGGAACTGGGCTTGGAATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| 3UTR-3UTR CAA 90 bp | GGATGGGGGAGGCTTCTTAAGGGGGCTGATGCACAGGACAATTGGCATGAGACCGAGCTAAGAAATTCATaGAAAACAGGCAGGGAAGGG | + |
|
Preference number: 3 (lower is better) Translates to: GWGRLLKGADAQDNWHETELRNS*KTGREG Trigger: CCCTTCCCTGCCTGTTTTCAATGAATTTCTTAGCTC...GGTCTCATGCCAATTGTCCTGTGCATCAGCCCCCTTAAGAAGCCTCCCCCATCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| 3UTR CCA 72 bp | CAGGTCATAAAATCTCCCTTTCCAGGTAGGGCTGCATaGAAGGGAAGGTTGGCGTTACTGTTCGTTCATCCT | + |
|
Preference number: 3 (lower is better) Translates to: QVIKSPFPGRAA*KGRLALLFVHP Trigger: AGGATGAACGAACAGTAACGCCAACCTTCCCTTCCATGCAGCCCTACCTGGAAAGGGAGATTTTATGACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| 3UTR CCA 72 bp | CTTTCCGTACCCTGCCCCTGGATACACCAGCAAGATTaGGTATGGCTGGAGCTAAGAAATTCATTGAAAACA | + |
|
Preference number: 3 (lower is better) Translates to: LSVPCPWIHQQD*VWLELRNSLKT Trigger: TGTTTTCAATGAATTTCTTAGCTCCAGCCATACCCAATCTTGCTGGTGTATCCAGGGGCAGGGTACGGAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR GCA 90 bp | TTCCGTACCCTGCCCCTGGATACACCAGCAAGATTGGGTATGGCTGGAGCTAAGCGCTCTCCTGCTCGCTaGCCTTCTTGGCGGCGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: FRTLPLDTPARLGMAGAKRSPAR*PSWRRR Trigger: CCGCCGCCGCCAAGAAGGGCAGCGAGCAGGAGAGCG...CTTAGCTCCAGCCATACCCAATCTTGCTGGTGTATCCAGGGGCAGGGTACGGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR TCA 90 bp | CCCTTCCCCAGTATCTGGAGCGCTTTCCTGCTCTCCTTAACCCTGGGGGTGTGGTCAGGTCCCGGTAGATaGGGTCCAGGGAGTGCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: PFPSIWSAFLLSLTLGVWSGPGR*GPGSAD Trigger: ATCTGCACTCCCTGGACCTCATCTACCGGGACCTGA...CCACACCCCCAGGGTTAAGGAGAGCAGGAAAGCGCTCCAGATACTGGGGAAGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR TCA 90 bp | TTCCGTACCCTGCCCCTGGATACACCAGCAAGATTGGGTATGGCTGGAGCTAAGGGGCATGGGGCTCGCTaGACCTTCCAATCCGCCGTA | + |
|
Preference number: 4 (lower is better) Translates to: FRTLPLDTPARLGMAGAKGHGAR*TFQSAV Trigger: TACGGCGGATTGGAAGGTTCAGCGAGCCCCATGCCC...CTTAGCTCCAGCCATACCCAATCTTGCTGGTGTATCCAGGGGCAGGGTACGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR TCA 90 bp | TATCTGGAGCGCTTTCCTGCTCTCCTTAACCCTGGGGGTGTGGAGTGGATGTTAGGGCATGGGGCTCGCTaGACCTTCCAATCCGCCGTA | + |
|
Preference number: 4 (lower is better) Translates to: YLERFPALLNPGGVEWMLGHGAR*TFQSAV Trigger: TACGGCGGATTGGAAGGTTCAGCGAGCCCCATGCCC...TAACATCCACTCCACACCCCCAGGGTTAAGGAGAGCAGGAAAGCGCTCCAGATA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS-3UTR CCA 90 bp | AGGAGGCTGAATTTGGGGCCCTCTTTCCGTACCCTGCCCCTGGATACACCAGCAGTCAGCGAAGAAGGGTaGGTAACCAGCAGCCATCTC | + |
|
Preference number: 4 (lower is better) Translates to: RRLNLGPSFRTLPLDTPAVSEEG*VTSSHL Trigger: GAGATGGCTGCTGGTTACCCACCCTTCTTCGCTGAC...TGCTGGTGTATCCAGGGGCAGGGTACGGAAAGAGGGCCCCAAATTCAGCCTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR GCA 90 bp | TATCTGGAGCGCTTTCCTGCTCTCCTTAACCCTGGGGGTGTGGAGTGGATGTTATTGGTGAGATCCACCTaGAGAAGGTTCCGCAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: YLERFPALLNPGGVEWMLLVRST*RRFRSR Trigger: CCTGCTGCGGAACCTTCTGCAGGTGGATCTCACCAA...TAACATCCACTCCACACCCCCAGGGTTAAGGAGAGCAGGAAAGCGCTCCAGATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS-3UTR CCA 90 bp | TATCTGGAGCGCTTTCCTGCTCTCCTTAACCCTGGGGGTGTGGAGTGGATGTTAGTCAGCGAAGAAGGGTaGGTAACCAGCAGCCATCTC | + |
|
Preference number: 4 (lower is better) Translates to: YLERFPALLNPGGVEWMLVSEEG*VTSSHL Trigger: GAGATGGCTGCTGGTTACCCACCCTTCTTCGCTGAC...TAACATCCACTCCACACCCCCAGGGTTAAGGAGAGCAGGAAAGCGCTCCAGATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS-3UTR GCA 90 bp | TATCTGGAGCGCTTTCCTGCTCTCCTTAACCCTGGGGGTGTGGAGTGGATGTTATTCCCACTCTCCTTGTaGTTCACCAGCATCACTCGC | + |
|
Preference number: 4 (lower is better) Translates to: YLERFPALLNPGGVEWMLFPLSL*FTSITR Trigger: GCGAGTGATGCTGGTGAAGCACAAGGAGAGTGGGAA...TAACATCCACTCCACACCCCCAGGGTTAAGGAGAGCAGGAAAGCGCTCCAGATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS-3UTR GCA 90 bp | TATCTGGAGCGCTTTCCTGCTCTCCTTAACCCTGGGGGTGTGGAGTGGATGTTAATGAGGTCCAGGGAGTaGAGATACTCAAAGGTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: YLERFPALLNPGGVEWMLMRSRE*RYSKVR Trigger: CCTGACCTTTGAGTATCTGCACTCCCTGGACCTCAT...TAACATCCACTCCACACCCCCAGGGTTAAGGAGAGCAGGAAAGCGCTCCAGATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS-3UTR GCA 90 bp | GGCTGCATGGAAGGGAAGGTTGGCGTTACTGTTCGTTCATCCTTAGTATCCAGTTTGGTGAGATCCACCTaGAGAAGGTTCCGCAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: GCMEGKVGVTVRSSLVSSLVRST*RRFRSR Trigger: CCTGCTGCGGAACCTTCTGCAGGTGGATCTCACCAA...ACTGGATACTAAGGATGAACGAACAGTAACGCCAACCTTCCCTTCCATGCAGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR CCA 90 bp | GGCTGCATGGAAGGGAAGGTTGGCGTTACTGTTCGTTCATCCTTAGTATCCAGTAGAGCTGAAGTGGGATaGGAACCGCACCTTCCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: GCMEGKVGVTVRSSLVSSRAEVG*EPHLPR Trigger: TCTGGGAAGGTGCGGTTCCCATCCCACTTCAGCTCT...ACTGGATACTAAGGATGAACGAACAGTAACGCCAACCTTCCCTTCCATGCAGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR TCA 90 bp | TATCTGGAGCGCTTTCCTGCTCTCCTTAACCCTGGGGGTGTGGAGTGGATGTTACGGTGCCAAGGGTCTTaGTTCTATCAAACTGATCCA | + |
|
Preference number: 4 (lower is better) Translates to: YLERFPALLNPGGVEWMLRCQGS*FYQTDP Trigger: TGGATCAGTTTGATAGAATCAAGACCCTTGGCACCG...TAACATCCACTCCACACCCCCAGGGTTAAGGAGAGCAGGAAAGCGCTCCAGATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS-3UTR GCA 90 bp | CACCAGCAAGATTGGGTATGGCTGGAGCTAAGAAATTCATTGAAAACAGGCAGGTCTTTCACGCTCTCCTaGTCGCTGCCCTTCTTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: HQQDWVWLELRNSLKTGRSFTLS*SLPFLA Trigger: CGCCAAGAAGGGCAGCGAGCAGGAGAGCGTGAAAGA...CCTGCCTGTTTTCAATGAATTTCTTAGCTCCAGCCATACCCAATCTTGCTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR CCA 90 bp | TTCCGTACCCTGCCCCTGGATACACCAGCAAGATTGGGTATGGCTGGAGCTAAGTGTCTAAGATCTTCATaGCGTAGTGGTTCCCACTCT | + |
|
Preference number: 4 (lower is better) Translates to: FRTLPLDTPARLGMAGAKCLRSS*RSGSHS Trigger: AGAGTGGGAACCACTACGCCATGAAGATCTTAGACA...CTTAGCTCCAGCCATACCCAATCTTGCTGGTGTATCCAGGGGCAGGGTACGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR GCA 90 bp | CACCAGCAAGATTGGGTATGGCTGGAGCTAAGAAATTCATTGAAAACAGGCAGGGGGAAGTTGACGGCCTaGAGGATGCGCTTCTCATTC | + |
|
Preference number: 4 (lower is better) Translates to: HQQDWVWLELRNSLKTGRGKLTA*RMRFSF Trigger: GAATGAGAAGCGCATCCTGCAGGCCGTCAACTTCCC...CCTGCCTGTTTTCAATGAATTTCTTAGCTCCAGCCATACCCAATCTTGCTGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR GCA 90 bp | GGCTGCATGGAAGGGAAGGTTGGCGTTACTGTTCGTTCATCCTTAGTATCCAGTATGAGGTCCAGGGAGTaGAGATACTCAAAGGTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: GCMEGKVGVTVRSSLVSSMRSRE*RYSKVR Trigger: CCTGACCTTTGAGTATCTGCACTCCCTGGACCTCAT...ACTGGATACTAAGGATGAACGAACAGTAACGCCAACCTTCCCTTCCATGCAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR CCA 90 bp | TATCTGGAGCGCTTTCCTGCTCTCCTTAACCCTGGGGGTGTGGAGTGGATGTTATGTCTAAGATCTTCATaGCGTAGTGGTTCCCACTCT | + |
|
Preference number: 4 (lower is better) Translates to: YLERFPALLNPGGVEWMLCLRSS*RSGSHS Trigger: AGAGTGGGAACCACTACGCCATGAAGATCTTAGACA...TAACATCCACTCCACACCCCCAGGGTTAAGGAGAGCAGGAAAGCGCTCCAGATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS-3UTR GCA 90 bp | CACCAGCAAGATTGGGTATGGCTGGAGCTAAGAAATTCATTGAAAACAGGCAGGTTCCCACTCTCCTTGTaGTTCACCAGCATCACTCGC | + |
|
Preference number: 4 (lower is better) Translates to: HQQDWVWLELRNSLKTGRFPLSL*FTSITR Trigger: GCGAGTGATGCTGGTGAAGCACAAGGAGAGTGGGAA...CCTGCCTGTTTTCAATGAATTTCTTAGCTCCAGCCATACCCAATCTTGCTGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR TCA 90 bp | GGTATGGCTGGAGCTAAGAAATTCATTGAAAACAGGCAGGGAAGGGTGGAGAAGCGGTGCCAAGGGTCTTaGTTCTATCAAACTGATCCA | + |
|
Preference number: 4 (lower is better) Translates to: GMAGAKKFIENRQGRVEKRCQGS*FYQTDP Trigger: TGGATCAGTTTGATAGAATCAAGACCCTTGGCACCG...CTTCTCCACCCTTCCCTGCCTGTTTTCAATGAATTTCTTAGCTCCAGCCATACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| 3UTR CAA 72 bp | TCTTTCCGTACCCTGCCCCTGGATACACCAGCAAGATaGGGTATGGCTGGAGCTAAGAAATTCATTGAAAAC | + |
|
Preference number: 4 (lower is better) Translates to: SFRTLPLDTPAR*GMAGAKKFIEN Trigger: GTTTTCAATGAATTTCTTAGCTCCAGCCATACCCAATCTTGCTGGTGTATCCAGGGGCAGGGTACGGAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR CAA 90 bp | GCTCAGGGCGAGATTCCAAGCCCAGTTCCTTCCTTGACAGGGTCAGTTGGCTACTCATTGACCCCGTTCTaGAGGTTCCCAAAGCGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: AQGEIPSPVPSLTGSVGYSLTPF*RFPKRL Trigger: CAAGCGCTTTGGGAACCTCAAGAACGGGGTCAATGA...GTAGCCAACTGACCCTGTCAAGGAAGGAACTGGGCTTGGAATCTCGCCCTGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR CAA 90 bp | TATCTGGAGCGCTTTCCTGCTCTCCTTAACCCTGGGGGTGTGGAGTGGATGTTATGGTTCCCACTCTCCTaGTGCTTCACCAGCATCACT | + |
|
Preference number: 5 (lower is better) Translates to: YLERFPALLNPGGVEWMLWFPLS*CFTSIT Trigger: AGTGATGCTGGTGAAGCACAAGGAGAGTGGGAACCA...TAACATCCACTCCACACCCCCAGGGTTAAGGAGAGCAGGAAAGCGCTCCAGATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS-3UTR CAA 90 bp | CTAGGGTCGGGAAGGAGGCTGAATTTGGGGCCCTCTTTCCGTACCCTGCCCCTGATGTACAGGTTTGAGTaGTCCTTGAAGGAGAATTCA | + |
|
Preference number: 5 (lower is better) Translates to: LGSGRRLNLGPSFRTLPLMYRFE*SLKENS Trigger: TGAATTCTCCTTCAAGGACAACTCAAACCTGTACAT...CAGGGGCAGGGTACGGAAAGAGGGCCCCAAATTCAGCCTCCTTCCCGACCCTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR CAA 90 bp | CACCAGCAAGATTGGGTATGGCTGGAGCTAAGAAATTCATTGAAAACAGGCAGGTGGTTCCCACTCTCCTaGTGCTTCACCAGCATCACT | + |
|
Preference number: 5 (lower is better) Translates to: HQQDWVWLELRNSLKTGRWFPLS*CFTSIT Trigger: AGTGATGCTGGTGAAGCACAAGGAGAGTGGGAACCA...CCTGCCTGTTTTCAATGAATTTCTTAGCTCCAGCCATACCCAATCTTGCTGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005606.8 |
||
| CDS-3UTR CAA 90 bp | TATCTGGAGCGCTTTCCTGCTCTCCTTAACCCTGGGGGTGTGGAGTGGATGTTAATGTACAGGTTTGAGTaGTCCTTGAAGGAGAATTCA | + |
|
Preference number: 5 (lower is better) Translates to: YLERFPALLNPGGVEWMLMYRFE*SLKENS Trigger: TGAATTCTCCTTCAAGGACAACTCAAACCTGTACAT...TAACATCCACTCCACACCCCCAGGGTTAAGGAGAGCAGGAAAGCGCTCCAGATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS TCA 72 bp | GCATCACTCGCCCAAAGGAGCCGGTGCCAAGGGTCTTaGTTCTATCAAACTGATCCAACTGGGCTGTATTCT | + |
|
Preference number: 6 (lower is better) Translates to: ASLAQRSRCQGS*FYQTDPTGLYS Trigger: AGAATACAGCCCAGTTGGATCAGTTTGATAGAATCAAGACCCTTGGCACCGGCTCCTTTGGGCGAGTGATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS CAA 90 bp | CCACCAGCTACATACTCCATGACCATGTACAGGTTTGAGTTGTCCTaGAAGGAGAATTCAAGTTTGACCAGGAACGGGAAGTTGACGGCC | + |
|
Preference number: 6 (lower is better) Translates to: PPATYSMTMYRFELS*KENSSLTRNGKLTA Trigger: GGCCGTCAACTTCCCGTTCCTGGTCAAACTTGAATTCTCCTTCAAGGACAACTCAAACCTGTACATGGTCATGGAGTATGTAGCTGGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||
| CDS CAA 72 bp | ACATACTCCATGACCATGTACAGGTTTGAGTTGTCCTaGAAGGAGAATTCAAGTTTGACCAGGAACGGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: TYSMTMYRFELS*KENSSLTRNGK Trigger: CTTCCCGTTCCTGGTCAAACTTGAATTCTCCTTCAAGGACAACTCAAACCTGTACATGGTCATGGAGTATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005606.8 ENSMUST00000211558.2 |
||