Pregenerated sensors for PRIMA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041669Ensembl transcript IDs: ENSMUST00000074416.10, ENSMUST00000127843.8, ENSMUST00000156176.2
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCCACCTGCCATCCATGTCCACCAGTGTCACCACGGTGCCCTTCTaGCCAGTGGGTCCCAGGGCCTGCAGGTTCACACCACTGCAGCGT | + |
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Preference number: 1 (lower is better) Translates to: VHLPSMSTSVTTVPF*PVGPRACRFTPLQR Trigger: ACGCTGCAGTGGTGTGAACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACATGGATGGCAGGTGGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR GCA 90 bp | CGCCCAATGCGAGACAAGGAGAGTATGGAGATCCCTGGGTGGTGGTaGTGCTCAGGGGCCACATGCAGGGGAGCCTGGCTCAAGCCTGGT | + |
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Preference number: 1 (lower is better) Translates to: RPMRDKESMEIPGWW*CSGATCRGAWLKPG Trigger: ACCAGGCTTGAGCCAGGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTCTCGCATTGGGCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR GCA 90 bp | ACCAGTGTCACCACGGTGCCCTTCTGGCCAGTGGGTCCCAGGGCCTaGAGGTTCACACCACTGCAGCGTTCACATCCACCCCTTTGTGGC | + |
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Preference number: 1 (lower is better) Translates to: TSVTTVPFWPVGPRA*RFTPLQRSHPPLCG Trigger: GCCACAAAGGGGTGGATGTGAACGCTGCAGTGGTGTGAACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR GCA 90 bp | CAGCTCATGTCCACCTGCCATCCATGTCCACCAGTGTCACCACGGTaGCCTTCTGGCCAGTGGGTCCCAGGGCCTGCAGGTTCACACCAC | + |
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Preference number: 1 (lower is better) Translates to: QLMSTCHPCPPVSPR*PSGQWVPGPAGSHH Trigger: GTGGTGTGAACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACATGGATGGCAGGTGGACATGAGCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR GCA 90 bp | GAAGCACGAAGTCCTGGACAGGCCCACGGTCAGCTCATGTCCACCTaGCATCCATGTCCACCAGTGTCACCACGGTGCCCTTCTGGCCAG | + |
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Preference number: 1 (lower is better) Translates to: EARSPGQAHGQLMST*HPCPPVSPRCPSGQ Trigger: CTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACATGGATGGCAGGTGGACATGAGCTGACCGTGGGCCTGTCCAGGACTTCGTGCTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR GCA 90 bp | GTGTTGCACCCCTCGGGGGTGACCAGGGCTAGCCTGGGAAGAGGATaGTTTCTCTTTCAGGAGGCTCGAAGCCCGCGAAGCACGAAGTCC | + |
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Preference number: 1 (lower is better) Translates to: VLHPSGVTRASLGRG*FLFQEARSPRSTKS Trigger: GGACTTCGTGCTTCGCGGGCTTCGAGCCTCCTGAAAGAGAAAGCATCCTCTTCCCAGGCTAGCCCTGGTCACCCCCGAGGGGTGCAACAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR GCA 90 bp | CCAATGCGAGACAAGGAGAGTATGGAGATCCCTGGGTGGTGGTGCTaGTCAGGGGCCACATGCAGGGGAGCCTGGCTCAAGCCTGGTGTC | + |
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Preference number: 1 (lower is better) Translates to: PMRDKESMEIPGWWC*SGATCRGAWLKPGV Trigger: GACACCAGGCTTGAGCCAGGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTCTCGCATTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR CCA 90 bp | ACAGTCAGTGCGCCCAATGCGAGACAAGGAGAGTATGGAGATCCCTaGGTGGTGGTGCTGCTCAGGGGCCACATGCAGGGGAGCCTGGCT | + |
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Preference number: 1 (lower is better) Translates to: TVSAPNARQGEYGDP*VVVLLRGHMQGSLA Trigger: AGCCAGGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTCTCGCATTGGGCGCACTGACTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR CCA 90 bp | TGCCATCCATGTCCACCAGTGTCACCACGGTGCCCTTCTGGCCAGTaGGTCCCAGGGCCTGCAGGTTCACACCACTGCAGCGTTCACATC | + |
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Preference number: 1 (lower is better) Translates to: CHPCPPVSPRCPSGQ*VPGPAGSHHCSVHI Trigger: GATGTGAACGCTGCAGTGGTGTGAACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACATGGATGGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR CCA 90 bp | GCAACTGGTGACAGTCAGTGCGCCCAATGCGAGACAAGGAGAGTATaGAGATCCCTGGGTGGTGGTGCTGCTCAGGGGCCACATGCAGGG | + |
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Preference number: 1 (lower is better) Translates to: ATGDSQCAQCETRRV*RSLGGGAAQGPHAG Trigger: CCCTGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTCTCGCATTGGGCGCACTGACTGTCACCAGTTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR CCA 90 bp | TGCTTTCTCTTTCAGGAGGCTCGAAGCCCGCGAAGCACGAAGTCCTaGACAGGCCCACGGTCAGCTCATGTCCACCTGCCATCCATGTCC | + |
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Preference number: 1 (lower is better) Translates to: CFLFQEARSPRSTKS*TGPRSAHVHLPSMS Trigger: GGACATGGATGGCAGGTGGACATGAGCTGACCGTGGGCCTGTCCAGGACTTCGTGCTTCGCGGGCTTCGAGCCTCCTGAAAGAGAAAGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR CCA 90 bp | GGCCTGCAGGTTCACACCACTGCAGCGTTCACATCCACCCCTTTGTaGCTCTGTGAGGAGCTCATGGGGTACTCAGCGACACTGGTGCCA | + |
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Preference number: 1 (lower is better) Translates to: GLQVHTTAAFTSTPL*LCEELMGYSATLVP Trigger: TGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAGCCACAAAGGGGTGGATGTGAACGCTGCAGTGGTGTGAACCTGCAGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR GCA 90 bp | CTTTGTGGCTCTGTGAGGAGCTCATGGGGTACTCAGCGACACTGGTaGCATTCTCATCCTTTCTCAGTGGTTTCCGTCCTCCAGTCTGCC | + |
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Preference number: 1 (lower is better) Translates to: LCGSVRSSWGTQRHW*HSHPFSVVSVLQSA Trigger: GGCAGACTGGAGGACGGAAACCACTGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAGCCACAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
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| 3UTR CCA 90 bp | CTGCAGCGTTCACATCCACCCCTTTGTGGCTCTGTGAGGAGCTCATaGGGTACTCAGCGACACTGGTGCCATTCTCATCCTTTCTCAGTG | + |
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Preference number: 1 (lower is better) Translates to: LQRSHPPLCGSVRSS*GTQRHWCHSHPFSV Trigger: CACTGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAGCCACAAAGGGGTGGATGTGAACGCTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR GCA 90 bp | GAATACATGCTTTCAGTAGCAACTGGTGACAGTCAGTGCGCCCAATaGGAGACAAGGAGAGTATGGAGATCCCTGGGTGGTGGTGCTGCT | + |
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Preference number: 1 (lower is better) Translates to: EYMLSVATGDSQCAQ*ETRRVWRSLGGGAA Trigger: AGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTCTCGCATTGGGCGCACTGACTGTCACCAGTTGCTACTGAAAGCATGTATTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR GCA 90 bp | CTGGTGCCATTCTCATCCTTTCTCAGTGGTTTCCGTCCTCCAGTCTaGCTAGACTTCCTACTTAGCATGCACCTTCTGAGACTCTGGAAG | + |
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Preference number: 1 (lower is better) Translates to: LVPFSSFLSGFRPPV*LDFLLSMHLLRLWK Trigger: CTTCCAGAGTCTCAGAAGGTGCATGCTAAGTAGGAAGTCTAGGCAGACTGGAGGACGGAAACCACTGAGAAAGGATGAGAATGGCACCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
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| 3UTR-3UTR CCA 90 bp | CGGTGCCCTTCTGGCCAGTGGGTCCCAGGGCCTGCAGGTTCACACCACTGCAGCACCACGGTGCCCTTCTaGCCAGTGGGTCCCAGGGCC | + |
|
Preference number: 2 (lower is better) Translates to: RCPSGQWVPGPAGSHHCSTTVPF*PVGPRA Trigger: GGCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGT...GCTGCAGTGGTGTGAACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCACCG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR-3UTR CCA 90 bp | CGAAGCACGAAGTCCTGGACAGGCCCACGGTCAGCTCATGTCCACCTGCCATCCACCACGGTGCCCTTCTaGCCAGTGGGTCCCAGGGCC | + |
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Preference number: 2 (lower is better) Translates to: RSTKSWTGPRSAHVHLPSTTVPF*PVGPRA Trigger: GGCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGT...GGATGGCAGGTGGACATGAGCTGACCGTGGGCCTGTCCAGGACTTCGTGCTTCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR-3UTR GCA 90 bp | AGCCCGCGAAGCACGAAGTCCTGGACAGGCCCACGGTCAGCTCATGTCCACCTGCCAGTGTCACCACGGTaGCCTTCTGGCCAGTGGGTC | + |
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Preference number: 2 (lower is better) Translates to: SPRSTKSWTGPRSAHVHLPVSPR*PSGQWV Trigger: GACCCACTGGCCAGAAGGGCACCGTGGTGACACTGG...CAGGTGGACATGAGCTGACCGTGGGCCTGTCCAGGACTTCGTGCTTCGCGGGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR-3UTR GCA 90 bp | ACCTGCCATCCATGTCCACCAGTGTCACCACGGTGCCCTTCTGGCCAGTGGGTCCCAGTGTCACCACGGTaGCCTTCTGGCCAGTGGGTC | + |
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Preference number: 2 (lower is better) Translates to: TCHPCPPVSPRCPSGQWVPVSPR*PSGQWV Trigger: GACCCACTGGCCAGAAGGGCACCGTGGTGACACTGG...GACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACATGGATGGCAGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR-3UTR GCA 90 bp | TCTTTCAGGAGGCTCGAAGCCCGCGAAGCACGAAGTCCTGGACAGGCCCACGGTATCCCTGGGTGGTGGTaGTGCTCAGGGGCCACATGC | + |
|
Preference number: 2 (lower is better) Translates to: SFRRLEAREARSPGQAHGIPGWW*CSGATC Trigger: GCATGTGGCCCCTGAGCAGCACCACCACCCAGGGAT...ACCGTGGGCCTGTCCAGGACTTCGTGCTTCGCGGGCTTCGAGCCTCCTGAAAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR-3UTR CCA 90 bp | TGGACAGGCCCACGGTCAGCTCATGTCCACCTGCCATCCATGTCCACCAGTGTCTGCCCTTCTGGCCAGTaGGTCCCAGGGCCTGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: WTGPRSAHVHLPSMSTSVCPSGQ*VPGPAG Trigger: ACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCA...GACACTGGTGGACATGGATGGCAGGTGGACATGAGCTGACCGTGGGCCTGTCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR-3UTR GCA 90 bp | GAAGCACGAAGTCCTGGACAGGCCCACGGTCAGCTCATGTCCACCTGCCATCCATGCTCAGGGGCCACATaGAGGGGAGCCTGGCTCAAG | + |
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Preference number: 2 (lower is better) Translates to: EARSPGQAHGQLMSTCHPCSGAT*RGAWLK Trigger: CTTGAGCCAGGCTCCCCTGCATGTGGCCCCTGAGCA...TGGATGGCAGGTGGACATGAGCTGACCGTGGGCCTGTCCAGGACTTCGTGCTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR-3UTR GCA 90 bp | CGAGACAAGGAGAGTATGGAGATCCCTGGGTGGTGGTGCTGCTCAGGGGCCACAGTGGGTCCCAGGGCCTaGAGGTTCACACCACTGCAG | + |
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Preference number: 2 (lower is better) Translates to: RDKESMEIPGWWCCSGATVGPRA*RFTPLQ Trigger: CTGCAGTGGTGTGAACCTGCAGGCCCTGGGACCCAC...TGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTCTCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR-3UTR CCA 90 bp | CAGTCAGTGCGCCCAATGCGAGACAAGGAGAGTATGGAGATCCCTGGGTGGTGGTGCCCTTCTGGCCAGTaGGTCCCAGGGCCTGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: QSVRPMRDKESMEIPGWWCPSGQ*VPGPAG Trigger: ACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCA...CCACCACCCAGGGATCTCCATACTCTCCTTGTCTCGCATTGGGCGCACTGACTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR-3UTR TCA 90 bp | AGAGTATGGAGATCCCTGGGTGGTGGTGCTGCTCAGGGGCCACATGCAGGGGAGCCCTTTGTGGCTCTGTaGGGAGCTCATGGGGTACTC | + |
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Preference number: 2 (lower is better) Translates to: RVWRSLGGGAAQGPHAGEPFVAL*GAHGVL Trigger: GAGTACCCCATGAGCTCCTCACAGAGCCACAAAGGG...CTCCCCTGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR-3UTR GCA 90 bp | GGCCCACGGTCAGCTCATGTCCACCTGCCATCCATGTCCACCAGTGTCACCACGTCCGATCCTCCAATCTaGGGGCCAATCTGGGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: GPRSAHVHLPSMSTSVTTSDPPI*GPIWAG Trigger: ACCAGCCCAGATTGGCCCGCAGATTGGAGGATCGGA...CGTGGTGACACTGGTGGACATGGATGGCAGGTGGACATGAGCTGACCGTGGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR CAA 90 bp | CAGGGCCTGCAGGTTCACACCACTGCAGCGTTCACATCCACCCCTTaGTGGCTCTGTGAGGAGCTCATGGGGTACTCAGCGACACTGGTG | + |
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Preference number: 2 (lower is better) Translates to: QGLQVHTTAAFTSTP*WLCEELMGYSATLV Trigger: CACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAGCCACAAAGGGGTGGATGTGAACGCTGCAGTGGTGTGAACCTGCAGGCCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCTCGAAGCCCGCGAAGCACGAAGTCCTGGACAGGCCCACGGTCAGCTCATGGAGACAAGGAGAGTATaGAGATCCCTGGGTGGTGGT | + |
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Preference number: 2 (lower is better) Translates to: RLEAREARSPGQAHGQLMETRRV*RSLGGG Trigger: ACCACCACCCAGGGATCTCCATACTCTCCTTGTCTC...CATGAGCTGACCGTGGGCCTGTCCAGGACTTCGTGCTTCGCGGGCTTCGAGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR-3UTR GCA 90 bp | GAGACAAGGAGAGTATGGAGATCCCTGGGTGGTGGTGCTGCTCAGGGGCCACATCAGCTCATGTCCACCTaGCATCCATGTCCACCAGTG | + |
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Preference number: 2 (lower is better) Translates to: ETRRVWRSLGGGAAQGPHQLMST*HPCPPV Trigger: CACTGGTGGACATGGATGGCAGGTGGACATGAGCTG...ATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTGTGAGGAGCTCATGGGGTACTCAGCGACACTGGTGCCATTCTCATCCTTTATCCCTGGGTGGTGGTaGTGCTCAGGGGCCACATGC | + |
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Preference number: 2 (lower is better) Translates to: LCEELMGYSATLVPFSSFIPGWW*CSGATC Trigger: GCATGTGGCCCCTGAGCAGCACCACCACCCAGGGAT...AAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR-3UTR GCA 90 bp | CTAGCCTGGGAAGAGGATGCTTTCTCTTTCAGGAGGCTCGAAGCCCGCGAAGCACAGCTCATGTCCACCTaGCATCCATGTCCACCAGTG | + |
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Preference number: 2 (lower is better) Translates to: LAWEEDAFSFRRLEAREAQLMST*HPCPPV Trigger: CACTGGTGGACATGGATGGCAGGTGGACATGAGCTG...TGCTTCGCGGGCTTCGAGCCTCCTGAAAGAGAAAGCATCCTCTTCCCAGGCTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR-3UTR GCA 90 bp | TCATCCTTTCTCAGTGGTTTCCGTCCTCCAGTCTGCCTAGACTTCCTACTTAGCTCCGATCCTCCAATCTaGGGGCCAATCTGGGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: SSFLSGFRPPVCLDFLLSSDPPI*GPIWAG Trigger: ACCAGCCCAGATTGGCCCGCAGATTGGAGGATCGGA...GCTAAGTAGGAAGTCTAGGCAGACTGGAGGACGGAAACCACTGAGAAAGGATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
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| 3UTR-3UTR TCA 90 bp | GAGGAGCTCATGGGGTACTCAGCGACACTGGTGCCATTCTCATCCTTTCTCAGTTTAGCATGCACCTTCTaGGACTCTGGAAGACCTAGC | + |
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Preference number: 2 (lower is better) Translates to: EELMGYSATLVPFSSFLSLACTF*DSGRPS Trigger: GCTAGGTCTTCCAGAGTCTCAGAAGGTGCATGCTAA...ACTGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
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| 3UTR-3UTR CCA 90 bp | CTCTGTGAGGAGCTCATGGGGTACTCAGCGACACTGGTGCCATTCTCATCCTTTGGTACTCAGCGACACTaGTGCCATTCTCATCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: LCEELMGYSATLVPFSSFGTQRH*CHSHPF Trigger: GAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACC...AAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
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| 3UTR-3UTR GCA 90 bp | CTCAGTGGTTTCCGTCCTCCAGTCTGCCTAGACTTCCTACTTAGCATGCACCTTACTCAGCGACACTGGTaGCATTCTCATCCTTTCTCA | + |
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Preference number: 2 (lower is better) Translates to: LSGFRPPVCLDFLLSMHLTQRHW*HSHPFS Trigger: TGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGT...AAGGTGCATGCTAAGTAGGAAGTCTAGGCAGACTGGAGGACGGAAACCACTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
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| 3UTR-3UTR CCA 90 bp | TCATCCTTTCTCAGTGGTTTCCGTCCTCCAGTCTGCCTAGACTTCCTACTTAGCGGTACTCAGCGACACTaGTGCCATTCTCATCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: SSFLSGFRPPVCLDFLLSGTQRH*CHSHPF Trigger: GAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACC...GCTAAGTAGGAAGTCTAGGCAGACTGGAGGACGGAAACCACTGAGAAAGGATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
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| 3UTR GCA 72 bp | TCCACCTGCCATCCATGTCCACCAGTGTCACCACGGTaGCCTTCTGGCCAGTGGGTCCCAGGGCCTGCAGGT | + |
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Preference number: 3 (lower is better) Translates to: STCHPCPPVSPR*PSGQWVPGPAG Trigger: ACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACATGGATGGCAGGTGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR GCA 72 bp | GAGATCCCTGGGTGGTGGTGCTGCTCAGGGGCCACATaGAGGGGAGCCTGGCTCAAGCCTGGTGTCGGTGTT | + |
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Preference number: 3 (lower is better) Translates to: EIPGWWCCSGAT*RGAWLKPGVGV Trigger: AACACCGACACCAGGCTTGAGCCAGGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR GCA 72 bp | ACCACGGTGCCCTTCTGGCCAGTGGGTCCCAGGGCCTaGAGGTTCACACCACTGCAGCGTTCACATCCACCC | + |
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Preference number: 3 (lower is better) Translates to: TTVPFWPVGPRA*RFTPLQRSHPP Trigger: GGGTGGATGTGAACGCTGCAGTGGTGTGAACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR CCA 72 bp | TGTCCACCAGTGTCACCACGGTGCCCTTCTGGCCAGTaGGTCCCAGGGCCTGCAGGTTCACACCACTGCAGC | + |
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Preference number: 3 (lower is better) Translates to: CPPVSPRCPSGQ*VPGPAGSHHCS Trigger: GCTGCAGTGGTGTGAACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR CCA 72 bp | CCATCCATGTCCACCAGTGTCACCACGGTGCCCTTCTaGCCAGTGGGTCCCAGGGCCTGCAGGTTCACACCA | + |
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Preference number: 3 (lower is better) Translates to: PSMSTSVTTVPF*PVGPRACRFTP Trigger: TGGTGTGAACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACATGGATGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR-3UTR CAA 90 bp | TCCCTGGGTGGTGGTGCTGCTCAGGGGCCACATGCAGGGGAGCCTGGCTCAAGCTTCACATCCACCCCTTaGTGGCTCTGTGAGGAGCTC | + |
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Preference number: 3 (lower is better) Translates to: SLGGGAAQGPHAGEPGSSFTSTP*WLCEEL Trigger: GAGCTCCTCACAGAGCCACAAAGGGGTGGATGTGAA...GCTTGAGCCAGGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
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| 3UTR TCA 72 bp | GCTCAAGCCTGGTGTCGGTGTTGCACCCCTCGGGGGTaGCCAGGGCTAGCCTGGGAAGAGGATGCTTTCTCT | + |
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Preference number: 3 (lower is better) Translates to: AQAWCRCCTPRG*PGLAWEEDAFS Trigger: AGAGAAAGCATCCTCTTCCCAGGCTAGCCCTGGTCACCCCCGAGGGGTGCAACACCGACACCAGGCTTGAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR GCA 72 bp | AGTCCTGGACAGGCCCACGGTCAGCTCATGTCCACCTaGCATCCATGTCCACCAGTGTCACCACGGTGCCCT | + |
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Preference number: 3 (lower is better) Translates to: SPGQAHGQLMST*HPCPPVSPRCP Trigger: AGGGCACCGTGGTGACACTGGTGGACATGGATGGCAGGTGGACATGAGCTGACCGTGGGCCTGTCCAGGACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR GCA 72 bp | GACAAGGAGAGTATGGAGATCCCTGGGTGGTGGTGCTaGTCAGGGGCCACATGCAGGGGAGCCTGGCTCAAG | + |
|
Preference number: 3 (lower is better) Translates to: DKESMEIPGWWC*SGATCRGAWLK Trigger: CTTGAGCCAGGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR CCA 72 bp | TTTCAGGAGGCTCGAAGCCCGCGAAGCACGAAGTCCTaGACAGGCCCACGGTCAGCTCATGTCCACCTGCCA | + |
|
Preference number: 3 (lower is better) Translates to: FQEARSPRSTKS*TGPRSAHVHLP Trigger: TGGCAGGTGGACATGAGCTGACCGTGGGCCTGTCCAGGACTTCGTGCTTCGCGGGCTTCGAGCCTCCTGAAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR CCA 72 bp | CCAATGCGAGACAAGGAGAGTATGGAGATCCCTGGGTaGTGGTGCTGCTCAGGGGCCACATGCAGGGGAGCC | + |
|
Preference number: 3 (lower is better) Translates to: PMRDKESMEIPG*WCCSGATCRGA Trigger: GGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTCTCGCATTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
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| 3UTR CCA 72 bp | GACAGTCAGTGCGCCCAATGCGAGACAAGGAGAGTATaGAGATCCCTGGGTGGTGGTGCTGCTCAGGGGCCA | + |
|
Preference number: 3 (lower is better) Translates to: DSQCAQCETRRV*RSLGGGAAQGP Trigger: TGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTCTCGCATTGGGCGCACTGACTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| 3UTR CCA 72 bp | TCTTTCCGATCCTCCAATCTGCGGGCCAATCTGGGCTaGTCCCACCAAGCAAGGCAGAGGCCACAGAAAGCT | + |
|
Preference number: 3 (lower is better) Translates to: SFRSSNLRANLG*SHQARQRPQKA Trigger: AGCTTTCTGTGGCCTCTGCCTTGCTTGGTGGGACCAGCCCAGATTGGCCCGCAGATTGGAGGATCGGAAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
||
| 3UTR GCA 72 bp | GCAGACATTGCTAGGATTCTTTCCGATCCTCCAATCTaGGGGCCAATCTGGGCTGGTCCCACCAAGCAAGGC | + |
|
Preference number: 3 (lower is better) Translates to: ADIARILSDPPI*GPIWAGPTKQG Trigger: GCCTTGCTTGGTGGGACCAGCCCAGATTGGCCCGCAGATTGGAGGATCGGAAAGAATCCTAGCAATGTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
||
| 3UTR CCA 72 bp | GTTCACACCACTGCAGCGTTCACATCCACCCCTTTGTaGCTCTGTGAGGAGCTCATGGGGTACTCAGCGACA | + |
|
Preference number: 3 (lower is better) Translates to: VHTTAAFTSTPL*LCEELMGYSAT Trigger: TGTCGCTGAGTACCCCATGAGCTCCTCACAGAGCCACAAAGGGGTGGATGTGAACGCTGCAGTGGTGTGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
||
| 3UTR CCA 72 bp | GGCTCTGTGAGGAGCTCATGGGGTACTCAGCGACACTaGTGCCATTCTCATCCTTTCTCAGTGGTTTCCGTC | + |
|
Preference number: 3 (lower is better) Translates to: GSVRSSWGTQRH*CHSHPFSVVSV Trigger: GACGGAAACCACTGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
||
| 3UTR CCA 72 bp | TCACATCCACCCCTTTGTGGCTCTGTGAGGAGCTCATaGGGTACTCAGCGACACTGGTGCCATTCTCATCCT | + |
|
Preference number: 3 (lower is better) Translates to: SHPPLCGSVRSS*GTQRHWCHSHP Trigger: AGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAGCCACAAAGGGGTGGATGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
||
| 3UTR GCA 72 bp | GAATACATGCTTTCAGTAGCAACTGGTGACAGTCAGTaGGCCCAATGCGAGACAAGGAGAGTATGGAGATCC | + |
|
Preference number: 3 (lower is better) Translates to: EYMLSVATGDSQ*AQCETRRVWRS Trigger: GGATCTCCATACTCTCCTTGTCTCGCATTGGGCGCACTGACTGTCACCAGTTGCTACTGAAAGCATGTATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| 3UTR TCA 72 bp | GCTTTCATTGGAATACATGCTTTCAGTAGCAACTGGTaGCAGTCAGTGCGCCCAATGCGAGACAAGGAGAGT | + |
|
Preference number: 3 (lower is better) Translates to: AFIGIHAFSSNW*QSVRPMRDKES Trigger: ACTCTCCTTGTCTCGCATTGGGCGCACTGACTGTCACCAGTTGCTACTGAAAGCATGTATTCCAATGAAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| 3UTR GCA 72 bp | TTCTCATCCTTTCTCAGTGGTTTCCGTCCTCCAGTCTaGCTAGACTTCCTACTTAGCATGCACCTTCTGAGA | + |
|
Preference number: 3 (lower is better) Translates to: FSSFLSGFRPPV*LDFLLSMHLLR Trigger: TCTCAGAAGGTGCATGCTAAGTAGGAAGTCTAGGCAGACTGGAGGACGGAAACCACTGAGAAAGGATGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
||
| CDS-3UTR CCA 90 bp | CCACATGCAGGGGAGCCTGGCTCAAGCCTGGTGTCGGTGTTGCACCCCTCGGGGGGGCGGAGAGTAGTCTaGGAGGTGGCGGAGGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: PHAGEPGSSLVSVLHPSGGRRVV*EVAEVG Trigger: CCCCACCTCCGCCACCTCCCAGACTACTCTCCGCCC...CCCCGAGGGGTGCAACACCGACACCAGGCTTGAGCCAGGCTCCCCTGCATGTGG 69% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR CCA 90 bp | CCACATGCAGGGGAGCCTGGCTCAAGCCTGGTGTCGGTGTTGCACCCCTCGGGGGGTGGGGGCCGGCACTaGCAGATGTGTTGGCAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: PHAGEPGSSLVSVLHPSGGGGRH*QMCWQL Trigger: CAGCTGCCAACACATCTGCCAGTGCCGGCCCCCACC...CCCCGAGGGGTGCAACACCGACACCAGGCTTGAGCCAGGCTCCCCTGCATGTGG 68% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR GCA 90 bp | GGTGGTGCTGCTCAGGGGCCACATGCAGGGGAGCCTGGCTCAAGCCTGGTGTCGGGGTGCAGCGCACAGTaGAGCAGAAGTGAGGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: GGAAQGPHAGEPGSSLVSGCSAQ*SRSEGQ Trigger: CTGGCCCTCACTTCTGCTGCACTGTGCGCTGCACCC...CGACACCAGGCTTGAGCCAGGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR GCA 90 bp | CGGTGCCCTTCTGGCCAGTGGGTCCCAGGGCCTGCAGGTTCACACCACTGCAGCGGGTGCAGCGCACAGTaGAGCAGAAGTGAGGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RCPSGQWVPGPAGSHHCSGCSAQ*SRSEGQ Trigger: CTGGCCCTCACTTCTGCTGCACTGTGCGCTGCACCC...GCTGCAGTGGTGTGAACCTGCAGGCCCTGGGACCCACTGGCCAGAAGGGCACCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
||
| CDS-3UTR CCA 90 bp | GTGGTGGTGCTGCTCAGGGGCCACATGCAGGGGAGCCTGGCTCAAGCCTGGTGTGGTGGGGGCCGGCACTaGCAGATGTGTTGGCAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: VVVLLRGHMQGSLAQAWCGGGRH*QMCWQL Trigger: CAGCTGCCAACACATCTGCCAGTGCCGGCCCCCACC...ACACCAGGCTTGAGCCAGGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACCAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR GCA 90 bp | GGTGGTGGTGCTGCTCAGGGGCCACATGCAGGGGAGCCTGGCTCAAGCCTGGTGCCACCAGCTGTCCTCTaGAGGGCAGGAGGTAGAGTT | + |
|
Preference number: 4 (lower is better) Translates to: GGGAAQGPHAGEPGSSLVPPAVL*RAGGRV Trigger: AACTCTACCTCCTGCCCTGCAGAGGACAGCTGGTGG...CACCAGGCTTGAGCCAGGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACCACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR GCA 90 bp | CTCAGGGGCCACATGCAGGGGAGCCTGGCTCAAGCCTGGTGTCGGTGTTGCACCAAACCCCAGAGTGGGTaGAGCGCACAGTGCAGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: LRGHMQGSLAQAWCRCCTKPQSG*SAQCSR Trigger: TCTGCTGCACTGTGCGCTGCACCCACTCTGGGGTTT...GGTGCAACACCGACACCAGGCTTGAGCCAGGCTCCCCTGCATGTGGCCCCTGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR CCA 90 bp | GGAGATCCCTGGGTGGTGGTGCTGCTCAGGGGCCACATGCAGGGGAGCCTGGCTACATCCACCCCTTTGTaGCTCTGTGAGGAGCTCATG | + |
|
Preference number: 4 (lower is better) Translates to: GDPWVVVLLRGHMQGSLATSTPL*LCEELM Trigger: CATGAGCTCCTCACAGAGCCACAAAGGGGTGGATGT...AGCCAGGCTCCCCTGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074416.10 |
||
| CDS-3UTR TCA 90 bp | AGCCCGCGAAGCACGAAGTCCTGGACAGGCCCACGGTCAGCTCATGTCCACCTGAGACCACAGCGACAATaGTCACCAGACCAGACCACC | + |
|
Preference number: 4 (lower is better) Translates to: SPRSTKSWTGPRSAHVHLRPQRQ*SPDQTT Trigger: GGTGGTCTGGTCTGGTGATCATTGTCGCTGTGGTCT...CAGGTGGACATGAGCTGACCGTGGGCCTGTCCAGGACTTCGTGCTTCGCGGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR GCA 90 bp | GTGCGCCCAATGCGAGACAAGGAGAGTATGGAGATCCCTGGGTGGTGGTGCTGCAAACCCCAGAGTGGGTaGAGCGCACAGTGCAGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: VRPMRDKESMEIPGWWCCKPQSG*SAQCSR Trigger: TCTGCTGCACTGTGCGCTGCACCCACTCTGGGGTTT...GCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGTCTCGCATTGGGCGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR TCA 90 bp | TGGACAGGCCCACGGTCAGCTCATGTCCACCTGCCATCCATGTCCACCAGTGTCAGACCACAGCGACAATaGTCACCAGACCAGACCACC | + |
|
Preference number: 4 (lower is better) Translates to: WTGPRSAHVHLPSMSTSVRPQRQ*SPDQTT Trigger: GGTGGTCTGGTCTGGTGATCATTGTCGCTGTGGTCT...GACACTGGTGGACATGGATGGCAGGTGGACATGAGCTGACCGTGGGCCTGTCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR TCA 90 bp | ACAAGGAGAGTATGGAGATCCCTGGGTGGTGGTGCTGCTCAGGGGCCACATGCACCCTTTGTGGCTCTGTaGGGAGCTCATGGGGTACTC | + |
|
Preference number: 4 (lower is better) Translates to: TRRVWRSLGGGAAQGPHAPFVAL*GAHGVL Trigger: GAGTACCCCATGAGCTCCTCACAGAGCCACAAAGGG...TGCATGTGGCCCCTGAGCAGCACCACCACCCAGGGATCTCCATACTCTCCTTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074416.10 |
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| CDS-3UTR CCA 90 bp | ATCCATGTCCACCAGTGTCACCACGGTGCCCTTCTGGCCAGTGGGTCCCAGGGCCACTGGCAGATGTGTTaGCAGCTGTCAGTCACCTTA | + |
|
Preference number: 4 (lower is better) Translates to: IHVHQCHHGALLASGSQGHWQMC*QLSVTL Trigger: TAAGGTGACTGACAGCTGCCAACACATCTGCCAGTG...GCCCTGGGACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACATGGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| 3UTR CAA 72 bp | CAGGTTCACACCACTGCAGCGTTCACATCCACCCCTTaGTGGCTCTGTGAGGAGCTCATGGGGTACTCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: QVHTTAAFTSTP*WLCEELMGYSA Trigger: CGCTGAGTACCCCATGAGCTCCTCACAGAGCCACAAAGGGGTGGATGTGAACGCTGCAGTGGTGTGAACCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
||
| CDS-3UTR CCA 90 bp | ACAGGCCCACGGTCAGCTCATGTCCACCTGCCATCCATGTCCACCAGTGTCACCGGTACTCAGCGACACTaGTGCCATTCTCATCCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: TGPRSAHVHLPSMSTSVTGTQRH*CHSHPF Trigger: GAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACC...GGTGACACTGGTGGACATGGATGGCAGGTGGACATGAGCTGACCGTGGGCCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074416.10 |
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| CDS-3UTR GCA 90 bp | CCATTCTCATCCTTTCTCAGTGGTTTCCGTCCTCCAGTCTGCCTAGACTTCCTAGGGTGCAGCGCACAGTaGAGCAGAAGTGAGGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: PFSSFLSGFRPPVCLDFLGCSAQ*SRSEGQ Trigger: CTGGCCCTCACTTCTGCTGCACTGTGCGCTGCACCC...TAGGAAGTCTAGGCAGACTGGAGGACGGAAACCACTGAGAAAGGATGAGAATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
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| CDS-3UTR GCA 90 bp | TCTGTGAGGAGCTCATGGGGTACTCAGCGACACTGGTGCCATTCTCATCCTTTCCCACCAGCTGTCCTCTaGAGGGCAGGAGGTAGAGTT | + |
|
Preference number: 4 (lower is better) Translates to: SVRSSWGTQRHWCHSHPFPPAVL*RAGGRV Trigger: AACTCTACCTCCTGCCCTGCAGAGGACAGCTGGTGG...GAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
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| CDS-3UTR GCA 90 bp | CCACGGTCAGCTCATGTCCACCTGCCATCCATGTCCACCAGTGTCACCACGGTGACTCAGCGACACTGGTaGCATTCTCATCCTTTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: PRSAHVHLPSMSTSVTTVTQRHW*HSHPFS Trigger: TGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGT...CACCGTGGTGACACTGGTGGACATGGATGGCAGGTGGACATGAGCTGACCGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074416.10 |
||
| CDS-3UTR GCA 90 bp | CTCAGTGGTTTCCGTCCTCCAGTCTGCCTAGACTTCCTACTTAGCATGCACCTTCCACCAGCTGTCCTCTaGAGGGCAGGAGGTAGAGTT | + |
|
Preference number: 4 (lower is better) Translates to: LSGFRPPVCLDFLLSMHLPPAVL*RAGGRV Trigger: AACTCTACCTCCTGCCCTGCAGAGGACAGCTGGTGG...AAGGTGCATGCTAAGTAGGAAGTCTAGGCAGACTGGAGGACGGAAACCACTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127843.8 ENSMUST00000156176.2 |
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| CDS-3UTR CCA 90 bp | GAGGAGCTCATGGGGTACTCAGCGACACTGGTGCCATTCTCATCCTTTCTCAGTCACTGGCAGATGTGTTaGCAGCTGTCAGTCACCTTA | + |
|
Preference number: 4 (lower is better) Translates to: EELMGYSATLVPFSSFLSHWQMC*QLSVTL Trigger: TAAGGTGACTGACAGCTGCCAACACATCTGCCAGTG...ACTGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127843.8 |
||
| CDS-3UTR CAA 90 bp | CTGCCATCCATGTCCACCAGTGTCACCACGGTGCCCTTCTGGCCAGTGGGTCCCTTCACATCCACCCCTTaGTGGCTCTGTGAGGAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: LPSMSTSVTTVPFWPVGPFTSTP*WLCEEL Trigger: GAGCTCCTCACAGAGCCACAAAGGGGTGGATGTGAA...GGGACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACATGGATGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074416.10 |
||
| CDS-3UTR CAA 90 bp | ACCTGCCATCCATGTCCACCAGTGTCACCACGGTGCCCTTCTGGCCAGTGGGTCGCACTGGCAGATGTGTaGGCAGCTGTCAGTCACCTT | + |
|
Preference number: 5 (lower is better) Translates to: TCHPCPPVSPRCPSGQWVALADV*AAVSHL Trigger: AAGGTGACTGACAGCTGCCAACACATCTGCCAGTGC...GACCCACTGGCCAGAAGGGCACCGTGGTGACACTGGTGGACATGGATGGCAGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR CAA 90 bp | AGTCAGTGCGCCCAATGCGAGACAAGGAGAGTATGGAGATCCCTGGGTGGTGGTGCACTGGCAGATGTGTaGGCAGCTGTCAGTCACCTT | + |
|
Preference number: 5 (lower is better) Translates to: SQCAQCETRRVWRSLGGGALADV*AAVSHL Trigger: AAGGTGACTGACAGCTGCCAACACATCTGCCAGTGC...ACCACCACCCAGGGATCTCCATACTCTCCTTGTCTCGCATTGGGCGCACTGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS TCA 90 bp | TCAGTCACCTTAGAGCAAGACTTCTGGGGCTCAGCGTGTGTCACCTaGACTAAACCCCAGAGTGGGTGCAGCGCACAGTGCAGCAGAAGT | + |
|
Preference number: 5 (lower is better) Translates to: SVTLEQDFWGSACVT*TKPQSGCSAQCSRS Trigger: ACTTCTGCTGCACTGTGCGCTGCACCCACTCTGGGGTTTAGTTCAGGTGACACACGCTGAGCCCCAGAAGTCTTGCTCTAAGGTGACTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS-3UTR CAA 90 bp | CTCAGTGGTTTCCGTCCTCCAGTCTGCCTAGACTTCCTACTTAGCATGCACCTTGGGCAGGAGGTAGAGTaGGGAGCTGAACTAAACCCC | + |
|
Preference number: 5 (lower is better) Translates to: LSGFRPPVCLDFLLSMHLGQEVE*GAELNP Trigger: GGGGTTTAGTTCAGCTCCCAACTCTACCTCCTGCCC...AAGGTGCATGCTAAGTAGGAAGTCTAGGCAGACTGGAGGACGGAAACCACTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156176.2 |
||
| CDS CCA 90 bp | CCCCTTTGTGGCTCTGTGAGGAGCTCATGGGGTACTCAGCGACACTaGTGCCATTCTCATCCTTTCTCAGTGGTTTCCTCTTTATGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: PLCGSVRSSWGTQRH*CHSHPFSVVSSLWL Trigger: AAGCCATAAAGAGGAAACCACTGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAGCCACAAAGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074416.10 |
||
| CDS GCA 90 bp | CTTTGTGGCTCTGTGAGGAGCTCATGGGGTACTCAGCGACACTGGTaGCATTCTCATCCTTTCTCAGTGGTTTCCTCTTTATGGCTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: LCGSVRSSWGTQRHW*HSHPFSVVSSLWLC Trigger: ACAAAGCCATAAAGAGGAAACCACTGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAGCCACAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074416.10 |
||
| CDS TCA 72 bp | TTAGAGCAAGACTTCTGGGGCTCAGCGTGTGTCACCTaGACTAAACCCCAGAGTGGGTGCAGCGCACAGTGC | + |
|
Preference number: 6 (lower is better) Translates to: LEQDFWGSACVT*TKPQSGCSAQC Trigger: GCACTGTGCGCTGCACCCACTCTGGGGTTTAGTTCAGGTGACACACGCTGAGCCCCAGAAGTCTTGCTCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074416.10 ENSMUST00000127843.8 |
||
| CDS CCA 72 bp | GGCTCTGTGAGGAGCTCATGGGGTACTCAGCGACACTaGTGCCATTCTCATCCTTTCTCAGTGGTTTCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: GSVRSSWGTQRH*CHSHPFSVVSS Trigger: AGAGGAAACCACTGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCACAGAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074416.10 |
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