Pregenerated sensors for PRIM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026134Ensembl transcript IDs: ENSMUST00000027312.11
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGTGTGTGCGGAGGCCAGCGCAGATaGAGCATCCCTGGTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LSKVRWKQACFPVNVCVCGGQRR*SIPGLL Trigger: CAGAAGACCAGGGATGCTGCATCTGCGCTGGCCTCC...GCACACACACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS-3UTR TCA 90 bp | TCCCATTCTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGTTAGCCCAATGCCCTTaGGGAACAGGCCGTACTGCA | + |
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Preference number: 4 (lower is better) Translates to: SHSVKSKVEASLLPSKCVLAQCP*GTGRTA Trigger: TGCAGTACGGCCTGTTCCTCAAGGGCATTGGGCTAA...CACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAGAATGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS-3UTR CCA 90 bp | CTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGTGTGTGCATAAAGTGGGAGATGTaGTCCCTTCGCCGTGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LSKVRWKQACFPVNVCVCIKWEM*SLRRGS Trigger: TGAGCCACGGCGAAGGGACCACATCTCCCACTTTAT...GCACACACACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS-3UTR GCA 90 bp | TCCCATTCTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGCAGAACTGCAATGCCTaGTCCAGCGTTAGCCCAATG | + |
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Preference number: 4 (lower is better) Translates to: SHSVKSKVEASLLPSKCVQNCNA*SSVSPM Trigger: CATTGGGCTAACGCTGGAGCAGGCATTGCAGTTCTG...CACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAGAATGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS-3UTR GCA 90 bp | TCCCATTCTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGGATCTAAGGAAATCTTaGCGGTGTTCTTCTGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: SHSVKSKVEASLLPSKCVDLRKS*RCSSGY Trigger: GTACCCAGAAGAACACCGGCAAGATTTCCTTAGATC...CACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAGAATGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS-3UTR CCA 90 bp | TCCCATTCTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGGTGCTGAGGTGTTTCTaGCTGACTGATTTCCTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: SHSVKSKVEASLLPSKCVVLRCF*LTDFLL Trigger: AAGAAGGAAATCAGTCAGCCAGAAACACCTCAGCAC...CACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAGAATGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS-3UTR TCA 90 bp | TCCCATTCTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGCCTTTGGTAAAATACTaGATCGAAACCGAAGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: SHSVKSKVEASLLPSKCVPLVKY*IETEAD Trigger: ATCTGCTTCGGTTTCGATTCAGTATTTTACCAAAGG...CACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAGAATGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS-3UTR TCA 90 bp | TCCCATTCTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGGCCTCAAAATGCAAATaGCTATCCTTCAAGAAACTC | + |
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Preference number: 4 (lower is better) Translates to: SHSVKSKVEASLLPSKCVASKCK*LSFKKL Trigger: GAGTTTCTTGAAGGATAGTCATTTGCATTTTGAGGC...CACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAGAATGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS-3UTR CCA 90 bp | TCCCATTCTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGTTTATCAAACTTGTCTaGGTCCATCTTTCCTCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: SHSVKSKVEASLLPSKCVFIKLV*VHLSSD Trigger: ATCAGAGGAAAGATGGACCCAGACAAGTTTGATAAA...CACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAGAATGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS-3UTR GCA 90 bp | TCCCATTCTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGACCGAGGTTCTCAATTaGTTTAAGCAATTTAACTCT | + |
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Preference number: 4 (lower is better) Translates to: SHSVKSKVEASLLPSKCVTEVLN*FKQFNS Trigger: AGAGTTAAATTGCTTAAAGCAATTGAGAACCTCGGT...CACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAGAATGGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS-3UTR CAA 90 bp | CTGTCAAAAGTAAGGTGGAAGCAAGCCTGCTTCCCAGTAAATGTGTGTGTGTGCCAATTTACTCTGGTATaGTTCGGTTCCTTTCACATA | + |
|
Preference number: 5 (lower is better) Translates to: LSKVRWKQACFPVNVCVCQFTLV*FGSFHI Trigger: TATGTGAAAGGAACCGAACAATACCAGAGTAAATTG...GCACACACACACATTTACTGGGAAGCAGGCTTGCTTCCACCTTACTTTTGACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS TCA 90 bp | TTTGGTAAAATACTGAATCGAAACCGAAGCAGATCCATTTCTTGTTaGATAAACCATCGTCTAAGATCTTCCGACTGGCAGTACGCGAGG | + |
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Preference number: 5 (lower is better) Translates to: FGKILNRNRSRSISC*INHRLRSSDWQYAR Trigger: CCTCGCGTACTGCCAGTCGGAAGATCTTAGACGATGGTTTATTCAACAAGAAATGGATCTGCTTCGGTTTCGATTCAGTATTTTACCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS TCA 72 bp | CCCTTGAGGAACAGGCCGTACTGCATCCGGCCTCCGTaGCGGAGATGGTGGTTCTCCCTCAGCGCCTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: PLRNRPYCIRPP*RRWWFSLSALC Trigger: GCACAAGGCGCTGAGGGAGAACCACCATCTCCGTCACGGAGGCCGGATGCAGTACGGCCTGTTCCTCAAGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS CAA 72 bp | GAGCTTTCGAATCTCGGCCTCCAATTTACTCTGGTATaGTTCGGTTCCTTTCACATAGCTCACACCGAGGTT | + |
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Preference number: 6 (lower is better) Translates to: ELSNLGLQFTLV*FGSFHIAHTEV Trigger: AACCTCGGTGTGAGCTATGTGAAAGGAACCGAACAATACCAGAGTAAATTGGAGGCCGAGATTCGAAAGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS CAA 90 bp | GGAAAACTTGAGCTTTCGAATCTCGGCCTCCAATTTACTCTGGTATaGTTCGGTTCCTTTCACATAGCTCACACCGAGGTTCTCAATTGC | + |
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Preference number: 6 (lower is better) Translates to: GKLELSNLGLQFTLV*FGSFHIAHTEVLNC Trigger: GCAATTGAGAACCTCGGTGTGAGCTATGTGAAAGGAACCGAACAATACCAGAGTAAATTGGAGGCCGAGATTCGAAAGCTCAAGTTTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS TCA 72 bp | ATACTGAATCGAAACCGAAGCAGATCCATTTCTTGTTaGATAAACCATCGTCTAAGATCTTCCGACTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: ILNRNRSRSISC*INHRLRSSDWQ Trigger: CTGCCAGTCGGAAGATCTTAGACGATGGTTTATTCAACAAGAAATGGATCTGCTTCGGTTTCGATTCAGTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS TCA 72 bp | GTCTTCTCCTCGTCACTGATAGCCTCAAAATGCAAATaGCTATCCTTCAAGAAACTCTGGACTTTATCCTTT | + |
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Preference number: 6 (lower is better) Translates to: VFSSSLIASKCK*LSFKKLWTLSF Trigger: AAAGGATAAAGTCCAGAGTTTCTTGAAGGATAGTCATTTGCATTTTGAGGCTATCAGTGACGAGGAGAAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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| CDS TCA 72 bp | TCAAGAAACTCTGGACTTTATCCTTTGGTAAAATACTaGATCGAAACCGAAGCAGATCCATTTCTTGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: SRNSGLYPLVKY*IETEADPFLVE Trigger: TTCAACAAGAAATGGATCTGCTTCGGTTTCGATTCAGTATTTTACCAAAGGATAAAGTCCAGAGTTTCTTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027312.11 |
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