Pregenerated sensors for PRIM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025395Ensembl transcript IDs: ENSMUST00000026461.8, ENSMUST00000178041.8
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACTTCTGCAGTTCACTTATTCTTGATTTATTGTTTCAGGGCTCTTaGCACCCTCTTTGGTCTCACAAACCAGGTCTCCTTGACATAAAT | + |
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Preference number: 1 (lower is better) Translates to: NFCSSLILDLLFQGS*HPLWSHKPGLLDIN Trigger: ATTTATGTCAAGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATAAATCAAGAATAAGTGAACTGCAGAAGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026461.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTTCTGCTTCAAGGATTaGGGCCCATTGATGATTCTA | + |
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Preference number: 2 (lower is better) Translates to: IYCFRALDTLFGLTNQVSFCFKD*GPLMIL Trigger: TAGAATCATCAATGGGCCTCAATCCTTGAAGCAGAA...GGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCACAAACCAGGTCTCCTTGACATAAATTACTTCTCGAAAGAAAGTTCTGCTAGAAGGCATTCACGTTaGTTTGATGGGAGCTGTTTT | + |
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Preference number: 2 (lower is better) Translates to: SHKPGLLDINYFSKESSARRHSR*FDGSCF Trigger: AAAACAGCTCCCATCAAACCAACGTGAATGCCTTCT...AGCAGAACTTTCTTTCGAGAAGTAATTTATGTCAAGGAGACCTGGTTTGTGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| 3UTR-3UTR CCA 90 bp | GGTCTCCTTGACATAAATTACTTCTCGAAAGAAAGTTCTGCTTCAAGGATTGAGAGAAGGCATTCACGTTaGTTTGATGGGAGCTGTTTT | + |
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Preference number: 2 (lower is better) Translates to: GLLDINYFSKESSASRIERRHSR*FDGSCF Trigger: AAAACAGCTCCCATCAAACCAACGTGAATGCCTTCT...CTCAATCCTTGAAGCAGAACTTTCTTTCGAGAAGTAATTTATGTCAAGGAGACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| 3UTR-3UTR TCA 90 bp | CAAACTTCTGCAGTTCACTTATTCTTGATTTATTGTTTCAGGGCTCTTGACACCCAAACCAGGTCTCCTTaGCATAAATTACTTCTCGAA | + |
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Preference number: 2 (lower is better) Translates to: QTSAVHLFLIYCFRALDTQTRSP*HKLLLE Trigger: TTCGAGAAGTAATTTATGTCAAGGAGACCTGGTTTG...GGTGTCAAGAGCCCTGAAACAATAAATCAAGAATAAGTGAACTGCAGAAGTTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026461.8 |
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| 3UTR-3UTR CCA 90 bp | CTTGACATAAATTACTTCTCGAAAGAAAGTTCTGCTTCAAGGATTGAGGCCCATTTATTAAATGCTCCATaGATGAAGGTAGAAGGCATT | + |
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Preference number: 2 (lower is better) Translates to: LDINYFSKESSASRIEAHLLNAP*MKVEGI Trigger: AATGCCTTCTACCTTCATCCATGGAGCATTTAATAA...ATGGGCCTCAATCCTTGAAGCAGAACTTTCTTTCGAGAAGTAATTTATGTCAAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| 3UTR TCA 72 bp | TTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTTaGCATAAATTACTTCTCGAAAGAAAGTTCTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: LTPSLVSQTRSP*HKLLLERKFCF Trigger: GAAGCAGAACTTTCTTTCGAGAAGTAATTTATGTCAAGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| 3UTR TCA 72 bp | AGTTCACTTATTCTTGATTTATTGTTTCAGGGCTCTTaGCACCCTCTTTGGTCTCACAAACCAGGTCTCCTT | + |
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Preference number: 3 (lower is better) Translates to: SSLILDLLFQGS*HPLWSHKPGLL Trigger: AAGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATAAATCAAGAATAAGTGAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026461.8 |
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| CDS-3UTR TCA 90 bp | TATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTTGTCACTCCGCCATAGTTaGGCCAGCGATAGTACTGGG | + |
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Preference number: 4 (lower is better) Translates to: YCFRALDTLFGLTNQVSLSLRHS*ASDSTG Trigger: CCCAGTACTATCGCTGGCTCAACTATGGCGGAGTGA...CAAGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | TATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTTGGGGCTCTTCAGTAAGTaGTTGACTCCCTTGCTGACG | + |
|
Preference number: 4 (lower is better) Translates to: YCFRALDTLFGLTNQVSLGLFSK*LTPLLT Trigger: CGTCAGCAAGGGAGTCAATCACTTACTGAAGAGCCC...CAAGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | ATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTGATGGGAGCCGACCTGTCTTGGGATaGACACTGAAAGGGCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: IKCSMDEGRRHSRWFDGSRPVLG*TLKGLF Trigger: GAAGAGCCCTTTCAGTGTTCATCCCAAGACAGGTCG...GCTCCCATCAAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | TCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGCACACCTCTCCTTCCTaGATAGACCCAGAGGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: STVFIKCSMDEGRRHSRWHTSPS*IDPEAV Trigger: CACCGCCTCTGGGTCTATTCAGGAAGGAGAGGTGTG...CCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | TCTCACAAACCAGGTCTCCTTGACATAAATTACTTCTCGAAAGAAAGTTCTGCTAACAGTACTGGAGCATaGCCTCCCACTCCAGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SHKPGLLDINYFSKESSANSTGA*PPTPAR Trigger: CCTGGCTGGAGTGGGAGGTCATGCTCCAGTACTGTT...AGCAGAACTTTCTTTCGAGAAGTAATTTATGTCAAGGAGACCTGGTTTGTGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CCA 90 bp | TTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTGATGGGAGCTGTTGACATCCAGGCGTaGGAAACAGTACTGGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LNAPWMKVEGIHVGLMGAVDIQA*ETVLEH Trigger: ATGCTCCAGTACTGTTTCCCACGCCTGGATGTCAAC...AGCTCCCATCAAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | GTTCACTTATTCTTGATTTATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCTCAATGCCCGGTCTATaGTGCGCATGGCCATTGTCA | + |
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Preference number: 4 (lower is better) Translates to: VHLFLIYCFRALDTLFGLSMPGL*CAWPLS Trigger: TGACAATGGCCATGCGCATCATAGACCGGGCATTGA...GAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATAAATCAAGAATAAGTGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026461.8 |
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| CDS-3UTR TCA 90 bp | GATTCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTCACACCTCTCCTTCCTaGATAGACCCAGAGGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: DSTVFIKCSMDEGRRHSRHTSPS*IDPEAV Trigger: CACCGCCTCTGGGTCTATTCAGGAAGGAGAGGTGTG...ACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | TATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTGATGAACAGTACTGGAGCATaGCCTCCCACTCCAGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: YLLNAPWMKVEGIHVGLMNSTGA*PPTPAR Trigger: CCTGGCTGGAGTGGGAGGTCATGCTCCAGTACTGTT...CATCAAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | TCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTCGGTAATAAAGCTTaGGTAGCTCCGGCAGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: STVFIKCSMDEGRRHSRWFGNKA*VAPAAP Trigger: CGGAGCTGCCGGAGCTACTCAAGCTTTATTACCGAA...CCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | CAAGGATTGAGGCCCATTGATGATTCTACTGTATTTATTAAATGCTCCATGGATTCACTCCGCCATAGTTaGGCCAGCGATAGTACTGGG | + |
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Preference number: 4 (lower is better) Translates to: QGLRPIDDSTVFIKCSMDSLRHS*ASDSTG Trigger: CCCAGTACTATCGCTGGCTCAACTATGGCGGAGTGA...ATCCATGGAGCATTTAATAAATACAGTAGAATCATCAATGGGCCTCAATCCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | TCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGCGACCTGTCTTGGGATaGACACTGAAAGGGCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: STVFIKCSMDEGRRHSRWRPVLG*TLKGLF Trigger: GAAGAGCCCTTTCAGTGTTCATCCCAAGACAGGTCG...CCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | TATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTTGTCCTTTTCCTTCTCATaGGTGGAAACCATATCCAAT | + |
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Preference number: 4 (lower is better) Translates to: YCFRALDTLFGLTNQVSLSFSFS*VETISN Trigger: ATTGGATATGGTTTCCACTCATGAGAAGGAAAAGGA...CAAGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | ATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTGATGGGAGCTCTTCTTGTAACCTCTaGCTCTGTGTTTGCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: IKCSMDEGRRHSRWFDGSSSCNL*LCVCCQ Trigger: CTGACAGCAAACACAGAGTCAGAGGTTACAAGAAGA...GCTCCCATCAAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR GCA 90 bp | TTTATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTATATGTCTGCAGAACTaGAGCATCTCCTTACGTCAT | + |
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Preference number: 4 (lower is better) Translates to: FIVSGLLTPSLVSQTRSPICLQN*SISLRH Trigger: ATGACGTAAGGAGATGCTGCAGTTCTGCAGACATAT...AGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR GCA 90 bp | TTTATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTTTTGGAACATATGTCTaGAGAACTGCAGCATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: FIVSGLLTPSLVSQTRSPFGTYV*RTAASP Trigger: AGGAGATGCTGCAGTTCTGCAGACATATGTTCCAAA...AGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CCA 90 bp | ATTTATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTATTCTGAGATGAGTTaGCCACTTTCCTCAGGTGTT | + |
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Preference number: 4 (lower is better) Translates to: IYCFRALDTLFGLTNQVSYSEMS*PLSSGV Trigger: AACACCTGAGGAAAGTGGCCAACTCATCTCAGAATA...GGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | TATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTGATGTTCGGTAATAAAGCTTaGGTAGCTCCGGCAGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: YLLNAPWMKVEGIHVGLMFGNKA*VAPAAP Trigger: CGGAGCTGCCGGAGCTACTCAAGCTTTATTACCGAA...CATCAAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | TATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTTGTTCTTTTTAACATCTTaGCCACCCTTTACAAGACTC | + |
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Preference number: 4 (lower is better) Translates to: YCFRALDTLFGLTNQVSLFFLTS*PPFTRL Trigger: GAGTCTTGTAAAGGGTGGTCAAGATGTTAAAAAGAA...CAAGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | CAAGGATTGAGGCCCATTGATGATTCTACTGTATTTATTAAATGCTCCATGGATGGGCTCTTCAGTAAGTaGTTGACTCCCTTGCTGACG | + |
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Preference number: 4 (lower is better) Translates to: QGLRPIDDSTVFIKCSMDGLFSK*LTPLLT Trigger: CGTCAGCAAGGGAGTCAATCACTTACTGAAGAGCCC...ATCCATGGAGCATTTAATAAATACAGTAGAATCATCAATGGGCCTCAATCCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR GCA 90 bp | ATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTGATGGGAGCTTTGGAACATATGTCTaGAGAACTGCAGCATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: IKCSMDEGRRHSRWFDGSFGTYV*RTAASP Trigger: AGGAGATGCTGCAGTTCTGCAGACATATGTTCCAAA...GCTCCCATCAAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | GTTCACTTATTCTTGATTTATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCTCTTGGGATGAACACTaGAAGGGCTCTTCAGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: VHLFLIYCFRALDTLFGLSWDEH*KGSSVS Trigger: ACTTACTGAAGAGCCCTTTCAGTGTTCATCCCAAGA...GAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATAAATCAAGAATAAGTGAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026461.8 |
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| CDS-3UTR TCA 90 bp | ATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTGATGGGAGCTCCTTTTCCTTCTCATaGGTGGAAACCATATCCAAT | + |
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Preference number: 4 (lower is better) Translates to: IKCSMDEGRRHSRWFDGSSFSFS*VETISN Trigger: ATTGGATATGGTTTCCACTCATGAGAAGGAAAAGGA...GCTCCCATCAAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR GCA 90 bp | ACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTTCACAGACCCAACAGTaGACACCTCTCCTTCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: TVFIKCSMDEGRRHSRWFSQTQQ*TPLLPE Trigger: TTCAGGAAGGAGAGGTGTGCACTGTTGGGTCTGTGA...AAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CCA 90 bp | GGTCTCCTTGACATAAATTACTTCTCGAAAGAAAGTTCTGCTTCAAGGATTGAGCAGCTCATCATGAATTaGTGTCTCAGGAACAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: GLLDINYFSKESSASRIEQLIMN*CLRNKG Trigger: GCCCTTGTTCCTGAGACACCAATTCATGATGAGCTG...CTCAATCCTTGAAGCAGAACTTTCTTTCGAGAAGTAATTTATGTCAAGGAGACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | CAAACTTCTGCAGTTCACTTATTCTTGATTTATTGTTTCAGGGCTCTTGACACCCTTTGCAGCTCATCATaGATTGTCTCAGGAACAAGG | + |
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Preference number: 4 (lower is better) Translates to: QTSAVHLFLIYCFRALDTLCSSS*IVSGTR Trigger: CCTTGTTCCTGAGACAATTCATGATGAGCTGCAAAG...GGTGTCAAGAGCCCTGAAACAATAAATCAAGAATAAGTGAACTGCAGAAGTTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026461.8 |
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| CDS-3UTR CCA 90 bp | GGCCCATTGATGATTCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGAACTGTGGAACTTCTaGAACCCTCTTTGCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: GPLMILLYLLNAPWMKVEELWNF*NPLCSS Trigger: TGAGCTGCAAAGAGGGTTCCAGAAGTTCCACAGTTC...TTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGAATCATCAATGGGCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CCA 90 bp | CAAGGATTGAGGCCCATTGATGATTCTACTGTATTTATTAAATGCTCCATGGATGAACTGTGGAACTTCTaGAACCCTCTTTGCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: QGLRPIDDSTVFIKCSMDELWNF*NPLCSS Trigger: TGAGCTGCAAAGAGGGTTCCAGAAGTTCCACAGTTC...ATCCATGGAGCATTTAATAAATACAGTAGAATCATCAATGGGCCTCAATCCTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | GATTCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTCTTGGGATGAACACTaGAAGGGCTCTTCAGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: DSTVFIKCSMDEGRRHSRSWDEH*KGSSVS Trigger: ACTTACTGAAGAGCCCTTTCAGTGTTCATCCCAAGA...ACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGAATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | GATTCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTCTTCTTGTAACCTCTaGCTCTGTGTTTGCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: DSTVFIKCSMDEGRRHSRSSCNL*LCVCCQ Trigger: CTGACAGCAAACACAGAGTCAGAGGTTACAAGAAGA...ACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGAATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR GCA 90 bp | CAAGGATTGAGGCCCATTGATGATTCTACTGTATTTATTAAATGCTCCATGGATATATGTCTGCAGAACTaGAGCATCTCCTTACGTCAT | + |
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Preference number: 4 (lower is better) Translates to: QGLRPIDDSTVFIKCSMDICLQN*SISLRH Trigger: ATGACGTAAGGAGATGCTGCAGTTCTGCAGACATAT...ATCCATGGAGCATTTAATAAATACAGTAGAATCATCAATGGGCCTCAATCCTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CCA 90 bp | TATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTGATGTATTCTGAGATGAGTTaGCCACTTTCCTCAGGTGTT | + |
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Preference number: 4 (lower is better) Translates to: YLLNAPWMKVEGIHVGLMYSEMS*PLSSGV Trigger: AACACCTGAGGAAAGTGGCCAACTCATCTCAGAATA...CATCAAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR TCA 90 bp | TCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTCTTTTTAACATCTTaGCCACCCTTTACAAGACTC | + |
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Preference number: 4 (lower is better) Translates to: STVFIKCSMDEGRRHSRWFFLTS*PPFTRL Trigger: GAGTCTTGTAAAGGGTGGTCAAGATGTTAAAAAGAA...CCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS CCA 90 bp | TTGACTCCCTTGCTGACGTTGACATCCAGGCGTGGGAAACAGTACTaGAGCATGACCTCCCACTCCAGCCAGGGGCCGCACTTATCGTTC | + |
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Preference number: 5 (lower is better) Translates to: LTPLLTLTSRRGKQY*SMTSHSSQGPHLSF Trigger: GAACGATAAGTGCGGCCCCTGGCTGGAGTGGGAGGTCATGCTCCAGTACTGTTTCCCACGCCTGGATGTCAACGTCAGCAAGGGAGTCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CAA 90 bp | TTTATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTCCTCTGACTCTGTGTTaGCTGTCAGCTTCATTCTCC | + |
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Preference number: 5 (lower is better) Translates to: FIVSGLLTPSLVSQTRSPPLTLC*LSASFS Trigger: GGAGAATGAAGCTGACAGCAAACACAGAGTCAGAGG...AGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CAA 90 bp | TATTGTTTCAGGGCTCTTGACACCCTCTTTGGTCTCACAAACCAGGTCTCCTTGATGAGAGTCCAGCATTaGGAACATATGTCTGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: YCFRALDTLFGLTNQVSLMRVQH*EHMSAE Trigger: TTCTGCAGACATATGTTCCAAATGCTGGACTCTCAT...CAAGGAGACCTGGTTTGTGAGACCAAAGAGGGTGTCAAGAGCCCTGAAACAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CAA 90 bp | GGCCCATTGATGATTCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAACCTCTGACTCTGTGTTaGCTGTCAGCTTCATTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GPLMILLYLLNAPWMKVEPLTLC*LSASFS Trigger: GGAGAATGAAGCTGACAGCAAACACAGAGTCAGAGG...TTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGAATCATCAATGGGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CAA 90 bp | TCTCACAAACCAGGTCTCCTTGACATAAATTACTTCTCGAAAGAAAGTTCTGCTTGTAAATCGCTCTTCTaGAGAAGTTCCCCTTTCCGG | + |
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Preference number: 5 (lower is better) Translates to: SHKPGLLDINYFSKESSACKSLF*RSSPFR Trigger: CCGGAAAGGGGAACTTCTCAAGAAGAGCGATTTACA...AGCAGAACTTTCTTTCGAGAAGTAATTTATGTCAAGGAGACCTGGTTTGTGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CAA 90 bp | GATTCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTGCAGCTCATCATGAATaGGTGTCTCAGGAACAAGGG | + |
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Preference number: 5 (lower is better) Translates to: DSTVFIKCSMDEGRRHSRAAHHE*VSQEQG Trigger: CCCTTGTTCCTGAGACACCAATTCATGATGAGCTGC...ACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGAATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178041.8 |
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| CDS-3UTR CAA 90 bp | ACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTGCAGCTCATCATGAATaGTCTCAGGAACAAGGGCTA | + |
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Preference number: 5 (lower is better) Translates to: TVFIKCSMDEGRRHSRWFAAHHE*SQEQGL Trigger: TAGCCCTTGTTCCTGAGACAATTCATGATGAGCTGC...AAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026461.8 |
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| CDS-3UTR CAA 90 bp | TCTACTGTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGATGAGAGTCCAGCATTaGGAACATATGTCTGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: STVFIKCSMDEGRRHSRWMRVQH*EHMSAE Trigger: TTCTGCAGACATATGTTCCAAATGCTGGACTCTCAT...CCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATACAGTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CAA 90 bp | CTTGACATAAATTACTTCTCGAAAGAAAGTTCTGCTTCAAGGATTGAGGCCCATCTTCACTGTATTGTGTaGATTGGGTCTGTGAGAATA | + |
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Preference number: 5 (lower is better) Translates to: LDINYFSKESSASRIEAHLHCIV*IGSVRI Trigger: TATTCTCACAGACCCAATCAACACAATACAGTGAAG...ATGGGCCTCAATCCTTGAAGCAGAACTTTCTTTCGAGAAGTAATTTATGTCAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS-3UTR CAA 90 bp | GTATTTATTAAATGCTCCATGGATGAAGGTAGAAGGCATTCACGTTGGTTTGATCTTCACTGTATTGTGTaGATTGGGTCTGTGAGAATA | + |
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Preference number: 5 (lower is better) Translates to: VFIKCSMDEGRRHSRWFDLHCIV*IGSVRI Trigger: TATTCTCACAGACCCAATCAACACAATACAGTGAAG...ATCAAACCAACGTGAATGCCTTCTACCTTCATCCATGGAGCATTTAATAAATAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS CCA 72 bp | TTGCTGACGTTGACATCCAGGCGTGGGAAACAGTACTaGAGCATGACCTCCCACTCCAGCCAGGGGCCGCAC | + |
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Preference number: 6 (lower is better) Translates to: LLTLTSRRGKQY*SMTSHSSQGPH Trigger: GTGCGGCCCCTGGCTGGAGTGGGAGGTCATGCTCCAGTACTGTTTCCCACGCCTGGATGTCAACGTCAGCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS CCA 72 bp | GTGATTGACTCCCTTGCTGACGTTGACATCCAGGCGTaGGAAACAGTACTGGAGCATGACCTCCCACTCCAG | + |
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Preference number: 6 (lower is better) Translates to: VIDSLADVDIQA*ETVLEHDLPLQ Trigger: CTGGAGTGGGAGGTCATGCTCCAGTACTGTTTCCCACGCCTGGATGTCAACGTCAGCAAGGGAGTCAATCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS TCA 72 bp | GATGAGTTGGCCACTTTCCTCAGGTGTTCCCAGCGCTaGGGTGAACTGTGGAACTTCTGGAACCCTCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: DELATFLRCSQR*GELWNFWNPLC Trigger: GCAAAGAGGGTTCCAGAAGTTCCACAGTTCACCTCAGCGCTGGGAACACCTGAGGAAAGTGGCCAACTCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS TCA 72 bp | CCAGGGGCCGCACTTATCGTTCTTCATATTCTGAGATaGGTTGGCCACTTTCCTCAGGTGTTCCCAGCGCTG | + |
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Preference number: 6 (lower is better) Translates to: PGAALIVLHILR*VGHFPQVFPAL Trigger: CAGCGCTGGGAACACCTGAGGAAAGTGGCCAACTCATCTCAGAATATGAAGAACGATAAGTGCGGCCCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026461.8 ENSMUST00000178041.8 |
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| CDS TCA 72 bp | CTGTGGAACTTCTGGAACCCTCTTTGCAGCTCATCATaGATTGGTGTCTCAGGAACAAGGGCTAAAATCTTA | + |
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Preference number: 6 (lower is better) Translates to: LWNFWNPLCSSS*IGVSGTRAKIL Trigger: TAAGATTTTAGCCCTTGTTCCTGAGACACCAATTCATGATGAGCTGCAAAGAGGGTTCCAGAAGTTCCACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178041.8 |
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