Pregenerated sensors for PRICKLE4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096549Ensembl transcript IDs: ENSMUST00000113299.6, ENSMUST00000113300.8, ENSMUST00000152214.4
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TGGCCCAGTCCGAAGTTGGACCCCAGAGCTTCCCTAACTCCTATCCCAAGATTCACAGCATTGATCATCTaGCATAGTGATGAGATAAAC | + |
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Preference number: 2 (lower is better) Translates to: WPSPKLDPRASLTPIPRFTALII*HSDEIN Trigger: GTTTATCTCATCACTATGTCAGATGATCAATGCTGT...GAATCTTGGGATAGGAGTTAGGGAAGCTCTGGGGTCCAACTTCGGACTGGGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152214.4 |
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| 3UTR CAA 72 bp | CCGGAACGTCCACGTAGCAGGTGGCCCAGTCCGAAGTaGGACCCCAGAGCTTCCCTAACTCCTATCCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: PERPRSRWPSPK*DPRASLTPIPR Trigger: TCTTGGGATAGGAGTTAGGGAAGCTCTGGGGTCCAACTTCGGACTGGGCCACCTGCTACGTGGACGTTCCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152214.4 |
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| CDS-3UTR GCA 90 bp | TGGCCCAGTCCGAAGTTGGACCCCAGAGCTTCCCTAACTCCTATCCCAAGATTCGCAAAGCAGGGTCTGTaGCAGCAGCTCTGCTCACCA | + |
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Preference number: 4 (lower is better) Translates to: WPSPKLDPRASLTPIPRFAKQGL*QQLCSP Trigger: TGGTGAGCAGAGCTGCTGGCACAGACCCTGCTTTGC...GAATCTTGGGATAGGAGTTAGGGAAGCTCTGGGGTCCAACTTCGGACTGGGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152214.4 |
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| CDS-3UTR CCA 90 bp | TGGCCCAGTCCGAAGTTGGACCCCAGAGCTTCCCTAACTCCTATCCCAAGATTCAGGTTTATGAGGCCCTaGCCACAGGCCTGGCAAGCA | + |
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Preference number: 4 (lower is better) Translates to: WPSPKLDPRASLTPIPRFRFMRP*PQAWQA Trigger: TGCTTGCCAGGCCTGTGGCCAGGGCCTCATAAACCT...GAATCTTGGGATAGGAGTTAGGGAAGCTCTGGGGTCCAACTTCGGACTGGGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152214.4 |
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| CDS-3UTR GCA 90 bp | CCCAGAGCTTCCCTAACTCCTATCCCAAGATTCAATACGGCCTTTCATGTTGATCTGTGCCAGCAGCTCTaGTCACCAGCCCTGGCCGCG | + |
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Preference number: 4 (lower is better) Translates to: PRASLTPIPRFNTAFHVDLCQQL*SPALAA Trigger: CGCGGCCAGGGCTGGTGAGCAGAGCTGCTGGCACAG...ATCAACATGAAAGGCCGTATTGAATCTTGGGATAGGAGTTAGGGAAGCTCTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152214.4 |
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| CDS-3UTR GCA 90 bp | TTGGACCCCAGAGCTTCCCTAACTCCTATCCCAAGATTCAATACGGCCTTTCATTGTGGAGGAAGCTGCTaGAGGAGAGTCCGAAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: LDPRASLTPIPRFNTAFHCGGSC*RRVRKP Trigger: TGGCTTTCGGACTCTCCTGCAGCAGCTTCCTCCACA...ATGAAAGGCCGTATTGAATCTTGGGATAGGAGTTAGGGAAGCTCTGGGGTCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152214.4 |
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| CDS-3UTR CCA 90 bp | GTTGATGTTAAGATCCTTCTAGAATTGGGCAAGCACAGCATTGATCATCTGACACCCTGGCCACAGGCCTaGCAAGCAAAGCAGGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: VDVKILLELGKHSIDHLTPWPQA*QAKQGL Trigger: CAGACCCTGCTTTGCTTGCCAGGCCTGTGGCCAGGG...TGTCAGATGATCAATGCTGTGCTTGCCCAATTCTAGAAGGATCTTAACATCAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152214.4 |
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| CDS-3UTR GCA 90 bp | GTTGATGTTAAGATCCTTCTAGAATTGGGCAAGCACAGCATTGATCATCTGACATCCTGTGGAGGAAGCTaGTGCAGGAGAGTCCGAAAG | + |
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Preference number: 4 (lower is better) Translates to: VDVKILLELGKHSIDHLTSCGGS*CRRVRK Trigger: CTTTCGGACTCTCCTGCAGCAGCTTCCTCCACAGGA...TGTCAGATGATCAATGCTGTGCTTGCCCAATTCTAGAAGGATCTTAACATCAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152214.4 |
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| CDS-3UTR CCA 90 bp | GCCTTTCATGTTGATGTTAAGATCCTTCTAGAATTGGGCAAGCACAGCATTGATTTCATCACTGTCCTGTaGAGGAAGCTGCTGCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: AFHVDVKILLELGKHSIDFITVL*RKLLQE Trigger: CTCCTGCAGCAGCTTCCTCCACAGGACAGTGATGAA...ATCAATGCTGTGCTTGCCCAATTCTAGAAGGATCTTAACATCAACATGAAAGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152214.4 |
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| CDS-3UTR CCA 90 bp | GTTGATGTTAAGATCCTTCTAGAATTGGGCAAGCACAGCATTGATCATCTGACAGATTTCTGCTTCCGCTaGGCACAGAAGAGTCGAAGT | + |
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Preference number: 4 (lower is better) Translates to: VDVKILLELGKHSIDHLTDFCFR*AQKSRS Trigger: ACTTCGACTCTTCTGTGCCCAGCGGAAGCAGAAATC...TGTCAGATGATCAATGCTGTGCTTGCCCAATTCTAGAAGGATCTTAACATCAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152214.4 |
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| CDS GCA 90 bp | CCATCCAGGGGCCCTGCGCAGTCCTGGCAGCAGAAGTGGTTCTCGTaGCAGCGCTGTCCCTCTGCTTCAGTGCAGCGCTGGGAGAAGATC | + |
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Preference number: 5 (lower is better) Translates to: PSRGPAQSWQQKWFS*QRCPSASVQRWEKI Trigger: GATCTTCTCCCAGCGCTGCACTGAAGCAGAGGGACAGCGCTGGCACGAGAACCACTTCTGCTGCCAGGACTGCGCAGGGCCCCTGGATGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CCA 90 bp | GGCAGTAGACGGGCCACCCCCTGTCCCAGGGATTTCTGCTTCCGCTaGGCACAGAAGAGTCGAAGTTGGGCCAGTTCCTCCTCCCCTAGG | + |
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Preference number: 5 (lower is better) Translates to: GSRRATPCPRDFCFR*AQKSRSWASSSSPR Trigger: CCTAGGGGAGGAGGAACTGGCCCAACTTCGACTCTTCTGTGCCCAGCGGAAGCAGAAATCCCTGGGACAGGGGGTGGCCCGTCTACTGCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 ENSMUST00000152214.4 |
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| CDS GCA 90 bp | AGCTTAGGAGGCAGTAGACGGGCCACCCCCTGTCCCAGGGATTTCTaGTTCCGCTGGGCACAGAAGAGTCGAAGTTGGGCCAGTTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: SLGGSRRATPCPRDF*FRWAQKSRSWASSS Trigger: GGAGGAACTGGCCCAACTTCGACTCTTCTGTGCCCAGCGGAAGCAGAAATCCCTGGGACAGGGGGTGGCCCGTCTACTGCCTCCTAAGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 ENSMUST00000152214.4 |
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| CDS GCA 90 bp | GCAGTCCTGGCAGCAGAAGTGGTTCTCGTGCCAGCGCTGTCCCTCTaGTTCAGTGCAGCGCTGGGAGAAGATCAGCTGGTCACAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: AVLAAEVVLVPALSL*FSAALGEDQLVTSW Trigger: CCAGCTTGTGACCAGCTGATCTTCTCCCAGCGCTGCACTGAAGCAGAGGGACAGCGCTGGCACGAGAACCACTTCTGCTGCCAGGACTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CCA 90 bp | GGCAAGCAAAGCAGGGTCTGTGCCAGCAGCTCTGCTCACCAGCCCTaGCCGCGAACACTCCATACTCCCCTGGATCCAGTAGCTTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: GKQSRVCASSSAHQP*PRTLHTPLDPVASC Trigger: GCAAGAAGCTACTGGATCCAGGGGAGTATGGAGTGTTCGCGGCCAGGGCTGGTGAGCAGAGCTGCTGGCACAGACCCTGCTTTGCTTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 ENSMUST00000152214.4 |
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| CDS TCA 90 bp | AGCCTGAGCAGAGGTATCCTCATAGTCCTCCACTGGCCGGCGGCCTaGGTCACTGTCTGTGTAGACTGGTGGATCTGGCTCCCTGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: SLSRGILIVLHWPAA*VTVCVDWWIWLPED Trigger: ATCTTCAGGGAGCCAGATCCACCAGTCTACACAGACAGTGACTCAGGCCGCCGGCCAGTGGAGGACTATGAGGATACCTCTGCTCAGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113300.8 |
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| CDS GCA 90 bp | CCGTTTGGATGCCCCATTCAGGGTTTCCAGGGTGAGAGTGGGAACTaGAGAGAGAAGCGCAGCTCGGGAGGTGATCTTGTCATCCGAGGA | + |
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Preference number: 5 (lower is better) Translates to: PFGCPIQGFQGESGN*REKRSSGGDLVIRG Trigger: TCCTCGGATGACAAGATCACCTCCCGAGCTGCGCTTCTCTCTGCAGTTCCCACTCTCACCCTGGAAACCCTGAATGGGGCATCCAAACGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CCA 90 bp | AAGTGGTTCTCGTGCCAGCGCTGTCCCTCTGCTTCAGTGCAGCGCTaGGAGAAGATCAGCTGGTCACAAGCTGGACATCGAGGTCGTAAG | + |
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Preference number: 5 (lower is better) Translates to: KWFSCQRCPSASVQR*EKISWSQAGHRGRK Trigger: CTTACGACCTCGATGTCCAGCTTGTGACCAGCTGATCTTCTCCCAGCGCTGCACTGAAGCAGAGGGACAGCGCTGGCACGAGAACCACTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CCA 90 bp | GGAGGTGATCTTGTCATCCGAGGAGGCACGGTTCCAGCCGACGCTTaGATCGGGTCCTTCTTCCTCAAAAGACGCTTGTCCTTCCGCTAC | + |
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Preference number: 5 (lower is better) Translates to: GGDLVIRGGTVPADA*IGSFFLKRRLSFRY Trigger: GTAGCGGAAGGACAAGCGTCTTTTGAGGAAGAAGGACCCGATCCAAGCGTCGGCTGGAACCGTGCCTCCTCGGATGACAAGATCACCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS TCA 90 bp | CTGTGGAGGAAGCTGCTGCAGGAGAGTCCGAAAGCCAGGCCAGTTTaGAACTTGGTTGATATCCAGGCAAGGTGGGCCCAAGCTCGAGCA | + |
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Preference number: 5 (lower is better) Translates to: LWRKLLQESPKARPV*NLVDIQARWAQARA Trigger: TGCTCGAGCTTGGGCCCACCTTGCCTGGATATCAACCAAGTTTCAAACTGGCCTGGCTTTCGGACTCTCCTGCAGCAGCTTCCTCCACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CCA 90 bp | GGAAGCTGCTGCAGGAGAGTCCGAAAGCCAGGCCAGTTTGAAACTTaGTTGATATCCAGGCAAGGTGGGCCCAAGCTCGAGCATGTAGCA | + |
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Preference number: 5 (lower is better) Translates to: GSCCRRVRKPGQFET*LISRQGGPKLEHVA Trigger: TGCTACATGCTCGAGCTTGGGCCCACCTTGCCTGGATATCAACCAAGTTTCAAACTGGCCTGGCTTTCGGACTCTCCTGCAGCAGCTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS GCA 72 bp | GGCCCTGCGCAGTCCTGGCAGCAGAAGTGGTTCTCGTaGCAGCGCTGTCCCTCTGCTTCAGTGCAGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: GPAQSWQQKWFS*QRCPSASVQRW Trigger: CCAGCGCTGCACTGAAGCAGAGGGACAGCGCTGGCACGAGAACCACTTCTGCTGCCAGGACTGCGCAGGGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CCA 72 bp | CCATCCAGGGGCCCTGCGCAGTCCTGGCAGCAGAAGTaGTTCTCGTGCCAGCGCTGTCCCTCTGCTTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: PSRGPAQSWQQK*FSCQRCPSASV Trigger: CACTGAAGCAGAGGGACAGCGCTGGCACGAGAACCACTTCTGCTGCCAGGACTGCGCAGGGCCCCTGGATGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS GCA 72 bp | GGCAGTAGACGGGCCACCCCCTGTCCCAGGGATTTCTaGTTCCGCTGGGCACAGAAGAGTCGAAGTTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: GSRRATPCPRDF*FRWAQKSRSWA Trigger: GGCCCAACTTCGACTCTTCTGTGCCCAGCGGAAGCAGAAATCCCTGGGACAGGGGGTGGCCCGTCTACTGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 ENSMUST00000152214.4 |
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| CDS CCA 72 bp | CGGGCCACCCCCTGTCCCAGGGATTTCTGCTTCCGCTaGGCACAGAAGAGTCGAAGTTGGGCCAGTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RATPCPRDFCFR*AQKSRSWASSS Trigger: GGAGGAACTGGCCCAACTTCGACTCTTCTGTGCCCAGCGGAAGCAGAAATCCCTGGGACAGGGGGTGGCCCG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 ENSMUST00000152214.4 |
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| CDS CCA 72 bp | AGCAGGGTCTGTGCCAGCAGCTCTGCTCACCAGCCCTaGCCGCGAACACTCCATACTCCCCTGGATCCAGTA | + |
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Preference number: 6 (lower is better) Translates to: SRVCASSSAHQP*PRTLHTPLDPV Trigger: TACTGGATCCAGGGGAGTATGGAGTGTTCGCGGCCAGGGCTGGTGAGCAGAGCTGCTGGCACAGACCCTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 ENSMUST00000152214.4 |
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| CDS CCA 72 bp | GCAGGGGCTGTCCTCTATGGGACTCCCGGGTGTCTGTaGGCCGTCTCTATCCTGCCGTTTGGATGCCCCATT | + |
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Preference number: 6 (lower is better) Translates to: AGAVLYGTPGCL*AVSILPFGCPI Trigger: AATGGGGCATCCAAACGGCAGGATAGAGACGGCCCACAGACACCCGGGAGTCCCATAGAGGACAGCCCCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CAA 90 bp | GTGAGAGTGGGAACTGCAGAGAGAAGCGCAGCTCGGGAGGTGATCTaGTCATCCGAGGAGGCACGGTTCCAGCCGACGCTTGGATCGGGT | + |
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Preference number: 6 (lower is better) Translates to: VRVGTAERSAAREVI*SSEEARFQPTLGSG Trigger: ACCCGATCCAAGCGTCGGCTGGAACCGTGCCTCCTCGGATGACAAGATCACCTCCCGAGCTGCGCTTCTCTCTGCAGTTCCCACTCTCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS GCA 72 bp | AGTGGTTCTCGTGCCAGCGCTGTCCCTCTGCTTCAGTaGAGCGCTGGGAGAAGATCAGCTGGTCACAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: SGSRASAVPLLQ*SAGRRSAGHKL Trigger: CAGCTTGTGACCAGCTGATCTTCTCCCAGCGCTGCACTGAAGCAGAGGGACAGCGCTGGCACGAGAACCACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CCA 72 bp | TCGTGCCAGCGCTGTCCCTCTGCTTCAGTGCAGCGCTaGGAGAAGATCAGCTGGTCACAAGCTGGACATCGA | + |
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Preference number: 6 (lower is better) Translates to: SCQRCPSASVQR*EKISWSQAGHR Trigger: TCGATGTCCAGCTTGTGACCAGCTGATCTTCTCCCAGCGCTGCACTGAAGCAGAGGGACAGCGCTGGCACGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS TCA 72 bp | AGAGGTATCCTCATAGTCCTCCACTGGCCGGCGGCCTaGGTCACTGTCTGTGTAGACTGGTGGATCTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: RGILIVLHWPAA*VTVCVDWWIWL Trigger: GAGCCAGATCCACCAGTCTACACAGACAGTGACTCAGGCCGCCGGCCAGTGGAGGACTATGAGGATACCTCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113300.8 |
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| CDS GCA 72 bp | TGCCCCATTCAGGGTTTCCAGGGTGAGAGTGGGAACTaGAGAGAGAAGCGCAGCTCGGGAGGTGATCTTGTC | + |
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Preference number: 6 (lower is better) Translates to: CPIQGFQGESGN*REKRSSGGDLV Trigger: GACAAGATCACCTCCCGAGCTGCGCTTCTCTCTGCAGTTCCCACTCTCACCCTGGAAACCCTGAATGGGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CCA 72 bp | CCCTCTGCTTCAGTGCAGCGCTGGGAGAAGATCAGCTaGTCACAAGCTGGACATCGAGGTCGTAAGAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: PSASVQRWEKIS*SQAGHRGRKSS Trigger: GGAGCTCTTACGACCTCGATGTCCAGCTTGTGACCAGCTGATCTTCTCCCAGCGCTGCACTGAAGCAGAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CAA 90 bp | AGCTGCTGCAGGAGAGTCCGAAAGCCAGGCCAGTTTGAAACTTGGTaGATATCCAGGCAAGGTGGGCCCAAGCTCGAGCATGTAGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SCCRRVRKPGQFETW*ISRQGGPKLEHVAA Trigger: GGCTGCTACATGCTCGAGCTTGGGCCCACCTTGCCTGGATATCAACCAAGTTTCAAACTGGCCTGGCTTTCGGACTCTCCTGCAGCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CAA 90 bp | CTAACAAATGGTGCAGTGCTTCCTGGAGATGTCTCTGTCATCTGCTaGCAGGTTTTCGGGGGTCTTCCAGGGCTCTGGAAGGCGCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: LTNGAVLPGDVSVIC*QVFGGLPGLWKALA Trigger: GGCCAGCGCCTTCCAGAGCCCTGGAAGACCCCCGAAAACCTGCAAGCAGATGACAGAGACATCTCCAGGAAGCACTGCACCATTTGTTAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS TCA 72 bp | GGAGAGTCCGAAAGCCAGGCCAGTTTGAAACTTGGTTaGTATCCAGGCAAGGTGGGCCCAAGCTCGAGCATG | + |
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Preference number: 6 (lower is better) Translates to: GESESQASLKLG*YPGKVGPSSSM Trigger: CATGCTCGAGCTTGGGCCCACCTTGCCTGGATATCAACCAAGTTTCAAACTGGCCTGGCTTTCGGACTCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CCA 72 bp | TGCAGGAGAGTCCGAAAGCCAGGCCAGTTTGAAACTTaGTTGATATCCAGGCAAGGTGGGCCCAAGCTCGAG | + |
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Preference number: 6 (lower is better) Translates to: CRRVRKPGQFET*LISRQGGPKLE Trigger: CTCGAGCTTGGGCCCACCTTGCCTGGATATCAACCAAGTTTCAAACTGGCCTGGCTTTCGGACTCTCCTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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| CDS CAA 72 bp | AGGAGAGTCCGAAAGCCAGGCCAGTTTGAAACTTGGTaGATATCCAGGCAAGGTGGGCCCAAGCTCGAGCAT | + |
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Preference number: 6 (lower is better) Translates to: RRVRKPGQFETW*ISRQGGPKLEH Trigger: ATGCTCGAGCTTGGGCCCACCTTGCCTGGATATCAACCAAGTTTCAAACTGGCCTGGCTTTCGGACTCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113299.6 ENSMUST00000113300.8 |
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