Pregenerated sensors for PRICKLE3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031145Ensembl transcript IDs: ENSMUST00000033485.14, ENSMUST00000129662.3
Found 110 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCGTTAGCATCGGAAATTaGGGCAAAACCATTGGATCC | + |
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Preference number: 2 (lower is better) Translates to: PFALQYQQPTSVLLEPYPVSIGN*GKTIGS Trigger: GGATCCAATGGTTTTGCCTCAATTTCCGATGCTAAC...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| 3UTR-3UTR CCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACTTGAGGCAAAACCATTaGATCCAAGAAGCCAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: QYQQPTSVLLEPYPHISYLRQNH*IQEARP Trigger: AGGCCTGGCTTCTTGGATCCAATGGTTTTGCCTCAA...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| 3UTR-3UTR TCA 90 bp | TGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGCAAGCTACAAAATGAGTaGCCCACTACAAATAACCTT | + |
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Preference number: 2 (lower is better) Translates to: WPPLWVCLDSPLLCSTSSKLQNE*PTTNNL Trigger: AAGGTTATTTGTAGTGGGTCACTCATTTTGTAGCTT...GCTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| 3UTR GCA 72 bp | CCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTaGAGTACCAGCAGCCGACATCAGTTCTGCTTGAAC | + |
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Preference number: 3 (lower is better) Translates to: PPLWVCLDSPLL*STSSRHQFCLN Trigger: GTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| 3UTR TCA 72 bp | GCTAATACAAACAAGATGGAGTGCAGAAGGGGACCATaGCTTAGTTTAGGACAATCATCATTTACACTGACT | + |
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Preference number: 3 (lower is better) Translates to: ANTNKMECRRGP*LSLGQSSFTLT Trigger: AGTCAGTGTAAATGATGATTGTCCTAAACTAAGTCATGGTCCCCTTCTGCACTCCATCTTGTTTGTATTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | TGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGCGGGTGGGGGACTTCGTaGTCTACGGCGCTGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: WPPLWVCLDSPLLCSTSSGWGTS*STALGW Trigger: CCAGCCCAGCGCCGTAGACCACGAAGTCCCCCACCC...GCTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | GTGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGGGCAGCTGGGGGTCCTaGGTGGGGGACTTCGTGGTC | + |
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Preference number: 4 (lower is better) Translates to: VATFMGVPRFPFALQYQQGSWGS*VGDFVV Trigger: GACCACGAAGTCCCCCACCCAGGACCCCCAGCTGCC...CTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | TGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGCCGGGCCCTGGAGCAGTaGTCTCAGACCCAAGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: WPPLWVCLDSPLLCSTSSRALEQ*SQTQGC Trigger: GCAGCCTTGGGTCTGAGACCACTGCTCCAGGGCCCG...GCTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | TGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGCGCTGGGGGTCCTGGGTaGGGGACTTCGTGGTCTACG | + |
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Preference number: 4 (lower is better) Translates to: WPPLWVCLDSPLLCSTSSAGGPG*GTSWST Trigger: CGTAGACCACGAAGTCCCCCACCCAGGACCCCCAGC...GCTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCGAGTGGTCCTGGGCCTaGACAGGTGAGGGGGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: PFALQYQQPTSVLLEPYPEWSWA*TGEGAV Trigger: CACTGCCCCCTCACCTGTGCAGGCCCAGGACCACTC...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR TCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCGGCGGCTCTGACGCATaGCATAGCGCTGCCCTCCTA | + |
|
Preference number: 4 (lower is better) Translates to: PFALQYQQPTSVLLEPYPGGSDA*HSAALL Trigger: TAGGAGGGCAGCGCTATGTCATGCGTCAGAGCCGCC...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR TCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCTCGGTTGAGGTGTCCTaGGTGGTCCTGGGCCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: PFALQYQQPTSVLLEPYPSVEVS*VVLGLH Trigger: GTGCAGGCCCAGGACCACTCAGGACACCTCAACCGA...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCACAGGCACCAAGGCCTaGGCGGCTGGCAAAGACTGC | + |
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Preference number: 4 (lower is better) Translates to: PFALQYQQPTSVLLEPYPTGTKA*AAGKDC Trigger: GCAGTCTTTGCCAGCCGCGCAGGCCTTGGTGCCTGT...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACGATCAGGCCTCGGCGTaGCAGGAAAGGGCGGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYDQASA*QERAAQ Trigger: CTGGGCCGCCCTTTCCTGCCACGCCGAGGCCTGATC...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | TGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGCGGCATAGAATGGCGGTaGGGGGCCCCTCTCAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: WPPLWVCLDSPLLCSTSSGIEWR*GAPLRK Trigger: CTTTCTGAGAGGGGCCCCCCACCGCCATTCTATGCC...GCTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCTGTCCTGAGTGGTCCTaGGCCTGCACAGGTGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: PFALQYQQPTSVLLEPYPCPEWS*ACTGEG Trigger: CCCCTCACCTGTGCAGGCCCAGGACCACTCAGGACA...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | TGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGCCCTCTTCCAGGGCCGTaGAGTACTGTGCCTCACTGT | + |
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Preference number: 4 (lower is better) Translates to: WPPLWVCLDSPLLCSTSSPLPGP*STVPHC Trigger: ACAGTGAGGCACAGTACTGCACGGCCCTGGAAGAGG...GCTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCGCGGCTGGCAAAGACTaGAATGTCCCCACCGCCGAT | + |
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Preference number: 4 (lower is better) Translates to: PFALQYQQPTSVLLEPYPAAGKD*NVPTAD Trigger: ATCGGCGGTGGGGACATTGCAGTCTTTGCCAGCCGC...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | GCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAGCGCTGGGCTGGAGGTaGACTAAGGGTCCTTCGTGG | + |
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Preference number: 4 (lower is better) Translates to: ALQYQQPTSVLLEPYPHIALGWR*TKGPSW Trigger: CCACGAAGGACCCTTAGTGCACCTCCAGCCCAGCGC...TATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | GCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAGGCCAGGGGATTCTGTaGGTGGCTCAGGAGCACTGC | + |
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Preference number: 4 (lower is better) Translates to: ALQYQQPTSVLLEPYPHIGQGIL*VAQEHC Trigger: GCAGTGCTCCTGAGCCACCCACAGAATCCCCTGGCC...TATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCTCTACGGCGCTGGGCTaGAGGTGCACTAAGGGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: PFALQYQQPTSVLLEPYPSTALG*RCTKGP Trigger: AGGACCCTTAGTGCACCTCCAGCCCAGCGCCGTAGA...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCAGGTGAGGGGGCAGTaGGATACGTTCCCCCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: PFALQYQQPTSVLLEPYPQVRGQ*DTFPQE Trigger: TTCCTGGGGGAACGTATCCCACTGCCCCCTCACCTG...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR TCA 90 bp | GCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAGCAGAAGCAGCGATCTaGAGCGTGCCAGTGTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: ALQYQQPTSVLLEPYPHIAEAAI*SVPVLA Trigger: GGCCAACACTGGCACGCTTCAGATCGCTGCTTCTGC...TATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | GCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATACACCGCCGATCTGCTTaGCACACTCCTCGCAGATGG | + |
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Preference number: 4 (lower is better) Translates to: ALQYQQPTSVLLEPYPHIHRRSA*HTPRRW Trigger: CCATCTGCGAGGAGTGTGGCAAGCAGATCGGCGGTG...TATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACGGATGCGGGGCAGGATaGCCAGGGGATTCTGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYGCGAG*PGDSVG Trigger: ACCCACAGAATCCCCTGGCCATCCTGCCCCGCATCC...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR TCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCGCTTCCTCTGCTGGCTaGAGGCTCGCAACTCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: PFALQYQQPTSVLLEPYPASSAG*RLATLS Trigger: AGAAAGAGTTGCGAGCCTTCAGCCAGCAGAGGAAGC...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCGATGGTGGCCATGTCTaGCAGGATGGTGGTGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: PFALQYQQPTSVLLEPYPDGGHV*QDGGGD Trigger: ATCACCACCACCATCCTGGCAGACATGGCCACCATC...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | TGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGCAGTCGTCATCGGAAATaGAGTGGCGCTGGAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: WPPLWVCLDSPLLCSTSSSRHRK*SGAGSL Trigger: CAGACTTCCAGCGCCACTCCATTTCCGATGACGACT...GCTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACCAAGGCCTGCGCGGCTaGCAAAGACTGCAATGTCCC | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYQGLRG*QRLQCP Trigger: GGGACATTGCAGTCTTTGCCAGCCGCGCAGGCCTTG...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | TGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGCACTAAGGGTCCTTCGTaGACCTCCTTCAGACACCAG | + |
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Preference number: 4 (lower is better) Translates to: WPPLWVCLDSPLLCSTSSTKGPS*TSFRHQ Trigger: CTGGTGTCTGAAGGAGGTCCACGAAGGACCCTTAGT...GCTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR TCA 90 bp | GCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAGTACACACAAAGCACTaGGGGTGCCAACAGGCACCA | + |
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Preference number: 4 (lower is better) Translates to: ALQYQQPTSVLLEPYPHIVHTKH*GCQQAP Trigger: TGGTGCCTGTTGGCACCCTCAGTGCTTTGTGTGTAC...TATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACTTCTCCCGCTTCCTCTaGTGGCTGAAGGCTCGCAAC | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYFSRFL*WLKARN Trigger: GTTGCGAGCCTTCAGCCAGCAGAGGAAGCGGGAGAA...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCGAAATGGAGTGGCGCTaGAAGTCTGAGATGAGCCGG | + |
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Preference number: 4 (lower is better) Translates to: LQYQQPTSVLLEPYPHISEMEWR*KSEMSR Trigger: CCGGCTCATCTCAGACTTCCAGCGCCACTCCATTTC...GCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACTTGAGGTGTCCTGAGTaGTCCTGGGCCTGCACAGGT | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYLRCPE*SWACTG Trigger: ACCTGTGCAGGCCCAGGACCACTCAGGACACCTCAA...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACTCTCAGACCCAAGGCTaGAGGCTCGTGAGCAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYSQTQG*RLVSRR Trigger: TCTTCTGCTCACGAGCCTGCAGCCTTGGGTCTGAGA...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | CTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTGGTACAGGTGCCTTTaGTGGCTGTCTCTGATGTCC | + |
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Preference number: 4 (lower is better) Translates to: LQYQQPTSVLLEPYPHISWYRCL*WLSLMS Trigger: GGACATCAGAGACAGCCAGCAAAGGCACCTGTACCA...GCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACGCAGCTCCTGGCACGTaGTACACACAAAGCACTGAG | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYAAPGT*YTQSTE Trigger: CTCAGTGCTTTGTGTGTACCACGTGCCAGGAGCTGC...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACAGGTGCCTTTGCTaGCTGTCTCTGATGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: LQYQQPTSVLLEPYPHISYRCLC*LSLMSP Trigger: AGGGGACATCAGAGACAGCCAGCAAAGGCACCTGTA...GCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACAAGTCACAGCGATGGTaGCCATGTCTGCCAGGATGG | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYKSQRW*PCLPGW Trigger: CCATCCTGGCAGACATGGCCACCATCGCTGTGACTT...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | GCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGACTCCTGGACAAGTaGCTGGGCTGGGGAGTTAAA | + |
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Preference number: 4 (lower is better) Translates to: ALQYQQPTSVLLEPYPHIRLLDK*LGWGVK Trigger: TTTAACTCCCCAGCCCAGCCACTTGTCCAGGAGTCT...TATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | GCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATATCATCGGAAATGGAGTaGCGCTGGAAGTCTGAGATG | + |
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Preference number: 4 (lower is better) Translates to: ALQYQQPTSVLLEPYPHISSEME*RWKSEM Trigger: CATCTCAGACTTCCAGCGCCACTCCATTTCCGATGA...TATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR CCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACTCAACCAGCAGCTCCTaGCACGTGGTACACACAAAG | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYSTSSS*HVVHTK Trigger: CTTTGTGTGTACCACGTGCCAGGAGCTGCTGGTTGA...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | TGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGCAGCTGGTGCAGTAGCTaGTTTATTCTGTATTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: WPPLWVCLDSPLLCSTSSSWCSS*FILYFS Trigger: GGAGAAATACAGAATAAAGCAGCTACTGCACCAGCT...GCTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR TCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACCCTCTGGAAGGCAACTaGAAAACTGGTAAACCTGCT | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYPLEGN*KTGKPA Trigger: AGCAGGTTTACCAGTTTTTCAGTTGCCTTCCAGAGG...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| CDS-3UTR GCA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACGCCCACAGTAGACCTTaGCAGCATGATAGAAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: QYQQPTSVLLEPYPHISYAHSRP*QHDRSR Trigger: TCTACTTCTATCATGCTGGCAAGGTCTACTGTGGGC...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
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| 3UTR CAA 72 bp | TTTTTGATGTTAGCATCGGAAATTGAGGCAAAACCATaGGATCCAAGAAGCCAGGCCTGTTTCTTTAACAAC | + |
|
Preference number: 4 (lower is better) Translates to: FLMLASEIEAKP*DPRSQACFFNN Trigger: GTTGTTAAAGAAACAGGCCTGGCTTCTTGGATCCAATGGTTTTGCCTCAATTTCCGATGCTAACATCAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS GCA 90 bp | CTGTTCCCTGCAGGAATTGCAAGGCTGGCCGCGGGCAGGGTCCTCTaGCTCTGGAGGCGCACGCCCAGAGCGGCGCCTCCGGGACCCACG | + |
|
Preference number: 5 (lower is better) Translates to: LFPAGIARLAAGRVL*LWRRTPRAAPPGPT Trigger: CGTGGGTCCCGGAGGCGCCGCTCTGGGCGTGCGCCTCCAGAGGCAGAGGACCCTGCCCGCGGCCAGCCTTGCAATTCCTGCAGGGAACAG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
||
| CDS GCA 90 bp | AGCTGCGTCGGCCGGGCCCTGGAGCAGTGGTCTCAGACCCAAGGCTaGAGGCTCGTGAGCAGAAGATCAGGCCTCGGCGTGGCAGGAAAG | + |
|
Preference number: 5 (lower is better) Translates to: SCVGRALEQWSQTQG*RLVSRRSGLGVAGK Trigger: CTTTCCTGCCACGCCGAGGCCTGATCTTCTGCTCACGAGCCTGCAGCCTTGGGTCTGAGACCACTGCTCCAGGGCCCGGCCGACGCAGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 90 bp | ATGGTGGTGGTGGTGGCAGCTGGGGGTCCTGGGTGGGGGACTTCGTaGTCTACGGCGCTGGGCTGGAGGTGCACTAAGGGTCCTTCGTGG | + |
|
Preference number: 5 (lower is better) Translates to: MVVVVAAGGPGWGTS*STALGWRCTKGPSW Trigger: CCACGAAGGACCCTTAGTGCACCTCCAGCCCAGCGCCGTAGACCACGAAGTCCCCCACCCAGGACCCCCAGCTGCCACCACCACCACCAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 90 bp | GCTGGGGGTCCTGGGTGGGGGACTTCGTGGTCTACGGCGCTGGGCTaGAGGTGCACTAAGGGTCCTTCGTGGACCTCCTTCAGACACCAG | + |
|
Preference number: 5 (lower is better) Translates to: AGGPGWGTSWSTALG*RCTKGPSWTSFRHQ Trigger: CTGGTGTCTGAAGGAGGTCCACGAAGGACCCTTAGTGCACCTCCAGCCCAGCGCCGTAGACCACGAAGTCCCCCACCCAGGACCCCCAGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS GCA 90 bp | GGTCCTGGGTGGGGGACTTCGTGGTCTACGGCGCTGGGCTGGAGGTaGACTAAGGGTCCTTCGTGGACCTCCTTCAGACACCAGAGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: GPGWGTSWSTALGWR*TKGPSWTSFRHQRV Trigger: GACCCTCTGGTGTCTGAAGGAGGTCCACGAAGGACCCTTAGTGCACCTCCAGCCCAGCGCCGTAGACCACGAAGTCCCCCACCCAGGACC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 90 bp | GGCTCAGGAGCACTGCGGAGTCCCAGTTCAGGCATAGAATGGCGGTaGGGGGCCCCTCTCAGAAAGTGGGAGGGCTCTTCAGGGCCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: GSGALRSPSSGIEWR*GAPLRKWEGSSGPA Trigger: TGCAGGCCCTGAAGAGCCCTCCCACTTTCTGAGAGGGGCCCCCCACCGCCATTCTATGCCTGAACTGGGACTCCGCAGTGCTCCTGAGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS TCA 90 bp | GGCGGGCCTCATAGCAGGCACAGCAGTGGGGGCGGCTCTGACGCATaGCATAGCGCTGCCCTCCTAACGAAGCTTCACACTCGAAACAGC | + |
|
Preference number: 5 (lower is better) Translates to: GGPHSRHSSGGGSDA*HSAALLTKLHTRNS Trigger: GCTGTTTCGAGTGTGAAGCTTCGTTAGGAGGGCAGCGCTATGTCATGCGTCAGAGCCGCCCCCACTGCTGTGCCTGCTATGAGGCCCGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS GCA 90 bp | AGATCTTTCTCCAGCCATGCAGCAGGAAGCCTGGGCACTGTTCCCTaGAGGAATTGCAAGGCTGGCCGCGGGCAGGGTCCTCTGCCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: RSFSSHAAGSLGTVP*RNCKAGRGQGPLPL Trigger: CAGAGGCAGAGGACCCTGCCCGCGGCCAGCCTTGCAATTCCTGCAGGGAACAGTGCCCAGGCTTCCTGCTGCATGGCTGGAGAAAGATCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
||
| CDS GCA 90 bp | CTGAATCTGAACCTGATCCCAAGTCACAGCGATGGTGGCCATGTCTaGCAGGATGGTGGTGGTGATGGTGGCTCCCTCGGCGGCGGTGCC | + |
|
Preference number: 5 (lower is better) Translates to: LNLNLIPSHSDGGHV*QDGGGDGGSLGGGA Trigger: GGCACCGCCGCCGAGGGAGCCACCATCACCACCACCATCCTGGCAGACATGGCCACCATCGCTGTGACTTGGGATCAGGTTCAGATTCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 90 bp | TCGTGGTCTACGGCGCTGGGCTGGAGGTGCACTAAGGGTCCTTCGTaGACCTCCTTCAGACACCAGAGGGTCTCGGAAGCTGACACGAGG | + |
|
Preference number: 5 (lower is better) Translates to: SWSTALGWRCTKGPS*TSFRHQRVSEADTR Trigger: CCTCGTGTCAGCTTCCGAGACCCTCTGGTGTCTGAAGGAGGTCCACGAAGGACCCTTAGTGCACCTCCAGCCCAGCGCCGTAGACCACGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS TCA 90 bp | AGACTCCTGGACAAGTGGCTGGGCTGGGGAGTTAAAGGTTTCGGTTaGGGTGTCCTGAGTGGTCCTGGGCCTGCACAGGTGAGGGGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RLLDKWLGWGVKGFG*GVLSGPGPAQVRGQ Trigger: CTGCCCCCTCACCTGTGCAGGCCCAGGACCACTCAGGACACCTCAACCGAAACCTTTAACTCCCCAGCCCAGCCACTTGTCCAGGAGTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS TCA 90 bp | GCCACGATGCAGTTCTTGTCCCGGGTCTGGCGAGGCATCACGGGGTaGGACTCCTGGACAAGTGGCTGGGCTGGGGAGTTAAAGGTTTCG | + |
|
Preference number: 5 (lower is better) Translates to: ATMQFLSRVWRGITG*DSWTSGWAGELKVS Trigger: CGAAACCTTTAACTCCCCAGCCCAGCCACTTGTCCAGGAGTCTCACCCCGTGATGCCTCGCCAGACCCGGGACAAGAACTGCATCGTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 90 bp | TTTGCAGTGCTGGCAGATCTTTCTCCAGCCATGCAGCAGGAAGCCTaGGCACTGTTCCCTGCAGGAATTGCAAGGCTGGCCGCGGGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: FAVLADLSPAMQQEA*ALFPAGIARLAAGR Trigger: CCTGCCCGCGGCCAGCCTTGCAATTCCTGCAGGGAACAGTGCCCAGGCTTCCTGCTGCATGGCTGGAGAAAGATCTGCCAGCACTGCAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
||
| CDS CCA 90 bp | ACACAAAGCACTGAGGGTGCCAACAGGCACCAAGGCCTGCGCGGCTaGCAAAGACTGCAATGTCCCCACCGCCGATCTGCTTGCCACACT | + |
|
Preference number: 5 (lower is better) Translates to: TQSTEGANRHQGLRG*QRLQCPHRRSACHT Trigger: AGTGTGGCAAGCAGATCGGCGGTGGGGACATTGCAGTCTTTGCCAGCCGCGCAGGCCTTGGTGCCTGTTGGCACCCTCAGTGCTTTGTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS TCA 90 bp | TTCGAACGGTGGCTCGTCCCAGATTCTCCCGCTTCCTCTGCTGGCTaGAGGCTCGCAACTCTTTCTTCTCCTCCTCTTCCAGGGCCGTGC | + |
|
Preference number: 5 (lower is better) Translates to: FERWLVPDSPASSAG*RLATLSSPPLPGPC Trigger: GCACGGCCCTGGAAGAGGAGGAGAAGAAAGAGTTGCGAGCCTTCAGCCAGCAGAGGAAGCGGGAGAATCTGGGACGAGCCACCGTTCGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS GCA 90 bp | GGTCCACAGGTACAGTGCGTACAGCATGCTCCTCCCGCGGGCATTTaGAGTGCTGGCAGATCTTTCTCCAGCCATGCAGCAGGAAGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: GPQVQCVQHAPPAGI*SAGRSFSSHAAGSL Trigger: CAGGCTTCCTGCTGCATGGCTGGAGAAAGATCTGCCAGCACTGCAAATGCCCGCGGGAGGAGCATGCTGTACGCACTGTACCTGTGGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
||
| CDS CCA 90 bp | GTACTTTGGCGACCAAAGGCATTATCATCTGGATGCGGGGCAGGATaGCCAGGGGATTCTGTGGGTGGCTCAGGAGCACTGCGGAGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: VLWRPKALSSGCGAG*PGDSVGGSGALRSP Trigger: GGGACTCCGCAGTGCTCCTGAGCCACCCACAGAATCCCCTGGCCATCCTGCCCCGCATCCAGATGATAATGCCTTTGGTCGCCAAAGTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS-3UTR CAA 90 bp | CCCTTTGCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCGCCACGATGCAGTTCTaGTCCCGGGTCTGGCGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: PFALQYQQPTSVLLEPYPATMQF*SRVWRG Trigger: GCCTCGCCAGACCCGGGACAAGAACTGCATCGTGGC...GGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGCAAAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
||
| CDS GCA 90 bp | CGGCACATGATGCGTTCTAGGTCCACAGGTACAGTGCGTACAGCATaGTCCTCCCGCGGGCATTTGCAGTGCTGGCAGATCTTTCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: RHMMRSRSTGTVRTA*SSRGHLQCWQIFLQ Trigger: CTGGAGAAAGATCTGCCAGCACTGCAAATGCCCGCGGGAGGAGCATGCTGTACGCACTGTACCTGTGGACCTAGAACGCATCATGTGCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
||
| CDS GCA 90 bp | GGGAAGATTCGAACGGTGGCTCGTCCCAGATTCTCCCGCTTCCTCTaGTGGCTGAAGGCTCGCAACTCTTTCTTCTCCTCCTCTTCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: GKIRTVARPRFSRFL*WLKARNSFFSSSSR Trigger: CCTGGAAGAGGAGGAGAAGAAAGAGTTGCGAGCCTTCAGCCAGCAGAGGAAGCGGGAGAATCTGGGACGAGCCACCGTTCGAATCTTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 90 bp | AAGATTCGAACGGTGGCTCGTCCCAGATTCTCCCGCTTCCTCTGCTaGCTGAAGGCTCGCAACTCTTTCTTCTCCTCCTCTTCCAGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: KIRTVARPRFSRFLC*LKARNSFFSSSSRA Trigger: GGCCCTGGAAGAGGAGGAGAAGAAAGAGTTGCGAGCCTTCAGCCAGCAGAGGAAGCGGGAGAATCTGGGACGAGCCACCGTTCGAATCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 90 bp | GATCTGCTTGCCACACTCCTCGCAGATGGCCCCAGTAATGGTCACTaGGAAGATTCGAACGGTGGCTCGTCCCAGATTCTCCCGCTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: DLLATLLADGPSNGH*EDSNGGSSQILPLP Trigger: AGGAAGCGGGAGAATCTGGGACGAGCCACCGTTCGAATCTTCCCAGTGACCATTACTGGGGCCATCTGCGAGGAGTGTGGCAAGCAGATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 90 bp | TCCTCTGAGGCACAGCCTGAGTCGTCATCGGAAATGGAGTGGCGCTaGAAGTCTGAGATGAGCCGGCACATGATGCGTTCTAGGTCCACA | + |
|
Preference number: 5 (lower is better) Translates to: SSEAQPESSSEMEWR*KSEMSRHMMRSRST Trigger: TGTGGACCTAGAACGCATCATGTGCCGGCTCATCTCAGACTTCCAGCGCCACTCCATTTCCGATGACGACTCAGGCTGTGCCTCAGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
||
| CDS CCA 90 bp | CCTTCAGACACCAGAGGGTCTCGGAAGCTGACACGAGGTGTACTTTaGCGACCAAAGGCATTATCATCTGGATGCGGGGCAGGATGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: PSDTRGSRKLTRGVL*RPKALSSGCGAGWP Trigger: TGGCCATCCTGCCCCGCATCCAGATGATAATGCCTTTGGTCGCCAAAGTACACCTCGTGTCAGCTTCCGAGACCCTCTGGTGTCTGAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS-3UTR CAA 90 bp | CAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAAGCTACCCACCGCCGATCTGCTaGCCACACTCCTCGCAGATG | + |
|
Preference number: 5 (lower is better) Translates to: QYQQPTSVLLEPYPHISYPPPIC*PHSSQM Trigger: CATCTGCGAGGAGTGTGGCAAGCAGATCGGCGGTGG...GTAGCTTATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
||
| CDS-3UTR CAA 90 bp | GCTCTGCAGTACCAGCAGCCGACATCAGTTCTGCTTGAACCATATCCCCACATAGCAGCAGGCTCTGCCTaGGTACAGGTGCCTTTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: ALQYQQPTSVLLEPYPHIAAGSA*VQVPLL Trigger: CAGCAAAGGCACCTGTACCAAGGCAGAGCCTGCTGC...TATGTGGGGATATGGTTCAAGCAGAACTGATGTCGGCTGCTGGTACTGCAGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
||
| CDS TCA 90 bp | GGGTCCTTCGTGGACCTCCTTCAGACACCAGAGGGTCTCGGAAGCTaGCACGAGGTGTACTTTGGCGACCAAAGGCATTATCATCTGGAT | + |
|
Preference number: 5 (lower is better) Translates to: GSFVDLLQTPEGLGS*HEVYFGDQRHYHLD Trigger: ATCCAGATGATAATGCCTTTGGTCGCCAAAGTACACCTCGTGTCAGCTTCCGAGACCCTCTGGTGTCTGAAGGAGGTCCACGAAGGACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 90 bp | TACGTTCCCCCAGGAAGAAGCCATCATCCTCAGAAGACTCTGAACTaGGGCTGGAGGGTGAGCTGGAGCAAGATCCTGAATCTGAACCTG | + |
|
Preference number: 5 (lower is better) Translates to: YVPPGRSHHPQKTLN*GWRVSWSKILNLNL Trigger: CAGGTTCAGATTCAGGATCTTGCTCCAGCTCACCCTCCAGCCCCAGTTCAGAGTCTTCTGAGGATGATGGCTTCTTCCTGGGGGAACGTA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS-3UTR CAA 90 bp | GTGGCCACCTTTATGGGTGTGCCTAGATTCCCCTTTGCTCTGCAGTACCAGCAGTTGGTACAGGTGCCTTaGCTGGCTGTCTCTGATGTC | + |
|
Preference number: 5 (lower is better) Translates to: VATFMGVPRFPFALQYQQLVQVP*LAVSDV Trigger: GACATCAGAGACAGCCAGCAAAGGCACCTGTACCAA...CTGCTGGTACTGCAGAGCAAAGGGGAATCTAGGCACACCCATAAAGGTGGCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129662.3 |
||
| CDS CCA 90 bp | AGCCATCATCCTCAGAAGACTCTGAACTGGGGCTGGAGGGTGAGCTaGAGCAAGATCCTGAATCTGAACCTGATCCCAAGTCACAGCGAT | + |
|
Preference number: 5 (lower is better) Translates to: SHHPQKTLNWGWRVS*SKILNLNLIPSHSD Trigger: ATCGCTGTGACTTGGGATCAGGTTCAGATTCAGGATCTTGCTCCAGCTCACCCTCCAGCCCCAGTTCAGAGTCTTCTGAGGATGATGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS GCA 72 bp | GCAGGAATTGCAAGGCTGGCCGCGGGCAGGGTCCTCTaGCTCTGGAGGCGCACGCCCAGAGCGGCGCCTCCG | + |
|
Preference number: 6 (lower is better) Translates to: AGIARLAAGRVL*LWRRTPRAAPP Trigger: CGGAGGCGCCGCTCTGGGCGTGCGCCTCCAGAGGCAGAGGACCCTGCCCGCGGCCAGCCTTGCAATTCCTGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
||
| CDS GCA 72 bp | GGCCGGGCCCTGGAGCAGTGGTCTCAGACCCAAGGCTaGAGGCTCGTGAGCAGAAGATCAGGCCTCGGCGTG | + |
|
Preference number: 6 (lower is better) Translates to: GRALEQWSQTQG*RLVSRRSGLGV Trigger: CACGCCGAGGCCTGATCTTCTGCTCACGAGCCTGCAGCCTTGGGTCTGAGACCACTGCTCCAGGGCCCGGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 72 bp | AAGCCTGGGCACTGTTCCCTGCAGGAATTGCAAGGCTaGCCGCGGGCAGGGTCCTCTGCCTCTGGAGGCGCA | + |
|
Preference number: 6 (lower is better) Translates to: KPGHCSLQELQG*PRAGSSASGGA Trigger: TGCGCCTCCAGAGGCAGAGGACCCTGCCCGCGGCCAGCCTTGCAATTCCTGCAGGGAACAGTGCCCAGGCTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
||
| CDS GCA 72 bp | TCCAGCCATGCAGCAGGAAGCCTGGGCACTGTTCCCTaGAGGAATTGCAAGGCTGGCCGCGGGCAGGGTCCT | + |
|
Preference number: 6 (lower is better) Translates to: SSHAAGSLGTVP*RNCKAGRGQGP Trigger: AGGACCCTGCCCGCGGCCAGCCTTGCAATTCCTGCAGGGAACAGTGCCCAGGCTTCCTGCTGCATGGCTGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
||
| CDS CCA 72 bp | CCTGGGTGGGGGACTTCGTGGTCTACGGCGCTGGGCTaGAGGTGCACTAAGGGTCCTTCGTGGACCTCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: PGWGTSWSTALG*RCTKGPSWTSF Trigger: GAAGGAGGTCCACGAAGGACCCTTAGTGCACCTCCAGCCCAGCGCCGTAGACCACGAAGTCCCCCACCCAGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 72 bp | TGGATGCGGGGCAGGATGGCCAGGGGATTCTGTGGGTaGCTCAGGAGCACTGCGGAGTCCCAGTTCAGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: WMRGRMARGFCG*LRSTAESQFRH Trigger: ATGCCTGAACTGGGACTCCGCAGTGCTCCTGAGCCACCCACAGAATCCCCTGGCCATCCTGCCCCGCATCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 72 bp | CATCTGGATGCGGGGCAGGATGGCCAGGGGATTCTGTaGGTGGCTCAGGAGCACTGCGGAGTCCCAGTTCAG | + |
|
Preference number: 6 (lower is better) Translates to: HLDAGQDGQGIL*VAQEHCGVPVQ Trigger: CTGAACTGGGACTCCGCAGTGCTCCTGAGCCACCCACAGAATCCCCTGGCCATCCTGCCCCGCATCCAGATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS TCA 72 bp | CAGTTCTTGTCCCGGGTCTGGCGAGGCATCACGGGGTaGGACTCCTGGACAAGTGGCTGGGCTGGGGAGTTA | + |
|
Preference number: 6 (lower is better) Translates to: QFLSRVWRGITG*DSWTSGWAGEL Trigger: TAACTCCCCAGCCCAGCCACTTGTCCAGGAGTCTCACCCCGTGATGCCTCGCCAGACCCGGGACAAGAACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS GCA 72 bp | TGGGGGACTTCGTGGTCTACGGCGCTGGGCTGGAGGTaGACTAAGGGTCCTTCGTGGACCTCCTTCAGACAC | + |
|
Preference number: 6 (lower is better) Translates to: WGTSWSTALGWR*TKGPSWTSFRH Trigger: GTGTCTGAAGGAGGTCCACGAAGGACCCTTAGTGCACCTCCAGCCCAGCGCCGTAGACCACGAAGTCCCCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS GCA 72 bp | AGGTTTCGGTTGAGGTGTCCTGAGTGGTCCTGGGCCTaGACAGGTGAGGGGGCAGTGGGATACGTTCCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: RFRLRCPEWSWA*TGEGAVGYVPP Trigger: TGGGGGAACGTATCCCACTGCCCCCTCACCTGTGCAGGCCCAGGACCACTCAGGACACCTCAACCGAAACCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 72 bp | GGGAGGGCTCTTCAGGGCCTGCAGCAGGCTCTGCCTTaGTACAGGTGCCTTTGCTGGCTGTCTCTGATGTCC | + |
|
Preference number: 6 (lower is better) Translates to: GRALQGLQQALP*YRCLCWLSLMS Trigger: GGACATCAGAGACAGCCAGCAAAGGCACCTGTACCAAGGCAGAGCCTGCTGCAGGCCCTGAAGAGCCCTCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 72 bp | GCACTGCGGAGTCCCAGTTCAGGCATAGAATGGCGGTaGGGGGCCCCTCTCAGAAAGTGGGAGGGCTCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: ALRSPSSGIEWR*GAPLRKWEGSS Trigger: TGAAGAGCCCTCCCACTTTCTGAGAGGGGCCCCCCACCGCCATTCTATGCCTGAACTGGGACTCCGCAGTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CCA 72 bp | ACGGCGCTGGGCTGGAGGTGCACTAAGGGTCCTTCGTaGACCTCCTTCAGACACCAGAGGGTCTCGGAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: TALGWRCTKGPS*TSFRHQRVSEA Trigger: AGCTTCCGAGACCCTCTGGTGTCTGAAGGAGGTCCACGAAGGACCCTTAGTGCACCTCCAGCCCAGCGCCGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS CAA 72 bp | GGGCCTGCAGCAGGCTCTGCCTTGGTACAGGTGCCTTaGCTGGCTGTCTCTGATGTCCCCTCCGTAGCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: GPAAGSALVQVP*LAVSDVPSVAE Trigger: CTCAGCTACGGAGGGGACATCAGAGACAGCCAGCAAAGGCACCTGTACCAAGGCAGAGCCTGCTGCAGGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS GCA 72 bp | CGGCTGGCAAAGACTGCAATGTCCCCACCGCCGATCTaGTTGCCACACTCCTCGCAGATGGCCCCAGTAATG | + |
|
Preference number: 6 (lower is better) Translates to: RLAKTAMSPPPI*LPHSSQMAPVM Trigger: CATTACTGGGGCCATCTGCGAGGAGTGTGGCAAGCAGATCGGCGGTGGGGACATTGCAGTCTTTGCCAGCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
||
| CDS GCA 72 bp | GTGCGTACAGCATGCTCCTCCCGCGGGCATTTGCAGTaGTGGCAGATCTTTCTCCAGCCATGCAGCAGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: VRTACSSRGHLQ*WQIFLQPCSRK Trigger: CTTCCTGCTGCATGGCTGGAGAAAGATCTGCCAGCACTGCAAATGCCCGCGGGAGGAGCATGCTGTACGCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
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| CDS GCA 72 bp | CGAACGGTGGCTCGTCCCAGATTCTCCCGCTTCCTCTaGTGGCTGAAGGCTCGCAACTCTTTCTTCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RTVARPRFSRFL*WLKARNSFFSS Trigger: GGAGGAGAAGAAAGAGTTGCGAGCCTTCAGCCAGCAGAGGAAGCGGGAGAATCTGGGACGAGCCACCGTTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CCA 72 bp | CGACCAAAGGCATTATCATCTGGATGCGGGGCAGGATaGCCAGGGGATTCTGTGGGTGGCTCAGGAGCACTG | + |
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Preference number: 6 (lower is better) Translates to: RPKALSSGCGAG*PGDSVGGSGAL Trigger: CAGTGCTCCTGAGCCACCCACAGAATCCCCTGGCCATCCTGCCCCGCATCCAGATGATAATGCCTTTGGTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CAA 72 bp | GGTACAGTGCGTACAGCATGCTCCTCCCGCGGGCATTaGCAGTGCTGGCAGATCTTTCTCCAGCCATGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GTVRTACSSRGH*QCWQIFLQPCS Trigger: GCTGCATGGCTGGAGAAAGATCTGCCAGCACTGCAAATGCCCGCGGGAGGAGCATGCTGTACGCACTGTACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
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| CDS CAA 90 bp | AGGTCCACAGGTACAGTGCGTACAGCATGCTCCTCCCGCGGGCATTaGCAGTGCTGGCAGATCTTTCTCCAGCCATGCAGCAGGAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: RSTGTVRTACSSRGH*QCWQIFLQPCSRKP Trigger: AGGCTTCCTGCTGCATGGCTGGAGAAAGATCTGCCAGCACTGCAAATGCCCGCGGGAGGAGCATGCTGTACGCACTGTACCTGTGGACCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
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| CDS CAA 90 bp | GGCTCTTCAGGGCCTGCAGCAGGCTCTGCCTTGGTACAGGTGCCTTaGCTGGCTGTCTCTGATGTCCCCTCCGTAGCTGAGAAAGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: GSSGPAAGSALVQVP*LAVSDVPSVAEKEA Trigger: AGCTTCTTTCTCAGCTACGGAGGGGACATCAGAGACAGCCAGCAAAGGCACCTGTACCAAGGCAGAGCCTGCTGCAGGCCCTGAAGAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS GCA 72 bp | GTACAGTGCGTACAGCATGCTCCTCCCGCGGGCATTTaGAGTGCTGGCAGATCTTTCTCCAGCCATGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: VQCVQHAPPAGI*SAGRSFSSHAA Trigger: TGCTGCATGGCTGGAGAAAGATCTGCCAGCACTGCAAATGCCCGCGGGAGGAGCATGCTGTACGCACTGTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
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| CDS GCA 72 bp | ATGCGTTCTAGGTCCACAGGTACAGTGCGTACAGCATaGTCCTCCCGCGGGCATTTGCAGTGCTGGCAGATC | + |
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Preference number: 6 (lower is better) Translates to: MRSRSTGTVRTA*SSRGHLQCWQI Trigger: GATCTGCCAGCACTGCAAATGCCCGCGGGAGGAGCATGCTGTACGCACTGTACCTGTGGACCTAGAACGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033485.14 |
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| CDS GCA 72 bp | GGTGTACTTTGGCGACCAAAGGCATTATCATCTGGATaGGGGGCAGGATGGCCAGGGGATTCTGTGGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: GVLWRPKALSSG*GAGWPGDSVGG Trigger: GCCACCCACAGAATCCCCTGGCCATCCTGCCCCGCATCCAGATGATAATGCCTTTGGTCGCCAAAGTACACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CCA 72 bp | ACGGTGGCTCGTCCCAGATTCTCCCGCTTCCTCTGCTaGCTGAAGGCTCGCAACTCTTTCTTCTCCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: TVARPRFSRFLC*LKARNSFFSSS Trigger: AGAGGAGGAGAAGAAAGAGTTGCGAGCCTTCAGCCAGCAGAGGAAGCGGGAGAATCTGGGACGAGCCACCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CCA 72 bp | GCCACACTCCTCGCAGATGGCCCCAGTAATGGTCACTaGGAAGATTCGAACGGTGGCTCGTCCCAGATTCTC | + |
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Preference number: 6 (lower is better) Translates to: ATLLADGPSNGH*EDSNGGSSQIL Trigger: GAGAATCTGGGACGAGCCACCGTTCGAATCTTCCCAGTGACCATTACTGGGGCCATCTGCGAGGAGTGTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CAA 90 bp | TCCTTCAGACACCAGAGGGTCTCGGAAGCTGACACGAGGTGTACTTaGGCGACCAAAGGCATTATCATCTGGATGCGGGGCAGGATGGCC | + |
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Preference number: 6 (lower is better) Translates to: SFRHQRVSEADTRCT*ATKGIIIWMRGRMA Trigger: GGCCATCCTGCCCCGCATCCAGATGATAATGCCTTTGGTCGCCAAAGTACACCTCGTGTCAGCTTCCGAGACCCTCTGGTGTCTGAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CCA 72 bp | GTACATTCAGGGGAGAAGATGATCTCATCACACGCTTaGCAGCGAGGACGCAGACACTCAGCATGGTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: VHSGEKMISSHA*QRGRRHSAWWR Trigger: GCGCCACCATGCTGAGTGTCTGCGTCCTCGCTGCCAAGCGTGTGATGAGATCATCTTCTCCCCTGAATGTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CCA 72 bp | ACGAGGTGTACTTTGGCGACCAAAGGCATTATCATCTaGATGCGGGGCAGGATGGCCAGGGGATTCTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: TRCTLATKGIII*MRGRMARGFCG Trigger: CCCACAGAATCCCCTGGCCATCCTGCCCCGCATCCAGATGATAATGCCTTTGGTCGCCAAAGTACACCTCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CAA 72 bp | CGTACATTCAGGGGAGAAGATGATCTCATCACACGCTaGGCAGCGAGGACGCAGACACTCAGCATGGTGGCG | + |
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Preference number: 6 (lower is better) Translates to: RTFRGEDDLITR*AARTQTLSMVA Trigger: CGCCACCATGCTGAGTGTCTGCGTCCTCGCTGCCAAGCGTGTGATGAGATCATCTTCTCCCCTGAATGTACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CAA 72 bp | CACCAGAGGGTCTCGGAAGCTGACACGAGGTGTACTTaGGCGACCAAAGGCATTATCATCTGGATGCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: HQRVSEADTRCT*ATKGIIIWMRG Trigger: GCCCCGCATCCAGATGATAATGCCTTTGGTCGCCAAAGTACACCTCGTGTCAGCTTCCGAGACCCTCTGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CCA 72 bp | ACCAGAGGGTCTCGGAAGCTGACACGAGGTGTACTTTaGCGACCAAAGGCATTATCATCTGGATGCGGGGCA | + |
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Preference number: 6 (lower is better) Translates to: TRGSRKLTRGVL*RPKALSSGCGA Trigger: TGCCCCGCATCCAGATGATAATGCCTTTGGTCGCCAAAGTACACCTCGTGTCAGCTTCCGAGACCCTCTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS TCA 72 bp | GTGGACCTCCTTCAGACACCAGAGGGTCTCGGAAGCTaGCACGAGGTGTACTTTGGCGACCAAAGGCATTAT | + |
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Preference number: 6 (lower is better) Translates to: VDLLQTPEGLGS*HEVYFGDQRHY Trigger: ATAATGCCTTTGGTCGCCAAAGTACACCTCGTGTCAGCTTCCGAGACCCTCTGGTGTCTGAAGGAGGTCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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| CDS CCA 72 bp | CCTCAGAAGACTCTGAACTGGGGCTGGAGGGTGAGCTaGAGCAAGATCCTGAATCTGAACCTGATCCCAAGT | + |
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Preference number: 6 (lower is better) Translates to: PQKTLNWGWRVS*SKILNLNLIPS Trigger: ACTTGGGATCAGGTTCAGATTCAGGATCTTGCTCCAGCTCACCCTCCAGCCCCAGTTCAGAGTCTTCTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033485.14 ENSMUST00000129662.3 |
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