Pregenerated sensors for PRG4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006014Ensembl transcript IDs: ENSMUST00000006171.16, ENSMUST00000111901.9, ENSMUST00000111902.9, ENSMUST00000159035.2, ENSMUST00000161320.8, ENSMUST00000161611.8, ENSMUST00000162367.8, ENSMUST00000164600.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGTGGTGACTTTGCTGTGTGGAGTAGTAGGAGGGTCAGGAGGAGGTaGGGTGAGCTTGAACTCACCATTATCCAGCCCGCTTCCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: CGDFAVWSSRRVRRR*GELELTIIQPASSF Trigger: GAAGCTGGAAGCGGGCTGGATAATGGTGAGTTCAAGCTCACCCCACCTCCTCCTGACCCTCCTACTACTCCACACAGCAAAGTCACCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS CCA 90 bp | TGGTTTTGCTGCTGTAGTCTTGGGAGATGTGGTGACTTTGCTGTGTaGAGTAGTAGGAGGGTCAGGAGGAGGTGGGGTGAGCTTGAACTC | + |
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Preference number: 5 (lower is better) Translates to: WFCCCSLGRCGDFAV*SSRRVRRRWGELEL Trigger: GAGTTCAAGCTCACCCCACCTCCTCCTGACCCTCCTACTACTCCACACAGCAAAGTCACCACATCTCCCAAGACTACAGCAGCAAAACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS TCA 90 bp | AGCGAAGGACTCGAAGCAGCGTCCTTTGCAGGAGAGCTCTTGAGATaGAACCTGTTGAATCAAGACAACAGGAAGCAGCAGCGACAAGCA | + |
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Preference number: 5 (lower is better) Translates to: SEGLEAASFAGELLR*NLLNQDNRKQQRQA Trigger: TGCTTGTCGCTGCTGCTTCCTGTTGTCTTGATTCAACAGGTTTCATCTCAAGAGCTCTCCTGCAAAGGACGCTGCTTCGAGTCCTTCGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111902.9 ENSMUST00000159035.2 ENSMUST00000161320.8 |
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| CDS CCA 90 bp | CACCGAGTAGTTGATGGCAGGCCGCCTCCCTGTGCACTTCTTCATTaGCTCCTGTTTATAAGTGTACTGCTGAATGTTGCCACCTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: HRVVDGRPPPCALLH*LLFISVLLNVATSL Trigger: AAGAGAGGTGGCAACATTCAGCAGTACACTTATAAACAGGAGCCAATGAAGAAGTGCACAGGGAGGCGGCCTGCCATCAACTACTCGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS TCA 90 bp | CTTTGTCTTGATAAGAAACTCTCATGGGCACCGAGTAATGGATCCTaGAGGTGTGTGTCTGGAAAGGTCCAACAGCACGCTCAAAGCGGC | + |
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Preference number: 5 (lower is better) Translates to: LCLDKKLSWAPSNGS*RCVSGKVQQHAQSG Trigger: GCCGCTTTGAGCGTGCTGTTGGACCTTTCCAGACACACACCTTCAGGATCCATTACTCGGTGCCCATGAGAGTTTCTTATCAAGACAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS GCA 90 bp | CTCAGAATTAGGTGCAAGACTGGGTTTAGGAGTTACTGGTTTTGCTaGTGTAGTCTTGGGAGATGTGGTGACTTTGCTGTGTGGAGTAGT | + |
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Preference number: 5 (lower is better) Translates to: LRIRCKTGFRSYWFC*CSLGRCGDFAVWSS Trigger: ACTACTCCACACAGCAAAGTCACCACATCTCCCAAGACTACAGCAGCAAAACCAGTAACTCCTAAACCCAGTCTTGCACCTAATTCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS GCA 90 bp | TGTCTCAGAATTAGGTGCAAGACTGGGTTTAGGAGTTACTGGTTTTaGTGCTGTAGTCTTGGGAGATGTGGTGACTTTGCTGTGTGGAGT | + |
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Preference number: 5 (lower is better) Translates to: CLRIRCKTGFRSYWF*CCSLGRCGDFAVWS Trigger: ACTCCACACAGCAAAGTCACCACATCTCCCAAGACTACAGCAGCAAAACCAGTAACTCCTAAACCCAGTCTTGCACCTAATTCTGAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS CCA 90 bp | AGGAGAGGGAATACCCCAAACTTCGGTAATTCTGCGTGGTGGAGATaGTGGTCTGAATGGATTCAGCATCCAGAAATAATGACCTCGAAA | + |
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Preference number: 5 (lower is better) Translates to: RRGNTPNFGNSAWWR*WSEWIQHPEIMTSK Trigger: TTTCGAGGTCATTATTTCTGGATGCTGAATCCATTCAGACCACCATCTCCACCACGCAGAATTACCGAAGTTTGGGGTATTCCCTCTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CCA 90 bp | TGTGTCAATAGGAGAGGGAATACCCCAAACTTCGGTAATTCTGCGTaGTGGAGATGGTGGTCTGAATGGATTCAGCATCCAGAAATAATG | + |
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Preference number: 5 (lower is better) Translates to: CVNRRGNTPNFGNSA*WRWWSEWIQHPEIM Trigger: CATTATTTCTGGATGCTGAATCCATTCAGACCACCATCTCCACCACGCAGAATTACCGAAGTTTGGGGTATTCCCTCTCCTATTGACACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CCA 90 bp | TTTGGATGTCTCAGAATTAGGTGCAAGACTGGGTTTAGGAGTTACTaGTTTTGCTGCTGTAGTCTTGGGAGATGTGGTGACTTTGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: FGCLRIRCKTGFRSY*FCCCSLGRCGDFAV Trigger: CACAGCAAAGTCACCACATCTCCCAAGACTACAGCAGCAAAACCAGTAACTCCTAAACCCAGTCTTGCACCTAATTCTGAGACATCCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS TCA 90 bp | CCGGGAATCAGAGGTTTTTCTCCTTCACCTCCATCTGCATCTTCATaGTCTGGATTTACTTCAGCTGTTTCAGGGTTTGGAGTTTGTTTA | + |
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Preference number: 5 (lower is better) Translates to: PGIRGFSPSPPSASS*SGFTSAVSGFGVCL Trigger: TAAACAAACTCCAAACCCTGAAACAGCTGAAGTAAATCCAGATCATGAAGATGCAGATGGAGGTGAAGGAGAAAAACCTCTGATTCCCGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS TCA 90 bp | TCATCAGAATCTTCTGATGCAGGAGTTGTTTCTTCAGGTTTGTTCTaGATCTCTTCTGCTGGAGCAGTTACTTTGGGTGCAAGAGTTGTT | + |
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Preference number: 5 (lower is better) Translates to: SSESSDAGVVSSGLF*ISSAGAVTLGARVV Trigger: AACAACTCTTGCACCCAAAGTAACTGCTCCAGCAGAAGAGATTCAGAACAAACCTGAAGAAACAACTCCTGCATCAGAAGATTCTGATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS TCA 90 bp | TTAGGATACCCAGGATCTACCACATCATTGGTGAAGCGCCAGTACTaGGAATCCTTAAAGAAGAAAGTTTTTCCTTCACAGTTACATCTA | + |
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Preference number: 5 (lower is better) Translates to: LGYPGSTTSLVKRQY*ESLKKKVFPSQLHL Trigger: TAGATGTAACTGTGAAGGAAAAACTTTCTTCTTTAAGGATTCTCAGTACTGGCGCTTCACCAATGATGTGGTAGATCCTGGGTATCCTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS TCA 90 bp | GTAATCATAGCCATCAGGTTTCCTAATGTTAGGCAGTGTTATCGCTaGAGTAACAACATTTGGAAACCCTCTCCACATTGTACTCACTTT | + |
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Preference number: 5 (lower is better) Translates to: VIIAIRFPNVRQCYR*SNNIWKPSPHCTHF Trigger: AAAGTGAGTACAATGTGGAGAGGGTTTCCAAATGTTGTTACTTCAGCGATAACACTGCCTAACATTAGGAAACCTGATGGCTATGATTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CCA 72 bp | TTTGCTGTGTGGAGTAGTAGGAGGGTCAGGAGGAGGTaGGGTGAGCTTGAACTCACCATTATCCAGCCCGCT | + |
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Preference number: 6 (lower is better) Translates to: FAVWSSRRVRRR*GELELTIIQPA Trigger: AGCGGGCTGGATAATGGTGAGTTCAAGCTCACCCCACCTCCTCCTGACCCTCCTACTACTCCACACAGCAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS CCA 72 bp | TGCTGTAGTCTTGGGAGATGTGGTGACTTTGCTGTGTaGAGTAGTAGGAGGGTCAGGAGGAGGTGGGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: CCSLGRCGDFAV*SSRRVRRRWGE Trigger: CTCACCCCACCTCCTCCTGACCCTCCTACTACTCCACACAGCAAAGTCACCACATCTCCCAAGACTACAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS CAA 72 bp | TCCCTCCCTCGAGCGAAGGACTCGAAGCAGCGTCCTTaGCAGGAGAGCTCTGTAGTGCAGACTCTCTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: SLPRAKDSKQRP*QESSVVQTLLK Trigger: TTTCAAGAGAGTCTGCACTACAGAGCTCTCCTGCAAAGGACGCTGCTTCGAGTCCTTCGCTCGAGGGAGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CCA 72 bp | GCCTTGATTGAGTCTCCCGGCCAAAAGATCAGTGCCTaGAATAGCATTATCCAGCCCGCTTCCAGCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: ALIESPGQKISA*NSIIQPASSFI Trigger: GATGAAGCTGGAAGCGGGCTGGATAATGCTATTCCAGGCACTGATCTTTTGGCCGGGAGACTCAATCAAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006171.16 ENSMUST00000162367.8 |
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| CDS CAA 72 bp | GGTTTTGCTGCTGTAGTCTTGGGAGATGTGGTGACTTaGCTGTGTGGAGTAGTAGGAGGGTCAGGAGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: GFAAVVLGDVVT*LCGVVGGSGGG Trigger: ACCTCCTCCTGACCCTCCTACTACTCCACACAGCAAAGTCACCACATCTCCCAAGACTACAGCAGCAAAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS CCA 72 bp | GTTGATGGCAGGCCGCCTCCCTGTGCACTTCTTCATTaGCTCCTGTTTATAAGTGTACTGCTGAATGTTGCC | + |
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Preference number: 6 (lower is better) Translates to: VDGRPPPCALLH*LLFISVLLNVA Trigger: GGCAACATTCAGCAGTACACTTATAAACAGGAGCCAATGAAGAAGTGCACAGGGAGGCGGCCTGCCATCAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 90 bp | GGTGCAAGACTGGGTTTAGGAGTTACTGGTTTTGCTGCTGTAGTCTaGGGAGATGTGGTGACTTTGCTGTGTGGAGTAGTAGGAGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: GARLGLGVTGFAAVV*GDVVTLLCGVVGGS Trigger: TGACCCTCCTACTACTCCACACAGCAAAGTCACCACATCTCCCAAGACTACAGCAGCAAAACCAGTAACTCCTAAACCCAGTCTTGCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS TCA 72 bp | CTCGAAGCAGCGTCCTTTGCAGGAGAGCTCTTGAGATaGAACCTGTTGAATCAAGACAACAGGAAGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: LEAASFAGELLR*NLLNQDNRKQQ Trigger: CTGCTGCTTCCTGTTGTCTTGATTCAACAGGTTTCATCTCAAGAGCTCTCCTGCAAAGGACGCTGCTTCGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111902.9 ENSMUST00000159035.2 ENSMUST00000161320.8 |
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| CDS CCA 72 bp | AGGAGAGGGAATACCCCAAACTTCGGTAATTCTGCGTaGTGGAGATGGTGGTCTGAATGGATTCAGCATCCA | + |
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Preference number: 6 (lower is better) Translates to: RRGNTPNFGNSA*WRWWSEWIQHP Trigger: TGGATGCTGAATCCATTCAGACCACCATCTCCACCACGCAGAATTACCGAAGTTTGGGGTATTCCCTCTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS TCA 72 bp | AGGACAGTTGTACCAGATTTTGGAGAGGGTCTGCCCTaGACGTGTGGTAATTGCTCTTGCTGTTCTTGTAGG | + |
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Preference number: 6 (lower is better) Translates to: RTVVPDFGEGLP*TCGNCSCCSCR Trigger: CCTACAAGAACAGCAAGAGCAATTACCACACGTTCAGGGCAGACCCTCTCCAAAATCTGGTACAACTGTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS GCA 72 bp | AGGTGCAAGACTGGGTTTAGGAGTTACTGGTTTTGCTaGTGTAGTCTTGGGAGATGTGGTGACTTTGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: RCKTGFRSYWFC*CSLGRCGDFAV Trigger: CACAGCAAAGTCACCACATCTCCCAAGACTACAGCAGCAAAACCAGTAACTCCTAAACCCAGTCTTGCACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS CAA 90 bp | CCACCTCTCTTGAAGAAGTACACAGATTCAGGCCTGTCCTTGTACTaGGCTATTGAAAGAGCAGCCACTATCTTCCCTGTTAGTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: PPLLKKYTDSGLSLY*AIERAATIFPVSPP Trigger: TGGAGGACTAACAGGGAAGATAGTGGCTGCTCTTTCAATAGCCAAGTACAAGGACAGGCCTGAATCTGTGTACTTCTTCAAGAGAGGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CCA 72 bp | CTCAGAATTAGGTGCAAGACTGGGTTTAGGAGTTACTaGTTTTGCTGCTGTAGTCTTGGGAGATGTGGTGAC | + |
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Preference number: 6 (lower is better) Translates to: LRIRCKTGFRSY*FCCCSLGRCGD Trigger: GTCACCACATCTCCCAAGACTACAGCAGCAAAACCAGTAACTCCTAAACCCAGTCTTGCACCTAATTCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS CAA 72 bp | CCGCTTCCAGCTTCATCCACAGCCGGCGGTTCTGGATaGGGTTTCTTTTTAGGAGTGTTTTTCTTGTTATCT | + |
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Preference number: 6 (lower is better) Translates to: PLPASSTAGGSG*GFFLGVFFLLS Trigger: AGATAACAAGAAAAACACTCCTAAAAAGAAACCCAATCCAGAACCGCCGGCTGTGGATGAAGCTGGAAGCGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 7 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 72 bp | AGTACACAGATTCAGGCCTGTCCTTGTACTTGGCTATaGAAAGAGCAGCCACTATCTTCCCTGTTAGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: STQIQACPCTWL*KEQPLSSLLVL Trigger: GAGGACTAACAGGGAAGATAGTGGCTGCTCTTTCAATAGCCAAGTACAAGGACAGGCCTGAATCTGTGTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 72 bp | CTGGGTTTAGGAGTTACTGGTTTTGCTGCTGTAGTCTaGGGAGATGTGGTGACTTTGCTGTGTGGAGTAGTA | + |
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Preference number: 6 (lower is better) Translates to: LGLGVTGFAAVV*GDVVTLLCGVV Trigger: TACTACTCCACACAGCAAAGTCACCACATCTCCCAAGACTACAGCAGCAAAACCAGTAACTCCTAAACCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS CAA 90 bp | TGTAGTGCAGACTCTCTTGAAATCAGGACAGCACTCCATGTAGTGTaGACAGTTATAATCACAGTTGCAGGTGGCATCTCTAGAGTACCC | + |
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Preference number: 6 (lower is better) Translates to: CSADSLEIRTALHVV*TVIITVAGGISRVP Trigger: GGGTACTCTAGAGATGCCACCTGCAACTGTGATTATAACTGTCAACACTACATGGAGTGCTGTCCTGATTTCAAGAGAGTCTGCACTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 90 bp | ATGTTGCCACCTCTCTTGAAGAAGTACACAGATTCAGGCCTGTCCTaGTACTTGGCTATTGAAAGAGCAGCCACTATCTTCCCTGTTAGT | + |
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Preference number: 6 (lower is better) Translates to: MLPPLLKKYTDSGLS*YLAIERAATIFPVS Trigger: ACTAACAGGGAAGATAGTGGCTGCTCTTTCAATAGCCAAGTACAAGGACAGGCCTGAATCTGTGTACTTCTTCAAGAGAGGTGGCAACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS GCA 72 bp | CTTCTTCACAGAAGCTGTCATAATCTGCACAGCACTTaGCATACTGTTTACACTGGGAGTCACAGTCACACT | + |
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Preference number: 6 (lower is better) Translates to: LLHRSCHNLHST*HTVYTGSHSHT Trigger: AGTGTGACTGTGACTCCCAGTGTAAACAGTATGGCAAGTGCTGTGCAGATTATGACAGCTTCTGTGAAGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000159035.2 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS GCA 72 bp | ATTAGGTGCAAGACTGGGTTTAGGAGTTACTGGTTTTaGTGCTGTAGTCTTGGGAGATGTGGTGACTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: IRCKTGFRSYWF*CCSLGRCGDFA Trigger: AGCAAAGTCACCACATCTCCCAAGACTACAGCAGCAAAACCAGTAACTCCTAAACCCAGTCTTGCACCTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS CCA 72 bp | TTCGGTAATTCTGCGTGGTGGAGATGGTGGTCTGAATaGATTCAGCATCCAGAAATAATGACCTCGAAATGC | + |
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Preference number: 6 (lower is better) Translates to: FGNSAWWRWWSE*IQHPEIMTSKC Trigger: GCATTTCGAGGTCATTATTTCTGGATGCTGAATCCATTCAGACCACCATCTCCACCACGCAGAATTACCGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 72 bp | GCAGCCACTATCTTCCCTGTTAGTCCTCCAAAGCCTTaGACAATTTGTTTAGGATACCCAGGATCTACCACA | + |
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Preference number: 6 (lower is better) Translates to: AATIFPVSPPKP*TICLGYPGSTT Trigger: TGTGGTAGATCCTGGGTATCCTAAACAAATTGTCAAAGGCTTTGGAGGACTAACAGGGAAGATAGTGGCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 72 bp | CCTCTCTTGAAGAAGTACACAGATTCAGGCCTGTCCTaGTACTTGGCTATTGAAAGAGCAGCCACTATCTTC | + |
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Preference number: 6 (lower is better) Translates to: PLLKKYTDSGLS*YLAIERAATIF Trigger: GAAGATAGTGGCTGCTCTTTCAATAGCCAAGTACAAGGACAGGCCTGAATCTGTGTACTTCTTCAAGAGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 90 bp | AATGTCCCATTGCGCAGCGTAGTCAGTCCATCCACTGGCTTACCATaGCATAAATTGGTCTCATCTGAAAGCATGGGATTGATGTTAATG | + |
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Preference number: 6 (lower is better) Translates to: NVPLRSVVSPSTGLP*HKLVSSESMGLMLM Trigger: CATTAACATCAATCCCATGCTTTCAGATGAGACCAATTTATGCAATGGTAAGCCAGTGGATGGACTGACTACGCTGCGCAATGGGACATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CCA 72 bp | AATACCCCAAACTTCGGTAATTCTGCGTGGTGGAGATaGTGGTCTGAATGGATTCAGCATCCAGAAATAATG | + |
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Preference number: 6 (lower is better) Translates to: NTPNFGNSAWWR*WSEWIQHPEIM Trigger: CATTATTTCTGGATGCTGAATCCATTCAGACCACCATCTCCACCACGCAGAATTACCGAAGTTTGGGGTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 72 bp | GACTCTCTTGAAATCAGGACAGCACTCCATGTAGTGTaGACAGTTATAATCACAGTTGCAGGTGGCATCTCT | + |
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Preference number: 6 (lower is better) Translates to: DSLEIRTALHVV*TVIITVAGGIS Trigger: AGAGATGCCACCTGCAACTGTGATTATAACTGTCAACACTACATGGAGTGCTGTCCTGATTTCAAGAGAGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 90 bp | ATTGAAAGAGCAGCCACTATCTTCCCTGTTAGTCCTCCAAAGCCTTaGACAATTTGTTTAGGATACCCAGGATCTACCACATCATTGGTG | + |
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Preference number: 6 (lower is better) Translates to: IERAATIFPVSPPKP*TICLGYPGSTTSLV Trigger: CACCAATGATGTGGTAGATCCTGGGTATCCTAAACAAATTGTCAAAGGCTTTGGAGGACTAACAGGGAAGATAGTGGCTGCTCTTTCAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 90 bp | CCACATTGTACTCACTTTGACTTCATTGTGGAGGAAACCTTTGTCTaGATAAGAAACTCTCATGGGCACCGAGTAATGGATCCTGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: PHCTHFDFIVEETFV*IRNSHGHRVMDPEG Trigger: ACCTTCAGGATCCATTACTCGGTGCCCATGAGAGTTTCTTATCAAGACAAAGGTTTCCTCCACAATGAAGTCAAAGTGAGTACAATGTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS TCA 72 bp | CCAGGATCTACCACATCATTGGTGAAGCGCCAGTACTaGGAATCCTTAAAGAAGAAAGTTTTTCCTTCACAG | + |
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Preference number: 6 (lower is better) Translates to: PGSTTSLVKRQY*ESLKKKVFPSQ Trigger: CTGTGAAGGAAAAACTTTCTTCTTTAAGGATTCTCAGTACTGGCGCTTCACCAATGATGTGGTAGATCCTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS TCA 72 bp | GCCATCAGGTTTCCTAATGTTAGGCAGTGTTATCGCTaGAGTAACAACATTTGGAAACCCTCTCCACATTGT | + |
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Preference number: 6 (lower is better) Translates to: AIRFPNVRQCYR*SNNIWKPSPHC Trigger: ACAATGTGGAGAGGGTTTCCAAATGTTGTTACTTCAGCGATAACACTGCCTAACATTAGGAAACCTGATGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS GCA 72 bp | GTTATCTTTTACTTCTTCACAGAAGCTGTCATAATCTaGACAGCACTTGCCATACTGTTTACACTGGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: VIFYFFTEAVII*TALAILFTLGV Trigger: GACTCCCAGTGTAAACAGTATGGCAAGTGCTGTGCAGATTATGACAGCTTCTGTGAAGAAGTAAAAGATAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000161320.8 ENSMUST00000162367.8 |
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| CDS CAA 72 bp | ACTCACTTTGACTTCATTGTGGAGGAAACCTTTGTCTaGATAAGAAACTCTCATGGGCACCGAGTAATGGAT | + |
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Preference number: 6 (lower is better) Translates to: THFDFIVEETFV*IRNSHGHRVMD Trigger: ATCCATTACTCGGTGCCCATGAGAGTTTCTTATCAAGACAAAGGTTTCCTCCACAATGAAGTCAAAGTGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000006171.16 ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161611.8 ENSMUST00000162367.8 ENSMUST00000164600.8 |
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| CDS CAA 90 bp | TTCGTTTCAACTGTTGTCTCTTTATTGGATGCTAAAGATGCCTCTTaGGATGTCTCAGAATTAGGTGCAAGACTGGGTTTAGGAGTTACT | + |
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Preference number: 6 (lower is better) Translates to: FVSTVVSLLDAKDAS*DVSELGARLGLGVT Trigger: AGTAACTCCTAAACCCAGTCTTGCACCTAATTCTGAGACATCCAAAGAGGCATCTTTAGCATCCAATAAAGAGACAACAGTTGAAACGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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| CDS CAA 90 bp | TTATTTGTTGCAGTAGTCTCTTTCGTTTCAACTGTTGTCTCTTTATaGGATGCTAAAGATGCCTCTTTGGATGTCTCAGAATTAGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: LFVAVVSFVSTVVSL*DAKDASLDVSELGA Trigger: TGCACCTAATTCTGAGACATCCAAAGAGGCATCTTTAGCATCCAATAAAGAGACAACAGTTGAAACGAAAGAGACTACTGCAACAAATAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000111901.9 ENSMUST00000111902.9 ENSMUST00000161320.8 ENSMUST00000161611.8 ENSMUST00000164600.8 |
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