Pregenerated sensors for PRG3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027072Ensembl transcript IDs: ENSMUST00000028466.12
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | CCTGACTTTATGACCAGGAGGGACTGGGGACAGAATTaGATGCCAAAGGATGGGGATAAGCAGCCAGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: PDFMTRRDWGQN*MPKDGDKQPGL Trigger: CAGCCCTGGCTGCTTATCCCCATCCTTTGGCATTCAATTCTGTCCCCAGTCCCTCCTGGTCATAAAGTCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS CCA 90 bp | GGTACACAGAGTCACACAGTGTCCTCCCCCACTCCCAGGCTGCCCTaGGGCCCAGTATCCAAAATCCCAGCAGCTCCCATCCATCCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: GTQSHTVSSPTPRLP*GPVSKIPAAPIHPA Trigger: TGCTGGATGGATGGGAGCTGCTGGGATTTTGGATACTGGGCCCCAGGGCAGCCTGGGAGTGGGGGAGGACACTGTGTGACTCTGTGTACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS TCA 90 bp | TGTTGGGAACCCTCAACCTCCTCTCCCTCTGTCTGCTTTGTCTCTTaGGTCAGAGCCAACTCTCTCCCTTGCTCCCTCGAACCATCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: CWEPSTSSPSVCFVS*VRANSLPCSLEPSA Trigger: AGCAGATGGTTCGAGGGAGCAAGGGAGAGAGTTGGCTCTGACTCAAGAGACAAAGCAGACAGAGGGAGAGGAGGTTGAGGGTTCCCAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS GCA 90 bp | AACTATAACTGTGGACGGAAGCAAGGTTGCCTCGGTAGCATCTCCTaGAGACTCTCTGAGCCTTATCAAATGTCTCGGGAGTCCTCACCA | + |
|
Preference number: 5 (lower is better) Translates to: NYNCGRKQGCLGSIS*RLSEPYQMSRESSP Trigger: TGGTGAGGACTCCCGAGACATTTGATAAGGCTCAGAGAGTCTGCAGGAGATGCTACCGAGGCAACCTTGCTTCCGTCCACAGTTATAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS CCA 72 bp | AGTCACACAGTGTCCTCCCCCACTCCCAGGCTGCCCTaGGGCCCAGTATCCAAAATCCCAGCAGCTCCCATC | + |
|
Preference number: 6 (lower is better) Translates to: SHTVSSPTPRLP*GPVSKIPAAPI Trigger: GATGGGAGCTGCTGGGATTTTGGATACTGGGCCCCAGGGCAGCCTGGGAGTGGGGGAGGACACTGTGTGACT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS CAA 72 bp | ACCCTCAACCTCCTCTCCCTCTGTCTGCTTTGTCTCTaGAGTCAGAGCCAACTCTCTCCCTTGCTCCCTCGA | + |
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Preference number: 6 (lower is better) Translates to: TLNLLSLCLLCL*SQSQLSPLLPR Trigger: TCGAGGGAGCAAGGGAGAGAGTTGGCTCTGACTCAAGAGACAAAGCAGACAGAGGGAGAGGAGGTTGAGGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS GCA 72 bp | TGTGGACGGAAGCAAGGTTGCCTCGGTAGCATCTCCTaGAGACTCTCTGAGCCTTATCAAATGTCTCGGGAG | + |
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Preference number: 6 (lower is better) Translates to: CGRKQGCLGSIS*RLSEPYQMSRE Trigger: CTCCCGAGACATTTGATAAGGCTCAGAGAGTCTGCAGGAGATGCTACCGAGGCAACCTTGCTTCCGTCCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS CAA 72 bp | CTGCTTTGTCTCTTGAGTCAGAGCCAACTCTCTCCCTaGCTCCCTCGAACCATCTGCTTCCTGCTTCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: LLCLLSQSQLSP*LPRTICFLLQA Trigger: AGCCTGAAGCAGGAAGCAGATGGTTCGAGGGAGCAAGGGAGAGAGTTGGCTCTGACTCAAGAGACAAAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS CAA 72 bp | GTTGGGAACCCTCAACCTCCTCTCCCTCTGTCTGCTTaGTCTCTTGAGTCAGAGCCAACTCTCTCCCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: VGNPQPPLPLSA*SLESEPTLSLA Trigger: AGCAAGGGAGAGAGTTGGCTCTGACTCAAGAGACAAAGCAGACAGAGGGAGAGGAGGTTGAGGGTTCCCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS CCA 72 bp | TCCATTGCCTCCTCATCCTCAAAAATGTCTTGGTGTTaGGAACCCTCAACCTCCTCTCCCTCTGTCTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: SIASSSSKMSWC*EPSTSSPSVCF Trigger: AAAGCAGACAGAGGGAGAGGAGGTTGAGGGTTCCCAACACCAAGACATTTTTGAGGATGAGGAGGCAATGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS CAA 90 bp | TGGGGCAAGCAGAGTCCTTATTTAAGGCATCTGGATCTGACTCCATaGCCTCCTCATCCTCAAAAATGTCTTGGTGTTGGGAACCCTCAA | + |
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Preference number: 6 (lower is better) Translates to: WGKQSPYLRHLDLTP*PPHPQKCLGVGNPQ Trigger: TTGAGGGTTCCCAACACCAAGACATTTTTGAGGATGAGGAGGCAATGGAGTCAGATCCAGATGCCTTAAATAAGGACTCTGCTTGCCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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| CDS CAA 72 bp | CAGAGTCCTTATTTAAGGCATCTGGATCTGACTCCATaGCCTCCTCATCCTCAAAAATGTCTTGGTGTTGGG | + |
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Preference number: 6 (lower is better) Translates to: QSPYLRHLDLTP*PPHPQKCLGVG Trigger: CCCAACACCAAGACATTTTTGAGGATGAGGAGGCAATGGAGTCAGATCCAGATGCCTTAAATAAGGACTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028466.12 |
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