Pregenerated sensors for PRG2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027073Ensembl transcript IDs: ENSMUST00000028467.6
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GGCAGGAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGCCACCAGGGCAAGGCTaGCCAGCAGCCCAGTATGCA | + |
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Preference number: 4 (lower is better) Translates to: GRKEEAVTQESMNLNSQLPPGQG*PAAQYA Trigger: TGCATACTGGGCTGCTGGGCAGCCTTGCCCTGGTGG...CAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTCCTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR TCA 90 bp | GGCAGGAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGCGCCAGTGGCCTCCTTaGGTACACAGGGTCACACAT | + |
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Preference number: 4 (lower is better) Translates to: GRKEEAVTQESMNLNSQLRQWPP*VHRVTH Trigger: ATGTGTGACCCTGTGTACTCAAGGAGGCCACTGGCG...CAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTCCTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR TCA 90 bp | GAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCGTTTCAGAGCTCAGATaGAGAGCAGACGCTCCCCCG | + |
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Preference number: 4 (lower is better) Translates to: ERRGSYPGKHEFELPAGTVSELR*RADAPP Trigger: CGGGGGAGCGTCTGCTCTTCATCTGAGCTCTGAAAC...GGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR TCA 90 bp | GGCAGGAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGCCTCCAATCCAGACTTaGCCCTGGTTGATTCCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: GRKEEAVTQESMNLNSQLPPIQT*PWLIPL Trigger: CAGGGGAATCAACCAGGGTCAAGTCTGGATTGGAGG...CAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTCCTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR TCA 90 bp | AAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCAATCGGCCCCAGCCCTTaGTCCTGCCTCCAATCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: KEEAVTQESMNLNSQLEPIGPSP*SCLQSR Trigger: TCTGGATTGGAGGCAGGATCAAGGGCTGGGGCCGAT...TGGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR GCA 90 bp | GAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCACAGGGTCACACATCTaGCACCACCAGGGCAAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: ERRGSYPGKHEFELPAGTTGSHI*HHQGKA Trigger: AGCCTTGCCCTGGTGGTGGCAGATGTGTGACCCTGT...GGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR TCA 90 bp | GAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCGCAGCGCCGGCAAACTaGCTGAGCTTTGTCAAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: ERRGSYPGKHEFELPAGTAAPAN*LSFVKA Trigger: TGCTTTGACAAAGCTCAGTCAGTTTGCCGGCGCTGC...GGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR CCA 90 bp | GGCAGGAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGTTGTGTCCTCTTCCTTaGGGCACTGAAGGTCCACGT | + |
|
Preference number: 4 (lower is better) Translates to: GRKEEAVTQESMNLNSQLLCPLP*GTEGPR Trigger: ACGTGGACCTTCAGTGCCCCAAGGAAGAGGACACAA...CAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTCCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR CCA 90 bp | GAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCCCCCTGACAGCGGACTaGATTCCGAAGTTAACACTG | + |
|
Preference number: 4 (lower is better) Translates to: ERRGSYPGKHEFELPAGTPLTAD*IPKLTL Trigger: CAGTGTTAACTTCGGAATCCAGTCCGCTGTCAGGGG...GGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTC 50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR TCA 90 bp | AAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCAACGTCTGTCACATCCTaGCCTGAGACAGCTCCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: KEEAVTQESMNLNSQLEPTSVTS*PETAPS Trigger: TGAAGGAGCTGTCTCAGGTCAGGATGTGACAGACGT...TGGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR TCA 90 bp | AAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCATTCTCCTTCTGGTCCTaGTATCTCTGCATCCCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: KEEAVTQESMNLNSQLEPFSFWS*YLCIPR Trigger: CCTAGGGATGCAGAGATATCAGGACCAGAAGGAGAA...TGGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR GCA 90 bp | GAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCCCCAGCAGCCCAGTATaGAAAATTCCAAGAACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: ERRGSYPGKHEFELPAGTPSSPV*KIPRTS Trigger: GGAAGTTCTTGGAATTTTGCATACTGGGCTGCTGGG...GGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR CCA 90 bp | AAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCACCATCAATGGGCTTTTaGAGTCAGAAGTTTCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: KEEAVTQESMNLNSQLEPPSMGF*SQKFQS Trigger: GCTCTGAAACTTCTGACTCCAAAAGCCCATTGATGG...TGGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR CCA 90 bp | GAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCGTTCTCATCCATCAATaGGCTTTTGGAGTCAGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: ERRGSYPGKHEFELPAGTVLIHQ*AFGVRS Trigger: ACTTCTGACTCCAAAAGCCCATTGATGGATGAGAAC...GGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR CAA 90 bp | GGCAGGAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGCATCGGCCCCAGCCCTaGATCCTGCCTCCAATCCAG | + |
|
Preference number: 5 (lower is better) Translates to: GRKEEAVTQESMNLNSQLHRPQP*ILPPIQ Trigger: CTGGATTGGAGGCAGGATCAAGGGCTGGGGCCGATG...CAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTCCTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR CAA 90 bp | GAAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCACGCCAGTGGCCTCCTaGAGTACACAGGGTCACACA | + |
|
Preference number: 5 (lower is better) Translates to: ERRGSYPGKHEFELPAGTTPVAS*STQGHT Trigger: TGTGTGACCCTGTGTACTCAAGGAGGCCACTGGCGT...GGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR CAA 90 bp | AAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCAGCCTCCAATCCAGACTaGACCCTGGTTGATTCCCCT | + |
|
Preference number: 5 (lower is better) Translates to: KEEAVTQESMNLNSQLEPASNPD*TLVDSP Trigger: AGGGGAATCAACCAGGGTCAAGTCTGGATTGGAGGC...TGGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS-3UTR CAA 90 bp | AAAGAAGAGGCAGTTACCCAGGAAAGCATGAATTTGAACTCCCAGCTGGAACCATCCATCAATGGGCTTTaGGAGTCAGAAGTTTCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: KEEAVTQESMNLNSQLEPSINGL*ESEVSE Trigger: CTCTGAAACTTCTGACTCCAAAAGCCCATTGATGGA...TGGTTCCAGCTGGGAGTTCAAATTCATGCTTTCCTGGGTAACTGCCTCTTCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS GCA 72 bp | GCCAGTGGCCTCCTTGAGTACACAGGGTCACACATCTaGCACCACCAGGGCAAGGCTGCCCAGCAGCCCAGT | + |
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Preference number: 6 (lower is better) Translates to: ASGLLEYTGSHI*HHQGKAAQQPS Trigger: ACTGGGCTGCTGGGCAGCCTTGCCCTGGTGGTGGCAGATGTGTGACCCTGTGTACTCAAGGAGGCCACTGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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| CDS CAA 72 bp | AAATTCCAAGAACTTCCATCAACCCATCGAAAGCGTTaGCATCGGCCCCAGCCCTTGATCCTGCCTCCAATC | + |
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Preference number: 6 (lower is better) Translates to: KFQELPSTHRKR*HRPQPLILPPI Trigger: GATTGGAGGCAGGATCAAGGGCTGGGGCCGATGCAAACGCTTTCGATGGGTTGATGGAAGTTCTTGGAATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028467.6 |
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