Pregenerated sensors for PRELID3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016257Ensembl transcript IDs: ENSMUST00000016401.15, ENSMUST00000117442.8, ENSMUST00000120822.2
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGTCCCTCATGCAGGCAGTTCTGGTTCACAGCAGCGGGCAGCTGTaGACAGGAGGGCGGCTGGGCTCTGCTCTGGTTGGTCCGCAGCCA | + |
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Preference number: 1 (lower is better) Translates to: ESLMQAVLVHSSGQL*TGGRLGSALVGPQP Trigger: TGGCTGCGGACCAACCAGAGCAGAGCCCAGCCGCCCTCCTGTCCACAGCTGCCCGCTGCTGTGAACCAGAACTGCCTGCATGAGGGACTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016401.15 |
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| 3UTR CCA 90 bp | CAGTTCTGGTTCACAGCAGCGGGCAGCTGTGGACAGGAGGGCGGCTaGGCTCTGCTCTGGTTGGTCCGCAGCCAGGTAGTGTTCCAGTAC | + |
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Preference number: 1 (lower is better) Translates to: QFWFTAAGSCGQEGG*ALLWLVRSQVVFQY Trigger: GTACTGGAACACTACCTGGCTGCGGACCAACCAGAGCAGAGCCCAGCCGCCCTCCTGTCCACAGCTGCCCGCTGCTGTGAACCAGAACTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016401.15 |
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| 3UTR CCA 72 bp | ATGCAGGCAGTTCTGGTTCACAGCAGCGGGCAGCTGTaGACAGGAGGGCGGCTGGGCTCTGCTCTGGTTGGT | + |
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Preference number: 3 (lower is better) Translates to: MQAVLVHSSGQL*TGGRLGSALVG Trigger: ACCAACCAGAGCAGAGCCCAGCCGCCCTCCTGTCCACAGCTGCCCGCTGCTGTGAACCAGAACTGCCTGCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016401.15 |
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| 3UTR-3UTR CAA 90 bp | ACTGTTCACATGAACACAGCCTCTCCCAGTCTTACATCCTCCCCTCAGATGATCGAGGTTCTGGATCTTTaGTTTAGATCAAAAGTCACA | + |
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Preference number: 3 (lower is better) Translates to: TVHMNTASPSLTSSPQMIEVLDL*FRSKVT Trigger: TGTGACTTTTGATCTAAACAAAAGATCCAGAACCTC...GATCATCTGAGGGGAGGATGTAAGACTGGGAGAGGCTGTGTTCATGTGAACAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016401.15 ENSMUST00000117442.8 |
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| 3UTR-3UTR CAA 90 bp | TCATTTAAAAGTACCAAATCCAAACACTGGTTTCCAGCAGGGCAGGTTATTTTAGAGGTTCTGGATCTTTaGTTTAGATCAAAAGTCACA | + |
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Preference number: 3 (lower is better) Translates to: SFKSTKSKHWFPAGQVILEVLDL*FRSKVT Trigger: TGTGACTTTTGATCTAAACAAAAGATCCAGAACCTC...TAAAATAACCTGCCCTGCTGGAAACCAGTGTTTGGATTTGGTACTTTTAAATGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000016401.15 |
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| CDS-3UTR GCA 90 bp | TGGACAGGAGGGCGGCTGGGCTCTGCTCTGGTTGGTCCGCAGCCAGGTAGTGTTTCATTTGTCCACCAGTaGTGCCGCTGCCGCCATTGG | + |
|
Preference number: 4 (lower is better) Translates to: WTGGRLGSALVGPQPGSVSFVHQ*CRCRHW Trigger: CCAATGGCGGCAGCGGCAGCACTGGTGGACAAATGA...AACACTACCTGGCTGCGGACCAACCAGAGCAGAGCCCAGCCGCCCTCCTGTCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016401.15 |
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| CDS-3UTR GCA 90 bp | GTTCACATGAACACAGCCTCTCCCAGTCTTACATCCTCCCCTCAGATGATCCCTGGAAGATATGGTGCTTaGCATGAGTCCTTCCAGGTA | + |
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Preference number: 4 (lower is better) Translates to: VHMNTASPSLTSSPQMIPGRYGA*HESFQV Trigger: TACCTGGAAGGACTCATGGCAAGCACCATATCTTCC...AGGGATCATCTGAGGGGAGGATGTAAGACTGGGAGAGGCTGTGTTCATGTGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016401.15 ENSMUST00000117442.8 |
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| CDS-3UTR TCA 90 bp | CATGAACACAGCCTCTCCCAGTCTTACATCCTCCCCTCAGATGATCCCTCTGATGACCATATTTGTAAATaGGATGTTGGTGGACTTGAG | + |
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Preference number: 4 (lower is better) Translates to: HEHSLSQSYILPSDDPSDDHICK*DVGGLE Trigger: CTCAAGTCCACCAACATCTCATTTACAAATATGGTC...ATCAGAGGGATCATCTGAGGGGAGGATGTAAGACTGGGAGAGGCTGTGTTCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016401.15 ENSMUST00000117442.8 |
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| CDS-3UTR GCA 90 bp | GGAGCTTTAAGAGACTCCAGATCAACACCAATTTCTTCTAAGTACTTAAACAACGGAAGATATGGTGCTTaGCATGAGTCCTTCCAGGTA | + |
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Preference number: 4 (lower is better) Translates to: GALRDSRSTPISSKYLNNGRYGA*HESFQV Trigger: TACCTGGAAGGACTCATGGCAAGCACCATATCTTCC...GTTGTTTAAGTACTTAGAAGAAATTGGTGTTGATCTGGAGTCTCTTAAAGCTCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016401.15 |
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| CDS-3UTR GCA 90 bp | CATTTAAAAGTACCAAATCCAAACACTGGTTTCCAGCAGGGCAGGTTATTTTATGGGTTTGGATATTTCTaGATTGCAGCCGTAGTGACT | + |
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Preference number: 4 (lower is better) Translates to: HLKVPNPNTGFQQGRLFYGFGYF*IAAVVT Trigger: AGTCACTACGGCTGCAATGCAGAAATATCCAAACCC...ATAAAATAACCTGCCCTGCTGGAAACCAGTGTTTGGATTTGGTACTTTTAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016401.15 |
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| CDS-3UTR GCA 90 bp | TATCATTTAAAAGTACCAAATCCAAACACTGGTTTCCAGCAGGGCAGGTTATTTACTACAGAATGCTCCTaGACGTACGTTTTCGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: YHLKVPNPNTGFQQGRLFTTECS*TYVFVL Trigger: AAGAACGAAAACGTACGTGCAGGAGCATTCTGTAGT...AAATAACCTGCCCTGCTGGAAACCAGTGTTTGGATTTGGTACTTTTAAATGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016401.15 |
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| CDS-3UTR CAA 90 bp | TGGACAGGAGGGCGGCTGGGCTCTGCTCTGGTTGGTCCGCAGCCAGGTAGTGTTTTTGTAAATGAGATGTaGGTGGACTTGAGCTCCATT | + |
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Preference number: 5 (lower is better) Translates to: WTGGRLGSALVGPQPGSVFVNEM*VDLSSI Trigger: AATGGAGCTCAAGTCCACCAACATCTCATTTACAAA...AACACTACCTGGCTGCGGACCAACCAGAGCAGAGCCCAGCCGCCCTCCTGTCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016401.15 |
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| CDS-3UTR CAA 90 bp | CATGAACACAGCCTCTCCCAGTCTTACATCCTCCCCTCAGATGATCCCTCTGATATTGCTTCTCGGCCTTaGCTAGCATTGGAAGATATG | + |
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Preference number: 5 (lower is better) Translates to: HEHSLSQSYILPSDDPSDIASRP*LALEDM Trigger: CATATCTTCCAATGCTAGCAAAGGCCGAGAAGCAAT...ATCAGAGGGATCATCTGAGGGGAGGATGTAAGACTGGGAGAGGCTGTGTTCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016401.15 ENSMUST00000117442.8 |
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| CDS-3UTR CAA 90 bp | CTCTCCCAGTCTTACATCCTCCCCTCAGATGATCCCTCTGATTTAGAGGTTCTGATTGCTTCTCGGCCTTaGCTAGCATTGGAAGATATG | + |
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Preference number: 5 (lower is better) Translates to: LSQSYILPSDDPSDLEVLIASRP*LALEDM Trigger: CATATCTTCCAATGCTAGCAAAGGCCGAGAAGCAAT...CAGAACCTCTAAATCAGAGGGATCATCTGAGGGGAGGATGTAAGACTGGGAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016401.15 ENSMUST00000117442.8 |
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| CDS GCA 72 bp | AATCTCAGCGTTCAGTTTATGTATCACCCACTCCATTaGTTCTCGGCCTTTGCTAGCATTGGAAGATATGGT | + |
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Preference number: 6 (lower is better) Translates to: NLSVQFMYHPLH*FSAFASIGRYG Trigger: ACCATATCTTCCAATGCTAGCAAAGGCCGAGAAGCAATGGAGTGGGTGATACATAAACTGAACGCTGAGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016401.15 ENSMUST00000117442.8 ENSMUST00000120822.2 |
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