Pregenerated sensors for PRELID3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024530Ensembl transcript IDs: ENSMUST00000025411.9, ENSMUST00000235414.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTTCAAGGGCATCTTCAGTCACACACAGAGTTCAAGGCCGGTCTTaGGTATGGACATCCCAGTTGCTGCTGGAATCCATAGTGGCCTGT | + |
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Preference number: 1 (lower is better) Translates to: SSRASSVTHRVQGRS*VWTSQLLLESIVAC Trigger: ACAGGCCACTATGGATTCCAGCAGCAACTGGGATGTCCATACTCAAGACCGGCCTTGAACTCTGTGTGTGACTGAAGATGCCCTTGAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| 3UTR-3UTR TCA 90 bp | TGCAGAGAGCTCCCAAACTGTCTCTGGATGCAGGGCATGATGGGGACCCTGAGGGCTGGCGCCTGGGCCTaGTGCTGCACTGGGAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: CRELPNCLWMQGMMGTLRAGAWA*CCTGRK Trigger: TTTCCTCCCAGTGCAGCATCAGGCCCAGGCGCCAGC...CCTCAGGGTCCCCATCATGCCCTGCATCCAGAGACAGTTTGGGAGCTCTCTGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| 3UTR-3UTR CCA 90 bp | GGCAGTGCAGCCCAGTACTGCCCAGCACAGTGCCCACAGCACCTACAGCAGAGCGGCCTGATGCTGCACTaGGAGGAAAGATTCCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: GSAAQYCPAQCPQHLQQSGLMLH*EERFQQ Trigger: CTGCTGGAATCTTTCCTCCCAGTGCAGCATCAGGCC...GCTCTGCTGTAGGTGCTGTGGGCACTGTGCTGGGCAGTACTGGGCTGCACTGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| 3UTR CAA 90 bp | CCAAAAAGAGTCAAGTATAGCAGTCCAAGTCTGTATTCTCAGGACTaGGGAATGGGGAAGCAGAAGGAAGAGTTCAAGGGCATCTTCAGT | + |
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Preference number: 2 (lower is better) Translates to: PKRVKYSSPSLYSQD*GMGKQKEEFKGIFS Trigger: ACTGAAGATGCCCTTGAACTCTTCCTTCTGCTTCCCCATTCCCAAGTCCTGAGAATACAGACTTGGACTGCTATACTTGACTCTTTTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| 3UTR GCA 72 bp | CACAGGGGCAGTGCAGCCCAGTACTGCCCAGCACAGTaGCCACAGCACCTACAGCAGAGCCCAGCAGACCAG | + |
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Preference number: 3 (lower is better) Translates to: HRGSAAQYCPAQ*PQHLQQSPADQ Trigger: CTGGTCTGCTGGGCTCTGCTGTAGGTGCTGTGGGCACTGTGCTGGGCAGTACTGGGCTGCACTGCCCCTGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| 3UTR-3UTR CAA 90 bp | TGCAGAGAGCTCCCAAACTGTCTCTGGATGCAGGGCATGATGGGGACCCTGAGGACACCTCTTCCAGACTaGGCGGGAGCCCCAGCCACA | + |
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Preference number: 3 (lower is better) Translates to: CRELPNCLWMQGMMGTLRTPLPD*AGAPAT Trigger: TGTGGCTGGGGCTCCCGCCAAGTCTGGAAGAGGTGT...CCTCAGGGTCCCCATCATGCCCTGCATCCAGAGACAGTTTGGGAGCTCTCTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| 3UTR CCA 72 bp | GCCTCACAGAGCTGGCGCCTGGGCCTGATGCTGCACTaGGAGGAAAGATTCCAGCAGACACCTCTTCCAGAC | + |
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Preference number: 3 (lower is better) Translates to: ASQSWRLGLMLH*EERFQQTPLPD Trigger: GTCTGGAAGAGGTGTCTGCTGGAATCTTTCCTCCCAGTGCAGCATCAGGCCCAGGCGCCAGCTCTGTGAGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| 3UTR CCA 72 bp | GGGAGGAAAGATTCCAGCAGACACCTCTTCCAGACTTaGCGGGAGCCCCAGCCACACTTGCCTCTCGTCTTC | + |
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Preference number: 3 (lower is better) Translates to: GRKDSSRHLFQT*REPQPHLPLVF Trigger: GAAGACGAGAGGCAAGTGTGGCTGGGGCTCCCGCCAAGTCTGGAAGAGGTGTCTGCTGGAATCTTTCCTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| 3UTR CCA 72 bp | CATAGTGGCCTGTGCAGAGAGCTCCCAAACTGTCTCTaGATGCAGGGCATGATGGGGACCCTGAGGGCCAGA | + |
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Preference number: 3 (lower is better) Translates to: HSGLCRELPNCL*MQGMMGTLRAR Trigger: TCTGGCCCTCAGGGTCCCCATCATGCCCTGCATCCAGAGACAGTTTGGGAGCTCTCTGCACAGGCCACTATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| 3UTR GCA 72 bp | GACATCCCAGTTGCTGCTGGAATCCATAGTGGCCTGTaGAGAGAGCTCCCAAACTGTCTCTGGATGCAGGGC | + |
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Preference number: 3 (lower is better) Translates to: DIPVAAGIHSGL*RELPNCLWMQG Trigger: GCCCTGCATCCAGAGACAGTTTGGGAGCTCTCTGCACAGGCCACTATGGATTCCAGCAGCAACTGGGATGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR TCA 90 bp | AACCAACACAGGGGCAGTGCAGCCCAGTACTGCCCAGCACAGTGCCCACAGCACGCTGGCGCCTGGGCCTaGTGCTGCACTGGGAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: NQHRGSAAQYCPAQCPQHAGAWA*CCTGRK Trigger: TTTCCTCCCAGTGCAGCATCAGGCCCAGGCGCCAGC...GTGCTGTGGGCACTGTGCTGGGCAGTACTGGGCTGCACTGCCCCTGTGTTGGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235414.2 |
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| CDS-3UTR TCA 90 bp | ACCAACACAGGGGCAGTGCAGCCCAGTACTGCCCAGCACAGTGCCCACAGCACCACCAGGGCCCTGTCCTaGGGCGTTCACCTTCTTAGC | + |
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Preference number: 4 (lower is better) Translates to: TNTGAVQPSTAQHSAHSTTRALS*GVHLLS Trigger: GCTAAGAAGGTGAACGCCTCAGGACAGGGCCCTGGT...GGTGCTGTGGGCACTGTGCTGGGCAGTACTGGGCTGCACTGCCCCTGTGTTGGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235414.2 |
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| CDS-3UTR CCA 90 bp | CCAGTACTGCCCAGCACAGTGCCCACAGCACCTACAGCAGAGCCCAGCAGACCAACAGCCTCACAGAGCTaGCGCCTGGGCCTGATGCTG | + |
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Preference number: 4 (lower is better) Translates to: PVLPSTVPTAPTAEPSRPTASQS*RLGLML Trigger: CAGCATCAGGCCCAGGCGCCAGCTCTGTGAGGCTGT...TGGTCTGCTGGGCTCTGCTGTAGGTGCTGTGGGCACTGTGCTGGGCAGTACTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235414.2 |
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| CDS-3UTR TCA 90 bp | CCAGGGCTCCACACCACTCCCAAGAAACGGCCTCACACAAACAGCCTCACAGAGTCCGCATGGCCGCCTTaGTCACCGTGTCCCAGGGAT | + |
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Preference number: 4 (lower is better) Translates to: PGLHTTPKKRPHTNSLTESAWPP*SPCPRD Trigger: ATCCCTGGGACACGGTGATCAAGGCGGCCATGCGGA...CTCTGTGAGGCTGTTTGTGTGAGGCCGTTTCTTGGGAGTGGTGTGGAGCCCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR TCA 90 bp | GGCAGTGCAGCCCAGTACTGCCCAGCACAGTGCCCACAGCACCTACAGCAGAGCCGACGGAGCGCTCTTTaGTGTACGTCAAGGTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: GSAAQYCPAQCPQHLQQSRRSAL*CTSRSC Trigger: ACAGGACCTTGACGTACATCAAAGAGCGCTCCGTCG...GCTCTGCTGTAGGTGCTGTGGGCACTGTGCTGGGCAGTACTGGGCTGCACTGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS-3UTR GCA 90 bp | CCACAGCACCTACAGCAGAGCCCAGCAGACCAGGGCTCCACACCACTCCCAAGAGGATGGCCGAACACGTaGTCCGAGCTCCAGATCTTC | + |
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Preference number: 4 (lower is better) Translates to: PQHLQQSPADQGSTPLPRGWPNT*SELQIF Trigger: GAAGATCTGGAGCTCGGAGCACGTGTTCGGCCATCC...TCTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCTGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR TCA 90 bp | CCAGTACTGCCCAGCACAGTGCCCACAGCACCTACAGCAGAGCCCAGCAGACCACGACGGAGCGCTCTTTaGTGTACGTCAAGGTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: PVLPSTVPTAPTAEPSRPRRSAL*CTSRSC Trigger: ACAGGACCTTGACGTACATCAAAGAGCGCTCCGTCG...TGGTCTGCTGGGCTCTGCTGTAGGTGCTGTGGGCACTGTGCTGGGCAGTACTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS-3UTR CCA 90 bp | GGCAGTGCAGCCCAGTACTGCCCAGCACAGTGCCCACAGCACCTACAGCAGAGCACGTCAAGGTCCTGTTaGCTCCCAAAATCGCTCGCA | + |
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Preference number: 4 (lower is better) Translates to: GSAAQYCPAQCPQHLQQSTSRSC*LPKSLA Trigger: TGCGAGCGATTTTGGGAGCCAACAGGACCTTGACGT...GCTCTGCTGTAGGTGCTGTGGGCACTGTGCTGGGCAGTACTGGGCTGCACTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS-3UTR TCA 90 bp | CCACAGCACCTACAGCAGAGCCCAGCAGACCAGGGCTCCACACCACTCCCAAGATCAGGGTTCTCTGGATaGGGTGTGTACACCAACCTC | + |
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Preference number: 4 (lower is better) Translates to: PQHLQQSPADQGSTPLPRSGFSG*GVYTNL Trigger: GAGGTTGGTGTACACACCTCATCCAGAGAACCCTGA...TCTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCTGTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS-3UTR CCA 90 bp | ACCAACACAGGGGCAGTGCAGCCCAGTACTGCCCAGCACAGTGCCCACAGCACCTGGAGGATATCGTGGTaGCCATCAGACTTTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: TNTGAVQPSTAQHSAHSTWRISW*PSDFPG Trigger: ACCTGGAAAGTCTGATGGCCACCACGATATCCTCCA...GGTGCTGTGGGCACTGTGCTGGGCAGTACTGGGCTGCACTGCCCCTGTGTTGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS-3UTR CCA 90 bp | AGCACCTACAGCAGAGCCCAGCAGACCAGGGCTCCACACCACTCCCAAGAAACGGGCCTGATGCTGCACTaGGAGGAAAGATTCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: STYSRAQQTRAPHHSQETGLMLH*EERFQQ Trigger: CTGCTGGAATCTTTCCTCCCAGTGCAGCATCAGGCC...CGTTTCTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235414.2 |
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| CDS-3UTR TCA 90 bp | CCAGTACTGCCCAGCACAGTGCCCACAGCACCTACAGCAGAGCCCAGCAGACCACAACCTCTCATTCACTaGCACCAGATTCGTGAGCGT | + |
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Preference number: 4 (lower is better) Translates to: PVLPSTVPTAPTAEPSRPQPLIH*HQIRER Trigger: ACGCTCACGAATCTGGTGTCAGTGAATGAGAGGTTG...TGGTCTGCTGGGCTCTGCTGTAGGTGCTGTGGGCACTGTGCTGGGCAGTACTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| 3UTR CAA 72 bp | TGGGAGGAAAGATTCCAGCAGACACCTCTTCCAGACTaGGCGGGAGCCCCAGCCACACTTGCCTCTCGTCTT | + |
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Preference number: 4 (lower is better) Translates to: WEERFQQTPLPD*AGAPATLASRL Trigger: AAGACGAGAGGCAAGTGTGGCTGGGGCTCCCGCCAAGTCTGGAAGAGGTGTCTGCTGGAATCTTTCCTCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR GCA 90 bp | CACAGCACCTACAGCAGAGCCCAGCAGACCAGGGCTCCACACCACTCCCAAGAAAGCCCCAGCCACACTTaGCTCTCGTCTTCTTTATTC | + |
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Preference number: 4 (lower is better) Translates to: HSTYSRAQQTRAPHHSQESPSHT*LSSSLF Trigger: GAATAAAGAAGACGAGAGGCAAGTGTGGCTGGGGCT...TTCTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235414.2 |
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| CDS-3UTR TCA 90 bp | TGGGACACTATAAGGACATGGGACTACCAGGAACAGAGGACAGCAGCCAGGCCCTCAGGGTTCTCTGGATaGGGTGTGTACACCAACCTC | + |
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Preference number: 4 (lower is better) Translates to: WDTIRTWDYQEQRTAARPSGFSG*GVYTNL Trigger: GAGGTTGGTGTACACACCTCATCCAGAGAACCCTGA...GGGCCTGGCTGCTGTCCTCTGTTCCTGGTAGTCCCATGTCCTTATAGTGTCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR TCA 90 bp | AACCAACACAGGGGCAGTGCAGCCCAGTACTGCCCAGCACAGTGCCCACAGCACGTGATGATGGCTTCTTaGGTGAGCACAGTCTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: NQHRGSAAQYCPAQCPQHVMMAS*VSTVFS Trigger: TGAAAAGACTGTGCTCACTCAAGAAGCCATCATCAC...GTGCTGTGGGCACTGTGCTGGGCAGTACTGGGCTGCACTGCCCCTGTGTTGGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS-3UTR TCA 90 bp | CCACAGCACCTACAGCAGAGCCCAGCAGACCAGGGCTCCACACCACTCCCAAGAGTGATGATGGCTTCTTaGGTGAGCACAGTCTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: PQHLQQSPADQGSTPLPRVMMAS*VSTVFS Trigger: TGAAAAGACTGTGCTCACTCAAGAAGCCATCATCAC...TCTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| 3UTR CAA 72 bp | CACCTCTTCCAGACTTGGCGGGAGCCCCAGCCACACTaGCCTCTCGTCTTCTTTATTCGTCCACACTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: HLFQTWREPQPH*PLVFFIRPHFL Trigger: AAGGAAGTGTGGACGAATAAAGAAGACGAGAGGCAAGTGTGGCTGGGGCTCCCGCCAAGTCTGGAAGAGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR TCA 90 bp | AGCACCTACAGCAGAGCCCAGCAGACCAGGGCTCCACACCACTCCCAAGAAACGTTTGACTCTTTTTGGTaGGACATCTCTTCGGGCACA | + |
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Preference number: 4 (lower is better) Translates to: STYSRAQQTRAPHHSQETFDSFW*DISSGT Trigger: TGTGCCCGAAGAGATGTCTCACCAAAAAGAGTCAAA...CGTTTCTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000235414.2 |
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| CDS-3UTR CCA 90 bp | TTGGCGGGAGCCCCAGCCACACTTGCCTCTCGTCTTCTTTATTCGTCCACACTTACGTCAAGGTCCTGTTaGCTCCCAAAATCGCTCGCA | + |
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Preference number: 4 (lower is better) Translates to: LAGAPATLASRLLYSSTLTSRSC*LPKSLA Trigger: TGCGAGCGATTTTGGGAGCCAACAGGACCTTGACGT...AAGTGTGGACGAATAAAGAAGACGAGAGGCAAGTGTGGCTGGGGCTCCCGCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR CCA 90 bp | GACTTGGCGGGAGCCCCAGCCACACTTGCCTCTCGTCTTCTTTATTCGTCCACACATTGGAGGATATCGTaGTGGCCATCAGACTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: DLAGAPATLASRLLYSSTHWRIS*WPSDFP Trigger: TGGAAAGTCTGATGGCCACCACGATATCCTCCAATG...TGTGGACGAATAAAGAAGACGAGAGGCAAGTGTGGCTGGGGCTCCCGCCAAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR TCA 90 bp | GGGCATCTTCAGTCACACACAGAGTTCAAGGCCGGTCTTGAGTATGGACATCCCCAACCTCTCATTCACTaGCACCAGATTCGTGAGCGT | + |
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Preference number: 4 (lower is better) Translates to: GHLQSHTEFKAGLEYGHPQPLIH*HQIRER Trigger: ACGCTCACGAATCTGGTGTCAGTGAATGAGAGGTTG...GGGATGTCCATACTCAAGACCGGCCTTGAACTCTGTGTGTGACTGAAGATGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR CCA 90 bp | GGGCATCTTCAGTCACACACAGAGTTCAAGGCCGGTCTTGAGTATGGACATCCCTGGAGGATATCGTGGTaGCCATCAGACTTTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: GHLQSHTEFKAGLEYGHPWRISW*PSDFPG Trigger: ACCTGGAAAGTCTGATGGCCACCACGATATCCTCCA...GGGATGTCCATACTCAAGACCGGCCTTGAACTCTGTGTGTGACTGAAGATGCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| 3UTR CAA 72 bp | GGCATCTTCAGTCACACACAGAGTTCAAGGCCGGTCTaGAGTATGGACATCCCAGTTGCTGCTGGAATCCAT | + |
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Preference number: 4 (lower is better) Translates to: GIFSHTQSSRPV*SMDIPVAAGIH Trigger: ATGGATTCCAGCAGCAACTGGGATGTCCATACTCAAGACCGGCCTTGAACTCTGTGTGTGACTGAAGATGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS GCA 90 bp | ACGAGGCCAGGCAGCCCCCATTCGGTACTGAGCAGGCGCAGACTGTaGAGGCGCCCACAGCCATCCACGCTGCGCTCCAGCACATCCACG | + |
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Preference number: 5 (lower is better) Translates to: TRPGSPHSVLSRRRL*RRPQPSTLRSSTST Trigger: CGTGGATGTGCTGGAGCGCAGCGTGGATGGCTGTGGGCGCCTGCACAGTCTGCGCCTGCTCAGTACCGAATGGGGGCTGCCTGGCCTCGT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS TCA 90 bp | CTCCCAAAATCGCTCGCACGAGGCCAGGCAGCCCCCATTCGGTACTaGGCAGGCGCAGACTGTGCAGGCGCCCACAGCCATCCACGCTGC | + |
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Preference number: 5 (lower is better) Translates to: LPKSLARGQAAPIRY*AGADCAGAHSHPRC Trigger: GCAGCGTGGATGGCTGTGGGCGCCTGCACAGTCTGCGCCTGCTCAGTACCGAATGGGGGCTGCCTGGCCTCGTGCGAGCGATTTTGGGAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS-3UTR CAA 90 bp | CACAGCACCTACAGCAGAGCCCAGCAGACCAGGGCTCCACACCACTCCCAAGAAACACCTCTTCCAGACTaGGCGGGAGCCCCAGCCACA | + |
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Preference number: 5 (lower is better) Translates to: HSTYSRAQQTRAPHHSQETPLPD*AGAPAT Trigger: TGTGGCTGGGGCTCCCGCCAAGTCTGGAAGAGGTGT...TTCTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCTGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235414.2 |
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| CDS-3UTR CAA 90 bp | AGCTTAAAACCAACACAGGGGCAGTGCAGCCCAGTACTGCCCAGCACAGTGCCCTTCCGCATGGCCGCCTaGATCACCGTGTCCCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: SLKPTQGQCSPVLPSTVPFRMAA*ITVSQG Trigger: TCCCTGGGACACGGTGATCAAGGCGGCCATGCGGAA...GGGCACTGTGCTGGGCAGTACTGGGCTGCACTGCCCCTGTGTTGGTTTTAAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR CAA 90 bp | CCCACAGCACCTACAGCAGAGCCCAGCAGACCAGGGCTCCACACCACTCCCAAGCACCCCTTCTTAGCATaGGAGGATATCGTGGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: PTAPTAEPSRPGLHTTPKHPFLA*EDIVVA Trigger: GGCCACCACGATATCCTCCAATGCTAAGAAGGGGTG...CTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCTGTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025411.9 |
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| CDS-3UTR CAA 90 bp | CCAGTACTGCCCAGCACAGTGCCCACAGCACCTACAGCAGAGCCCAGCAGACCATTCACCTTCTTAGCATaGGAGGATATCGTGGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: PVLPSTVPTAPTAEPSRPFTFLA*EDIVVA Trigger: GGCCACCACGATATCCTCCAATGCTAAGAAGGTGAA...TGGTCTGCTGGGCTCTGCTGTAGGTGCTGTGGGCACTGTGCTGGGCAGTACTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235414.2 |
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| CDS TCA 90 bp | CATCTCTTCGGGCACATTACCACAGACTGCACCAGGGCCCTGTCCTaGGGCGTTCACCTTCTTAGCATTGGAGGATATCGTGGTGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: HLFGHITTDCTRALS*GVHLLSIGGYRGGH Trigger: ATGGCCACCACGATATCCTCCAATGCTAAGAAGGTGAACGCCTCAGGACAGGGCCCTGGTGCAGTCTGTGGTAATGTGCCCGAAGAGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235414.2 |
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| CDS-3UTR CAA 90 bp | CACAGCACCTACAGCAGAGCCCAGCAGACCAGGGCTCCACACCACTCCCAAGAAAGTGATGATGGCTTCTaGAGTGAGCACAGTCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: HSTYSRAQQTRAPHHSQESDDGF*SEHSLF Trigger: GAAAAGACTGTGCTCACTCAAGAAGCCATCATCACT...TTCTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS-3UTR CAA 90 bp | ACAGCACCTACAGCAGAGCCCAGCAGACCAGGGCTCCACACCACTCCCAAGAAAAGTGATGATGGCTTCTaGAGTGAGCACAGTCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: TAPTAEPSRPGLHTTPKKSDDGF*SEHSLF Trigger: GAAAAGACTGTGCTCACTCAAGAAGCCATCATCACT...TTTCTTGGGAGTGGTGTGGAGCCCTGGTCTGCTGGGCTCTGCTGTAGGTGCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS GCA 72 bp | GGCGCAGACTGTGCAGGCGCCCACAGCCATCCACGCTaGGCTCCAGCACATCCACGCCCACGACGCAGGGGT | + |
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Preference number: 6 (lower is better) Translates to: GADCAGAHSHPR*APAHPRPRRRG Trigger: ACCCCTGCGTCGTGGGCGTGGATGTGCTGGAGCGCAGCGTGGATGGCTGTGGGCGCCTGCACAGTCTGCGCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS GCA 72 bp | GGCAGCCCCCATTCGGTACTGAGCAGGCGCAGACTGTaGAGGCGCCCACAGCCATCCACGCTGCGCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: GSPHSVLSRRRL*RRPQPSTLRSS Trigger: GCTGGAGCGCAGCGTGGATGGCTGTGGGCGCCTGCACAGTCTGCGCCTGCTCAGTACCGAATGGGGGCTGCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS TCA 72 bp | TCGCTCGCACGAGGCCAGGCAGCCCCCATTCGGTACTaGGCAGGCGCAGACTGTGCAGGCGCCCACAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: SLARGQAAPIRY*AGADCAGAHSH Trigger: ATGGCTGTGGGCGCCTGCACAGTCTGCGCCTGCTCAGTACCGAATGGGGGCTGCCTGGCCTCGTGCGAGCGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS CAA 90 bp | GCCGGATCCACGACGGAGCGCTCTTTGATGTACGTCAAGGTCCTGTaGGCTCCCAAAATCGCTCGCACGAGGCCAGGCAGCCCCCATTCG | + |
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Preference number: 6 (lower is better) Translates to: AGSTTERSLMYVKVL*APKIARTRPGSPHS Trigger: CGAATGGGGGCTGCCTGGCCTCGTGCGAGCGATTTTGGGAGCCAACAGGACCTTGACGTACATCAAAGAGCGCTCCGTCGTGGATCCGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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| CDS CAA 72 bp | CCAGGGCCCTGTCCTGAGGCGTTCACCTTCTTAGCATaGGAGGATATCGTGGTGGCCATCAGACTTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PGPCPEAFTFLA*EDIVVAIRLSR Trigger: CCTGGAAAGTCTGATGGCCACCACGATATCCTCCAATGCTAAGAAGGTGAACGCCTCAGGACAGGGCCCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235414.2 |
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| CDS CAA 90 bp | TACACCAACCTCTCATTCACTGACACCAGATTCGTGAGCGTGATATaGGTGGAGCACAGCTCCATTTTCCTGGCAGCCGGATCCACGACG | + |
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Preference number: 6 (lower is better) Translates to: YTNLSFTDTRFVSVI*VEHSSIFLAAGSTT Trigger: CGTCGTGGATCCGGCTGCCAGGAAAATGGAGCTGTGCTCCACCAATATCACGCTCACGAATCTGGTGTCAGTGAATGAGAGGTTGGTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025411.9 ENSMUST00000235414.2 |
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