Pregenerated sensors for PRELID2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056671Ensembl transcript IDs: ENSMUST00000070949.6, ENSMUST00000235606.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | CTCTGTCCTGAAACCACCATCCAGTCATTGTGTCTATaGTGTCATGGCCAAGAAGTGAGTCTCGAGGAAAAG | + |
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Preference number: 3 (lower is better) Translates to: LCPETTIQSLCL*CHGQEVSLEEK Trigger: CTTTTCCTCGAGACTCACTTCTTGGCCATGACATCATAGACACAATGACTGGATGGTGGTTTCAGGACAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235606.2 |
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| CDS-3UTR CCA 90 bp | GTCCCCTCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTCATTGCTCGAAGGGGTACTaGAACACCTGGTGCACGTCC | + |
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Preference number: 4 (lower is better) Translates to: VPSSLSPSDSVLKPPSSHCSKGY*NTWCTS Trigger: GGACGTGCACCAGGTGTTCCAGTACCCCTTCGAGCA...ATGACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGAGGGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR CCA 90 bp | AAGGTCCCCTCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTTGCTCGAAGGGGTACTaGAACACCTGGTGCACGTCC | + |
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Preference number: 4 (lower is better) Translates to: KVPSSLSPSDSVLKPPSSCSKGY*NTWCTS Trigger: GGACGTGCACCAGGTGTTCCAGTACCCCTTCGAGCA...ACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGAGGGGACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR GCA 90 bp | GTCAAGTCTGTGTCTAGCAGGAAGGTCCCCTCTTCTCTAAGCCCCTCTGACTCTAAGCAAGCGACCACCTaGTCGAAGGGGTACTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: VKSVSSRKVPSSLSPSDSKQATT*SKGYWN Trigger: GTTCCAGTACCCCTTCGAGCAGGTGGTCGCTTGCTT...AGAGTCAGAGGGGCTTAGAGAAGAGGGGACCTTCCTGCTAGACACAGACTTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| 3UTR CAA 72 bp | CAGGTGATAAACCTCCAGCTCTGTGAGTCCTGTGATTaGAAGCAGGCCCCAAAGGGGAGGGAGTGTCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: QVINLQLCESCD*KQAPKGRECQV Trigger: GACTTGACACTCCCTCCCCTTTGGGGCCTGCTTCAAATCACAGGACTCACAGAGCTGGAGGTTTATCACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235606.2 |
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| CDS-3UTR GCA 90 bp | GTCAAGTCTGTGTCTAGCAGGAAGGTCCCCTCTTCTCTAAGCCCCTCTGACTCTCTCTTCCCTCATGGATaGATACTGTGTCCACGTGAG | + |
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Preference number: 4 (lower is better) Translates to: VKSVSSRKVPSSLSPSDSLFPHG*ILCPRE Trigger: CTCACGTGGACACAGTATGCATCCATGAGGGAAGAG...AGAGTCAGAGGGGCTTAGAGAAGAGGGGACCTTCCTGCTAGACACAGACTTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR TCA 90 bp | GTCAAGTCTGTGTCTAGCAGGAAGGTCCCCTCTTCTCTAAGCCCCTCTGACTCTGCCATGTTCCTTTTCTaGAGACTGAGCCATGACTCT | + |
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Preference number: 4 (lower is better) Translates to: VKSVSSRKVPSSLSPSDSAMFLF*RLSHDS Trigger: AGAGTCATGGCTCAGTCTTCAGAAAAGGAACATGGC...AGAGTCAGAGGGGCTTAGAGAAGAGGGGACCTTCCTGCTAGACACAGACTTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR GCA 90 bp | CTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTCATTGTGTCTATGATAAGCAAGCGACCACCTaGTCGAAGGGGTACTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: LSPSDSVLKPPSSHCVYDKQATT*SKGYWN Trigger: GTTCCAGTACCCCTTCGAGCAGGTGGTCGCTTGCTT...ATCATAGACACAATGACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR GCA 90 bp | AGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTCATTGTGTCTATGATGTCCTCTTCCCTCATGGATaGATACTGTGTCCACGTGAG | + |
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Preference number: 4 (lower is better) Translates to: SPSDSVLKPPSSHCVYDVLFPHG*ILCPRE Trigger: CTCACGTGGACACAGTATGCATCCATGAGGGAAGAG...GACATCATAGACACAATGACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235606.2 |
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| CDS-3UTR CCA 90 bp | TCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTCATTGTGTCTGGCAGCTTCCCTTCTaGGCTCCTTGTCTTAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: SSLSPSDSVLKPPSSHCVWQLPF*APCLKN Trigger: GTTCTTAAGACAAGGAGCCCAGAAGGGAAGCTGCCA...GACACAATGACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070949.6 |
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| CDS-3UTR TCA 90 bp | AAGGTCCCCTCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTTCTGGAACCACATTCTaGCAGATAGCAATCCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: KVPSSLSPSDSVLKPPSSSGTTF*QIAILF Trigger: AAAGAGGATTGCTATCTGTCAGAATGTGGTTCCAGA...ACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGAGGGGACCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR TCA 90 bp | AAGGTCCCCTCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTTCCTTTTCTGAAGACTaGGCCATGACTCTTCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: KVPSSLSPSDSVLKPPSSSFSED*AMTLLL Trigger: TAGAAGAAGAGTCATGGCTCAGTCTTCAGAAAAGGA...ACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGAGGGGACCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR TCA 90 bp | AAAGACCAGGTGATAAACCTCCAGCTCTGTGAGTCCTGTGATTTGAAGCAGGCCGCCATGTTCCTTTTCTaGAGACTGAGCCATGACTCT | + |
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Preference number: 4 (lower is better) Translates to: KDQVINLQLCESCDLKQAAMFLF*RLSHDS Trigger: AGAGTCATGGCTCAGTCTTCAGAAAAGGAACATGGC...GGCCTGCTTCAAATCACAGGACTCACAGAGCTGGAGGTTTATCACCTGGTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235606.2 |
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| CDS-3UTR CCA 90 bp | AAGGTCCCCTCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTGAACTCTGTCCAATTTaGATTTTCTACGCTTTCCCG | + |
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Preference number: 4 (lower is better) Translates to: KVPSSLSPSDSVLKPPSSELCPI*IFYAFP Trigger: CGGGAAAGCGTAGAAAATCCAAATTGGACAGAGTTC...ACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGAGGGGACCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR TCA 90 bp | AAGGTCCCCTCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTTCCTCTTTCTATAGATaGGTCCTGTTGATTCATCTT | + |
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Preference number: 4 (lower is better) Translates to: KVPSSLSPSDSVLKPPSSSSFYR*VLLIHL Trigger: AAGATGAATCAACAGGACTCATCTATAGAAAGAGGA...ACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGAGGGGACCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR TCA 90 bp | TCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTCATTGTGTCTTCGGCCTGTTTGAATaGACTCTGTCCAATTTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SSLSPSDSVLKPPSSHCVFGLFE*TLSNLD Trigger: ATCCAAATTGGACAGAGTTCATTCAAACAGGCCGAA...GACACAATGACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR CCA 90 bp | TCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTCATTGTGTCGAACTCTGTCCAATTTaGATTTTCTACGCTTTCCCG | + |
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Preference number: 4 (lower is better) Translates to: SSLSPSDSVLKPPSSHCVELCPI*IFYAFP Trigger: CGGGAAAGCGTAGAAAATCCAAATTGGACAGAGTTC...GACACAATGACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR TCA 90 bp | CTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTCATTGTGTCTATGATTCTGGAACCACATTCTaGCAGATAGCAATCCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: LSPSDSVLKPPSSHCVYDSGTTF*QIAILF Trigger: AAAGAGGATTGCTATCTGTCAGAATGTGGTTCCAGA...ATCATAGACACAATGACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR TCA 90 bp | TCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTCATTGTGTCGAAATTCGGCCTGTTTaGATGAACTCTGTCCAATTT | + |
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Preference number: 4 (lower is better) Translates to: SSLSPSDSVLKPPSSHCVEIRPV*MNSVQF Trigger: AAATTGGACAGAGTTCATTCAAACAGGCCGAATTTC...GACACAATGACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR TCA 90 bp | AGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTCATTGTGTCTATGATGTCGAAATTCGGCCTGTTTaGATGAACTCTGTCCAATTT | + |
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Preference number: 4 (lower is better) Translates to: SPSDSVLKPPSSHCVYDVEIRPV*MNSVQF Trigger: AAATTGGACAGAGTTCATTCAAACAGGCCGAATTTC...GACATCATAGACACAATGACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235606.2 |
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| CDS-3UTR TCA 90 bp | TCTGTCCTGAAACCACCATCCAGTCATTGTGTCTATGATGTCATGGCCAAGAAGTTCGGCCTGTTTGAATaGACTCTGTCCAATTTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SVLKPPSSHCVYDVMAKKFGLFE*TLSNLD Trigger: ATCCAAATTGGACAGAGTTCATTCAAACAGGCCGAA...CTTCTTGGCCATGACATCATAGACACAATGACTGGATGGTGGTTTCAGGACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235606.2 |
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| CDS-3UTR TCA 90 bp | CATCCAGTCATTGTGTCTATGATGTCATGGCCAAGAAGTGAGTCTCGAGGAAAATCCTCTTTCTATAGATaGGTCCTGTTGATTCATCTT | + |
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Preference number: 4 (lower is better) Translates to: HPVIVSMMSWPRSESRGKSSFYR*VLLIHL Trigger: AAGATGAATCAACAGGACTCATCTATAGAAAGAGGA...TTTTCCTCGAGACTCACTTCTTGGCCATGACATCATAGACACAATGACTGGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235606.2 |
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| CDS GCA 90 bp | TTATCCATTGGATTGGGATACTTTCGGAGGAAGCAAGCGACCACCTaGTCGAAGGGGTACTGGAACACCTGGTGCACGTCCACGGTGACC | + |
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Preference number: 5 (lower is better) Translates to: LSIGLGYFRRKQATT*SKGYWNTWCTSTVT Trigger: GGTCACCGTGGACGTGCACCAGGTGTTCCAGTACCCCTTCGAGCAGGTGGTCGCTTGCTTCCTCCGAAAGTATCCCAATCCAATGGATAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR CAA 90 bp | AAGGTCCCCTCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTGTTTCCAAAATACAGTaGAGAAACCCAGCCCCCGTG | + |
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Preference number: 5 (lower is better) Translates to: KVPSSLSPSDSVLKPPSSVSKIQ*RNPAPV Trigger: CACGGGGGCTGGGTTTCTCAACTGTATTTTGGAAAC...ACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGAGGGGACCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS-3UTR CAA 90 bp | TCTTCTCTAAGCCCCTCTGACTCTGTCCTGAAACCACCATCCAGTCATTGTGTCGTTTCCAAAATACAGTaGAGAAACCCAGCCCCCGTG | + |
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Preference number: 5 (lower is better) Translates to: SSLSPSDSVLKPPSSHCVVSKIQ*RNPAPV Trigger: CACGGGGGCTGGGTTTCTCAACTGTATTTTGGAAAC...GACACAATGACTGGATGGTGGTTTCAGGACAGAGTCAGAGGGGCTTAGAGAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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| CDS GCA 72 bp | GGATTGGGATACTTTCGGAGGAAGCAAGCGACCACCTaGTCGAAGGGGTACTGGAACACCTGGTGCACGTCC | + |
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Preference number: 6 (lower is better) Translates to: GLGYFRRKQATT*SKGYWNTWCTS Trigger: GGACGTGCACCAGGTGTTCCAGTACCCCTTCGAGCAGGTGGTCGCTTGCTTCCTCCGAAAGTATCCCAATCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000070949.6 ENSMUST00000235606.2 |
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