Pregenerated sensors for PRELID1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021486Ensembl transcript IDs: ENSMUST00000021942.8
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | TGCACCCCTCTGCCCGGCAGACAGAGCTGGGTGTGGTGCAGATGCTaGCCAGGACAGGGCCCTGACCCACCACCCCAGACAGCAGAGAGG | + |
Preference number: 1 (lower is better) Translates to: CTPLPGRQSWVWCRC*PGQGPDPPPQTAER Trigger: CCTCTCTGCTGTCTGGGGTGGTGGGTCAGGGCCCTGTCCTGGTCAGCATCTGCACCACACCCAGCTCTGTCTGCCGGGCAGAGGGGTGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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3UTR GCA 90 bp | TCACCTGCGCACTGCTGTGACCTTGGGCAAGTCACTGCACCCCTCTaGCCGGCAGACAGAGCTGGGTGTGGTGCAGATGCTGACCAGGAC | + |
Preference number: 1 (lower is better) Translates to: SPAHCCDLGQVTAPL*PADRAGCGADADQD Trigger: GTCCTGGTCAGCATCTGCACCACACCCAGCTCTGTCTGCCGGGCAGAGGGGTGCAGTGACTTGCCCAAGGTCACAGCAGTGCGCAGGTGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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3UTR TCA 90 bp | CAGACAGAGCTGGGTGTGGTGCAGATGCTGACCAGGACAGGGCCCTaGCCCACCACCCCAGACAGCAGAGAGGGCTGCAGGTTGCTCTTT | + |
Preference number: 1 (lower is better) Translates to: QTELGVVQMLTRTGP*PTTPDSREGCRLLF Trigger: AAAGAGCAACCTGCAGCCCTCTCTGCTGTCTGGGGTGGTGGGTCAGGGCCCTGTCCTGGTCAGCATCTGCACCACACCCAGCTCTGTCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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3UTR GCA 90 bp | AAGGAGCCCTGCCCTCTTGGAGCGTACAGTCTATCACCTGCGCACTaGTGTGACCTTGGGCAAGTCACTGCACCCCTCTGCCCGGCAGAC | + |
Preference number: 1 (lower is better) Translates to: KEPCPLGAYSLSPAH*CDLGQVTAPLCPAD Trigger: GTCTGCCGGGCAGAGGGGTGCAGTGACTTGCCCAAGGTCACAGCAGTGCGCAGGTGATAGACTGTACGCTCCAAGAGGGCAGGGCTCCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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3UTR-3UTR TCA 90 bp | GCGTACAGTCTATCACCTGCGCACTGCTGTGACCTTGGGCAAGTCACTGCACCCACCAGGACAGGGCCCTaGCCCACCACCCCAGACAGC | + |
Preference number: 2 (lower is better) Translates to: AYSLSPAHCCDLGQVTAPTRTGP*PTTPDS Trigger: GCTGTCTGGGGTGGTGGGTCAGGGCCCTGTCCTGGT...GGGTGCAGTGACTTGCCCAAGGTCACAGCAGTGCGCAGGTGATAGACTGTACGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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3UTR-3UTR CCA 90 bp | CCTTGGGCAAGTCACTGCACCCCTCTGCCCGGCAGACAGAGCTGGGTGTGGTGCAATAATCACGTACACTaGGGAGAGGGAGAGGAAGCG | + |
Preference number: 2 (lower is better) Translates to: PWASHCTPLPGRQSWVWCNNHVH*GEGEEA Trigger: CGCTTCCTCTCCCTCTCCCCAGTGTACGTGATTATT...GCACCACACCCAGCTCTGTCTGCCGGGCAGAGGGGTGCAGTGACTTGCCCAAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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3UTR-3UTR TCA 90 bp | AGGGTACTTGGGACACAGCAGAGAATAAAACAAGGAGCCCTGCCCTCTTGGAGCGTGTGGTGCAGATGCTaGCCAGGACAGGGCCCTGAC | + |
Preference number: 2 (lower is better) Translates to: RVLGTQQRIKQGALPSWSVWCRC*PGQGPD Trigger: GTCAGGGCCCTGTCCTGGTCAGCATCTGCACCACAC...GCTCCAAGAGGGCAGGGCTCCTTGTTTTATTCTCTGCTGTGTCCCAAGTACCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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3UTR TCA 72 bp | CTGGGTGTGGTGCAGATGCTGACCAGGACAGGGCCCTaGCCCACCACCCCAGACAGCAGAGAGGGCTGCAGG | + |
Preference number: 3 (lower is better) Translates to: LGVVQMLTRTGP*PTTPDSREGCR Trigger: CCTGCAGCCCTCTCTGCTGTCTGGGGTGGTGGGTCAGGGCCCTGTCCTGGTCAGCATCTGCACCACACCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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3UTR TCA 72 bp | TCTTGGAGCGTACAGTCTATCACCTGCGCACTGCTGTaGCCTTGGGCAAGTCACTGCACCCCTCTGCCCGGC | + |
Preference number: 3 (lower is better) Translates to: SWSVQSITCALL*PWASHCTPLPG Trigger: GCCGGGCAGAGGGGTGCAGTGACTTGCCCAAGGTCACAGCAGTGCGCAGGTGATAGACTGTACGCTCCAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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CDS-3UTR GCA 90 bp | CAAGTCACTGCACCCCTCTGCCCGGCAGACAGAGCTGGGTGTGGTGCAGATGCTAGCTGCCGCTGCTGCTaGTTGGTGGCGGCCTTGTTG | + |
Preference number: 4 (lower is better) Translates to: QVTAPLCPADRAGCGADASCRCC*LVAALL Trigger: CAACAAGGCCGCCACCAAGCAGCAGCAGCGGCAGCT...AGCATCTGCACCACACCCAGCTCTGTCTGCCGGGCAGAGGGGTGCAGTGACTTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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CDS-3UTR GCA 90 bp | GGGCAAGTCACTGCACCCCTCTGCCCGGCAGACAGAGCTGGGTGTGGTGCAGATCAGTGCGGTCTCCTTTaGTTTCTCTTTGGCCTCTTT | + |
Preference number: 4 (lower is better) Translates to: GQVTAPLCPADRAGCGADQCGLL*FLFGLF Trigger: AAAGAGGCCAAAGAGAAAGCAAAGGAGACCGCACTG...ATCTGCACCACACCCAGCTCTGTCTGCCGGGCAGAGGGGTGCAGTGACTTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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CDS-3UTR CCA 90 bp | AATATTGTTCAGGGTACTTGGGACACAGCAGAGAATAAAACAAGGAGCCCTGCCGCCGCTGCTGCTGCTTaGTGGCGGCCTTGTTGGCCA | + |
Preference number: 4 (lower is better) Translates to: NIVQGTWDTAENKTRSPAAAAAA*WRPCWP Trigger: TGGCCAACAAGGCCGCCACCAAGCAGCAGCAGCGGC...GGCAGGGCTCCTTGTTTTATTCTCTGCTGTGTCCCAAGTACCCTGAACAATATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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3UTR CAA 72 bp | GACACAGCAGAGAATAAAACAAGGAGCCCTGCCCTCTaGGAGCGTACAGTCTATCACCTGCGCACTGCTGTG | + |
Preference number: 4 (lower is better) Translates to: DTAENKTRSPAL*ERTVYHLRTAV Trigger: CACAGCAGTGCGCAGGTGATAGACTGTACGCTCCAAGAGGGCAGGGCTCCTTGTTTTATTCTCTGCTGTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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CDS-3UTR CCA 90 bp | CAGGGTACTTGGGACACAGCAGAGAATAAAACAAGGAGCCCTGCCCTCTTGGAGCCTCACCTTGTAGCTTaGCCAGGATGTATTCAAAGC | + |
Preference number: 4 (lower is better) Translates to: QGTWDTAENKTRSPALLEPHLVA*PGCIQS Trigger: GCTTTGAATACATCCTGGCCAAGCTACAAGGTGAGG...CTCCAAGAGGGCAGGGCTCCTTGTTTTATTCTCTGCTGTGTCCCAAGTACCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |
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CDS-3UTR CAA 90 bp | ACAGCAGAGAGGGCTGCAGGTTGCTCTTTAATAATCACGTACACTGGGGAGAGGTGCCGCTGCTGCTGCTaGGTGGCGGCCTTGTTGGCC | + |
Preference number: 5 (lower is better) Translates to: TAERAAGCSLIITYTGERCRCCC*VAALLA Trigger: GGCCAACAAGGCCGCCACCAAGCAGCAGCAGCGGCA...CCTCTCCCCAGTGTACGTGATTATTAAAGAGCAACCTGCAGCCCTCTCTGCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021942.8 |