RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PREB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045302

Ensembl transcript IDs: ENSMUST00000074840.12, ENSMUST00000201002.4, ENSMUST00000201821.4, ENSMUST00000202567.2

Found 345 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGCCCAGAAGTCTCCCTATGTGGCCCTGCTCATCACAGCTCGGGGTaGCCACATTGGCTTCCTGGAAGGGCTGATGCCCTGGCAACACTG +
Preference number: 1 (lower is better)
Translates to: CPEVSLCGPAHHSSG*PHWLPGRADALATL
Trigger: CAGTGTTGCCAGGGCATCAGCCCTTCCAGGAAGCCAATGTGGCCACCCCGAGCTGTGATGAGCAGGGCCACATAGGGAGACTTCTGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp TACCAACCCCCTACCCTTCCTGAGCCCTTCCGCTTGGCTGTCTTCTaGCAAGAGCCTCCCTCCCTAGTCAATGACCCGCTTTGCCCTCAG +
Preference number: 1 (lower is better)
Translates to: YQPPTLPEPFRLAVF*QEPPSLVNDPLCPQ
Trigger: CTGAGGGCAAAGCGGGTCATTGACTAGGGAGGGAGGCTCTTGCCAGAAGACAGCCAAGCGGAAGGGCTCAGGAAGGGTAGGGGGTTGGTA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp AGTGAAGTCCTCCAGACCCCAGATGGAGGCCAGTTCCTTCTAGACTaGGCCGAGCAGCCTAACAGCACTCACTACCCGGACCCTACCACC +
Preference number: 1 (lower is better)
Translates to: SEVLQTPDGGQFLLD*AEQPNSTHYPDPTT
Trigger: GGTGGTAGGGTCCGGGTAGTGAGTGCTGTTAGGCTGCTCGGCCCAGTCTAGAAGGAACTGGCCTCCATCTGGGGTCTGGAGGACTTCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp CACTGCTCTTCAATCAGCCACTCACTGCTGGACTCTGCCGGCTTGTaGCCAGGTAGGATAGCAGATGGCAGGCTCTGCCAGTGCTTGGGT +
Preference number: 1 (lower is better)
Translates to: HCSSISHSLLDSAGL*PGRIADGRLCQCLG
Trigger: ACCCAAGCACTGGCAGAGCCTGCCATCTGCTATCCTACCTGGCCACAAGCCGGCAGAGTCCAGCAGTGAGTGGCTGATTGAAGAGCAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 90 bp AGGTATGAGCCTGGGTTCTCATTCCCGGACAGCTTTCTGACCTCCTaGCTCCCTTCTAGCCTTCCCTCTGCAGGCTGCCCAGAAGTCTCC +
Preference number: 1 (lower is better)
Translates to: RYEPGFSFPDSFLTS*LPSSLPSAGCPEVS
Trigger: GGAGACTTCTGGGCAGCCTGCAGAGGGAAGGCTAGAAGGGAGTCAGGAGGTCAGAAAGCTGTCCGGGAATGAGAACCCAGGCTCATACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 90 bp CTTCCGCTTGGCTGTCTTCTGGCAAGAGCCTCCCTCCCTAGTCAATaGCCCGCTTTGCCCTCAGACTCACAGGGCTTACTGTGCCAGCAA +
Preference number: 1 (lower is better)
Translates to: LPLGCLLARASLPSQ*PALPSDSQGLLCQQ
Trigger: TTGCTGGCACAGTAAGCCCTGTGAGTCTGAGGGCAAAGCGGGTCATTGACTAGGGAGGGAGGCTCTTGCCAGAAGACAGCCAAGCGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 90 bp TGTGGTGCTTTGAGGGACGGCTGCAAACCATCTTCCGAGTCCTCCTaGAGTCTCAGCCTGTGGTCCCTTACCGGAGGTAAGAAGGGTCAG +
Preference number: 1 (lower is better)
Translates to: CGALRDGCKPSSESS*SLSLWSLTGGKKGQ
Trigger: CTGACCCTTCTTACCTCCGGTAAGGGACCACAGGCTGAGACTGCAGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 90 bp CTGTGGAGACTTTCTACCCGACACTGTGGTGCTTTGAGGGACGGCTaGAAACCATCTTCCGAGTCCTCCTGCAGTCTCAGCCTGTGGTCC +
Preference number: 1 (lower is better)
Translates to: LWRLSTRHCGALRDG*KPSSESSCSLSLWS
Trigger: GGACCACAGGCTGAGACTGCAGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 90 bp TTGAGGAGGGGACAGGCTGAGTGTGGGAGTCAGTACCTCGACAACTaGTGCAGTCCTTCCTTCAGGGTCAGTCCCGGAGGGGACACTTTA +
Preference number: 1 (lower is better)
Translates to: LRRGQAECGSQYLDN*CSPSFRVSPGGDTL
Trigger: TAAAGTGTCCCCTCCGGGACTGACCCTGAAGGAAGGACTGCAGCAGTTGTCGAGGTACTGACTCCCACACTCAGCCTGTCCCCTCCTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp GTCTCCCTATGTGGCCCTGCTCATCACAGCTCGGGGTGGCCACATTaGCTTCCTGGAAGGGCTGATGCCCTGGCAACACTGTTACATGAA +
Preference number: 1 (lower is better)
Translates to: VSLCGPAHHSSGWPH*LPGRADALATLLHE
Trigger: TTCATGTAACAGTGTTGCCAGGGCATCAGCCCTTCCAGGAAGCCAATGTGGCCACCCCGAGCTGTGATGAGCAGGGCCACATAGGGAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp GGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTGTaGAGACTTTCTACCCGACACTGTGGTGCTTTGAGGGACGGCTGC +
Preference number: 1 (lower is better)
Translates to: GPSFWPSWNNTVQSL*RLSTRHCGALRDGC
Trigger: GCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp GACGGCTGCAAACCATCTTCCGAGTCCTCCTGCAGTCTCAGCCTGTaGTCCCTTACCGGAGGTAAGAAGGGTCAGGACCAGGAACACAAA +
Preference number: 1 (lower is better)
Translates to: DGCKPSSESSCSLSL*SLTGGKKGQDQEHK
Trigger: TTTGTGTTCCTGGTCCTGACCCTTCTTACCTCCGGTAAGGGACCACAGGCTGAGACTGCAGGAGGACTCGGAAGATGGTTTGCAGCCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 90 bp CTCCCAAGACCCAGAGTGATCGAGAGGCCACCGCCAAGTGTGAGCTaGGGGACAAGCAGTACCCATCAGTTTCATCAGATGCAGCTTCAG +
Preference number: 1 (lower is better)
Translates to: LPRPRVIERPPPSVS*GTSSTHQFHQMQLQ
Trigger: CTGAAGCTGCATCTGATGAAACTGATGGGTACTGCTTGTCCCTCAGCTCACACTTGGCGGTGGCCTCTCGATCACTCTGGGTCTTGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR TCA 90 bp TGTGGCCTGAGCTTCAGACCACAATGTCTTAAGTGGATCCACAGGTaGAGGCAAGAGCTCCCAAGACCCAGAGTGATCGAGAGGCCACCG +
Preference number: 1 (lower is better)
Translates to: CGLSFRPQCLKWIHR*RQELPRPRVIERPP
Trigger: CGGTGGCCTCTCGATCACTCTGGGTCTTGGGAGCTCTTGCCTTCACCTGTGGATCCACTTAAGACATTGTGGTCTGAAGCTCAGGCCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR TCA 90 bp CTGTCCAGTCACTGTGGAGACTTTCTACCCGACACTGTGGTGCTTTaGGGGACGGCTGCAAACCATCTTCCGAGTCCTCCTGCAGTCTCA +
Preference number: 1 (lower is better)
Translates to: LSSHCGDFLPDTVVL*GTAANHLPSPPAVS
Trigger: TGAGACTGCAGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTGGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 90 bp GCTGTCTTCTGGCAAGAGCCTCCCTCCCTAGTCAATGACCCGCTTTaGCCTCAGACTCACAGGGCTTACTGTGCCAGCAATACTGAAGAC +
Preference number: 1 (lower is better)
Translates to: AVFWQEPPSLVNDPL*PQTHRAYCASNTED
Trigger: GTCTTCAGTATTGCTGGCACAGTAAGCCCTGTGAGTCTGAGGGCAAAGCGGGTCATTGACTAGGGAGGGAGGCTCTTGCCAGAAGACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 90 bp CAACACTGTCCAGTCACTGTGGAGACTTTCTACCCGACACTGTGGTaGTTTGAGGGACGGCTGCAAACCATCTTCCGAGTCCTCCTGCAG +
Preference number: 1 (lower is better)
Translates to: QHCPVTVETFYPTLW*FEGRLQTIFRVLLQ
Trigger: CTGCAGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTGGACAGTGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp CACAGGCCCGCACGATCCGCCAGCTGGATGAGCGCTACACATCTGTaGCTTTTGGGTATAAAGACTGTGCGGCTTATTACCAAGCCGCAA +
Preference number: 1 (lower is better)
Translates to: HRPARSASWMSATHL*LLGIKTVRLITKPQ
Trigger: TTGCGGCTTGGTAATAAGCCGCACAGTCTTTATACCCAAAAGCCACAGATGTGTAGCGCTCATCCAGCTGGCGGATCGTGCGGGCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp TTCAGGGTCAGTCCCGGAGGGGACACTTTAGGACTGTGGTTTTTGTaGGGCACCATATGCCACTCTAGGCTGAGCTGTGCTGGACACTTG +
Preference number: 1 (lower is better)
Translates to: FRVSPGGDTLGLWFL*GTICHSRLSCAGHL
Trigger: CAAGTGTCCAGCACAGCTCAGCCTAGAGTGGCATATGGTGCCCCACAAAAACCACAGTCCTAAAGTGTCCCCTCCGGGACTGACCCTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp TTTCATCAGATGCAGCTTCAGCCGTGGGGCTCAGTGATTCTGCTCTaGAAGGCGGCACTGTCCAAGGCTGATTCCCATCGCTCTAGAGGT +
Preference number: 1 (lower is better)
Translates to: FHQMQLQPWGSVILL*KAALSKADSHRSRG
Trigger: ACCTCTAGAGCGATGGGAATCAGCCTTGGACAGTGCCGCCTTCCAGAGCAGAATCACTGAGCCCCACGGCTGAAGCTGCATCTGATGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR TCA 90 bp AGTGCCTGCAACGAGGTCCTGATCCCACAGCTACTGAGCCATAGATaGGGGTTGAGGTATGAGCCTGGGTTCTCATTCCCGGACAGCTTT +
Preference number: 1 (lower is better)
Translates to: SACNEVLIPQLLSHR*GLRYEPGFSFPDSF
Trigger: AAAGCTGTCCGGGAATGAGAACCCAGGCTCATACCTCAACCCTCATCTATGGCTCAGTAGCTGTGGGATCAGGACCTCGTTGCAGGCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 90 bp GGCAGGCTCTGCCAGTGCTTGGGTCCATTCCAATCTGGGCTTTCTTaGGGAGGTAAGAAGACAGAAGCTGTGAGCTCTGGGTTAGGTGCA +
Preference number: 1 (lower is better)
Translates to: GRLCQCLGPFQSGLS*GGKKTEAVSSGLGA
Trigger: TGCACCTAACCCAGAGCTCACAGCTTCTGTCTTCTTACCTCCTCAAGAAAGCCCAGATTGGAATGGACCCAAGCACTGGCAGAGCCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 90 bp ACTATCTGGCACAGACTGGGAAGGCTGGAGGCTTGGTCGCAGGACTaGCCATTGTCTGCATGTTGGGATTCCTTTGAGACCGTTGACTCC +
Preference number: 1 (lower is better)
Translates to: TIWHRLGRLEAWSQD*PLSACWDSFETVDS
Trigger: GGAGTCAACGGTCTCAAAGGAATCCCAACATGCAGACAATGGTCAGTCCTGCGACCAAGCCTCCAGCCTTCCCAGTCTGTGCCAGATAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 90 bp TGTGGCAAATCCATCCTTAAGGCTGGATTCCGGGGAGGAGCTCACTaGCCCTCCAGTGTCTGGGACAGGACAACAAAAGAGGCCAATGTG +
Preference number: 1 (lower is better)
Translates to: CGKSILKAGFRGGAH*PSSVWDRTTKEANV
Trigger: CACATTGGCCTCTTTTGTTGTCCTGTCCCAGACACTGGAGGGTCAGTGAGCTCCTCCCCGGAATCCAGCCTTAAGGATGGATTTGCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 90 bp ATTCCTTTGAGACCGTTGACTCCTTGGAGACCCCACTCAACTCACTaGTCTTCAATCAGCCACTCACTGCTGGACTCTGCCGGCTTGTGG +
Preference number: 1 (lower is better)
Translates to: IPLRPLTPWRPHSTH*SSISHSLLDSAGLW
Trigger: CCACAAGCCGGCAGAGTCCAGCAGTGAGTGGCTGATTGAAGAGCAGTGAGTTGAGTGGGGTCTCCAAGGAGTCAACGGTCTCAAAGGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp ACCGCGTACTACATCAGTATGCCCGAGCCATCTTCCAGCACTCAGTaGGGCTACCTGACCTGGGAGTACTCACTCCTGAAGATGGAAAGA +
Preference number: 1 (lower is better)
Translates to: TAYYISMPEPSSSTQ*GYLTWEYSLLKMER
Trigger: TCTTTCCATCTTCAGGAGTGAGTACTCCCAGGTCAGGTAGCCCCACTGAGTGCTGGAAGATGGCTCGGGCATACTGATGTAGTACGCGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp GAACAACACTGTCCAGTCACTGTGGAGACTTTCTACCCGACACTGTaGTGCTTTGAGGGACGGCTGCAAACCATCTTCCGAGTCCTCCTG +
Preference number: 1 (lower is better)
Translates to: EQHCPVTVETFYPTL*CFEGRLQTIFRVLL
Trigger: CAGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTGGACAGTGTTGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 90 bp CCAATAAAGAACCAAGCGAAGAGGCAGAAGAGAGTCAGGGCTTGGTaGCCATCAACCTCGTTTGTCCCCATTGTCCCATCACTGTGCCCT +
Preference number: 1 (lower is better)
Translates to: PIKNQAKRQKRVRAW*PSTSFVPIVPSLCP
Trigger: AGGGCACAGTGATGGGACAATGGGGACAAACGAGGTTGATGGGCACCAAGCCCTGACTCTCTTCTGCCTCTTCGCTTGGTTCTTTATTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp AAGAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTGGTGGCTaGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCAC +
Preference number: 1 (lower is better)
Translates to: KRPMCCMIIEASSGG*APVSGLPGTTLSSH
Trigger: GTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCTATAATCATACAACACATTGGCCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp ACAAAAGAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTGGTaGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAG +
Preference number: 1 (lower is better)
Translates to: TKEANVLYDYRGLVW*LGPSFWPSWNNTVQ
Trigger: CTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCTATAATCATACAACACATTGGCCTCTTTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp ATGCCAATAAAGAACCAAGCGAAGAGGCAGAAGAGAGTCAGGGCTTaGTGCCCATCAACCTCGTTTGTCCCCATTGTCCCATCACTGTGC +
Preference number: 1 (lower is better)
Translates to: MPIKNQAKRQKRVRA*CPSTSFVPIVPSLC
Trigger: GCACAGTGATGGGACAATGGGGACAAACGAGGTTGATGGGCACCAAGCCCTGACTCTCTTCTGCCTCTTCGCTTGGTTCTTTATTGGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp GACCATTGTCTGCATGTTGGGATTCCTTTGAGACCGTTGACTCCTTaGAGACCCCACTCAACTCACTGCTCTTCAATCAGCCACTCACTG +
Preference number: 1 (lower is better)
Translates to: DHCLHVGIPLRPLTP*RPHSTHCSSISHSL
Trigger: CAGTGAGTGGCTGATTGAAGAGCAGTGAGTTGAGTGGGGTCTCCAAGGAGTCAACGGTCTCAAAGGAATCCCAACATGCAGACAATGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp ACAACAAAAGAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTaGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTC +
Preference number: 1 (lower is better)
Translates to: TTKEANVLYDYRGLV*WLGPSFWPSWNNTV
Trigger: GACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCTATAATCATACAACACATTGGCCTCTTTTGTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp TATACTTCTGTCCCTGCAGATCAGTTTGTCCCAGCTTCCATGCTGTaGCTCTCTCAGCTACCTCTAACTCCAGCTCCAGAGGATCCAACA +
Preference number: 1 (lower is better)
Translates to: YTSVPADQFVPASML*LSQLPLTPAPEDPT
Trigger: TGTTGGATCCTCTGGAGCTGGAGTTAGAGGTAGCTGAGAGAGCCACAGCATGGAAGCTGGGACAAACTGATCTGCAGGGACAGAAGTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 90 bp CCCGCTTTGCCCTCAGACTCACAGGGCTTACTGTGCCAGCAATACTaGAGACCTAGAAACAGTTGTGAAGCACATAAAACGTCGCTACTC +
Preference number: 1 (lower is better)
Translates to: PALPSDSQGLLCQQY*RPRNSCEAHKTSLL
Trigger: GAGTAGCGACGTTTTATGTGCTTCACAACTGTTTCTAGGTCTTCAGTATTGCTGGCACAGTAAGCCCTGTGAGTCTGAGGGCAAAGCGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 90 bp TCCTCTTCTGTCCCAGTGTTCCCATGCCAACACTTTCCATGGCCCTaGATCCAATTTTACAGGATACTGGTGCTTAACTATCTGGCACAG +
Preference number: 1 (lower is better)
Translates to: SSSVPVFPCQHFPWP*IQFYRILVLNYLAQ
Trigger: CTGTGCCAGATAGTTAAGCACCAGTATCCTGTAAAATTGGATGCAGGGCCATGGAAAGTGTTGGCATGGGAACACTGGGACAGAAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 90 bp ATCAGTGGGGTCATGGGGCCTGTTTCTAAGACAGCCACTTGTAGATaGAGGTCATGTAAATTGGGAGTGAAGAGGTGCTTGAATGCTTAC +
Preference number: 1 (lower is better)
Translates to: ISGVMGPVSKTATCR*RSCKLGVKRCLNAY
Trigger: GTAAGCATTCAAGCACCTCTTCACTCCCAATTTACATGACCTTCATCTACAAGTGGCTGTCTTAGAAACAGGCCCCATGACCCCACTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 90 bp TTTTTCTCCTCTTCTGTCCCAGTGTTCCCATGCCAACACTTTCCATaGCCCTGCATCCAATTTTACAGGATACTGGTGCTTAACTATCTG +
Preference number: 1 (lower is better)
Translates to: FFSSSVPVFPCQHFP*PCIQFYRILVLNYL
Trigger: CAGATAGTTAAGCACCAGTATCCTGTAAAATTGGATGCAGGGCCATGGAAAGTGTTGGCATGGGAACACTGGGACAGAAGAGGAGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 90 bp AAAGCTATTGATTCAACTTGTTATAAAAGATCTCTAGGGGTTAAATaGTTACTCCTGGCTACTGGGAAGGCTGAGACAGGAGGATCACTT +
Preference number: 1 (lower is better)
Translates to: KAIDSTCYKRSLGVK*LLLATGKAETGGSL
Trigger: AAGTGATCCTCCTGTCTCAGCCTTCCCAGTAGCCAGGAGTAAGCATTTAACCCCTAGAGATCTTTTATAACAAGTTGAATCAATAGCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp GGAGCCCTGGGAGGGAGGCTGAGGGAACGAGGCAGGCACTGTGGCCTGAGCTTCATGCAGCTTCAGCCGTaGGGCTCAGTGATTCTGCTC +
Preference number: 2 (lower is better)
Translates to: GALGGRLRERGRHCGLSFMQLQP*GSVILL
Trigger: GAGCAGAATCACTGAGCCCCACGGCTGAAGCTGCAT...GAAGCTCAGGCCACAGTGCCTGCCTCGTTCCCTCAGCCTCCCTCCCAGGGCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR TCA 90 bp ACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCCGCCAAGGCCCTTGTGTaGAGGCTGGAGGGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: TEGHRSPLPGSSLCLFLPAKALV*RLEGRR
Trigger: CCTCCTCCCCTCCAGCCTTCACACAAGGGCCTTGGC...GGGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR TCA 90 bp AGAGGCCTCGTCTGGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTCTCCCCAGTCCATGGTaGGTGCCTGCAACGAGGTCC +
Preference number: 2 (lower is better)
Translates to: RGLVWWLGPSFWPSWNNTLPSPW*VPATRS
Trigger: GGACCTCGTTGCAGGCACTCACCATGGACTGGGGAG...AGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp AGAGGCCTCGTCTGGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTACCCCCTACCCTTCCTaGGCCCTTCCGCTTGGCTGT +
Preference number: 2 (lower is better)
Translates to: RGLVWWLGPSFWPSWNNTTPYPS*ALPLGC
Trigger: ACAGCCAAGCGGAAGGGCTCAGGAAGGGTAGGGGGT...AGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp ATCAGCCACTCACTGCTGGACTCTGCCGGCTTGTGGCCAGGTAGGATAGCAGATGCCAAGGCCCTTGTGTaGAGGCTGGAGGGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: ISHSLLDSAGLWPGRIADAKALV*RLEGRR
Trigger: CCTCCTCCCCTCCAGCCTTCACACAAGGGCCTTGGC...ATCTGCTATCCTACCTGGCCACAAGCCGGCAGAGTCCAGCAGTGAGTGGCTGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp GCAGTAGACCCTCCAGGAACTCACTATGTGTCTGGACTGACTGGCTaGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCC +
Preference number: 2 (lower is better)
Translates to: AVDPPGTHYVSGLTG*VLPTEGHRSPLPGS
Trigger: GGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCAGACACATAGTGAGTTCCTGGAGGGTCTACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR CAA 90 bp GCTCTACCTACTTACCAACCCCCTACCCTTCCTGAGCCCTTCCGCTaGGCTGTCTTCTGGCAAGAGCCTCCCTCCCTAGTCAATGACCCG +
Preference number: 2 (lower is better)
Translates to: ALPTYQPPTLPEPFR*AVFWQEPPSLVNDP
Trigger: CGGGTCATTGACTAGGGAGGGAGGCTCTTGCCAGAAGACAGCCAAGCGGAAGGGCTCAGGAAGGGTAGGGGGTTGGTAAGTAGGTAGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp TACAGGAGCTGGAGTGACCCGAATGAGCTTCAGGGTGATGCATTTGGACAAGGTCCCTGGGAGGGAGGCTaGGGGAACGAGGCAGGCACT +
Preference number: 2 (lower is better)
Translates to: YRSWSDPNELQGDAFGQGPWEGG*GNEAGT
Trigger: AGTGCCTGCCTCGTTCCCTCAGCCTCCCTCCCAGGG...ACCTTGTCCAAATGCATCACCCTGAAGCTCATTCGGGTCACTCCAGCTCCTGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp ATCAGCCACTCACTGCTGGACTCTGCCGGCTTGTGGCCAGGTAGGATAGCAGATGATCCGCCAGCTGGATaGGCGCTACACATCTGTGGC +
Preference number: 2 (lower is better)
Translates to: ISHSLLDSAGLWPGRIADDPPAG*ALHICG
Trigger: GCCACAGATGTGTAGCGCTCATCCAGCTGGCGGATC...ATCTGCTATCCTACCTGGCCACAAGCCGGCAGAGTCCAGCAGTGAGTGGCTGAT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp TGTCCCAGCTTCCATGCTGTGGCTCTCTCAGCTACCTCTAACTCCAGCTCCAGAACCCCCTACCCTTCCTaGGCCCTTCCGCTTGGCTGT +
Preference number: 2 (lower is better)
Translates to: CPSFHAVALSATSNSSSRTPYPS*ALPLGC
Trigger: ACAGCCAAGCGGAAGGGCTCAGGAAGGGTAGGGGGT...TCTGGAGCTGGAGTTAGAGGTAGCTGAGAGAGCCACAGCATGGAAGCTGGGACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp AGAGGCCTCGTCTGGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTCTATCTGGCACAGACTaGGAAGGCTGGAGGCTTGGT +
Preference number: 2 (lower is better)
Translates to: RGLVWWLGPSFWPSWNNTLSGTD*EGWRLG
Trigger: ACCAAGCCTCCAGCCTTCCCAGTCTGTGCCAGATAG...AGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp ACTCACTGCTCTTCAATCAGCCACTCACTGCTGGACTCTGCCGGCTaGTGGCCAGGTAGGATAGCAGATGGCAGGCTCTGCCAGTGCTTG +
Preference number: 2 (lower is better)
Translates to: THCSSISHSLLDSAG*WPGRIADGRLCQCL
Trigger: CAAGCACTGGCAGAGCCTGCCATCTGCTATCCTACCTGGCCACAAGCCGGCAGAGTCCAGCAGTGAGTGGCTGATTGAAGAGCAGTGAGT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp TGGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGAAGTGGATCCACAGGTaGAGGCAAGAGCTCCCAAGA +
Preference number: 2 (lower is better)
Translates to: WTDWLGATHRRPQITATGKWIHR*RQELPR
Trigger: TCTTGGGAGCTCTTGCCTTCACCTGTGGATCCACTT...CCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR TCA 90 bp CTGGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTAGCTTTCTGACCTCCTaGCTCCCTTCTAGCCTTCCC +
Preference number: 2 (lower is better)
Translates to: LVAGPQFLAFLEQHCPVTSFLTS*LPSSLP
Trigger: GGGAAGGCTAGAAGGGAGTCAGGAGGTCAGAAAGCT...AGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp CTACCTCTAACTCCAGCTCCAGAGGATCCAACACTTCTTCTGGATCTCACAGGCCGGGGAGGAGCTCACTaGCCCTCCAGTGTCTGGGAC +
Preference number: 2 (lower is better)
Translates to: LPLTPAPEDPTLLLDLTGRGGAH*PSSVWD
Trigger: GTCCCAGACACTGGAGGGTCAGTGAGCTCCTCCCCG...GCCTGTGAGATCCAGAAGAAGTGTTGGATCCTCTGGAGCTGGAGTTAGAGGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp GGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGATCAGTTTCATCAGATaGAGCTTCAGCCGTGGGGCT +
Preference number: 2 (lower is better)
Translates to: GLTGLVLPTEGHRSPLPGISFIR*SFSRGA
Trigger: AGCCCCACGGCTGAAGCTGCATCTGATGAAACTGAT...CCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR TCA 90 bp GCACAGGCTCTGTCTCAACAAAGCCAAGGCCCTTGTGTGAAGGCTGGAGGGGAGAAGTGGATCCACAGGTaGAGGCAAGAGCTCCCAAGA +
Preference number: 2 (lower is better)
Translates to: AQALSQQSQGPCVKAGGEKWIHR*RQELPR
Trigger: TCTTGGGAGCTCTTGCCTTCACCTGTGGATCCACTT...CTCCCCTCCAGCCTTCACACAAGGGCCTTGGCTTTGTTGAGACAGAGCCTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR TCA 90 bp GGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTGTGGAGCCATAGATGAGGGTTaGGGTATGAGCCTGGGTTCT +
Preference number: 2 (lower is better)
Translates to: GWAPVSGLPGTTLSSHCGAIDEG*GMSLGS
Trigger: AGAACCCAGGCTCATACCTCAACCCTCATCTATGGC...TCCACAGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp GGTCCCTTACCGGAGGTAAGAAGGGTCAGGACCAGGAACACAAAGCTGCAAGTCCCTCCTCCTTTGTGGTaGCCCTGTCCCTGTTCCCTT +
Preference number: 2 (lower is better)
Translates to: GPLPEVRRVRTRNTKLQVPPPLW*PCPCSL
Trigger: AAGGGAACAGGGACAGGGCCACCACAAAGGAGGAGG...GACTTGCAGCTTTGTGTTCCTGGTCCTGACCCTTCTTACCTCCGGTAAGGGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp CCCGCACGATCCGCCAGCTGGATGAGCGCTACACATCTGTGGCTTTaGGGTATAAAGACTGTGCGGCTTATTACCAAGCCGCAAGCCCAA +
Preference number: 2 (lower is better)
Translates to: PARSASWMSATHLWL*GIKTVRLITKPQAQ
Trigger: TTGGGCTTGCGGCTTGGTAATAAGCCGCACAGTCTTTATACCCAAAAGCCACAGATGTGTAGCGCTCATCCAGCTGGCGGATCGTGCGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp ACTGTCCAGTCACTGTGGAGACTTTCTACCCGACACTGTGGTGCTTaGAGGGACGGCTGCAAACCATCTTCCGAGTCCTCCTGCAGTCTC +
Preference number: 2 (lower is better)
Translates to: TVQSLWRLSTRHCGA*RDGCKPSSESSCSL
Trigger: GAGACTGCAGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTGGACAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp TTGTGGGGCACCATATGCCACTCTAGGCTGAGCTGTGCTGGACACTaGACTGTGGCAAATCCATCCTTAAGGCTGGATTCCGGGGAGGAG +
Preference number: 2 (lower is better)
Translates to: LWGTICHSRLSCAGH*TVANPSLRLDSGEE
Trigger: CTCCTCCCCGGAATCCAGCCTTAAGGATGGATTTGCCACAGTCAAGTGTCCAGCACAGCTCAGCCTAGAGTGGCATATGGTGCCCCACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp GGTCCCTTACCGGAGGTAAGAAGGGTCAGGACCAGGAACACAAAGCTGCAAGTCAGCTTTCTGACCTCCTaGCTCCCTTCTAGCCTTCCC +
Preference number: 2 (lower is better)
Translates to: GPLPEVRRVRTRNTKLQVSFLTS*LPSSLP
Trigger: GGGAAGGCTAGAAGGGAGTCAGGAGGTCAGAAAGCT...GACTTGCAGCTTTGTGTTCCTGGTCCTGACCCTTCTTACCTCCGGTAAGGGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp CCTACAGGTAACATAACAAGGCCCTGTGCCCATCAGTGGGGTCATGGGGCCTGTGCCATAGATGAGGGTTaGGGTATGAGCCTGGGTTCT +
Preference number: 2 (lower is better)
Translates to: PTGNITRPCAHQWGHGACAIDEG*GMSLGS
Trigger: AGAACCCAGGCTCATACCTCAACCCTCATCTATGGC...ACAGGCCCCATGACCCCACTGATGGGCACAGGGCCTTGTTATGTTACCTGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp GTGTCTGGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTATACCCTAACAGCAAGTaGCAGCACAGGCTCTGTCTC +
Preference number: 2 (lower is better)
Translates to: VSGLTGLVLPTEGHRSPLYPNSK*QHRLCL
Trigger: GAGACAGAGCCTGTGCTGGCACTTGCTGTTAGGGTA...TAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCAGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR GCA 90 bp GATTCCGGGGAGGAGCTCACTGACCCTCCAGTGTCTGGGACAGGACAACAAAAGCACACCCCTGTTCTCTaGCTCAATGCAGCAGATGAC +
Preference number: 2 (lower is better)
Translates to: DSGEELTDPPVSGTGQQKHTPVL*LNAADD
Trigger: GTCATCTGCTGCATTGAGGCAGAGAACAGGGGTGTG...CTTTTGTTGTCCTGTCCCAGACACTGGAGGGTCAGTGAGCTCCTCCCCGGAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp TATGTGTCTGGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGATGCAGCTTCAGCCGTaGGGCTCAGTGATTCTGCTC +
Preference number: 2 (lower is better)
Translates to: YVSGLTGLVLPTEGHRSPMQLQP*GSVILL
Trigger: GAGCAGAATCACTGAGCCCCACGGCTGAAGCTGCAT...CGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCAGACACATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR CCA 90 bp CAGCCAGGTTCTGTTCCTGGCAACTACATGGCACTCCCAGTTCACAACTGTCAGTCTTCCAGCACTCAGTaGGGCTACCTGACCTGGGAG +
Preference number: 2 (lower is better)
Translates to: QPGSVPGNYMALPVHNCQSSSTQ*GYLTWE
Trigger: CTCCCAGGTCAGGTAGCCCCACTGAGTGCTGGAAGA...CTGACAGTTGTGAACTGGGAGTGCCATGTAGTTGCCAGGAACAGAACCTGGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp GGTCCCTTACCGGAGGTAAGAAGGGTCAGGACCAGGAACACAAAGCTGCAAGTCTACCCTAACAGCAAGTaGCAGCACAGGCTCTGTCTC +
Preference number: 2 (lower is better)
Translates to: GPLPEVRRVRTRNTKLQVYPNSK*QHRLCL
Trigger: GAGACAGAGCCTGTGCTGGCACTTGCTGTTAGGGTA...GACTTGCAGCTTTGTGTTCCTGGTCCTGACCCTTCTTACCTCCGGTAAGGGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp GGTCCCTTACCGGAGGTAAGAAGGGTCAGGACCAGGAACACAAAGCTGCAAGTCCACACCCCTGTTCTCTaGCTCAATGCAGCAGATGAC +
Preference number: 2 (lower is better)
Translates to: GPLPEVRRVRTRNTKLQVHTPVL*LNAADD
Trigger: GTCATCTGCTGCATTGAGGCAGAGAACAGGGGTGTG...GACTTGCAGCTTTGTGTTCCTGGTCCTGACCCTTCTTACCTCCGGTAAGGGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp GGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTGTGGAAAGAACCAAGGTAGATaGCATCCACACCCCTGTTCT +
Preference number: 2 (lower is better)
Translates to: GWAPVSGLPGTTLSSHCGKNQGR*HPHPCS
Trigger: AGAACAGGGGTGTGGATGGCATCTACCTTGGTTCTT...TCCACAGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp CTACCTCTAACTCCAGCTCCAGAGGATCCAACACTTCTTCTGGATCTCACAGGCCCTCCTCCTTTGTGGTaGCCCTGTCCCTGTTCCCTT +
Preference number: 2 (lower is better)
Translates to: LPLTPAPEDPTLLLDLTGPPPLW*PCPCSL
Trigger: AAGGGAACAGGGACAGGGCCACCACAAAGGAGGAGG...GCCTGTGAGATCCAGAAGAAGTGTTGGATCCTCTGGAGCTGGAGTTAGAGGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp CTACCTCTAACTCCAGCTCCAGAGGATCCAACACTTCTTCTGGATCTCACAGGCTACCCTCCTCCTTTGTaGTGGCCCTGTCCCTGTTCC +
Preference number: 2 (lower is better)
Translates to: LPLTPAPEDPTLLLDLTGYPPPL*WPCPCS
Trigger: GGAACAGGGACAGGGCCACCACAAAGGAGGAGGGTA...GCCTGTGAGATCCAGAAGAAGTGTTGGATCCTCTGGAGCTGGAGTTAGAGGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp AGAGGCCTCGTCTGGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTACAGGGTACAGAACTTaGGAAGGGCAAAAGTACATC +
Preference number: 2 (lower is better)
Translates to: RGLVWWLGPSFWPSWNNTTGYRT*EGQKYI
Trigger: GATGTACTTTTGCCCTTCCCAAGTTCTGTACCCTGT...AGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp AGGCTTGGTCGCAGGACTGACCATTGTCTGCATGTTGGGATTCCTTaGAGACCGTTGACTCCTTGGAGACCCCACTCAACTCACTGCTCT +
Preference number: 2 (lower is better)
Translates to: RLGRRTDHCLHVGIP*RPLTPWRPHSTHCS
Trigger: AGAGCAGTGAGTTGAGTGGGGTCTCCAAGGAGTCAACGGTCTCAAAGGAATCCCAACATGCAGACAATGGTCAGTCCTGCGACCAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp AGAAGAGAGTCAGGGCTTGGTGCCCATCAACCTCGTTTGTCCCCATaGTCCCATCACTGTGCCCTTTTCTCTAGTTGGCACGAGGAAAGG +
Preference number: 2 (lower is better)
Translates to: RRESGLGAHQPRLSP*SHHCALFSSWHEER
Trigger: CCTTTCCTCGTGCCAACTAGAGAAAAGGGCACAGTGATGGGACAATGGGGACAAACGAGGTTGATGGGCACCAAGCCCTGACTCTCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp AAATATCAACTCTTCCTGCCTAACGAGCTGAGGTTCCCTTTCCTCAGGCTGCAGTCCTGCCTAACGAGCTaGGGTTCCCTTTCCTCAGGC +
Preference number: 2 (lower is better)
Translates to: KYQLFLPNELRFPFLRLQSCLTS*GSLSSG
Trigger: GCCTGAGGAAAGGGAACCTCAGCTCGTTAGGCAGGA...CTGCAGCCTGAGGAAAGGGAACCTCAGCTCGTTAGGCAGGAAGAGTTGATATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR TCA 90 bp TGTCCCAGCTTCCATGCTGTGGCTCTCTCAGCTACCTCTAACTCCAGCTCCAGAGGGAGTACTCACTCCTaGAGATGGAAAGAGCTGACA +
Preference number: 2 (lower is better)
Translates to: CPSFHAVALSATSNSSSRGSTHS*RWKELT
Trigger: TGTCAGCTCTTTCCATCTTCAGGAGTGAGTACTCCC...TCTGGAGCTGGAGTTAGAGGTAGCTGAGAGAGCCACAGCATGGAAGCTGGGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp GTTCTGTTCCTGGCAACTACATGGCACTCCCAGTTCACAACTGTCAGTAACACCGCTTCCTGGAAGGGCTaGTGCCCTGGCAACACTGTT +
Preference number: 2 (lower is better)
Translates to: VLFLATTWHSQFTTVSNTASWKG*CPGNTV
Trigger: AACAGTGTTGCCAGGGCATCAGCCCTTCCAGGAAGC...GGTGTTACTGACAGTTGTGAACTGGGAGTGCCATGTAGTTGCCAGGAACAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp CGAGGCAGGCACTGTGGCCTGAGCTTCAGACCACAATGTCTTAAGTGGATCCACATCAGTTTCATCAGATaGAGCTTCAGCCGTGGGGCT +
Preference number: 2 (lower is better)
Translates to: RGRHCGLSFRPQCLKWIHISFIR*SFSRGA
Trigger: AGCCCCACGGCTGAAGCTGCATCTGATGAAACTGAT...GTGGATCCACTTAAGACATTGTGGTCTGAAGCTCAGGCCACAGTGCCTGCCTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR GCA 90 bp CTACCTCTAACTCCAGCTCCAGAGGATCCAACACTTCTTCTGGATCTCACAGGCTCCCTTTCCTCAGGCTaGAGTAGACCCTCCAGGAAC +
Preference number: 2 (lower is better)
Translates to: LPLTPAPEDPTLLLDLTGSLSSG*SRPSRN
Trigger: GTTCCTGGAGGGTCTACTGCAGCCTGAGGAAAGGGA...GCCTGTGAGATCCAGAAGAAGTGTTGGATCCTCTGGAGCTGGAGTTAGAGGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp TACAGGAGCTGGAGTGACCCGAATGAGCTTCAGGGTGATGCATTTGGACAAGGTATGCAGCTTCAGCCGTaGGGCTCAGTGATTCTGCTC +
Preference number: 2 (lower is better)
Translates to: YRSWSDPNELQGDAFGQGMQLQP*GSVILL
Trigger: GAGCAGAATCACTGAGCCCCACGGCTGAAGCTGCAT...ACCTTGTCCAAATGCATCACCCTGAAGCTCATTCGGGTCACTCCAGCTCCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp TACAGGAGCTGGAGTGACCCGAATGAGCTTCAGGGTGATGCATTTGGACAAGGTCTATCTGGCACAGACTaGGAAGGCTGGAGGCTTGGT +
Preference number: 2 (lower is better)
Translates to: YRSWSDPNELQGDAFGQGLSGTD*EGWRLG
Trigger: ACCAAGCCTCCAGCCTTCCCAGTCTGTGCCAGATAG...ACCTTGTCCAAATGCATCACCCTGAAGCTCATTCGGGTCACTCCAGCTCCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp CGCAGGACTGACCATTGTCTGCATGTTGGGATTCCTTTGAGACCGTaGACTCCTTGGAGACCCCACTCAACTCACTGCTCTTCAATCAGC +
Preference number: 2 (lower is better)
Translates to: RRTDHCLHVGIPLRP*TPWRPHSTHCSSIS
Trigger: GCTGATTGAAGAGCAGTGAGTTGAGTGGGGTCTCCAAGGAGTCAACGGTCTCAAAGGAATCCCAACATGCAGACAATGGTCAGTCCTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp CATGCCAATAAAGAACCAAGCGAAGAGGCAGAAGAGAGTCAGGGCTaGGTGCCCATCAACCTCGTTTGTCCCCATTGTCCCATCACTGTG +
Preference number: 2 (lower is better)
Translates to: HANKEPSEEAEESQG*VPINLVCPHCPITV
Trigger: CACAGTGATGGGACAATGGGGACAAACGAGGTTGATGGGCACCAAGCCCTGACTCTCTTCTGCCTCTTCGCTTGGTTCTTTATTGGCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp GGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTGTGAACCGAAAGCCAATTaGAAAGGTGTTGGATGTAGA +
Preference number: 2 (lower is better)
Translates to: GGWAPVSGLPGTTLSSHCEPKAN*KGVGCR
Trigger: TCTACATCCAACACCTTTTCAATTGGCTTTCGGTTC...ACAGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp ACCAAACCAGACAAAAACTCCAGTTTACCAGCCAGAGGAGCACAGGCCATACTCTCCATGGTGAGTGCCTaGAACGAGGTCCTGATCCCA +
Preference number: 2 (lower is better)
Translates to: TKPDKNSSLPARGAQAILSMVSA*NEVLIP
Trigger: TGGGATCAGGACCTCGTTGCAGGCACTCACCATGGA...GAGTATGGCCTGTGCTCCTCTGGCTGGTAAACTGGAGTTTTTGTCTGGTTTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp AAGGACAGGGTACAGAACTTGGGAAGGGCAAAAGTACATCTGACCCTGATATGGTCTTCCAGCACTCAGTaGGGCTACCTGACCTGGGAG +
Preference number: 2 (lower is better)
Translates to: KDRVQNLGRAKVHLTLIWSSSTQ*GYLTWE
Trigger: CTCCCAGGTCAGGTAGCCCCACTGAGTGCTGGAAGA...CCATATCAGGGTCAGATGTACTTTTGCCCTTCCCAAGTTCTGTACCCTGTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp CAGCCAGGTTCTGTTCCTGGCAACTACATGGCACTCCCAGTTCACAACTGTCAGAGAAGCTGTGAGCTCTaGGTTAGGTGCAGGAGTTCA +
Preference number: 2 (lower is better)
Translates to: QPGSVPGNYMALPVHNCQRSCEL*VRCRSS
Trigger: TGAACTCCTGCACCTAACCCAGAGCTCACAGCTTCT...CTGACAGTTGTGAACTGGGAGTGCCATGTAGTTGCCAGGAACAGAACCTGGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp CAGGAGGATCACTTGAGCCCAAGAGTTTTGCGCCATTCTGGCCTACAGGTAACACCAGCTTCCATGCTGTaGCTCTCTCAGCTACCTCTA +
Preference number: 2 (lower is better)
Translates to: QEDHLSPRVLRHSGLQVTPASML*LSQLPL
Trigger: TAGAGGTAGCTGAGAGAGCCACAGCATGGAAGCTGG...TGTTACCTGTAGGCCAGAATGGCGCAAAACTCTTGGGCTCAAGTGATCCTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp CTACCTCTAACTCCAGCTCCAGAGGATCCAACACTTCTTCTGGATCTCACAGGCGGACTGTGGTTTTTGTaGGGCACCATATGCCACTCT +
Preference number: 2 (lower is better)
Translates to: LPLTPAPEDPTLLLDLTGGLWFL*GTICHS
Trigger: AGAGTGGCATATGGTGCCCCACAAAAACCACAGTCC...GCCTGTGAGATCCAGAAGAAGTGTTGGATCCTCTGGAGCTGGAGTTAGAGGTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp CAGGGTGATGCATTTGGACAAGGTTGCTACAATGCAAAGGCCAGATaGAATGGCAGAGGTATCTTCACCTGGTCAAGAGTCCCAACCAGC +
Preference number: 2 (lower is better)
Translates to: QGDAFGQGCYNAKAR*NGRGIFTWSRVPTS
Trigger: GCTGGTTGGGACTCTTGACCAGGTGAAGATACCTCTGCCATTCAATCTGGCCTTTGCATTGTAGCAACCTTGTCCAAATGCATCACCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp ACCAAACCAGACAAAAACTCCAGTTTACCAGCCAGAGGAGCACAGGCCATACTCGGGAGTACTCACTCCTaGAGATGGAAAGAGCTGACA +
Preference number: 2 (lower is better)
Translates to: TKPDKNSSLPARGAQAILGSTHS*RWKELT
Trigger: TGTCAGCTCTTTCCATCTTCAGGAGTGAGTACTCCC...GAGTATGGCCTGTGCTCCTCTGGCTGGTAAACTGGAGTTTTTGTCTGGTTTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp GTTCTGTTCCTGGCAACTACATGGCACTCCCAGTTCACAACTGTCAGTAACACCCTACTGAGCCATAGATaGGGGTTGAGGTATGAGCCT +
Preference number: 2 (lower is better)
Translates to: VLFLATTWHSQFTTVSNTLLSHR*GLRYEP
Trigger: AGGCTCATACCTCAACCCTCATCTATGGCTCAGTAG...GGTGTTACTGACAGTTGTGAACTGGGAGTGCCATGTAGTTGCCAGGAACAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp GGATCTCACAGGCAAGATCTGACCTGTGTGCCCATGCTCATAGGAGAGGCACATCTGTGCCAGCAATACTaGAGACCTAGAAACAGTTGT +
Preference number: 2 (lower is better)
Translates to: GSHRQDLTCVPMLIGEAHLCQQY*RPRNSC
Trigger: ACAACTGTTTCTAGGTCTTCAGTATTGCTGGCACAG...ATGTGCCTCTCCTATGAGCATGGGCACACAGGTCAGATCTTGCCTGTGAGATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp AAATATCAACTCTTCCTGCCTAACGAGCTGAGGTTCCCTTTCCTCAGGCTGCAGATCAGTTTCATCAGATaGAGCTTCAGCCGTGGGGCT +
Preference number: 2 (lower is better)
Translates to: KYQLFLPNELRFPFLRLQISFIR*SFSRGA
Trigger: AGCCCCACGGCTGAAGCTGCATCTGATGAAACTGAT...CTGCAGCCTGAGGAAAGGGAACCTCAGCTCGTTAGGCAGGAAGAGTTGATATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR GCA 90 bp GCTTTGAGGGACGGCTGCAAACCATCTTCCGAGTCCTCCTGCAGTCTCAGCCTGGTTGGATGTAGACTTTaGGATAAAGGTATCTTTCGA +
Preference number: 2 (lower is better)
Translates to: ALRDGCKPSSESSCSLSLVGCRL*DKGIFR
Trigger: TCGAAAGATACCTTTATCGCAAAGTCTACATCCAAC...CAGGCTGAGACTGCAGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp CCAGGAACACAAAGCTGCAAGTCTCTATGGTCCACCTCTTTATATGACGGTAATTCGGGGTGGCCACATTaGCTTCCTGGAAGGGCTGAT +
Preference number: 2 (lower is better)
Translates to: PGTQSCKSLWSTSLYDGNSGWPH*LPGRAD
Trigger: ATCAGCCCTTCCAGGAAGCCAATGTGGCCACCCCGA...ATTACCGTCATATAAAGAGGTGGACCATAGAGACTTGCAGCTTTGTGTTCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp GGGACAGGACAACAAAAGAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTTGCAGTCTCAGCCTGTaGTCCCTTACCGGAGGTAAG +
Preference number: 2 (lower is better)
Translates to: GTGQQKRPMCCMIIEASSCSLSL*SLTGGK
Trigger: CTTACCTCCGGTAAGGGACCACAGGCTGAGACTGCA...AGACGAGGCCTCTATAATCATACAACACATTGGCCTCTTTTGTTGTCCTGTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp TACAGGAGCTGGAGTGACCCGAATGAGCTTCAGGGTGATGCATTTGGACAAGGTAGTTTCTGGCCTTCCTaGAACAACACTGTCCAGTCA +
Preference number: 2 (lower is better)
Translates to: YRSWSDPNELQGDAFGQGSFWPS*NNTVQS
Trigger: TGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACT...ACCTTGTCCAAATGCATCACCCTGAAGCTCATTCGGGTCACTCCAGCTCCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp ATTAAATATCAACTCTTCCTGCCTAACGAGCTGAGGTTCCCTTTCCTCAGGCTGAAGTGGATCCACAGGTaGAGGCAAGAGCTCCCAAGA +
Preference number: 2 (lower is better)
Translates to: IKYQLFLPNELRFPFLRLKWIHR*RQELPR
Trigger: TCTTGGGAGCTCTTGCCTTCACCTGTGGATCCACTT...CAGCCTGAGGAAAGGGAACCTCAGCTCGTTAGGCAGGAAGAGTTGATATTTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR TCA 90 bp CAGGAGGATCACTTGAGCCCAAGAGTTTTGCGCCATTCTGGCCTACAGGTAACACAATCTGGGCTTTCTTaGGGAGGTAAGAAGACAGAA +
Preference number: 2 (lower is better)
Translates to: QEDHLSPRVLRHSGLQVTQSGLS*GGKKTE
Trigger: TTCTGTCTTCTTACCTCCTCAAGAAAGCCCAGATTG...TGTTACCTGTAGGCCAGAATGGCGCAAAACTCTTGGGCTCAAGTGATCCTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp GGATCTCACAGGCAAGATCTGACCTGTGTGCCCATGCTCATAGGAGAGGCACATCACTTTCCATGGCCCTaGATCCAATTTTACAGGATA +
Preference number: 2 (lower is better)
Translates to: GSHRQDLTCVPMLIGEAHHFPWP*IQFYRI
Trigger: TATCCTGTAAAATTGGATGCAGGGCCATGGAAAGTG...ATGTGCCTCTCCTATGAGCATGGGCACACAGGTCAGATCTTGCCTGTGAGATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp GGGACAGGACAACAAAAGAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTAGAAGTCTCCCTATGTaGCCCTGCTCATCACAGCTC +
Preference number: 2 (lower is better)
Translates to: GTGQQKRPMCCMIIEASSRSLPM*PCSSQL
Trigger: GAGCTGTGATGAGCAGGGCCACATAGGGAGACTTCT...AGACGAGGCCTCTATAATCATACAACACATTGGCCTCTTTTGTTGTCCTGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp TCCCTTACCGGAGGTAAGAAGGGTCAGGACCAGGAACACAAAGCTGCAAGTCTCAGCGCTACACATCTGTaGCTTTTGGGTATAAAGACT +
Preference number: 2 (lower is better)
Translates to: SLTGGKKGQDQEHKAASLSATHL*LLGIKT
Trigger: AGTCTTTATACCCAAAAGCCACAGATGTGTAGCGCT...GAGACTTGCAGCTTTGTGTTCCTGGTCCTGACCCTTCTTACCTCCGGTAAGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp GGATCTCACAGGCAAGATCTGACCTGTGTGCCCATGCTCATAGGAGAGGCACATAGCTGCAAGTCTCTATaGTCCACCTCTTTATATGAC +
Preference number: 2 (lower is better)
Translates to: GSHRQDLTCVPMLIGEAHSCKSL*STSLYD
Trigger: GTCATATAAAGAGGTGGACCATAGAGACTTGCAGCT...ATGTGCCTCTCCTATGAGCATGGGCACACAGGTCAGATCTTGCCTGTGAGATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp CCAGGAACACAAAGCTGCAAGTCTCTATGGTCCACCTCTTTATATGACGGTAATAAGTGGATCCACAGGTaGAGGCAAGAGCTCCCAAGA +
Preference number: 2 (lower is better)
Translates to: PGTQSCKSLWSTSLYDGNKWIHR*RQELPR
Trigger: TCTTGGGAGCTCTTGCCTTCACCTGTGGATCCACTT...ATTACCGTCATATAAAGAGGTGGACCATAGAGACTTGCAGCTTTGTGTTCCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp GGGACAGGACAACAAAAGAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTCTACTGAGCCATAGATaGGGGTTGAGGTATGAGCCT +
Preference number: 2 (lower is better)
Translates to: GTGQQKRPMCCMIIEASSLLSHR*GLRYEP
Trigger: AGGCTCATACCTCAACCCTCATCTATGGCTCAGTAG...AGACGAGGCCTCTATAATCATACAACACATTGGCCTCTTTTGTTGTCCTGTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp CCAGGAACACAAAGCTGCAAGTCTCTATGGTCCACCTCTTTATATGACGGTAATAGAAGTCTCCCTATGTaGCCCTGCTCATCACAGCTC +
Preference number: 2 (lower is better)
Translates to: PGTQSCKSLWSTSLYDGNRSLPM*PCSSQL
Trigger: GAGCTGTGATGAGCAGGGCCACATAGGGAGACTTCT...ATTACCGTCATATAAAGAGGTGGACCATAGAGACTTGCAGCTTTGTGTTCCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp GTTGGGATTTGTCTCCACTATAGCACAGTGATTTCATTGTTGTTATTTCAGGGTGCTTCCTGGAAGGGCTaGTGCCCTGGCAACACTGTT +
Preference number: 2 (lower is better)
Translates to: VGICLHYSTVISLLLFQGASWKG*CPGNTV
Trigger: AACAGTGTTGCCAGGGCATCAGCCCTTCCAGGAAGC...ACCCTGAAATAACAACAATGAAATCACTGTGCTATAGTGGAGACAAATCCCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp CCAGGAACACAAAGCTGCAAGTCTCTATGGTCCACCTCTTTATATGACGGTAATCCCCACTCAACTCACTaGTCTTCAATCAGCCACTCA +
Preference number: 2 (lower is better)
Translates to: PGTQSCKSLWSTSLYDGNPHSTH*SSISHS
Trigger: TGAGTGGCTGATTGAAGAGCAGTGAGTTGAGTGGGG...ATTACCGTCATATAAAGAGGTGGACCATAGAGACTTGCAGCTTTGTGTTCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp AGAGCTTTGACATGCAGAAGTGCAACTCCTAATAACATCTTTGTGTaGCAATCTCTAAACCCCAGTGAAGTCCTCCAGACCCCAGATGGA +
Preference number: 2 (lower is better)
Translates to: RALTCRSATPNNIFV*QSLNPSEVLQTPDG
Trigger: TCCATCTGGGGTCTGGAGGACTTCACTGGGGTTTAGAGATTGCAACACAAAGATGTTATTAGGAGTTGCACTTCTGCATGTCAAAGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR GCA 90 bp CAGGAGGATCACTTGAGCCCAAGAGTTTTGCGCCATTCTGGCCTACAGGTAACAGTTGGATGTAGACTTTaGGATAAAGGTATCTTTCGA +
Preference number: 2 (lower is better)
Translates to: QEDHLSPRVLRHSGLQVTVGCRL*DKGIFR
Trigger: TCGAAAGATACCTTTATCGCAAAGTCTACATCCAAC...TGTTACCTGTAGGCCAGAATGGCGCAAAACTCTTGGGCTCAAGTGATCCTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR TCA 90 bp GTTGGGATTTGTCTCCACTATAGCACAGTGATTTCATTGTTGTTATTTCAGGGTACTATGTGTCTGGACTaGCTGGCTTGGTGCTACCCA +
Preference number: 2 (lower is better)
Translates to: VGICLHYSTVISLLLFQGTMCLD*LAWCYP
Trigger: TGGGTAGCACCAAGCCAGTCAGTCCAGACACATAGT...ACCCTGAAATAACAACAATGAAATCACTGTGCTATAGTGGAGACAAATCCCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp GTTCTGTTCCTGGCAACTACATGGCACTCCCAGTTCACAACTGTCAGTAACACCAATTTTACAGGATACTaGTGCTTAACTATCTGGCAC +
Preference number: 2 (lower is better)
Translates to: VLFLATTWHSQFTTVSNTNFTGY*CLTIWH
Trigger: GTGCCAGATAGTTAAGCACCAGTATCCTGTAAAATT...GGTGTTACTGACAGTTGTGAACTGGGAGTGCCATGTAGTTGCCAGGAACAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CCA 90 bp GTTGGGATTTGTCTCCACTATAGCACAGTGATTTCATTGTTGTTATTTCAGGGTCCAGCTTCCATGCTGTaGCTCTCTCAGCTACCTCTA +
Preference number: 2 (lower is better)
Translates to: VGICLHYSTVISLLLFQGPASML*LSQLPL
Trigger: TAGAGGTAGCTGAGAGAGCCACAGCATGGAAGCTGG...ACCCTGAAATAACAACAATGAAATCACTGTGCTATAGTGGAGACAAATCCCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp CCTGATGTATTCTTTTCCAGGAACCGAAAGCCAATTGAAAAGGTGTaGGATGTAGACTTTGCGATAAAGGTATCTTTCGATCACCCTCTC +
Preference number: 2 (lower is better)
Translates to: PDVFFSRNRKPIEKV*DVDFAIKVSFDHPL
Trigger: GAGAGGGTGATCGAAAGATACCTTTATCGCAAAGTCTACATCCAACACCTTTTCAATTGGCTTTCGGTTCCTGGAAAAGAATACATCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 90 bp TCAAATAAGGTTGGGATTTGTCTCCACTATAGCACAGTGATTTCATaGTTGTTATTTCAGGGTTTAAGGACCAGGGTCCAAGTCACAAGA +
Preference number: 2 (lower is better)
Translates to: SNKVGICLHYSTVIS*LLFQGLRTRVQVTR
Trigger: TCTTGTGACTTGGACCCTGGTCCTTAAACCCTGAAATAACAACAATGAAATCACTGTGCTATAGTGGAGACAAATCCCAACCTTATTTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp CTCTGCAGGCTGCCCAGAAGTCTCCCTATGTGGCCCTaGTCATCACAGCTCGGGGTGGCCACATTGGCTTCC +
Preference number: 3 (lower is better)
Translates to: LCRLPRSLPMWP*SSQLGVATLAS
Trigger: GGAAGCCAATGTGGCCACCCCGAGCTGTGATGAGCAGGGCCACATAGGGAGACTTCTGGGCAGCCTGCAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GTCTCCCTATGTGGCCCTGCTCATCACAGCTCGGGGTaGCCACATTGGCTTCCTGGAAGGGCTGATGCCCTG +
Preference number: 3 (lower is better)
Translates to: VSLCGPAHHSSG*PHWLPGRADAL
Trigger: CAGGGCATCAGCCCTTCCAGGAAGCCAATGTGGCCACCCCGAGCTGTGATGAGCAGGGCCACATAGGGAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp GGACAGGCTGAGTGTGGGAGTCAGTACCTCGACAACTaGTGCAGTCCTTCCTTCAGGGTCAGTCCCGGAGGG +
Preference number: 3 (lower is better)
Translates to: GQAECGSQYLDN*CSPSFRVSPGG
Trigger: CCCTCCGGGACTGACCCTGAAGGAAGGACTGCAGCAGTTGTCGAGGTACTGACTCCCACACTCAGCCTGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp CTCCAGACCCCAGATGGAGGCCAGTTCCTTCTAGACTaGGCCGAGCAGCCTAACAGCACTCACTACCCGGAC +
Preference number: 3 (lower is better)
Translates to: LQTPDGGQFLLD*AEQPNSTHYPD
Trigger: GTCCGGGTAGTGAGTGCTGTTAGGCTGCTCGGCCCAGTCTAGAAGGAACTGGCCTCCATCTGGGGTCTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp ATGCAGCTTCAGCCGTGGGGCTCAGTGATTCTGCTCTaGAAGGCGGCACTGTCCAAGGCTGATTCCCATCGC +
Preference number: 3 (lower is better)
Translates to: MQLQPWGSVILL*KAALSKADSHR
Trigger: GCGATGGGAATCAGCCTTGGACAGTGCCGCCTTCCAGAGCAGAATCACTGAGCCCCACGGCTGAAGCTGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR CCA 72 bp TCAATCAGCCACTCACTGCTGGACTCTGCCGGCTTGTaGCCAGGTAGGATAGCAGATGGCAGGCTCTGCCAG +
Preference number: 3 (lower is better)
Translates to: SISHSLLDSAGL*PGRIADGRLCQ
Trigger: CTGGCAGAGCCTGCCATCTGCTATCCTACCTGGCCACAAGCCGGCAGAGTCCAGCAGTGAGTGGCTGATTGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp CAGTCACTGTGGAGACTTTCTACCCGACACTGTGGTGCTTTGAGGGACGGCTGCAAGGGGAGGGTCTTCTaGGGAGGGCTTGGCTCACAC +
Preference number: 3 (lower is better)
Translates to: QSLWRLSTRHCGALRDGCKGRVF*GGLGSH
Trigger: GTGTGAGCCAAGCCCTCCCAAGAAGACCCTCCCCTT...GCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 72 bp GGCTGTCTTCTGGCAAGAGCCTCCCTCCCTAGTCAATaGCCCGCTTTGCCCTCAGACTCACAGGGCTTACTG +
Preference number: 3 (lower is better)
Translates to: GCLLARASLPSQ*PALPSDSQGLL
Trigger: CAGTAAGCCCTGTGAGTCTGAGGGCAAAGCGGGTCATTGACTAGGGAGGGAGGCTCTTGCCAGAAGACAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 72 bp TTAATAACCGAGGATGCCGAGGGGAAGAGCTGCTGGTaGGTACCCTCCTCCTTTGTGGTGGCCCTGTCCCTG +
Preference number: 3 (lower is better)
Translates to: LITEDAEGKSCW*VPSSFVVALSL
Trigger: CAGGGACAGGGCCACCACAAAGGAGGAGGGTACTCACCAGCAGCTCTTCCCCTCGGCATCCTCGGTTATTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp CAGATGACCCCTTCTCCCCAGTCCATGGTGAGTGCCTaGAACGAGGTCCTGATCCCACAGCTACTGAGCCAT +
Preference number: 3 (lower is better)
Translates to: QMTPSPQSMVSA*NEVLIPQLLSH
Trigger: ATGGCTCAGTAGCTGTGGGATCAGGACCTCGTTGCAGGCACTCACCATGGACTGGGGAGAAGGGGTCATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp TTGAGGGACGGCTGCAAACCATCTTCCGAGTCCTCCTaGAGTCTCAGCCTGTGGTCCCTTACCGGAGGTAAG +
Preference number: 3 (lower is better)
Translates to: LRDGCKPSSESS*SLSLWSLTGGK
Trigger: CTTACCTCCGGTAAGGGACCACAGGCTGAGACTGCAGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp GGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTGTATTCCTTTGAGACCGTaGACTCCTTGGAGACCCCAC +
Preference number: 3 (lower is better)
Translates to: GGWAPVSGLPGTTLSSHCIPLRP*TPWRPH
Trigger: GTGGGGTCTCCAAGGAGTCAACGGTCTCAAAGGAAT...ACAGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 72 bp AGTTTCATCAGATGCAGCTTCAGCCGTGGGGCTCAGTaGTTCTGCTCTGGAAGGCGGCACTGTCCAAGGCTG +
Preference number: 3 (lower is better)
Translates to: SFIRCSFSRGAQ*FCSGRRHCPRL
Trigger: CAGCCTTGGACAGTGCCGCCTTCCAGAGCAGAATCACTGAGCCCCACGGCTGAAGCTGCATCTGATGAAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR TCA 72 bp GGTATGAGCCTGGGTTCTCATTCCCGGACAGCTTTCTaGCCTCCTGACTCCCTTCTAGCCTTCCCTCTGCAG +
Preference number: 3 (lower is better)
Translates to: GMSLGSHSRTAF*PPDSLLAFPLQ
Trigger: CTGCAGAGGGAAGGCTAGAAGGGAGTCAGGAGGTCAGAAAGCTGTCCGGGAATGAGAACCCAGGCTCATACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp GGCTTGTGGCCAGGTAGGATAGCAGATGGCAGGCTCTaGCAGTGCTTGGGTCCATTCCAATCTGGGCTTTCT +
Preference number: 3 (lower is better)
Translates to: GLWPGRIADGRL*QCLGPFQSGLS
Trigger: AGAAAGCCCAGATTGGAATGGACCCAAGCACTGGCAGAGCCTGCCATCTGCTATCCTACCTGGCCACAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp TGGCAAGAGCCTCCCTCCCTAGTCAATGACCCGCTTTaGCCTCAGACTCACAGGGCTTACTGTGCCAGCAAT +
Preference number: 3 (lower is better)
Translates to: WQEPPSLVNDPL*PQTHRAYCASN
Trigger: ATTGCTGGCACAGTAAGCCCTGTGAGTCTGAGGGCAAAGCGGGTCATTGACTAGGGAGGGAGGCTCTTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp CTTTCTACCCGACACTGTGGTGCTTTGAGGGACGGCTaGAAACCATCTTCCGAGTCCTCCTGCAGTCTCAGC +
Preference number: 3 (lower is better)
Translates to: LSTRHCGALRDG*KPSSESSCSLS
Trigger: GCTGAGACTGCAGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp AAACCATCTTCCGAGTCCTCCTGCAGTCTCAGCCTGTaGTCCCTTACCGGAGGTAAGAAGGGTCAGGACCAG +
Preference number: 3 (lower is better)
Translates to: KPSSESSCSLSL*SLTGGKKGQDQ
Trigger: CTGGTCCTGACCCTTCTTACCTCCGGTAAGGGACCACAGGCTGAGACTGCAGGAGGACTCGGAAGATGGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp CTGGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTAATGTCTCCAGGCTCTaGGGCATCTTCACATGCTTC +
Preference number: 3 (lower is better)
Translates to: LVAGPQFLAFLEQHCPVTNVSRL*GIFTCF
Trigger: GAAGCATGTGAAGATGCCCAAGAGCCTGGAGACATT...AGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp CGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCCTAACAGCAAGTGCCAGCACAATGTCTCCAGGCTCTaGGGCATCTTCACATGCTTC +
Preference number: 3 (lower is better)
Translates to: RYRGPLCASSYPNSKCQHNVSRL*GIFTCF
Trigger: GAAGCATGTGAAGATGCCCAAGAGCCTGGAGACATT...GTGCTGGCACTTGCTGTTAGGGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR CAA 90 bp AAGAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTGGTGGCTGGGCCCCACGACACTGTGGTGCTTaGAGGGACGGCTGCAAACCA +
Preference number: 3 (lower is better)
Translates to: KRPMCCMIIEASSGGWAPRHCGA*RDGCKP
Trigger: TGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCG...TGGGGCCCAGCCACCAGACGAGGCCTCTATAATCATACAACACATTGGCCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 72 bp CCCAGAGTGATCGAGAGGCCACCGCCAAGTGTGAGCTaGGGGACAAGCAGTACCCATCAGTTTCATCAGATG +
Preference number: 3 (lower is better)
Translates to: PRVIERPPPSVS*GTSSTHQFHQM
Trigger: CATCTGATGAAACTGATGGGTACTGCTTGTCCCTCAGCTCACACTTGGCGGTGGCCTCTCGATCACTCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR TCA 72 bp CACTGTGGAGACTTTCTACCCGACACTGTGGTGCTTTaGGGGACGGCTGCAAACCATCTTCCGAGTCCTCCT +
Preference number: 3 (lower is better)
Translates to: HCGDFLPDTVVL*GTAANHLPSPP
Trigger: AGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp AGACCGTTGACTCCTTGGAGACCCCACTCAACTCACTaGTCTTCAATCAGCCACTCACTGCTGGACTCTGCC +
Preference number: 3 (lower is better)
Translates to: RPLTPWRPHSTH*SSISHSLLDSA
Trigger: GGCAGAGTCCAGCAGTGAGTGGCTGATTGAAGAGCAGTGAGTTGAGTGGGGTCTCCAAGGAGTCAACGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp CCAGTCACTGTGGAGACTTTCTACCCGACACTGTGGTaGTTTGAGGGACGGCTGCAAACCATCTTCCGAGTC +
Preference number: 3 (lower is better)
Translates to: PVTVETFYPTLW*FEGRLQTIFRV
Trigger: GACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp AGACCCTCCAGGAACTCACTATGTGTCTGGACTGACTaGCTTGGTGCTACCCACAGAAGGCCACAGATCACC +
Preference number: 3 (lower is better)
Translates to: RPSRNSLCVWTD*LGATHRRPQIT
Trigger: GGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCAGACACATAGTGAGTTCCTGGAGGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR CCA 72 bp GAGCCATCTTCCAGCACTCAGTGGGGCTACCTGACCTaGGAGTACTCACTCCTGAAGATGGAAAGAGCTGAC +
Preference number: 3 (lower is better)
Translates to: EPSSSTQWGYLT*EYSLLKMERAD
Trigger: GTCAGCTCTTTCCATCTTCAGGAGTGAGTACTCCCAGGTCAGGTAGCCCCACTGAGTGCTGGAAGATGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp TACATCAGTATGCCCGAGCCATCTTCCAGCACTCAGTaGGGCTACCTGACCTGGGAGTACTCACTCCTGAAG +
Preference number: 3 (lower is better)
Translates to: YISMPEPSSSTQ*GYLTWEYSLLK
Trigger: CTTCAGGAGTGAGTACTCCCAGGTCAGGTAGCCCCACTGAGTGCTGGAAGATGGCTCGGGCATACTGATGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GAAGACTATCAAGGGGAGGGTCTTCTTGGGAGGGCTTaGCTCACACTCCTATCTTGCCCCAGGGCTGTTGTA +
Preference number: 3 (lower is better)
Translates to: EDYQGEGLLGRA*LTLLSCPRAVV
Trigger: TACAACAGCCCTGGGGCAAGATAGGAGTGTGAGCCAAGCCCTCCCAAGAAGACCCTCCCCTTGATAGTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTaGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAAC +
Preference number: 3 (lower is better)
Translates to: EANVLYDYRGLV*WLGPSFWPSWN
Trigger: GTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCTATAATCATACAACACATTGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp AGTCCCGGAGGGGACACTTTAGGACTGTGGTTTTTGTaGGGCACCATATGCCACTCTAGGCTGAGCTGTGCT +
Preference number: 3 (lower is better)
Translates to: SPGGDTLGLWFL*GTICHSRLSCA
Trigger: AGCACAGCTCAGCCTAGAGTGGCATATGGTGCCCCACAAAAACCACAGTCCTAAAGTGTCCCCTCCGGGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GTCCCTGCAGATCAGTTTGTCCCAGCTTCCATGCTGTaGCTCTCTCAGCTACCTCTAACTCCAGCTCCAGAG +
Preference number: 3 (lower is better)
Translates to: VPADQFVPASML*LSQLPLTPAPE
Trigger: CTCTGGAGCTGGAGTTAGAGGTAGCTGAGAGAGCCACAGCATGGAAGCTGGGACAAACTGATCTGCAGGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp GGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTGTCTTGCCCCAGGGCTGTaGTATTTAATAACCGAGGAT +
Preference number: 3 (lower is better)
Translates to: GGWAPVSGLPGTTLSSHCLAPGL*YLITED
Trigger: ATCCTCGGTTATTAAATACAACAGCCCTGGGGCAAG...ACAGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp TGTCCCAGCTTCCATGCTGTGGCTCTCTCAGCTACCTCTAACTCCAGCTCCAGAAGCTGTGCTGGACACTaGACTGTGGCAAATCCATCC +
Preference number: 3 (lower is better)
Translates to: CPSFHAVALSATSNSSSRSCAGH*TVANPS
Trigger: GGATGGATTTGCCACAGTCAAGTGTCCAGCACAGCT...TCTGGAGCTGGAGTTAGAGGTAGCTGAGAGAGCCACAGCATGGAAGCTGGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 72 bp AACGAGGTCCTGATCCCACAGCTACTGAGCCATAGATaGGGGTTGAGGTATGAGCCTGGGTTCTCATTCCCG +
Preference number: 3 (lower is better)
Translates to: NEVLIPQLLSHR*GLRYEPGFSFP
Trigger: CGGGAATGAGAACCCAGGCTCATACCTCAACCCTCATCTATGGCTCAGTAGCTGTGGGATCAGGACCTCGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp GCAACACTGTTACATGAACCGCGTACTACATCAGTATaGCCGAGCCATCTTCCAGCACTCAGTGGGGCTACC +
Preference number: 3 (lower is better)
Translates to: ATLLHEPRTTSV*PSHLPALSGAT
Trigger: GGTAGCCCCACTGAGTGCTGGAAGATGGCTCGGGCATACTGATGTAGTACGCGGTTCATGTAACAGTGTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp AACCAAGCGAAGAGGCAGAAGAGAGTCAGGGCTTGGTaGCCATCAACCTCGTTTGTCCCCATTGTCCCATCA +
Preference number: 3 (lower is better)
Translates to: NQAKRQKRVRAW*PSTSFVPIVPS
Trigger: TGATGGGACAATGGGGACAAACGAGGTTGATGGGCACCAAGCCCTGACTCTCTTCTGCCTCTTCGCTTGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp TGTCCAGTCACTGTGGAGACTTTCTACCCGACACTGTaGTGCTTTGAGGGACGGCTGCAAACCATCTTCCGA +
Preference number: 3 (lower is better)
Translates to: CPVTVETFYPTL*CFEGRLQTIFR
Trigger: TCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GCCAATGTGTTGTATGATTATAGAGGCCTCGTCTGGTaGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAAC +
Preference number: 3 (lower is better)
Translates to: ANVLYDYRGLVW*LGPSFWPSWNN
Trigger: GTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCTATAATCATACAACACATTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp AAGAACCAAGCGAAGAGGCAGAAGAGAGTCAGGGCTTaGTGCCCATCAACCTCGTTTGTCCCCATTGTCCCA +
Preference number: 3 (lower is better)
Translates to: KNQAKRQKRVRA*CPSTSFVPIVP
Trigger: TGGGACAATGGGGACAAACGAGGTTGATGGGCACCAAGCCCTGACTCTCTTCTGCCTCTTCGCTTGGTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp CTTACGGGCAGCCAGGTTCTGTTCCTGGCAACTACATaGCACTCCCAGTTCACAACTGTCAGTAACACCCTC +
Preference number: 3 (lower is better)
Translates to: LTGSQVLFLATT*HSQFTTVSNTL
Trigger: GAGGGTGTTACTGACAGTTGTGAACTGGGAGTGCCATGTAGTTGCCAGGAACAGAACCTGGCTGCCCGTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp TTATTACCAAGCCGCAAGCCCAAGAACCAAGGTAGATaGCATCCACACCCCTGTTCTCTGCCTCAATGCAGC +
Preference number: 3 (lower is better)
Translates to: LLPSRKPKNQGR*HPHPCSLPQCS
Trigger: GCTGCATTGAGGCAGAGAACAGGGGTGTGGATGGCATCTACCTTGGTTCTTGGGCTTGCGGCTTGGTAATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp GGTCTTCTTGGGAGGGCTTGGCTCACACTCCTATCTTaGCCCAGGGCTGTTGTATTTAATAACCGAGGATGC +
Preference number: 3 (lower is better)
Translates to: GLLGRAWLTLLS*PRAVVFNNRGC
Trigger: GCATCCTCGGTTATTAAATACAACAGCCCTGGGGCAAGATAGGAGTGTGAGCCAAGCCCTCCCAAGAAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GCACGATCCGCCAGCTGGATGAGCGCTACACATCTGTaGCTTTTGGGTATAAAGACTGTGCGGCTTATTACC +
Preference number: 3 (lower is better)
Translates to: ARSASWMSATHL*LLGIKTVRLIT
Trigger: GGTAATAAGCCGCACAGTCTTTATACCCAAAAGCCACAGATGTGTAGCGCTCATCCAGCTGGCGGATCGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp TTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTGTaGAGACTTTCTACCCGACACTGTGGTGCTTTGAGG +
Preference number: 3 (lower is better)
Translates to: FWPSWNNTVQSL*RLSTRHCGALR
Trigger: CCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp ATGTGTTGTATGATTATAGAGGCCTCGTCTGGTGGCTaGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTG +
Preference number: 3 (lower is better)
Translates to: MCCMIIEASSGG*APVSGLPGTTL
Trigger: CAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCTATAATCATACAACACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GTGCTTGAATGCTTACGGGCAGCCAGGTTCTGTTCCTaGCAACTACATGGCACTCCCAGTTCACAACTGTCA +
Preference number: 3 (lower is better)
Translates to: VLECLRAARFCS*QLHGTPSSQLS
Trigger: TGACAGTTGTGAACTGGGAGTGCCATGTAGTTGCCAGGAACAGAACCTGGCTGCCCGTAAGCATTCAAGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GGAGGATCACTTGAGCCCAAGAGTTTTGCGCCATTCTaGCCTACAGGTAACATAACAAGGCCCTGTGCCCAT +
Preference number: 3 (lower is better)
Translates to: GGSLEPKSFAPF*PTGNITRPCAH
Trigger: ATGGGCACAGGGCCTTGTTATGTTACCTGTAGGCCAGAATGGCGCAAAACTCTTGGGCTCAAGTGATCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp CTTTGTGCCTCTTCCTACCCTAACAGCAAGTGCCAGCACAGGCTCTGTCTCAACAATGTCTCCAGGCTCTaGGGCATCTTCACATGCTTC +
Preference number: 3 (lower is better)
Translates to: LCASSYPNSKCQHRLCLNNVSRL*GIFTCF
Trigger: GAAGCATGTGAAGATGCCCAAGAGCCTGGAGACATT...GTTGAGACAGAGCCTGTGCTGGCACTTGCTGTTAGGGTAGGAAGAGGCACAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR CAA 90 bp TACAGGAGCTGGAGTGACCCGAATGAGCTTCAGGGTGATGCATTTGGACAAGGTCTGTGGGCATCTCTTTaGGAGGGTAATAGTTGCCTG +
Preference number: 3 (lower is better)
Translates to: YRSWSDPNELQGDAFGQGLWASL*EGNSCL
Trigger: CAGGCAACTATTACCCTCCAAAAGAGATGCCCACAG...ACCTTGTCCAAATGCATCACCCTGAAGCTCATTCGGGTCACTCCAGCTCCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp CAGCCAGGTTCTGTTCCTGGCAACTACATGGCACTCCCAGTTCACAACTGTCAGTCAGAGGGTAGAGCTTaGACATGCAGAAGTGCAACT +
Preference number: 3 (lower is better)
Translates to: QPGSVPGNYMALPVHNCQSEGRA*TCRSAT
Trigger: AGTTGCACTTCTGCATGTCAAAGCTCTACCCTCTGA...CTGACAGTTGTGAACTGGGAGTGCCATGTAGTTGCCAGGAACAGAACCTGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 72 bp AGCTTCAGACCACAATGTCTTAAGTGGATCCACAGGTaGAGGCAAGAGCTCCCAAGACCCAGAGTGATCGAG +
Preference number: 3 (lower is better)
Translates to: SFRPQCLKWIHR*RQELPRPRVIE
Trigger: CTCGATCACTCTGGGTCTTGGGAGCTCTTGCCTTCACCTGTGGATCCACTTAAGACATTGTGGTCTGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR TCA 72 bp CAAGGCTCCAACCATCCAGGCCAGATGTCTCAGCCCTaGAGAGCATATACTTCTGTCCCTGCAGATCAGTTT +
Preference number: 3 (lower is better)
Translates to: QGSNHPGQMSQP*RAYTSVPADQF
Trigger: AAACTGATCTGCAGGGACAGAAGTATATGCTCTTCAGGGCTGAGACATCTGGCCTGGATGGTTGGAGCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp GACACTTTAGGACTGTGGTTTTTGTGGGGCACCATATaGCACTCTAGGCTGAGCTGTGCTGGACACTTGACT +
Preference number: 3 (lower is better)
Translates to: DTLGLWFLWGTI*HSRLSCAGHLT
Trigger: AGTCAAGTGTCCAGCACAGCTCAGCCTAGAGTGGCATATGGTGCCCCACAAAAACCACAGTCCTAAAGTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp GATGTCTCAGCCCTGAAGAGCATATACTTCTGTCCCTaGAGATCAGTTTGTCCCAGCTTCCATGCTGTGGCT +
Preference number: 3 (lower is better)
Translates to: DVSALKSIYFCP*RSVCPSFHAVA
Trigger: AGCCACAGCATGGAAGCTGGGACAAACTGATCTGCAGGGACAGAAGTATATGCTCTTCAGGGCTGAGACATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp AGCCTAAGAACTGGGGCTCCACAAGAGAATATGAGGTaGCCCTGTAAAAGAAGCCCTTCAGCACTGAGCACA +
Preference number: 3 (lower is better)
Translates to: SLRTGAPQENMR*PCKRSPSALST
Trigger: TGTGCTCAGTGCTGAAGGGCTTCTTTTACAGGGGCACCTCATATTCTCTTGTGGAGCCCCAGTTCTTAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp CTGCATGTTGGGATTCCTTTGAGACCGTTGACTCCTTaGAGACCCCACTCAACTCACTGCTCTTCAATCAGC +
Preference number: 3 (lower is better)
Translates to: LHVGIPLRPLTP*RPHSTHCSSIS
Trigger: GCTGATTGAAGAGCAGTGAGTTGAGTGGGGTCTCCAAGGAGTCAACGGTCTCAAAGGAATCCCAACATGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GCATCCAATTTTACAGGATACTGGTGCTTAACTATCTaGCACAGACTGGGAAGGCTGGAGGCTTGGTCGCAG +
Preference number: 3 (lower is better)
Translates to: ASNFTGYWCLTI*HRLGRLEAWSQ
Trigger: CTGCGACCAAGCCTCCAGCCTTCCCAGTCTGTGCCAGATAGTTAAGCACCAGTATCCTGTAAAATTGGATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp CAGGAGGATCACTTGAGCCCAAGAGTTTTGCGCCATTCTGGCCTACAGGTAACAGACAGGGTACAGAACTaGGGAAGGGCAAAAGTACAT +
Preference number: 3 (lower is better)
Translates to: QEDHLSPRVLRHSGLQVTDRVQN*GRAKVH
Trigger: ATGTACTTTTGCCCTTCCCAAGTTCTGTACCCTGTC...TGTTACCTGTAGGCCAGAATGGCGCAAAACTCTTGGGCTCAAGTGATCCTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp GGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTGTGGAAATAACATCTTTGTGTaGCAATCTCTAAACCCCAGT +
Preference number: 3 (lower is better)
Translates to: GWAPVSGLPGTTLSSHCGNNIFV*QSLNPS
Trigger: ACTGGGGTTTAGAGATTGCAACACAAAGATGTTATT...TCCACAGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp TTCCATGGCCCTGCATCCAATTTTACAGGATACTGGTaGTTAACTATCTGGCACAGACTGGGAAGGCTGGAG +
Preference number: 3 (lower is better)
Translates to: FHGPASNFTGYW*LTIWHRLGRLE
Trigger: CTCCAGCCTTCCCAGTCTGTGCCAGATAGTTAAGCACCAGTATCCTGTAAAATTGGATGCAGGGCCATGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp TCCCCATTGTCCCATCACTGTGCCCTTTTCTCTAGTTaGCACGAGGAAAGGAAATACTTGTTCACGTTGGGG +
Preference number: 3 (lower is better)
Translates to: SPLSHHCALFSS*HEERKYLFTLG
Trigger: CCCCAACGTGAACAAGTATTTCCTTTCCTCGTGCCAACTAGAGAAAAGGGCACAGTGATGGGACAATGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp GGGACAGGACAACAAAAGAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTATTCCTTTGAGACCGTaGACTCCTTGGAGACCCCAC +
Preference number: 3 (lower is better)
Translates to: GTGQQKRPMCCMIIEASSIPLRP*TPWRPH
Trigger: GTGGGGTCTCCAAGGAGTCAACGGTCTCAAAGGAAT...AGACGAGGCCTCTATAATCATACAACACATTGGCCTCTTTTGTTGTCCTGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp GATTCCGGGGAGGAGCTCACTGACCCTCCAGTGTCTGGGACAGGACAACAAAAGAATAGTTGCCTGGGTTaGTTCATCTTGTCTTTTTCT +
Preference number: 3 (lower is better)
Translates to: DSGEELTDPPVSGTGQQKNSCLG*FILSFS
Trigger: AGAAAAAGACAAGATGAACAAACCCAGGCAACTATT...CTTTTGTTGTCCTGTCCCAGACACTGGAGGGTCAGTGAGCTCCTCCCCGGAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp CAGTCACTGTGGAGACTTTCTACCCGACACTGTGGTGCTTTGAGGGACGGCTGCAATAGTTGCCTGGGTTaGTTCATCTTGTCTTTTTCT +
Preference number: 3 (lower is better)
Translates to: QSLWRLSTRHCGALRDGCNSCLG*FILSFS
Trigger: AGAAAAAGACAAGATGAACAAACCCAGGCAACTATT...GCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp TCTTCTGTCCCAGTGTTCCCATGCCAACACTTTCCATaGCCCTGCATCCAATTTTACAGGATACTGGTGCTT +
Preference number: 3 (lower is better)
Translates to: SSVPVFPCQHFP*PCIQFYRILVL
Trigger: AAGCACCAGTATCCTGTAAAATTGGATGCAGGGCCATGGAAAGTGTTGGCATGGGAACACTGGGACAGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GGGTCAGGACCAGGAACACAAAGCTGCAAGTCTCTATaGTCCACCTCTTTATATGACGGTAATCTTTGTCCC +
Preference number: 3 (lower is better)
Translates to: GSGPGTQSCKSL*STSLYDGNLCP
Trigger: GGGACAAAGATTACCGTCATATAAAGAGGTGGACCATAGAGACTTGCAGCTTTGTGTTCCTGGTCCTGACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp TGGACAAGGTTGCTACAATGCAAAGGCCAGATTGAATaGCAGAGGTATCTTCACCTGGTCAAGAGTCCCAAC +
Preference number: 3 (lower is better)
Translates to: WTRLLQCKGQIE*QRYLHLVKSPN
Trigger: GTTGGGACTCTTGACCAGGTGAAGATACCTCTGCCATTCAATCTGGCCTTTGCATTGTAGCAACCTTGTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GGGTTTAAGGACCAGGGTCCAAGTCACAAGATAAACTaGGCCTTGTTAGTGTATCATTTGGCTAGCCCCTTC +
Preference number: 3 (lower is better)
Translates to: GFKDQGPSHKIN*ALLVYHLASPF
Trigger: GAAGGGGCTAGCCAAATGATACACTAACAAGGCCCAGTTTATCTTGTGACTTGGACCCTGGTCCTTAAACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp AAGAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTGGTGGCTGGGCCCCAAATAACATCTTTGTGTaGCAATCTCTAAACCCCAGT +
Preference number: 3 (lower is better)
Translates to: KRPMCCMIIEASSGGWAPNNIFV*QSLNPS
Trigger: ACTGGGGTTTAGAGATTGCAACACAAAGATGTTATT...TGGGGCCCAGCCACCAGACGAGGCCTCTATAATCATACAACACATTGGCCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 72 bp CCCTCAGACTCACAGGGCTTACTGTGCCAGCAATACTaGAGACCTAGAAACAGTTGTGAAGCACATAAAACG +
Preference number: 3 (lower is better)
Translates to: PSDSQGLLCQQY*RPRNSCEAHKT
Trigger: CGTTTTATGTGCTTCACAACTGTTTCTAGGTCTTCAGTATTGCTGGCACAGTAAGCCCTGTGAGTCTGAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 72 bp CATTTGGACAAGGTTGCTACAATGCAAAGGCCAGATTaGATGGCAGAGGTATCTTCACCTGGTCAAGAGTCC +
Preference number: 3 (lower is better)
Translates to: HLDKVATMQRPD*MAEVSSPGQES
Trigger: GGACTCTTGACCAGGTGAAGATACCTCTGCCATTCAATCTGGCCTTTGCATTGTAGCAACCTTGTCCAAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR TCA 72 bp GTCATGGGGCCTGTTTCTAAGACAGCCACTTGTAGATaGAGGTCATGTAAATTGGGAGTGAAGAGGTGCTTG +
Preference number: 3 (lower is better)
Translates to: VMGPVSKTATCR*RSCKLGVKRCL
Trigger: CAAGCACCTCTTCACTCCCAATTTACATGACCTTCATCTACAAGTGGCTGTCTTAGAAACAGGCCCCATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp GTTTCTGTAGGAAGGATGGCAATGTCTCCAGGCTCTTaGGCATCTTCACATGCTTCTAGAAAAGGAAGAGCT +
Preference number: 3 (lower is better)
Translates to: VSVGRMAMSPGS*ASSHASRKGRA
Trigger: AGCTCTTCCTTTTCTAGAAGCATGTGAAGATGCCCAAGAGCCTGGAGACATTGCCATCCTTCCTACAGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR-3UTR CAA 90 bp GTTGGGATTTGTCTCCACTATAGCACAGTGATTTCATTGTTGTTATTTCAGGGTCCTCGTTTGTCCCCATaGTCCCATCACTGTGCCCTT +
Preference number: 3 (lower is better)
Translates to: VGICLHYSTVISLLLFQGPRLSP*SHHCAL
Trigger: AAGGGCACAGTGATGGGACAATGGGGACAAACGAGG...ACCCTGAAATAACAACAATGAAATCACTGTGCTATAGTGGAGACAAATCCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CCA 72 bp ACTGAGCACACATACATTAGAGAAATATGTAGACACTaGGGTGCTAAAATCAGTGGGGTACAGGAGCTGGAG +
Preference number: 3 (lower is better)
Translates to: TEHTYIREICRH*GAKISGVQELE
Trigger: CTCCAGCTCCTGTACCCCACTGATTTTAGCACCCCAGTGTCTACATATTTCTCTAATGTATGTGTGCTCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp AATCTAGCTGGTCACCTTGCTGTTTTATATGAAGCGTaGCTTCAAGTGATACCCATGACAAACAGCAGAGCT +
Preference number: 3 (lower is better)
Translates to: NLAGHLAVLYEA*LQVIPMTNSRA
Trigger: AGCTCTGCTGTTTGTCATGGGTATCACTTGAAGGCACGCTTCATATAAAACAGCAAGGTGACCAGCTAGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp AAGCATGAGCCTATATGTATGGAAAGGCTCTCTACTTaGACCCACACAAGGTTAATAGTCCAATCTAGCTGG +
Preference number: 3 (lower is better)
Translates to: KHEPICMERLST*THTRLIVQSSW
Trigger: CCAGCTAGATTGGACTATTAACCTTGTGTGGGTGCAAGTAGAGAGCCTTTCCATACATATAGGCTCATGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR GCA 72 bp GATTCAACTTGTTATAAAAGATCTCTAGGGGTTAAATaGTTACTCCTGGCTACTGGGAAGGCTGAGACAGGA +
Preference number: 3 (lower is better)
Translates to: DSTCYKRSLGVK*LLLATGKAETG
Trigger: TCCTGTCTCAGCCTTCCCAGTAGCCAGGAGTAAGCATTTAACCCCTAGAGATCTTTTATAACAAGTTGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR-3UTR CAA 90 bp GTTGGGATTTGTCTCCACTATAGCACAGTGATTTCATTGTTGTTATTTCAGGGTCTTGCCCCAGGGCTGTaGTATTTAATAACCGAGGAT +
Preference number: 3 (lower is better)
Translates to: VGICLHYSTVISLLLFQGLAPGL*YLITED
Trigger: ATCCTCGGTTATTAAATACAACAGCCCTGGGGCAAG...ACCCTGAAATAACAACAATGAAATCACTGTGCTATAGTGGAGACAAATCCCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR TCA 90 bp CAGGTGAAGGCAAGAGCTCCCAAGACCCAGAGTGATCGAGAGGCCACCGCCAAGCTCCGCCCGCAGCGATaGGCAGCCCAGTCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: QVKARAPKTQSDREATAKLRPQR*AAQSWG
Trigger: ACCCCAAGACTGGGCTGCTCATCGCTGCGGGCGGAG...CTTGGCGGTGGCCTCTCGATCACTCTGGGTCTTGGGAGCTCTTGCCTTCACCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp CACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCCTCCGCCCGCAGCGATaGGCAGCCCAGTCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: HRRPQITATGVLFVPLPTLRPQR*AAQSWG
Trigger: ACCCCAAGACTGGGCTGCTCATCGCTGCGGGCGGAG...GGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp GGAGCCCTGGGAGGGAGGCTGAGGGAACGAGGCAGGCACTGTGGCCTGAGCTTCGAGGTCCCTGCTCCTTaGAACCTGACTTCTCCGCTT +
Preference number: 4 (lower is better)
Translates to: GALGGRLRERGRHCGLSFEVPAP*NLTSPL
Trigger: AAGCGGAGAAGTCAGGTTCCAAGGAGCAGGGACCTC...GAAGCTCAGGCCACAGTGCCTGCCTCGTTCCCTCAGCCTCCCTCCCAGGGCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR GCA 90 bp GCCCTGGGAGGGAGGCTGAGGGAACGAGGCAGGCACTGTGGCCTGAGCTTCAGAGCTGGTCCATTCTCTTaGCACTGTAGCTGTGTCACC +
Preference number: 4 (lower is better)
Translates to: ALGGRLRERGRHCGLSFRAGPFS*HCSCVT
Trigger: GGTGACACAGCTACAGTGGCAAGAGAATGGACCAGC...TCTGAAGCTCAGGCCACAGTGCCTGCCTCGTTCCCTCAGCCTCCCTCCCAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp TGGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGTCTTTATGCCGGTCTTaGCAGCTCCTCCTCCGCCCG +
Preference number: 4 (lower is better)
Translates to: WTDWLGATHRRPQITATGSLCRS*QLLLRP
Trigger: CGGGCGGAGGAGGAGCTGCCAAGACCGGCATAAAGA...CCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp CTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTCTTTATGCCGGTCTTaGCAGCTCCTCCTCCGCCCG +
Preference number: 4 (lower is better)
Translates to: LAWCYPQKATDHRYRGPLSLCRS*QLLLRP
Trigger: CGGGCGGAGGAGGAGCTGCCAAGACCGGCATAAAGA...AAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp CCACAGGTGAAGGCAAGAGCTCCCAAGACCCAGAGTGATCGAGAGGCCACCGCCCCCACCGAGCTGATCTaGAACCTGCCCAAACCTGCA +
Preference number: 4 (lower is better)
Translates to: PQVKARAPKTQSDREATAPTELI*NLPKPA
Trigger: TGCAGGTTTGGGCAGGTTCCAGATCAGCTCGGTGGG...GGCGGTGGCCTCTCGATCACTCTGGGTCTTGGGAGCTCTTGCCTTCACCTGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp TGGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGCGCTCAGGCACCCGTTaGTCAGCTCTAGCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: WTDWLGATHRRPQITATGRSGTR*SALAAE
Trigger: TTCTGCAGCTAGAGCTGATCAACGGGTGCCTGAGCG...CCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp GGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTGGAAACGAAGAAGCTaGCACTGGGCATCCTGTCCG +
Preference number: 4 (lower is better)
Translates to: GLTGLVLPTEGHRSPLPGWKRRS*HWASCP
Trigger: CGGACAGGATGCCCAGTGTCAGCTTCTTCGTTTCCA...CCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp GTGTCTGGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACGCAGCCCACCGAGCTaGTCTGGAACCTGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: VSGLTGLVLPTEGHRSPLRSPPS*SGTCPN
Trigger: GTTTGGGCAGGTTCCAGATCAGCTCGGTGGGCTGCG...TAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCAGACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp TACCGGGGTCCTCTTTGTGCCTCTTCCTACCCTAACAGCAAGTGCCAGCACAGGTGGCGACAGAGCCAGTaGCCGTGCCTAGGCCTAGGA +
Preference number: 4 (lower is better)
Translates to: YRGPLCASSYPNSKCQHRWRQSQ*PCLGLG
Trigger: TCCTAGGCCTAGGCACGGTCACTGGCTCTGTCGCCA...CCTGTGCTGGCACTTGCTGTTAGGGTAGGAAGAGGCACAAAGAGGACCCCGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR GCA 90 bp CCACAGGTGAAGGCAAGAGCTCCCAAGACCCAGAGTGATCGAGAGGCCACCGCCGCACGCCATTCTTTATaGCGGTCTTGGCAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: PQVKARAPKTQSDREATAARHSL*RSWQLL
Trigger: GAGGAGCTGCCAAGACCGGCATAAAGAATGGCGTGC...GGCGGTGGCCTCTCGATCACTCTGGGTCTTGGGAGCTCTTGCCTTCACCTGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp CCAGCACAGGCTCTGTCTCAACAAAGCCAAGGCCCTTGTGTGAAGGCTGGAGGGCCCGGGAAGGCAGTCTaGAGCAGCAGGATGGTCACA +
Preference number: 4 (lower is better)
Translates to: PAQALSQQSQGPCVKAGGPGKAV*SSRMVT
Trigger: TGTGACCATCCTGCTGCTCCAGACTGCCTTCCCGGG...CCCTCCAGCCTTCACACAAGGGCCTTGGCTTTGTTGAGACAGAGCCTGTGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
3UTR CAA 72 bp ACTTACCAACCCCCTACCCTTCCTGAGCCCTTCCGCTaGGCTGTCTTCTGGCAAGAGCCTCCCTCCCTAGTC +
Preference number: 4 (lower is better)
Translates to: TYQPPTLPEPFR*AVFWQEPPSLV
Trigger: GACTAGGGAGGGAGGCTCTTGCCAGAAGACAGCCAAGCGGAAGGGCTCAGGAAGGGTAGGGGGTTGGTAAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR TCA 90 bp TACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTCCCGCTCAGGCACCCGTTaGTCAGCTCTAGCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: YPQKATDHRYRGPLCASSRSGTR*SALAAE
Trigger: TTCTGCAGCTAGAGCTGATCAACGGGTGCCTGAGCG...GGAAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp CGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCCTAACAGCAAGTGCCAGCACCGTGTCTCCGTGTCATaGGAGTGCAGCAAGGAAGCG +
Preference number: 4 (lower is better)
Translates to: RYRGPLCASSYPNSKCQHRVSVS*ECSKEA
Trigger: CGCTTCCTTGCTGCACTCTCATGACACGGAGACACG...GTGCTGGCACTTGCTGTTAGGGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp AGAGGCCTCGTCTGGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTTGGAAACGAAGAAGCTaGCACTGGGCATCCTGTCCG +
Preference number: 4 (lower is better)
Translates to: RGLVWWLGPSFWPSWNNTWKRRS*HWASCP
Trigger: CGGACAGGATGCCCAGTGTCAGCTTCTTCGTTTCCA...AGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR GCA 90 bp CTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCGCTGGTCCATTCTCTTaGCACTGTAGCTGTGTCACC +
Preference number: 4 (lower is better)
Translates to: LTGLVLPTEGHRSPLPGSAGPFS*HCSCVT
Trigger: GGTGACACAGCTACAGTGGCAAGAGAATGGACCAGC...GGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR GCA 90 bp AGGGAGGCTGAGGGAACGAGGCAGGCACTGTGGCCTGAGCTTCAGACCACAATGCGCTTGTGGGGTATCTaGACTGTGAAGAGTCGCAGC +
Preference number: 4 (lower is better)
Translates to: REAEGTRQALWPELQTTMRLWGI*TVKSRS
Trigger: GCTGCGACTCTTCACAGTGCAGATACCCCACAAGCG...CATTGTGGTCTGAAGCTCAGGCCACAGTGCCTGCCTCGTTCCCTCAGCCTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp ACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTGCGCCAAATTCATGGTaGCCCGTGTCTCCGTGTCAT +
Preference number: 4 (lower is better)
Translates to: TGLVLPTEGHRSPLPGSSAPNSW*PVSPCH
Trigger: ATGACACGGAGACACGGGCCACCATGAATTTGGCGC...AGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp CAGGTGAAGGCAAGAGCTCCCAAGACCCAGAGTGATCGAGAGGCCACCGCCAAGCAAGCGCCAAATTCATaGTGGCCCGTGTCTCCGTGT +
Preference number: 4 (lower is better)
Translates to: QVKARAPKTQSDREATAKQAPNS*WPVSPC
Trigger: ACACGGAGACACGGGCCACCATGAATTTGGCGCTTG...CTTGGCGGTGGCCTCTCGATCACTCTGGGTCTTGGGAGCTCTTGCCTTCACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp GTGAAGGCAAGAGCTCCCAAGACCCAGAGTGATCGAGAGGCCACCGCCAAGTGTCCCACCGAGCTGATCTaGAACCTGCCCAAACCTGCA +
Preference number: 4 (lower is better)
Translates to: VKARAPKTQSDREATAKCPTELI*NLPKPA
Trigger: TGCAGGTTTGGGCAGGTTCCAGATCAGCTCGGTGGG...ACACTTGGCGGTGGCCTCTCGATCACTCTGGGTCTTGGGAGCTCTTGCCTTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp CCACAGGTGAAGGCAAGAGCTCCCAAGACCCAGAGTGATCGAGAGGCCACCGCCCCCCTTCATGGGCTTTaGACTCCAGAACTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: PQVKARAPKTQSDREATAPLHGL*TPELSP
Trigger: TGGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGG...GGCGGTGGCCTCTCGATCACTCTGGGTCTTGGGAGCTCTTGCCTTCACCTGTGG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp CTTTGTGCCTCTTCCTACCCTAACAGCAAGTGCCAGCACAGGCTCTGTCTCAACCGCAGCCCACCGAGCTaGTCTGGAACCTGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: LCASSYPNSKCQHRLCLNRSPPS*SGTCPN
Trigger: GTTTGGGCAGGTTCCAGATCAGCTCGGTGGGCTGCG...GTTGAGACAGAGCCTGTGCTGGCACTTGCTGTTAGGGTAGGAAGAGGCACAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR GCA 90 bp GGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTGTGGAGCACGCCATTCTTTATaGCGGTCTTGGCAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: GWAPVSGLPGTTLSSHCGARHSL*RSWQLL
Trigger: GAGGAGCTGCCAAGACCGGCATAAAGAATGGCGTGC...TCCACAGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR GCA 90 bp TCAGATGCAGCTTCAGCCGTGGGGCTCAGTGATTCTGCTCTGGAAGGCGGCACTCGCTTGTGGGGTATCTaGACTGTGAAGAGTCGCAGC +
Preference number: 4 (lower is better)
Translates to: SDAASAVGLSDSALEGGTRLWGI*TVKSRS
Trigger: GCTGCGACTCTTCACAGTGCAGATACCCCACAAGCG...AGTGCCGCCTTCCAGAGCAGAATCACTGAGCCCCACGGCTGAAGCTGCATCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp ACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTCCTGCGCCAAATTCATGGTaGCCCGTGTCTCCGTGTCAT +
Preference number: 4 (lower is better)
Translates to: THRRPQITATGVLFVPLPAPNSW*PVSPCH
Trigger: ATGACACGGAGACACGGGCCACCATGAATTTGGCGC...AGGAAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp AAGACCCAGAGTGATCGAGAGGCCACCGCCAAGTGTGAGCTGAGGGACAAGCAGGAGGTCCCTGCTCCTTaGAACCTGACTTCTCCGCTT +
Preference number: 4 (lower is better)
Translates to: KTQSDREATAKCELRDKQEVPAP*NLTSPL
Trigger: AAGCGGAGAAGTCAGGTTCCAAGGAGCAGGGACCTC...CTGCTTGTCCCTCAGCTCACACTTGGCGGTGGCCTCTCGATCACTCTGGGTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp ACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTCGATTTCTTCTCTGCTaGAGGAGCCCCCTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: TGLVLPTEGHRSPLPGSSRFLLC*RSPLSL
Trigger: CAGAGAAAGGGGGCTCCTCCAGCAGAGAAGAAATCG...AGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR CAA 72 bp TCTTCAATCAGCCACTCACTGCTGGACTCTGCCGGCTaGTGGCCAGGTAGGATAGCAGATGGCAGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: SSISHSLLDSAG*WPGRIADGRLC
Trigger: GCAGAGCCTGCCATCTGCTATCCTACCTGGCCACAAGCCGGCAGAGTCCAGCAGTGAGTGGCTGATTGAAGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR TCA 90 bp ACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCCAGCTGTGTCACCAGTTaGTCCTTCTGCCACACAGAG +
Preference number: 4 (lower is better)
Translates to: TEGHRSPLPGSSLCLFLPSCVTS*SFCHTE
Trigger: CTCTGTGTGGCAGAAGGATCAACTGGTGACACAGCT...GGGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR GCA 90 bp CCTACAGGTAACATAACAAGGCCCTGTGCCCATCAGTGGGGTCATGGGGCCTGTCTCTGTCGAGGTCCCTaGTCCTTGGAACCTGACTTC +
Preference number: 4 (lower is better)
Translates to: PTGNITRPCAHQWGHGACLCRGP*SLEPDF
Trigger: GAAGTCAGGTTCCAAGGAGCAGGGACCTCGACAGAG...ACAGGCCCCATGACCCCACTGATGGGCACAGGGCCTTGTTATGTTACCTGTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR GCA 90 bp GATTCCGGGGAGGAGCTCACTGACCCTCCAGTGTCTGGGACAGGACAACAAAAGCGCTTGTGGGGTATCTaGACTGTGAAGAGTCGCAGC +
Preference number: 4 (lower is better)
Translates to: DSGEELTDPPVSGTGQQKRLWGI*TVKSRS
Trigger: GCTGCGACTCTTCACAGTGCAGATACCCCACAAGCG...CTTTTGTTGTCCTGTCCCAGACACTGGAGGGTCAGTGAGCTCCTCCCCGGAATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR TCA 90 bp CTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCGGGTGTTATCATGGTTaGAGCACACAACTTTCTGCA +
Preference number: 4 (lower is better)
Translates to: LTGLVLPTEGHRSPLPGSGCYHG*STQLSA
Trigger: TGCAGAAAGTTGTGTGCTTCAACCATGATAACACCC...GGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp AAATATCAACTCTTCCTGCCTAACGAGCTGAGGTTCCCTTTCCTCAGGCTGCAGCGCAGCCCACCGAGCTaGTCTGGAACCTGCCCAAAC +
Preference number: 4 (lower is better)
Translates to: KYQLFLPNELRFPFLRLQRSPPS*SGTCPN
Trigger: GTTTGGGCAGGTTCCAGATCAGCTCGGTGGGCTGCG...CTGCAGCCTGAGGAAAGGGAACCTCAGCTCGTTAGGCAGGAAGAGTTGATATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
3UTR CAA 72 bp CCTCCAGGAACTCACTATGTGTCTGGACTGACTGGCTaGGTGCTACCCACAGAAGGCCACAGATCACCGCTA +
Preference number: 4 (lower is better)
Translates to: PPGTHYVSGLTG*VLPTEGHRSPL
Trigger: TAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCAGACACATAGTGAGTTCCTGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR CAA 72 bp GGGCTTGGCTCACACTCCTATCTTGCCCCAGGGCTGTaGTATTTAATAACCGAGGATGCCGAGGGGAAGAGC +
Preference number: 4 (lower is better)
Translates to: GLGSHSYLAPGL*YLITEDAEGKS
Trigger: GCTCTTCCCCTCGGCATCCTCGGTTATTAAATACAACAGCCCTGGGGCAAGATAGGAGTGTGAGCCAAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR TCA 90 bp TATGTGTCTGGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGAGCTGTGTCACCAGTTaGTCCTTCTGCCACACAGAG +
Preference number: 4 (lower is better)
Translates to: YVSGLTGLVLPTEGHRSPSCVTS*SFCHTE
Trigger: CTCTGTGTGGCAGAAGGATCAACTGGTGACACAGCT...CGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCAGACACATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp CTACCTCTAACTCCAGCTCCAGAGGATCCAACACTTCTTCTGGATCTCACAGGCCCCACCGAGCTGATCTaGAACCTGCCCAAACCTGCA +
Preference number: 4 (lower is better)
Translates to: LPLTPAPEDPTLLLDLTGPTELI*NLPKPA
Trigger: TGCAGGTTTGGGCAGGTTCCAGATCAGCTCGGTGGG...GCCTGTGAGATCCAGAAGAAGTGTTGGATCCTCTGGAGCTGGAGTTAGAGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR CCA 90 bp GTTCTGTTCCTGGCAACTACATGGCACTCCCAGTTCACAACTGTCAGTAACACCCCCGGGAAGGCAGTCTaGAGCAGCAGGATGGTCACA +
Preference number: 4 (lower is better)
Translates to: VLFLATTWHSQFTTVSNTPGKAV*SSRMVT
Trigger: TGTGACCATCCTGCTGCTCCAGACTGCCTTCCCGGG...GGTGTTACTGACAGTTGTGAACTGGGAGTGCCATGTAGTTGCCAGGAACAGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
3UTR CAA 72 bp CTTAACTATCTGGCACAGACTGGGAAGGCTGGAGGCTaGGTCGCAGGACTGACCATTGTCTGCATGTTGGGA +
Preference number: 4 (lower is better)
Translates to: LNYLAQTGKAGG*VAGLTIVCMLG
Trigger: TCCCAACATGCAGACAATGGTCAGTCCTGCGACCAAGCCTCCAGCCTTCCCAGTCTGTGCCAGATAGTTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 72 bp GAGCGGCTTATAGTACCTGTTCTAGCACAAGTGGGTTaGAGGAGGGGACAGGCTGAGTGTGGGAGTCAGTAC +
Preference number: 4 (lower is better)
Translates to: ERLIVPVLAQVG*RRGQAECGSQY
Trigger: GTACTGACTCCCACACTCAGCCTGTCCCCTCCTCAAACCCACTTGTGCTAGAACAGGTACTATAAGCCGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 72 bp TCAGGGCTTGGTGCCCATCAACCTCGTTTGTCCCCATaGTCCCATCACTGTGCCCTTTTCTCTAGTTGGCAC +
Preference number: 4 (lower is better)
Translates to: SGLGAHQPRLSP*SHHCALFSSWH
Trigger: GTGCCAACTAGAGAAAAGGGCACAGTGATGGGACAATGGGGACAAACGAGGTTGATGGGCACCAAGCCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 72 bp AAAGAACCAAGCGAAGAGGCAGAAGAGAGTCAGGGCTaGGTGCCCATCAACCTCGTTTGTCCCCATTGTCCC +
Preference number: 4 (lower is better)
Translates to: KEPSEEAEESQG*VPINLVCPHCP
Trigger: GGGACAATGGGGACAAACGAGGTTGATGGGCACCAAGCCCTGACTCTCTTCTGCCTCTTCGCTTGGTTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR TCA 90 bp GCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTGGGTGTTATCATGGTTaGAGCACACAACTTTCTGCA +
Preference number: 4 (lower is better)
Translates to: ATHRRPQITATGVLFVPLGCYHG*STQLSA
Trigger: TGCAGAAAGTTGTGTGCTTCAACCATGATAACACCC...AAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp TCTGGGTTAGGTGCAGGAGTTCAGACAAACCCTGATGTATTCTTTTCCAGGAACTGGCGACAGAGCCAGTaGCCGTGCCTAGGCCTAGGA +
Preference number: 4 (lower is better)
Translates to: SGLGAGVQTNPDVFFSRNWRQSQ*PCLGLG
Trigger: TCCTAGGCCTAGGCACGGTCACTGGCTCTGTCGCCA...GTTCCTGGAAAAGAATACATCAGGGTTTGTCTGAACTCCTGCACCTAACCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR GCA 90 bp ACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCCTTGATCAGCTCTAGCTaGAGAAAATGCACGCCATTC +
Preference number: 4 (lower is better)
Translates to: TEGHRSPLPGSSLCLFLPLISSS*RKCTPF
Trigger: GAATGGCGTGCATTTTCTGCAGCTAGAGCTGATCAA...GGGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp CCTACAGGTAACATAACAAGGCCCTGTGCCCATCAGTGGGGTCATGGGGCCTGTCATCAGTTCCTCCAGTaGCAAGCAGGGTGTTATCAT +
Preference number: 4 (lower is better)
Translates to: PTGNITRPCAHQWGHGACHQFLQ*QAGCYH
Trigger: ATGATAACACCCTGCTTGCCACTGGAGGAACTGATG...ACAGGCCCCATGACCCCACTGATGGGCACAGGGCCTTGTTATGTTACCTGTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR CCA 90 bp ACCAAACCAGACAAAAACTCCAGTTTACCAGCCAGAGGAGCACAGGCCATACTCGGGCCCAAGGAGCTTTaGACCACAACCCTTCTCAGG +
Preference number: 4 (lower is better)
Translates to: TKPDKNSSLPARGAQAILGPKEL*TTTLLR
Trigger: CCTGAGAAGGGTTGTGGTCCAAAGCTCCTTGGGCCC...GAGTATGGCCTGTGCTCCTCTGGCTGGTAAACTGGAGTTTTTGTCTGGTTTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR CCA 90 bp GATTCCGGGGAGGAGCTCACTGACCCTCCAGTGTCTGGGACAGGACAACAAAAGAAAAGAGCAGTTTCATaGGGCCCAAGGAGCTTTGGA +
Preference number: 4 (lower is better)
Translates to: DSGEELTDPPVSGTGQQKKRAVS*GPRSFG
Trigger: TCCAAAGCTCCTTGGGCCCCATGAAACTGCTCTTTT...CTTTTGTTGTCCTGTCCCAGACACTGGAGGGTCAGTGAGCTCCTCCCCGGAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
3UTR CAA 72 bp CGCAGGACTGACCATTGTCTGCATGTTGGGATTCCTTaGAGACCGTTGACTCCTTGGAGACCCCACTCAACT +
Preference number: 4 (lower is better)
Translates to: RRTDHCLHVGIP*RPLTPWRPHST
Trigger: AGTTGAGTGGGGTCTCCAAGGAGTCAACGGTCTCAAAGGAATCCCAACATGCAGACAATGGTCAGTCCTGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 72 bp AGAAGAGAGTCAGGGCTTGGTGCCCATCAACCTCGTTaGTCCCCATTGTCCCATCACTGTGCCCTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: RRESGLGAHQPR*SPLSHHCALFS
Trigger: AGAGAAAAGGGCACAGTGATGGGACAATGGGGACAAACGAGGTTGATGGGCACCAAGCCCTGACTCTCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR TCA 90 bp AAGAGGCCAATGTGTTGTATGATTATAGAGGCCTCGTCTGGTGGCTGGGCCCCACCCCTTCATGGGCTTTaGACTCCAGAACTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: KRPMCCMIIEASSGGWAPPLHGL*TPELSP
Trigger: TGGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGG...TGGGGCCCAGCCACCAGACGAGGCCTCTATAATCATACAACACATTGGCCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR GCA 90 bp TACCATGCCTCTACCACACAGGCCCGCACGATCCGCCAGCTGGATGAGCGCTACGAAGTCTGTCTGTACTaGCTCCAAATTCTTTACTTT +
Preference number: 4 (lower is better)
Translates to: YHASTTQARTIRQLDERYEVCLY*LQILYF
Trigger: AAAGTAAAGAATTTGGAGGCAGTACAGACAGACTTC...GTAGCGCTCATCCAGCTGGCGGATCGTGCGGGCCTGTGTGGTAGAGGCATGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR GCA 90 bp TATGTGTCTGGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCATCTGTTACCACAATaGCATGGGCCTCCTTCACAT +
Preference number: 4 (lower is better)
Translates to: YVSGLTGLVLPTEGHRSPHLLPQ*HGPPSH
Trigger: ATGTGAAGGAGGCCCATGGCATTGTGGTAACAGATG...CGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCAGACACATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR CCA 90 bp GCCAAGTGTGAGCTGAGGGACAAGCAGTACCCATCAGTTTCATCAGATGCAGCTCGATTTCTTCTCTGCTaGAGGAGCCCCCTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: AKCELRDKQYPSVSSDAARFLLC*RSPLSL
Trigger: CAGAGAAAGGGGGCTCCTCCAGCAGAGAAGAAATCG...AGCTGCATCTGATGAAACTGATGGGTACTGCTTGTCCCTCAGCTCACACTTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp GCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTAGCAGGGTGTTATCATaGTTGAAGCACACAACTTTC +
Preference number: 4 (lower is better)
Translates to: ATHRRPQITATGVLFVPLSRVLS*LKHTTF
Trigger: GAAAGTTGTGTGCTTCAACCATGATAACACCCTGCT...AAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp CGAGGCAGGCACTGTGGCCTGAGCTTCAGACCACAATGTCTTAAGTGGATCCACCATCAGTTCCTCCAGTaGCAAGCAGGGTGTTATCAT +
Preference number: 4 (lower is better)
Translates to: RGRHCGLSFRPQCLKWIHHQFLQ*QAGCYH
Trigger: ATGATAACACCCTGCTTGCCACTGGAGGAACTGATG...GTGGATCCACTTAAGACATTGTGGTCTGAAGCTCAGGCCACAGTGCCTGCCTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR TCA 90 bp AAATATCAACTCTTCCTGCCTAACGAGCTGAGGTTCCCTTTCCTCAGGCTGCAGAGCTGTGTCACCAGTTaGTCCTTCTGCCACACAGAG +
Preference number: 4 (lower is better)
Translates to: KYQLFLPNELRFPFLRLQSCVTS*SFCHTE
Trigger: CTCTGTGTGGCAGAAGGATCAACTGGTGACACAGCT...CTGCAGCCTGAGGAAAGGGAACCTCAGCTCGTTAGGCAGGAAGAGTTGATATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR GCA 90 bp CTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTGAAGTCTGTCTGTACTaGCTCCAAATTCTTTACTTT +
Preference number: 4 (lower is better)
Translates to: LAWCYPQKATDHRYRGPLEVCLY*LQILYF
Trigger: AAAGTAAAGAATTTGGAGGCAGTACAGACAGACTTC...AAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp TCAGACCACAATGTCTTAAGTGGATCCACAGGTGAAGGCAAGAGCTCCCAAGACCGATTTCTTCTCTGCTaGAGGAGCCCCCTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: SDHNVLSGSTGEGKSSQDRFLLC*RSPLSL
Trigger: CAGAGAAAGGGGGCTCCTCCAGCAGAGAAGAAATCG...GTCTTGGGAGCTCTTGCCTTCACCTGTGGATCCACTTAAGACATTGTGGTCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp TCACTATGTGTCTGGACTGACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCCCAATCTCCCCTTCATaGGCTTTGAACTCCAGAACT +
Preference number: 4 (lower is better)
Translates to: SLCVWTDWLGATHRRPQIPISPS*ALNSRT
Trigger: AGTTCTGGAGTTCAAAGCCCATGAAGGGGAGATTGG...GATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGTCCAGACACATAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
3UTR CAA 72 bp GACCATTGTCTGCATGTTGGGATTCCTTTGAGACCGTaGACTCCTTGGAGACCCCACTCAACTCACTGCTCT +
Preference number: 4 (lower is better)
Translates to: DHCLHVGIPLRP*TPWRPHSTHCS
Trigger: AGAGCAGTGAGTTGAGTGGGGTCTCCAAGGAGTCAACGGTCTCAAAGGAATCCCAACATGCAGACAATGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 72 bp ACCATATGCCACTCTAGGCTGAGCTGTGCTGGACACTaGACTGTGGCAAATCCATCCTTAAGGCTGGATTCC +
Preference number: 4 (lower is better)
Translates to: TICHSRLSCAGH*TVANPSLRLDS
Trigger: GGAATCCAGCCTTAAGGATGGATTTGCCACAGTCAAGTGTCCAGCACAGCTCAGCCTAGAGTGGCATATGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 72 bp CCTGAAGAGCATATACTTCTGTCCCTGCAGATCAGTTaGTCCCAGCTTCCATGCTGTGGCTCTCTCAGCTAC +
Preference number: 4 (lower is better)
Translates to: PEEHILLSLQIS*SQLPCCGSLSY
Trigger: GTAGCTGAGAGAGCCACAGCATGGAAGCTGGGACAAACTGATCTGCAGGGACAGAAGTATATGCTCTTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR GCA 90 bp GCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTGAAGTCTGTCTGTACTaGCTCCAAATTCTTTACTTT +
Preference number: 4 (lower is better)
Translates to: ATHRRPQITATGVLFVPLEVCLY*LQILYF
Trigger: AAAGTAAAGAATTTGGAGGCAGTACAGACAGACTTC...AAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp CAGGAGGATCACTTGAGCCCAAGAGTTTTGCGCCATTCTGGCCTACAGGTAACACATCAGTTCCTCCAGTaGCAAGCAGGGTGTTATCAT +
Preference number: 4 (lower is better)
Translates to: QEDHLSPRVLRHSGLQVTHQFLQ*QAGCYH
Trigger: ATGATAACACCCTGCTTGCCACTGGAGGAACTGATG...TGTTACCTGTAGGCCAGAATGGCGCAAAACTCTTGGGCTCAAGTGATCCTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR CCA 90 bp CAGGAGGATCACTTGAGCCCAAGAGTTTTGCGCCATTCTGGCCTACAGGTAACACCAATCTCCCCTTCATaGGCTTTGAACTCCAGAACT +
Preference number: 4 (lower is better)
Translates to: QEDHLSPRVLRHSGLQVTPISPS*ALNSRT
Trigger: AGTTCTGGAGTTCAAAGCCCATGAAGGGGAGATTGG...TGTTACCTGTAGGCCAGAATGGCGCAAAACTCTTGGGCTCAAGTGATCCTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
3UTR CAA 72 bp TCTGCATGTTGGGATTCCTTTGAGACCGTTGACTCCTaGGAGACCCCACTCAACTCACTGCTCTTCAATCAG +
Preference number: 4 (lower is better)
Translates to: SACWDSFETVDS*ETPLNSLLFNQ
Trigger: CTGATTGAAGAGCAGTGAGTTGAGTGGGGTCTCCAAGGAGTCAACGGTCTCAAAGGAATCCCAACATGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR TCA 90 bp TCAGACCACAATGTCTTAAGTGGATCCACAGGTGAAGGCAAGAGCTCCCAAGACTTACTGCCCTTCTGTTaGTGGACCTGGAAACGAAGA +
Preference number: 4 (lower is better)
Translates to: SDHNVLSGSTGEGKSSQDLLPFC*WTWKRR
Trigger: TCTTCGTTTCCAGGTCCATCAACAGAAGGGCAGTAA...GTCTTGGGAGCTCTTGCCTTCACCTGTGGATCCACTTAAGACATTGTGGTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp GGATCTCACAGGCAAGATCTGACCTGTGTGCCCATGCTCATAGGAGAGGCACATAGCAGGGTGTTATCATaGTTGAAGCACACAACTTTC +
Preference number: 4 (lower is better)
Translates to: GSHRQDLTCVPMLIGEAHSRVLS*LKHTTF
Trigger: GAAAGTTGTGTGCTTCAACCATGATAACACCCTGCT...ATGTGCCTCTCCTATGAGCATGGGCACACAGGTCAGATCTTGCCTGTGAGATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR TCA 90 bp GTTCTGTTCCTGGCAACTACATGGCACTCCCAGTTCACAACTGTCAGTAACACCGGGTGTTATCATGGTTaGAGCACACAACTTTCTGCA +
Preference number: 4 (lower is better)
Translates to: VLFLATTWHSQFTTVSNTGCYHG*STQLSA
Trigger: TGCAGAAAGTTGTGTGCTTCAACCATGATAACACCC...GGTGTTACTGACAGTTGTGAACTGGGAGTGCCATGTAGTTGCCAGGAACAGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR GCA 90 bp TCAGACCACAATGTCTTAAGTGGATCCACAGGTGAAGGCAAGAGCTCCCAAGACTTGATCAGCTCTAGCTaGAGAAAATGCACGCCATTC +
Preference number: 4 (lower is better)
Translates to: SDHNVLSGSTGEGKSSQDLISSS*RKCTPF
Trigger: GAATGGCGTGCATTTTCTGCAGCTAGAGCTGATCAA...GTCTTGGGAGCTCTTGCCTTCACCTGTGGATCCACTTAAGACATTGTGGTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CCA 90 bp GCCAAGTGTGAGCTGAGGGACAAGCAGTACCCATCAGTTTCATCAGATGCAGCTAGCAGGGTGTTATCATaGTTGAAGCACACAACTTTC +
Preference number: 4 (lower is better)
Translates to: AKCELRDKQYPSVSSDAASRVLS*LKHTTF
Trigger: GAAAGTTGTGTGCTTCAACCATGATAACACCCTGCT...AGCTGCATCTGATGAAACTGATGGGTACTGCTTGTCCCTCAGCTCACACTTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
3UTR CAA 72 bp GCATTTGGACAAGGTTGCTACAATGCAAAGGCCAGATaGAATGGCAGAGGTATCTTCACCTGGTCAAGAGTC +
Preference number: 4 (lower is better)
Translates to: AFGQGCYNAKAR*NGRGIFTWSRV
Trigger: GACTCTTGACCAGGTGAAGATACCTCTGCCATTCAATCTGGCCTTTGCATTGTAGCAACCTTGTCCAAATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 72 bp ACATGCAGAAGTGCAACTCCTAATAACATCTTTGTGTaGCAATCTCTAAACCCCAGTGAAGTCCTCCAGACC +
Preference number: 4 (lower is better)
Translates to: TCRSATPNNIFV*QSLNPSEVLQT
Trigger: GGTCTGGAGGACTTCACTGGGGTTTAGAGATTGCAACACAAAGATGTTATTAGGAGTTGCACTTCTGCATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR TCA 90 bp TGTTCTCTCTTTATTAAATATCAACTCTTCCTGCCTAACGAGCTGAGGTTCCCTTTACTGCCCTTCTGTTaGTGGACCTGGAAACGAAGA +
Preference number: 4 (lower is better)
Translates to: CSLFIKYQLFLPNELRFPLLPFC*WTWKRR
Trigger: TCTTCGTTTCCAGGTCCATCAACAGAAGGGCAGTAA...AGGGAACCTCAGCTCGTTAGGCAGGAAGAGTTGATATTTAATAAAGAGAGAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
3UTR CAA 72 bp GGGATTTGTCTCCACTATAGCACAGTGATTTCATTGTaGTTATTTCAGGGTTTAAGGACCAGGGTCCAAGTC +
Preference number: 4 (lower is better)
Translates to: GICLHYSTVISL*LFQGLRTRVQV
Trigger: GACTTGGACCCTGGTCCTTAAACCCTGAAATAACAACAATGAAATCACTGTGCTATAGTGGAGACAAATCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
3UTR CAA 72 bp GTTGGGATTTGTCTCCACTATAGCACAGTGATTTCATaGTTGTTATTTCAGGGTTTAAGGACCAGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: VGICLHYSTVIS*LLFQGLRTRVQ
Trigger: TTGGACCCTGGTCCTTAAACCCTGAAATAACAACAATGAAATCACTGTGCTATAGTGGAGACAAATCCCAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS TCA 90 bp AGCAGGGTGGGGGCTGACGTAGGCGCTTGTGGGGTATCTGCACTGTaGAGAGTCGCAGCCCACCGAGCTGATCTGGAACCTGCCCAAACC +
Preference number: 5 (lower is better)
Translates to: SRVGADVGACGVSAL*RVAAHRADLEPAQT
Trigger: GGTTTGGGCAGGTTCCAGATCAGCTCGGTGGGCTGCGACTCTTCACAGTGCAGATACCCCACAAGCGCCTACGTCAGCCCCCACCCTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS TCA 90 bp CATTCTTTATGCCGGTCTTGGCAGCTCCTCCTCCGCCCGCAGCGATaGGCAGCCCAGTCTTGGGGTCTATCCGAAGCGCGTACAACGGGA +
Preference number: 5 (lower is better)
Translates to: HSLCRSWQLLLRPQR*AAQSWGLSEARTTG
Trigger: TCCCGTTGTACGCGCTTCGGATAGACCCCAAGACTGGGCTGCTCATCGCTGCGGGCGGAGGAGGAGCTGCCAAGACCGGCATAAAGAATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp ACCGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCCTAACAGCAAGTGCCAGCTTCTTTATGCCGGTCTaGGCAGCTCCTCCTCCGCCC +
Preference number: 5 (lower is better)
Translates to: TATGVLFVPLPTLTASASFFMPV*AAPPPP
Trigger: GGGCGGAGGAGGAGCTGCCAAGACCGGCATAAAGAA...GCTGGCACTTGCTGTTAGGGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp CGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCCTAACAGCAAGTGCCAGCACGCGCTCAGGCACCCGTaGATCAGCTCTAGCTGCAGA +
Preference number: 5 (lower is better)
Translates to: RYRGPLCASSYPNSKCQHALRHP*ISSSCR
Trigger: TCTGCAGCTAGAGCTGATCAACGGGTGCCTGAGCGC...GTGCTGGCACTTGCTGTTAGGGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp CGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCCTAACAGCAAGTGCCAGCACCGAGGTCCCTGCTCCTaGGAACCTGACTTCTCCGCT +
Preference number: 5 (lower is better)
Translates to: RYRGPLCASSYPNSKCQHRGPCS*EPDFSA
Trigger: AGCGGAGAAGTCAGGTTCCAAGGAGCAGGGACCTCG...GTGCTGGCACTTGCTGTTAGGGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp ACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTCCTGGGGCCCAAGGAGCTTaGGACCACAACCCTTCTCAG +
Preference number: 5 (lower is better)
Translates to: THRRPQITATGVLFVPLPGAQGA*DHNPSQ
Trigger: CTGAGAAGGGTTGTGGTCCAAAGCTCCTTGGGCCCC...AGGAAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR CAA 90 bp GATCGAGAGGCCACCGCCAAGTGTGAGCTGAGGGACAAGCAGTACCCATCAGTTATGAGCAGCCCAGTCTaGGGGTCTATCCGAAGCGCG +
Preference number: 5 (lower is better)
Translates to: DREATAKCELRDKQYPSVMSSPV*GSIRSA
Trigger: CGCGCTTCGGATAGACCCCAAGACTGGGCTGCTCAT...AACTGATGGGTACTGCTTGTCCCTCAGCTCACACTTGGCGGTGGCCTCTCGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp GATCGAGAGGCCACCGCCAAGTGTGAGCTGAGGGACAAGCAGTACCCATCAGTTTTCTTTATGCCGGTCTaGGCAGCTCCTCCTCCGCCC +
Preference number: 5 (lower is better)
Translates to: DREATAKCELRDKQYPSVFFMPV*AAPPPP
Trigger: GGGCGGAGGAGGAGCTGCCAAGACCGGCATAAAGAA...AACTGATGGGTACTGCTTGTCCCTCAGCTCACACTTGGCGGTGGCCTCTCGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS TCA 90 bp TCACCAGCAAGCGCCAAATTCATGGTGGCCCGTGTCTCCGTGTCATaGGAGTGCAGCAAGGAAGCGCTCAGGCACCCGTTGATCAGCTCT +
Preference number: 5 (lower is better)
Translates to: SPASAKFMVARVSVS*ECSKEALRHPLISS
Trigger: AGAGCTGATCAACGGGTGCCTGAGCGCTTCCTTGCTGCACTCTCATGACACGGAGACACGGGCCACCATGAATTTGGCGCTTGCTGGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CCA 90 bp CCTGTCCGGCAGCAAGAATGTCACCAGCAAGCGCCAAATTCATGGTaGCCCGTGTCTCCGTGTCATGAGAGTGCAGCAAGGAAGCGCTCA +
Preference number: 5 (lower is better)
Translates to: PVRQQECHQQAPNSW*PVSPCHESAARKRS
Trigger: TGAGCGCTTCCTTGCTGCACTCTCATGACACGGAGACACGGGCCACCATGAATTTGGCGCTTGCTGGTGACATTCTTGCTGCCGGACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CCA 90 bp CATCCTGTCCGGCAGCAAGAATGTCACCAGCAAGCGCCAAATTCATaGTGGCCCGTGTCTCCGTGTCATGAGAGTGCAGCAAGGAAGCGC +
Preference number: 5 (lower is better)
Translates to: HPVRQQECHQQAPNS*WPVSPCHESAARKR
Trigger: GCGCTTCCTTGCTGCACTCTCATGACACGGAGACACGGGCCACCATGAATTTGGCGCTTGCTGGTGACATTCTTGCTGCCGGACAGGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS TCA 90 bp TGGAGGAGCCCCCTTTCTCTGTCGAGGTCCCTGCTCCTTGGAACCTaGCTTCTCCGCTTTACTGCCCTTCTGTTGATGGACCTGGAAACG +
Preference number: 5 (lower is better)
Translates to: WRSPLSLSRSLLLGT*LLRFTALLLMDLET
Trigger: CGTTTCCAGGTCCATCAACAGAAGGGCAGTAAAGCGGAGAAGTCAGGTTCCAAGGAGCAGGGACCTCGACAGAGAAAGGGGGCTCCTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CCA 90 bp TCTCTGCTGGAGGAGCCCCCTTTCTCTGTCGAGGTCCCTGCTCCTTaGAACCTGACTTCTCCGCTTTACTGCCCTTCTGTTGATGGACCT +
Preference number: 5 (lower is better)
Translates to: SLLEEPPFSVEVPAP*NLTSPLYCPSVDGP
Trigger: AGGTCCATCAACAGAAGGGCAGTAAAGCGGAGAAGTCAGGTTCCAAGGAGCAGGGACCTCGACAGAGAAAGGGGGCTCCTCCAGCAGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp CAGGAGGATCACTTGAGCCCAAGAGTTTTGCGCCATTCTGGCCTACAGGTAACAATGAGCAGCCCAGTCTaGGGGTCTATCCGAAGCGCG +
Preference number: 5 (lower is better)
Translates to: QEDHLSPRVLRHSGLQVTMSSPV*GSIRSA
Trigger: CGCGCTTCGGATAGACCCCAAGACTGGGCTGCTCAT...TGTTACCTGTAGGCCAGAATGGCGCAAAACTCTTGGGCTCAAGTGATCCTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR CAA 90 bp AGGGAGGCTGAGGGAACGAGGCAGGCACTGTGGCCTGAGCTTCAGACCACAATGTTTACTGCCCTTCTGTaGATGGACCTGGAAACGAAG +
Preference number: 5 (lower is better)
Translates to: REAEGTRQALWPELQTTMFTALL*MDLETK
Trigger: CTTCGTTTCCAGGTCCATCAACAGAAGGGCAGTAAA...CATTGTGGTCTGAAGCTCAGGCCACAGTGCCTGCCTCGTTCCCTCAGCCTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp ACTGGCTTGGTGCTACCCACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTCTGCAGCGGTTCATaGCTGAAGTCTGTCTGTACT +
Preference number: 5 (lower is better)
Translates to: TGLVLPTEGHRSPLPGSSFCSGS*LKSVCT
Trigger: AGTACAGACAGACTTCAGCAATGAACCGCTGCAGAA...AGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS TCA 90 bp TCTCCGTGTCATGAGAGTGCAGCAAGGAAGCGCTCAGGCACCCGTTaGTCAGCTCTAGCTGCAGAAAATGCACGCCATTCTTTATGCCGG +
Preference number: 5 (lower is better)
Translates to: SPCHESAARKRSGTR*SALAAENARHSLCR
Trigger: CCGGCATAAAGAATGGCGTGCATTTTCTGCAGCTAGAGCTGATCAACGGGTGCCTGAGCGCTTCCTTGCTGCACTCTCATGACACGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp GGTGGCTGGGCCCCAGTTTCTGGCCTTCCTGGAACAACACTGTCCAGTCACTGTTTTACTGCCCTTCTGTaGATGGACCTGGAAACGAAG +
Preference number: 5 (lower is better)
Translates to: GGWAPVSGLPGTTLSSHCFTALL*MDLETK
Trigger: CTTCGTTTCCAGGTCCATCAACAGAAGGGCAGTAAA...ACAGTGACTGGACAGTGTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR CAA 90 bp ACCAAACCAGACAAAAACTCCAGTTTACCAGCCAGAGGAGCACAGGCCATACTCCGAGGTCCCTGCTCCTaGGAACCTGACTTCTCCGCT +
Preference number: 5 (lower is better)
Translates to: TKPDKNSSLPARGAQAILRGPCS*EPDFSA
Trigger: AGCGGAGAAGTCAGGTTCCAAGGAGCAGGGACCTCG...GAGTATGGCCTGTGCTCCTCTGGCTGGTAAACTGGAGTTTTTGTCTGGTTTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR CAA 90 bp CACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCTTCTGCAGCGGTTCATaGCTGAAGTCTGTCTGTACT +
Preference number: 5 (lower is better)
Translates to: HRRPQITATGVLFVPLPTFCSGS*LKSVCT
Trigger: AGTACAGACAGACTTCAGCAATGAACCGCTGCAGAA...GGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp CAGAGTGATCGAGAGGCCACCGCCAAGTGTGAGCTGAGGGACAAGCAGTACCCATTCTGCAGCGGTTCATaGCTGAAGTCTGTCTGTACT +
Preference number: 5 (lower is better)
Translates to: QSDREATAKCELRDKQYPFCSGS*LKSVCT
Trigger: AGTACAGACAGACTTCAGCAATGAACCGCTGCAGAA...TGGGTACTGCTTGTCCCTCAGCTCACACTTGGCGGTGGCCTCTCGATCACTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp CCTACAGGTAACATAACAAGGCCCTGTGCCCATCAGTGGGGTCATGGGGCCTGTTCCCCTTCATGGGCTTaGAACTCCAGAACTTTCTCC +
Preference number: 5 (lower is better)
Translates to: PTGNITRPCAHQWGHGACSPSWA*NSRTFS
Trigger: GGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGA...ACAGGCCCCATGACCCCACTGATGGGCACAGGGCCTTGTTATGTTACCTGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS CCA 90 bp AGAAGCCATACAGGAACACTCCGCCGTGAAGGCAGCAGGTGCAACTaGCAACGACTATCCACAGCCACAGAGAAAAGAGCAGTTTCATGG +
Preference number: 5 (lower is better)
Translates to: RSHTGTLRREGSRCN*QRLSTATEKRAVSW
Trigger: CCATGAAACTGCTCTTTTCTCTGTGGCTGTGGATAGTCGTTGCCAGTTGCACCTGCTGCCTTCACGGCGGAGTGTTCCTGTATGGCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS-3UTR CAA 90 bp GCTTTGAGGGACGGCTGCAAACCATCTTCCGAGTCCTCCTGCAGTCTCAGCCTGTCCAAATTCTTTACTTaGAGTTCAACCCCTTCGGGG +
Preference number: 5 (lower is better)
Translates to: ALRDGCKPSSESSCSLSLSKFFT*SSTPSG
Trigger: CCCCGAAGGGGTTGAACTCAAAGTAAAGAATTTGGA...CAGGCTGAGACTGCAGGAGGACTCGGAAGATGGTTTGCAGCCGTCCCTCAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR CAA 90 bp CACAGAAGGCCACAGATCACCGCTACCGGGGTCCTCTTTGTGCCTCTTCCTACCTCCAAATTCTTTACTTaGAGTTCAACCCCTTCGGGG +
Preference number: 5 (lower is better)
Translates to: HRRPQITATGVLFVPLPTSKFFT*SSTPSG
Trigger: CCCCGAAGGGGTTGAACTCAAAGTAAAGAATTTGGA...GGTAGGAAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS CCA 90 bp AACTGGCAACGACTATCCACAGCCACAGAGAAAAGAGCAGTTTCATaGGGCCCAAGGAGCTTTGGACCACAACCCTTCTCAGGTAGAAAG +
Preference number: 5 (lower is better)
Translates to: NWQRLSTATEKRAVS*GPRSFGPQPFSGRK
Trigger: CTTTCTACCTGAGAAGGGTTGTGGTCCAAAGCTCCTTGGGCCCCATGAAACTGCTCTTTTCTCTGTGGCTGTGGATAGTCGTTGCCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS CCA 90 bp AGCTTGCCATCAGGACCCAAAGTCAAATCTCCAATCTCCCCTTCATaGGCTTTGAACTCCAGAACTTTCTCCAGGCTAGGTACCTTCCAG +
Preference number: 5 (lower is better)
Translates to: SLPSGPKVKSPISPS*ALNSRTFSRLGTFQ
Trigger: CTGGAAGGTACCTAGCCTGGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGAGATTGGAGATTTGACTTTGGGTCCTGATGGCAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp GGATCTCACAGGCAAGATCTGACCTGTGTGCCCATGCTCATAGGAGAGGCACATAGGGTGTTATCATGGTaGAAGCACACAACTTTCTGC +
Preference number: 5 (lower is better)
Translates to: GSHRQDLTCVPMLIGEAHRVLSW*KHTTFC
Trigger: GCAGAAAGTTGTGTGCTTCAACCATGATAACACCCT...ATGTGCCTCTCCTATGAGCATGGGCACACAGGTCAGATCTTGCCTGTGAGATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR CAA 90 bp AAATATCAACTCTTCCTGCCTAACGAGCTGAGGTTCCCTTTCCTCAGGCTGCAGTCCCCTTCATGGGCTTaGAACTCCAGAACTTTCTCC +
Preference number: 5 (lower is better)
Translates to: KYQLFLPNELRFPFLRLQSPSWA*NSRTFS
Trigger: GGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGA...CTGCAGCCTGAGGAAAGGGAACCTCAGCTCGTTAGGCAGGAAGAGTTGATATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS GCA 90 bp CCAGTGGCAAGCAGGGTGTTATCATGGTTGAAGCACACAACTTTCTaGAGCGGTTCATTGCTGAAGTCTGTCTGTACTGCCTCCAAATTC +
Preference number: 5 (lower is better)
Translates to: PVASRVLSWLKHTTF*SGSLLKSVCTASKF
Trigger: GAATTTGGAGGCAGTACAGACAGACTTCAGCAATGAACCGCTGCAGAAAGTTGTGTGCTTCAACCATGATAACACCCTGCTTGCCACTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp TACAGGAGCTGGAGTGACCCGAATGAGCTTCAGGGTGATGCATTTGGACAAGGTAGGGTGTTATCATGGTaGAAGCACACAACTTTCTGC +
Preference number: 5 (lower is better)
Translates to: YRSWSDPNELQGDAFGQGRVLSW*KHTTFC
Trigger: GCAGAAAGTTGTGTGCTTCAACCATGATAACACCCT...ACCTTGTCCAAATGCATCACCCTGAAGCTCATTCGGGTCACTCCAGCTCCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR CAA 90 bp GCTCTTGGGCATCTTCACATGCTTCTAGAAAAGGAAGAGCTGAGCTCTGGAGCCAGGGTGTTATCATGGTaGAAGCACACAACTTTCTGC +
Preference number: 5 (lower is better)
Translates to: ALGHLHMLLEKEELSSGARVLSW*KHTTFC
Trigger: GCAGAAAGTTGTGTGCTTCAACCATGATAACACCCT...GGCTCCAGAGCTCAGCTCTTCCTTTTCTAGAAGCATGTGAAGATGCCCAAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS GCA 90 bp GCACACAACTTTCTGCAGCGGTTCATTGCTGAAGTCTGTCTGTACTaGCTCCAAATTCTTTACTTTGAGTTCAACCCCTTCGGGGTGAAC +
Preference number: 5 (lower is better)
Translates to: AHNFLQRFIAEVCLY*LQILYFEFNPFGVN
Trigger: GTTCACCCCGAAGGGGTTGAACTCAAAGTAAAGAATTTGGAGGCAGTACAGACAGACTTCAGCAATGAACCGCTGCAGAAAGTTGTGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS-3UTR CAA 90 bp ACCAAACCAGACAAAAACTCCAGTTTACCAGCCAGAGGAGCACAGGCCATACTCTCCAAATTCTTTACTTaGAGTTCAACCCCTTCGGGG +
Preference number: 5 (lower is better)
Translates to: TKPDKNSSLPARGAQAILSKFFT*SSTPSG
Trigger: CCCCGAAGGGGTTGAACTCAAAGTAAAGAATTTGGA...GAGTATGGCCTGTGCTCCTCTGGCTGGTAAACTGGAGTTTTTGTCTGGTTTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
CDS-3UTR CAA 90 bp ATTAAATATCAACTCTTCCTGCCTAACGAGCTGAGGTTCCCTTTCCTCAGGCTGTCCCCTTCATGGGCTTaGAACTCCAGAACTTTCTCC +
Preference number: 5 (lower is better)
Translates to: IKYQLFLPNELRFPFLRLSPSWA*NSRTFS
Trigger: GGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGA...CAGCCTGAGGAAAGGGAACCTCAGCTCGTTAGGCAGGAAGAGTTGATATTTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS CAA 90 bp GTCTTGGCAGCTCCTCCTCCGCCCGCAGCGATGAGCAGCCCAGTCTaGGGGTCTATCCGAAGCGCGTACAACGGGAACGGGGCCCGGTAC +
Preference number: 6 (lower is better)
Translates to: VLAAPPPPAAMSSPV*GSIRSAYNGNGARY
Trigger: GTACCGGGCCCCGTTCCCGTTGTACGCGCTTCGGATAGACCCCAAGACTGGGCTGCTCATCGCTGCGGGCGGAGGAGGAGCTGCCAAGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS TCA 72 bp TGCCGGTCTTGGCAGCTCCTCCTCCGCCCGCAGCGATaGGCAGCCCAGTCTTGGGGTCTATCCGAAGCGCGT +
Preference number: 6 (lower is better)
Translates to: CRSWQLLLRPQR*AAQSWGLSEAR
Trigger: ACGCGCTTCGGATAGACCCCAAGACTGGGCTGCTCATCGCTGCGGGCGGAGGAGGAGCTGCCAAGACCGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CAA 72 bp GCTCCTCCTCCGCCCGCAGCGATGAGCAGCCCAGTCTaGGGGTCTATCCGAAGCGCGTACAACGGGAACGGG +
Preference number: 6 (lower is better)
Translates to: APPPPAAMSSPV*GSIRSAYNGNG
Trigger: CCCGTTCCCGTTGTACGCGCTTCGGATAGACCCCAAGACTGGGCTGCTCATCGCTGCGGGCGGAGGAGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS TCA 72 bp GGGGCTGACGTAGGCGCTTGTGGGGTATCTGCACTGTaGAGAGTCGCAGCCCACCGAGCTGATCTGGAACCT +
Preference number: 6 (lower is better)
Translates to: GADVGACGVSAL*RVAAHRADLEP
Trigger: AGGTTCCAGATCAGCTCGGTGGGCTGCGACTCTTCACAGTGCAGATACCCCACAAGCGCCTACGTCAGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS CCA 72 bp CTGCACTGTGAAGAGTCGCAGCCCACCGAGCTGATCTaGAACCTGCCCAAACCTGCAGGCCTGGTAGCGGTA +
Preference number: 6 (lower is better)
Translates to: LHCEESQPTELI*NLPKPAGLVAV
Trigger: TACCGCTACCAGGCCTGCAGGTTTGGGCAGGTTCCAGATCAGCTCGGTGGGCTGCGACTCTTCACAGTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS TCA 72 bp AGCGCCAAATTCATGGTGGCCCGTGTCTCCGTGTCATaGGAGTGCAGCAAGGAAGCGCTCAGGCACCCGTTG +
Preference number: 6 (lower is better)
Translates to: SAKFMVARVSVS*ECSKEALRHPL
Trigger: CAACGGGTGCCTGAGCGCTTCCTTGCTGCACTCTCATGACACGGAGACACGGGCCACCATGAATTTGGCGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS GCA 72 bp CCCTTCGGGGTGAACTTGTGCTCCCGATTTCTTCTCTaGTGGAGGAGCCCCCTTTCTCTGTCGAGGTCCCTG +
Preference number: 6 (lower is better)
Translates to: PFGVNLCSRFLL*WRSPLSLSRSL
Trigger: CAGGGACCTCGACAGAGAAAGGGGGCTCCTCCAGCAGAGAAGAAATCGGGAGCACAAGTTCACCCCGAAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS CAA 72 bp AGCTGCAGAAAATGCACGCCATTCTTTATGCCGGTCTaGGCAGCTCCTCCTCCGCCCGCAGCGATGAGCAGC +
Preference number: 6 (lower is better)
Translates to: SCRKCTPFFMPV*AAPPPPAAMSS
Trigger: GCTGCTCATCGCTGCGGGCGGAGGAGGAGCTGCCAAGACCGGCATAAAGAATGGCGTGCATTTTCTGCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CAA 90 bp ATCAGCTCTAGCTGCAGAAAATGCACGCCATTCTTTATGCCGGTCTaGGCAGCTCCTCCTCCGCCCGCAGCGATGAGCAGCCCAGTCTTG +
Preference number: 6 (lower is better)
Translates to: ISSSCRKCTPFFMPV*AAPPPPAAMSSPVL
Trigger: CAAGACTGGGCTGCTCATCGCTGCGGGCGGAGGAGGAGCTGCCAAGACCGGCATAAAGAATGGCGTGCATTTTCTGCAGCTAGAGCTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS GCA 72 bp TCAGCTCTAGCTGCAGAAAATGCACGCCATTCTTTATaGCGGTCTTGGCAGCTCCTCCTCCGCCCGCAGCGA +
Preference number: 6 (lower is better)
Translates to: SALAAENARHSL*RSWQLLLRPQR
Trigger: TCGCTGCGGGCGGAGGAGGAGCTGCCAAGACCGGCATAAAGAATGGCGTGCATTTTCTGCAGCTAGAGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CCA 72 bp TTCGGGGTGAACTTGTGCTCCCGATTTCTTCTCTGCTaGAGGAGCCCCCTTTCTCTGTCGAGGTCCCTGCTC +
Preference number: 6 (lower is better)
Translates to: FGVNLCSRFLLC*RSPLSLSRSLL
Trigger: GAGCAGGGACCTCGACAGAGAAAGGGGGCTCCTCCAGCAGAGAAGAAATCGGGAGCACAAGTTCACCCCGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS CAA 72 bp GGAGGAGCCCCCTTTCTCTGTCGAGGTCCCTGCTCCTaGGAACCTGACTTCTCCGCTTTACTGCCCTTCTGT +
Preference number: 6 (lower is better)
Translates to: GGAPFLCRGPCS*EPDFSALLPFC
Trigger: ACAGAAGGGCAGTAAAGCGGAGAAGTCAGGTTCCAAGGAGCAGGGACCTCGACAGAGAAAGGGGGCTCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CCA 72 bp CGGCAGCAAGAATGTCACCAGCAAGCGCCAAATTCATaGTGGCCCGTGTCTCCGTGTCATGAGAGTGCAGCA +
Preference number: 6 (lower is better)
Translates to: RQQECHQQAPNS*WPVSPCHESAA
Trigger: TGCTGCACTCTCATGACACGGAGACACGGGCCACCATGAATTTGGCGCTTGCTGGTGACATTCTTGCTGCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CCA 72 bp GAGGAGCCCCCTTTCTCTGTCGAGGTCCCTGCTCCTTaGAACCTGACTTCTCCGCTTTACTGCCCTTCTGTT +
Preference number: 6 (lower is better)
Translates to: EEPPFSVEVPAP*NLTSPLYCPSV
Trigger: AACAGAAGGGCAGTAAAGCGGAGAAGTCAGGTTCCAAGGAGCAGGGACCTCGACAGAGAAAGGGGGCTCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS TCA 72 bp CCCCTTTCTCTGTCGAGGTCCCTGCTCCTTGGAACCTaGCTTCTCCGCTTTACTGCCCTTCTGTTGATGGAC +
Preference number: 6 (lower is better)
Translates to: PLSLSRSLLLGT*LLRFTALLLMD
Trigger: GTCCATCAACAGAAGGGCAGTAAAGCGGAGAAGTCAGGTTCCAAGGAGCAGGGACCTCGACAGAGAAAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS TCA 72 bp GGAGAGAGAAAGCTATGTAGATGGCGACAGAGCCAGTaGCCGTGCCTAGGCCTAGGAAGGTACCCGAATCAC +
Preference number: 6 (lower is better)
Translates to: GERKLCRWRQSQ*PCLGLGRYPNH
Trigger: GTGATTCGGGTACCTTCCTAGGCCTAGGCACGGTCACTGGCTCTGTCGCCATCTACATAGCTTTCTCTCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CCA 72 bp CAGCAAGAATGTCACCAGCAAGCGCCAAATTCATGGTaGCCCGTGTCTCCGTGTCATGAGAGTGCAGCAAGG +
Preference number: 6 (lower is better)
Translates to: QQECHQQAPNSW*PVSPCHESAAR
Trigger: CCTTGCTGCACTCTCATGACACGGAGACACGGGCCACCATGAATTTGGCGCTTGCTGGTGACATTCTTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CCA 72 bp GAACACTCCCTGACACTGAGGCAGGAAATGACCTCATaGCCACAGGATCTGGTCCGAAGAGGCAAGAAGGTG +
Preference number: 6 (lower is better)
Translates to: EHSLTLRQEMTS*PQDLVRRGKKV
Trigger: CACCTTCTTGCCTCTTCGGACCAGATCCTGTGGCCATGAGGTCATTTCCTGCCTCAGTGTCAGGGAGTGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201002.4
CDS TCA 72 bp CATGAGAGTGCAGCAAGGAAGCGCTCAGGCACCCGTTaGTCAGCTCTAGCTGCAGAAAATGCACGCCATTCT +
Preference number: 6 (lower is better)
Translates to: HESAARKRSGTR*SALAAENARHS
Trigger: AGAATGGCGTGCATTTTCTGCAGCTAGAGCTGATCAACGGGTGCCTGAGCGCTTCCTTGCTGCACTCTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CCA 72 bp TGGAACCTGCCCAAACCTGCAGGCCTGGTAGCGGTATaGTGTATTAGAAGAGGCTGGTCCATTCTCTTGCCA +
Preference number: 6 (lower is better)
Translates to: WNLPKPAGLVAV*CIRRGWSILLP
Trigger: TGGCAAGAGAATGGACCAGCCTCTTCTAATACACCATACCGCTACCAGGCCTGCAGGTTTGGGCAGGTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS TCA 72 bp GGTCCATTCTCTTGCCACTGTAGCTGTGTCACCAGTTaGTCCTTCTGCCACACAGAGGCCTTAAAGTCCCAG +
Preference number: 6 (lower is better)
Translates to: GPFSCHCSCVTS*SFCHTEALKSQ
Trigger: CTGGGACTTTAAGGCCTCTGTGTGGCAGAAGGATCAACTGGTGACACAGCTACAGTGGCAAGAGAATGGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS GCA 72 bp AAGGAAGCGCTCAGGCACCCGTTGATCAGCTCTAGCTaGAGAAAATGCACGCCATTCTTTATGCCGGTCTTG +
Preference number: 6 (lower is better)
Translates to: KEALRHPLISSS*RKCTPFFMPVL
Trigger: CAAGACCGGCATAAAGAATGGCGTGCATTTTCTGCAGCTAGAGCTGATCAACGGGTGCCTGAGCGCTTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS GCA 72 bp GTCCCTGCTCCTTGGAACCTGACTTCTCCGCTTTACTaGCCTTCTGTTGATGGACCTGGAAACGAAGAAGCT +
Preference number: 6 (lower is better)
Translates to: VPAPWNLTSPLY*PSVDGPGNEEA
Trigger: AGCTTCTTCGTTTCCAGGTCCATCAACAGAAGGGCAGTAAAGCGGAGAAGTCAGGTTCCAAGGAGCAGGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074840.12
ENSMUST00000202567.2
CDS CCA 72 bp CGACTATCCACAGCCACAGAGAAAAGAGCAGTTTCATaGGGCCCAAGGAGCTTTGGACCACAACCCTTCTCA +
Preference number: 6 (lower is better)
Translates to: RLSTATEKRAVS*GPRSFGPQPFS
Trigger: TGAGAAGGGTTGTGGTCCAAAGCTCCTTGGGCCCCATGAAACTGCTCTTTTCTCTGTGGCTGTGGATAGTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS CAA 90 bp CCACAGCCACAGAGAAAAGAGCAGTTTCATGGGGCCCAAGGAGCTTaGGACCACAACCCTTCTCAGGTAGAAAGGTCACATCTGTTACCA +
Preference number: 6 (lower is better)
Translates to: PQPQRKEQFHGAQGA*DHNPSQVERSHLLP
Trigger: TGGTAACAGATGTGACCTTTCTACCTGAGAAGGGTTGTGGTCCAAAGCTCCTTGGGCCCCATGAAACTGCTCTTTTCTCTGTGGCTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS CAA 72 bp ATTCTTTACTTTGAGTTCAACCCCTTCGGGGTGAACTaGTGCTCCCGATTTCTTCTCTGCTGGAGGAGCCCC +
Preference number: 6 (lower is better)
Translates to: ILYFEFNPFGVN*CSRFLLCWRSP
Trigger: GGGGCTCCTCCAGCAGAGAAGAAATCGGGAGCACAAGTTCACCCCGAAGGGGTTGAACTCAAAGTAAAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS CAA 90 bp CCATCAGGACCCAAAGTCAAATCTCCAATCTCCCCTTCATGGGCTTaGAACTCCAGAACTTTCTCCAGGCTAGGTACCTTCCAGACACGA +
Preference number: 6 (lower is better)
Translates to: PSGPKVKSPISPSWA*NSRTFSRLGTFQTR
Trigger: TCGTGTCTGGAAGGTACCTAGCCTGGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGAGATTGGAGATTTGACTTTGGGTCCTGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS GCA 72 bp CCTTCTCAGGTAGAAAGGTCACATCTGTTACCACAATaGCATGGGCCTCCTTCACATAATACAGGCGCTGGA +
Preference number: 6 (lower is better)
Translates to: PSQVERSHLLPQ*HGPPSHNTGAG
Trigger: TCCAGCGCCTGTATTATGTGAAGGAGGCCCATGGCATTGTGGTAACAGATGTGACCTTTCTACCTGAGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS CAA 72 bp CAGAGAAAAGAGCAGTTTCATGGGGCCCAAGGAGCTTaGGACCACAACCCTTCTCAGGTAGAAAGGTCACAT +
Preference number: 6 (lower is better)
Translates to: QRKEQFHGAQGA*DHNPSQVERSH
Trigger: ATGTGACCTTTCTACCTGAGAAGGGTTGTGGTCCAAAGCTCCTTGGGCCCCATGAAACTGCTCTTTTCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074840.12
CDS GCA 72 bp AGCAGGGTGTTATCATGGTTGAAGCACACAACTTTCTaGAGCGGTTCATTGCTGAAGTCTGTCTGTACTGCC +
Preference number: 6 (lower is better)
Translates to: SRVLSWLKHTTF*SGSLLKSVCTA
Trigger: GGCAGTACAGACAGACTTCAGCAATGAACCGCTGCAGAAAGTTGTGTGCTTCAACCATGATAACACCCTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS CCA 72 bp TCAGGACCCAAAGTCAAATCTCCAATCTCCCCTTCATaGGCTTTGAACTCCAGAACTTTCTCCAGGCTAGGT +
Preference number: 6 (lower is better)
Translates to: SGPKVKSPISPS*ALNSRTFSRLG
Trigger: ACCTAGCCTGGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGAGATTGGAGATTTGACTTTGGGTCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS CAA 72 bp CCCAAAGTCAAATCTCCAATCTCCCCTTCATGGGCTTaGAACTCCAGAACTTTCTCCAGGCTAGGTACCTTC +
Preference number: 6 (lower is better)
Translates to: PKVKSPISPSWA*NSRTFSRLGTF
Trigger: GAAGGTACCTAGCCTGGAGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGAGATTGGAGATTTGACTTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201002.4
ENSMUST00000202567.2
CDS TCA 72 bp TCCAAATTCTTTACTTTGAGTTCAACCCCTTCGGGGTaGACTTGTGCTCCCGATTTCTTCTCTGCTGGAGGA +
Preference number: 6 (lower is better)
Translates to: SKFFTLSSTPSG*TCAPDFFSAGG
Trigger: TCCTCCAGCAGAGAAGAAATCGGGAGCACAAGTTCACCCCGAAGGGGTTGAACTCAAAGTAAAGAATTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2
CDS GCA 72 bp TTTCTGCAGCGGTTCATTGCTGAAGTCTGTCTGTACTaGCTCCAAATTCTTTACTTTGAGTTCAACCCCTTC +
Preference number: 6 (lower is better)
Translates to: FLQRFIAEVCLY*LQILYFEFNPF
Trigger: GAAGGGGTTGAACTCAAAGTAAAGAATTTGGAGGCAGTACAGACAGACTTCAGCAATGAACCGCTGCAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074840.12
ENSMUST00000201821.4
ENSMUST00000202567.2