Pregenerated sensors for PRDX4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025289

Ensembl transcript IDs: ENSMUST00000026328.11, ENSMUST00000130349.3

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	GGCTTGGAGATCTTGGCTTTGCTTAGATGCAGGGAGTaGTCCGCGACTGAAACCCGGGACGCCTCCCCGGGG	+
Preference number: 6 (lower is better) Translates to: GLEILALLRCRE*SATETRDASPG Trigger: CCCCGGGGAGGCGTCCCGGGTTTCAGTCGCGGATCACTCCCTGCATCTAAGCAAAGCCAAGATCTCCAAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026328.11
CDS CCA 72 bp	TCCTTCCCTAGCCTCCTGCTCAACATGGAACGGAAGTaGGACCCTGGGAGTTCGGATATGAGATCCAGAGAC	+
Preference number: 6 (lower is better) Translates to: SFPSLLLNMERK*DPGSSDMRSRD Trigger: GTCTCTGGATCTCATATCCGAACTCCCAGGGTCCCACTTCCGTTCCATGTTGAGCAGGAGGCTAGGGAAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130349.3
CDS GCA 72 bp	CTTCCCAATAAGGTGCTGGCTTGGAGATCTTGGCTTTaGTTAGATGCAGGGAGTGATCCGCGACTGAAACCC	+
Preference number: 6 (lower is better) Translates to: LPNKVLAWRSWL*LDAGSDPRLKP Trigger: GGGTTTCAGTCGCGGATCACTCCCTGCATCTAAGCAAAGCCAAGATCTCCAAGCCAGCACCTTATTGGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026328.11
CDS TCA 72 bp	CTGGAAGGCTTGAACCAAACGCAGTGTCTCGTCCACTaGTCTTCCGACAGGAAGGTCATTCAGAGTAATCTG	+
Preference number: 6 (lower is better) Translates to: LEGLNQTQCLVH*SSDRKVIQSNL Trigger: CAGATTACTCTGAATGACCTTCCTGTCGGAAGATCAGTGGACGAGACACTGCGTTTGGTTCAAGCCTTCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026328.11 ENSMUST00000130349.3
CDS CAA 72 bp	AGAAAGAAGTGGAATCCTTATTGGCCCCAGTCCTCCTaGTCTTCGAGGGGTATTAATCCAGGCCAAGTGGGT	+
Preference number: 6 (lower is better) Translates to: RKKWNPYWPQSS*SSRGINPGQVG Trigger: ACCCACTTGGCCTGGATTAATACCCCTCGAAGACAAGGAGGACTGGGGCCAATAAGGATTCCACTTCTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026328.11 ENSMUST00000130349.3
CDS CCA 72 bp	CTGATGGTTCAGGTCAGAAAGAAGTGGAATCCTTATTaGCCCCAGTCCTCCTTGTCTTCGAGGGGTATTAAT	+
Preference number: 6 (lower is better) Translates to: LMVQVRKKWNPY*PQSSLSSRGIN Trigger: ATTAATACCCCTCGAAGACAAGGAGGACTGGGGCCAATAAGGATTCCACTTCTTTCTGACCTGAACCATCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026328.11 ENSMUST00000130349.3
CDS TCA 72 bp	CTTCGAGGGGTATTAATCCAGGCCAAGTGGGTAAACTaGGAGTCAACAGAGCATGCTACCACTTCAGTATTT	+
Preference number: 6 (lower is better) Translates to: LRGVLIQAKWVN*ESTEHATTSVF Trigger: AAATACTGAAGTGGTAGCATGCTCTGTTGACTCTCAGTTTACCCACTTGGCCTGGATTAATACCCCTCGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026328.11 ENSMUST00000130349.3

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