Pregenerated sensors for PRDX3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024997Ensembl transcript IDs: ENSMUST00000025961.7
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGTTCAGGGCAGGCTAAGGGAAAGAATGCTTACCCTCTAAGGACATaGTCCAAGAAATGGGGGCCAAGCACTCGGGGAGAATTGGTTAGC | + |
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Preference number: 1 (lower is better) Translates to: GSGQAKGKNAYPLRT*SKKWGPSTRGELVS Trigger: GCTAACCAATTCTCCCCGAGTGCTTGGCCCCCATTTCTTGGATCATGTCCTTAGAGGGTAAGCATTCTTTCCCTTAGCCTGCCCTGAACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| 3UTR GCA 90 bp | GCTGGTGCTATGTGCTACTTCATTTCACCAAGTACTGGCACTATGTaGTACTTCACTGTAGACCAAGGTTCAGGGCAGGCTAAGGGAAAG | + |
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Preference number: 1 (lower is better) Translates to: AGAMCYFISPSTGTM*YFTVDQGSGQAKGK Trigger: CTTTCCCTTAGCCTGCCCTGAACCTTGGTCTACAGTGAAGTAGCACATAGTGCCAGTACTTGGTGAAATGAAGTAGCACATAGCACCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| 3UTR CCA 90 bp | TCCATTAAGTGCTGGTGCTATGTGCTACTTCATTTCACCAAGTACTaGCACTATGTGCTACTTCACTGTAGACCAAGGTTCAGGGCAGGC | + |
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Preference number: 1 (lower is better) Translates to: SIKCWCYVLLHFTKY*HYVLLHCRPRFRAG Trigger: GCCTGCCCTGAACCTTGGTCTACAGTGAAGTAGCACATAGTGCCAGTACTTGGTGAAATGAAGTAGCACATAGCACCAGCACTTAATGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| 3UTR-3UTR GCA 90 bp | TATGGATTAGACATAGTCCTTCATGATTATACCTCTTCAATACCTCAGAACACATCCATTAAGTGCTGGTaGTATGTGCTACTTCATTTC | + |
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Preference number: 2 (lower is better) Translates to: YGLDIVLHDYTSSIPQNTSIKCW*YVLLHF Trigger: GAAATGAAGTAGCACATAGCACCAGCACTTAATGGA...TGTGTTCTGAGGTATTGAAGAGGTATAATCATGAAGGACTATGTCTAATCCATA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| 3UTR TCA 72 bp | CAGGCTAAGGGAAAGAATGCTTACCCTCTAAGGACATaGTCCAAGAAATGGGGGCCAAGCACTCGGGGAGAA | + |
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Preference number: 3 (lower is better) Translates to: QAKGKNAYPLRT*SKKWGPSTRGE Trigger: TTCTCCCCGAGTGCTTGGCCCCCATTTCTTGGATCATGTCCTTAGAGGGTAAGCATTCTTTCCCTTAGCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| 3UTR CCA 72 bp | GATCCAAGAAATGGGGGCCAAGCACTCGGGGAGAATTaGTTAGCCATCAAGAAGTCCCTAGTAAGAGCAGCT | + |
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Preference number: 3 (lower is better) Translates to: DPRNGGQALGEN*LAIKKSLVRAA Trigger: AGCTGCTCTTACTAGGGACTTCTTGATGGCTAACCAATTCTCCCCGAGTGCTTGGCCCCCATTTCTTGGATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| 3UTR CCA 72 bp | TGCTGGTGCTATGTGCTACTTCATTTCACCAAGTACTaGCACTATGTGCTACTTCACTGTAGACCAAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: CWCYVLLHFTKY*HYVLLHCRPRF Trigger: GAACCTTGGTCTACAGTGAAGTAGCACATAGTGCCAGTACTTGGTGAAATGAAGTAGCACATAGCACCAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| 3UTR GCA 72 bp | CTTGATCAGAAGCTTCCATTAAGTGCTGGTGCTATGTaGTACTTCATTTCACCAAGTACTGGCACTATGTGC | + |
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Preference number: 3 (lower is better) Translates to: LDQKLPLSAGAM*YFISPSTGTMC Trigger: GCACATAGTGCCAGTACTTGGTGAAATGAAGTAGCACATAGCACCAGCACTTAATGGAAGCTTCTGATCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| 3UTR-3UTR CAA 90 bp | TACAAAGCCTGTGGAGCAGTACTTATAAACACAAACATAATGAGGTTTTGCCATATAATCTTCAAGGCATaGGAAGGATTCCAGCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: YKACGAVLINTNIMRFCHIIFKA*EGFQLG Trigger: CCCCAGCTGGAATCCTTCCAATGCCTTGAAGATTAT...ATGGCAAAACCTCATTATGTTTGTGTTTATAAGTACTGCTCCACAGGCTTTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| 3UTR CCA 72 bp | AGAGAGCCTGAACCTGTCTTAAAATTACAAAGCCTGTaGAGCAGTACTTATAAACACAAACATAATGAGGTT | + |
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Preference number: 3 (lower is better) Translates to: REPEPVLKLQSL*SSTYKHKHNEV Trigger: AACCTCATTATGTTTGTGTTTATAAGTACTGCTCCACAGGCTTTGTAATTTTAAGACAGGTTCAGGCTCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| 3UTR TCA 72 bp | GAAGAAAATGACTTATGGATTAGACATAGTCCTTCATaGTTATACCTCTTCAATACCTCAGAACACACAAGG | + |
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Preference number: 3 (lower is better) Translates to: EENDLWIRHSPS*LYLFNTSEHTR Trigger: CCTTGTGTGTTCTGAGGTATTGAAGAGGTATAATCATGAAGGACTATGTCTAATCCATAAGTCATTTTCTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| CDS-3UTR TCA 90 bp | GCACTCGGGGAGAATTGGTTAGCCATCAAGAAGTCCCTAGTAAGAGCAGCTATGAGGCCTAAGAACTGTTaGGGCAGAAATACTCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: ALGENWLAIKKSLVRAAMRPKNC*GRNTPG Trigger: TCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCT...CATAGCTGCTCTTACTAGGGACTTCTTGATGGCTAACCAATTCTCCCCGAGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| CDS-3UTR TCA 90 bp | AAGCTTCCATTAAGTGCTGGTGCTATGTGCTACTTCATTTCACCAAGTACTGGCACTGGTGCTAAAGGCTaGCTTTCCTTGGGCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: KLPLSAGAMCYFISPSTGTGAKG*LSLGRG Trigger: GCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCAGT...GCCAGTACTTGGTGAAATGAAGTAGCACATAGCACCAGCACTTAATGGAAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| CDS-3UTR GCA 90 bp | AAGCTTCCATTAAGTGCTGGTGCTATGTGCTACTTCATTTCACCAAGTACTGGCGAAGAGACCTCTGAGTaGAATGCCAGCACTTTCCAA | + |
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Preference number: 4 (lower is better) Translates to: KLPLSAGAMCYFISPSTGEETSE*NASTFQ Trigger: TTGGAAAGTGCTGGCATTGCACTCAGAGGTCTCTTC...GCCAGTACTTGGTGAAATGAAGTAGCACATAGCACCAGCACTTAATGGAAGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| CDS-3UTR CCA 90 bp | ATGAGGTTTTGCCATTCTATAAATAATCTTCAAGGCATTGGAAGGATTCCAGCTAAGGCTGACTTTCCTTaGGCAGAGGCAGACCACAGT | + |
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Preference number: 4 (lower is better) Translates to: MRFCHSINNLQGIGRIPAKADFP*AEADHS Trigger: ACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTT...AGCTGGAATCCTTCCAATGCCTTGAAGATTATTTATAGAATGGCAAAACCTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| CDS-3UTR CCA 90 bp | ATGAGGTTTTGCCATTCTATAAATAATCTTCAAGGCATTGGAAGGATTCCAGCTGTGACAGCAGGGGTGTaGAAAGAGGAACTGGTGCTA | + |
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Preference number: 4 (lower is better) Translates to: MRFCHSINNLQGIGRIPAVTAGV*KEELVL Trigger: TAGCACCAGTTCCTCTTTCCACACCCCTGCTGTCAC...AGCTGGAATCCTTCCAATGCCTTGAAGATTATTTATAGAATGGCAAAACCTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| CDS TCA 90 bp | CTAAGAACTGTTGAGGCAGAAATACTCCGGGAAATAGCACTTGCATaGCGAGCAACCGAGGACCAGAGCAACCTTCCCGCAGCTGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: LRTVEAEILREIALA*RATEDQSNLPAAAA Trigger: GGCGGCAGCTGCGGGAAGGTTGCTCTGGTCCTCGGTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| CDS-3UTR CAA 90 bp | ACTCGGGGAGAATTGGTTAGCCATCAAGAAGTCCCTAGTAAGAGCAGCTATGGACCCACCGGAAGGTCGTaGACACTCAGGTGCTTGACG | + |
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Preference number: 5 (lower is better) Translates to: TRGELVSHQEVPSKSSYGPTGRS*TLRCLT Trigger: CGTCAAGCACCTGAGTGTCAACGACCTTCCGGTGGG...TCCATAGCTGCTCTTACTAGGGACTTCTTGATGGCTAACCAATTCTCCCCGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| CDS TCA 90 bp | GTCTGTCAAACAGGTTCTTCTAGAAGCAACAGGCCTAAGAACTGTTaGGGCAGAAATACTCCGGGAAATAGCACTTGCATGACGAGCAAC | + |
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Preference number: 5 (lower is better) Translates to: VCQTGSSRSNRPKNC*GRNTPGNSTCMTSN Trigger: GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| CDS TCA 72 bp | GTTGAGGCAGAAATACTCCGGGAAATAGCACTTGCATaGCGAGCAACCGAGGACCAGAGCAACCTTCCCGCA | + |
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Preference number: 6 (lower is better) Translates to: VEAEILREIALA*RATEDQSNLPA Trigger: TGCGGGAAGGTTGCTCTGGTCCTCGGTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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| CDS TCA 72 bp | ACAGGTTCTTCTAGAAGCAACAGGCCTAAGAACTGTTaGGGCAGAAATACTCCGGGAAATAGCACTTGCATG | + |
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Preference number: 6 (lower is better) Translates to: TGSSRSNRPKNC*GRNTPGNSTCM Trigger: CATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025961.7 |
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