Pregenerated sensors for PRDX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005161Ensembl transcript IDs: ENSMUST00000005292.15, ENSMUST00000109733.8, ENSMUST00000109734.8, ENSMUST00000164807.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATCCCTCCAGGCCTAGTAATTATTTGGTCTCACTGTGTCCCACCATaGTCAGACCATGGCGTGAATGAGGTAATGCCTCCACCTTGTGGT | + |
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Preference number: 1 (lower is better) Translates to: IPPGLVIIWSHCVPP*SDHGVNEVMPPPCG Trigger: ACCACAAGGTGGAGGCATTACCTCATTCACGCCATGGTCTGAGCATGGTGGGACACAGTGAGACCAAATAATTACTAGGCCTGGAGGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR CCA 90 bp | TCTGGCGTTAAAGAGGGTTGTAAGCAACTATGTAAGCTCCAGGAATaGAACCTGGATCTTCAGGAGAAACATAAAGAGCTCTTAAAGAAT | + |
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Preference number: 1 (lower is better) Translates to: SGVKEGCKQLCKLQE*NLDLQEKHKELLKN Trigger: ATTCTTTAAGAGCTCTTTATGTTTCTCCTGAAGATCCAGGTTCCATTCCTGGAGCTTACATAGTTGCTTACAACCCTCTTTAACGCCAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR TCA 90 bp | CATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATCTGGAGGTTGGGGCACAGGTaGAATCCAAGCTTCAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: HVHVHAWCWRIRRRCWIWRLGHR*NPSFRL Trigger: GAGCCTGAAGCTTGGATTTCACCTGTGCCCCAACCT...CCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR TCA 90 bp | CGTGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGGTTGGGGCACAGGTaGAATCCAAGCTTCAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: RACLVLEDQTKVLDLALKRLGHR*NPSFRL Trigger: GAGCCTGAAGCTTGGATTTCACCTGTGCCCCAACCT...CTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR TCA 90 bp | TTCTGCCCATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGAGACCATGGCGTGAATaGGGTAATGCCTCCACCTTG | + |
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Preference number: 2 (lower is better) Translates to: FCPCSRACLVLEDQTKVLRPWRE*GNASTL Trigger: CAAGGTGGAGGCATTACCTCATTCACGCCATGGTCT...CAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGTAATGAGAAAACCTCAGCCTAGACTCCAGCCCCTTCAGAGAGTGGAGGAAAGGTTGGGGCACAGGTaGAATCCAAGCTTCAGGCTC | + |
|
Preference number: 2 (lower is better) Translates to: WVMRKPQPRLQPLQRVEERLGHR*NPSFRL Trigger: GAGCCTGAAGCTTGGATTTCACCTGTGCCCCAACCT...TTCCTCCACTCTCTGAAGGGGCTGGAGTCTAGGCTGAGGTTTTCTCATTACCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR CCA 90 bp | CGTGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGACAGGACATCCAGGTTaGGGCACAGGTGAAATCCAA | + |
|
Preference number: 2 (lower is better) Translates to: RACLVLEDQTKVLDLALKTGHPG*GTGEIQ Trigger: TTGGATTTCACCTGTGCCCCAACCTGGATGTCCTGT...CTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR CCA 90 bp | GTTCTGCCCATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTACAGGACATCCAGGTTaGGGCACAGGTGAAATCCAA | + |
|
Preference number: 2 (lower is better) Translates to: VLPMFTCMPGAGGSDEGVTGHPG*GTGEIQ Trigger: TTGGATTTCACCTGTGCCCCAACCTGGATGTCCTGT...AACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGGGTTGTAAGCAACAGACCATGGCGTGAATaGGGTAATGCCTCCACCTTG | + |
|
Preference number: 2 (lower is better) Translates to: LEDQTKVLDLALKRVVSNRPWRE*GNASTL Trigger: CAAGGTGGAGGCATTACCTCATTCACGCCATGGTCT...GTTGCTTACAACCCTCTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTCCAGGCCTAGTAATTATTTGGTCTCACTGTGTCCCACCATGCTCAGACCAACAGGACATCCAGGTTaGGGCACAGGTGAAATCCAA | + |
|
Preference number: 2 (lower is better) Translates to: PSRPSNYLVSLCPTMLRPTGHPG*GTGEIQ Trigger: TTGGATTTCACCTGTGCCCCAACCTGGATGTCCTGT...TGGTCTGAGCATGGTGGGACACAGTGAGACCAAATAATTACTAGGCCTGGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR CCA 90 bp | ATGCACGTTCTGCCCATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAATCACCAGATTCCAGGTaGGTAATGAGAAAACCTCAG | + |
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Preference number: 2 (lower is better) Translates to: MHVLPMFTCMPGAGGSDESPDSR*VMRKPQ Trigger: CTGAGGTTTTCTCATTACCCACCTGGAATCTGGTGA...TTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAACGTGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR GCA 90 bp | TTCTGCCCATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGAACTACAGAGTCAGTTaGACAAGCCAGAGTGTAAAC | + |
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Preference number: 2 (lower is better) Translates to: FCPCSRACLVLEDQTKVLNYRVS*TSQSVN Trigger: GTTTACACTCTGGCTTGTGCAACTGACTCTGTAGTT...CAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR GCA 90 bp | CATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATCTGGAACTACAGAGTCAGTTaGACAAGCCAGAGTGTAAAC | + |
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Preference number: 2 (lower is better) Translates to: HVHVHAWCWRIRRRCWIWNYRVS*TSQSVN Trigger: GTTTACACTCTGGCTTGTGCAACTGACTCTGTAGTT...CCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR CCA 90 bp | ATGTCTATGCACGTTCTGCCCATGTTCACGTGCATGCCTGGTGCTGGAGGATCAAAATCTAGCATTTTCTaGGCCAGCACAGGACATCCA | + |
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Preference number: 2 (lower is better) Translates to: MSMHVLPMFTCMPGAGGSKSSIF*ASTGHP Trigger: TGGATGTCCTGTGCTGGCCCAGAAAATGCTAGATTT...TGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAACGTGCATAGACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR CCA 90 bp | ATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGGGTTCACCAGATTCCAGGTaGGTAATGAGAAAACCTCAG | + |
|
Preference number: 2 (lower is better) Translates to: MPGAGGSDEGVGSGVKEGSPDSR*VMRKPQ Trigger: CTGAGGTTTTCTCATTACCCACCTGGAATCTGGTGA...ACCCTCTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR CCA 90 bp | ATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGGGTGGCCTAGTAATTATTTaGTCTCACTGTGTCCCACCA | + |
|
Preference number: 2 (lower is better) Translates to: MPGAGGSDEGVGSGVKEGGLVII*SHCVPP Trigger: TGGTGGGACACAGTGAGACCAAATAATTACTAGGCC...ACCCTCTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR GCA 90 bp | TGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGAACTACAGAGTCAGTTaGACAAGCCAGAGTGTAAAC | + |
|
Preference number: 2 (lower is better) Translates to: CMPGAGGSDEGVGSGVKENYRVS*TSQSVN Trigger: GTTTACACTCTGGCTTGTGCAACTGACTCTGTAGTT...CTCTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR CCA 90 bp | AGGCCTAGTAATTATTTGGTCTCACTGTGTCCCACCATGCTCAGACCATGGCGTTCACCAGATTCCAGGTaGGTAATGAGAAAACCTCAG | + |
|
Preference number: 2 (lower is better) Translates to: RPSNYLVSLCPTMLRPWRSPDSR*VMRKPQ Trigger: CTGAGGTTTTCTCATTACCCACCTGGAATCTGGTGA...ACGCCATGGTCTGAGCATGGTGGGACACAGTGAGACCAAATAATTACTAGGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGGGTTGTAAGCAACTAAAATCTAGCATTTTCTaGGCCAGCACAGGACATCCA | + |
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Preference number: 2 (lower is better) Translates to: GGSDEGVGSGVKEGCKQLKSSIF*ASTGHP Trigger: TGGATGTCCTGTGCTGGCCCAGAAAATGCTAGATTT...TAGTTGCTTACAACCCTCTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGGGTTGTAAGCAACTATCCAGGAATGGAACCTaGATCTTCAGGAGAAACATA | + |
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Preference number: 2 (lower is better) Translates to: GGSDEGVGSGVKEGCKQLSRNGT*IFRRNI Trigger: TATGTTTCTCCTGAAGATCCAGGTTCCATTCCTGGA...TAGTTGCTTACAACCCTCTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR GCA 72 bp | TATGCACGTTCTGCCCATGTTCACGTGCATGCCTGGTaGTGGAGGATCAGACGAAGGTGTTGGATCTGGCGT | + |
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Preference number: 3 (lower is better) Translates to: YARSAHVHVHAW*WRIRRRCWIWR Trigger: ACGCCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAACGTGCATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR GCA 72 bp | TCATGTCTATGCACGTTCTGCCCATGTTCACGTGCATaGCTGGTGCTGGAGGATCAGACGAAGGTGTTGGAT | + |
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Preference number: 3 (lower is better) Translates to: SCLCTFCPCSRA*LVLEDQTKVLD Trigger: ATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAACGTGCATAGACATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR GCA 72 bp | GGCCTAGTAATTATTTGGTCTCACTGTGTCCCACCATaGTCAGACCATGGCGTGAATGAGGTAATGCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: GLVIIWSHCVPP*SDHGVNEVMPP Trigger: TGGAGGCATTACCTCATTCACGCCATGGTCTGAGCATGGTGGGACACAGTGAGACCAAATAATTACTAGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR GCA 72 bp | TATTTCATGTCTATGCACGTTCTGCCCATGTTCACGTaGATGCCTGGTGCTGGAGGATCAGACGAAGGTGTT | + |
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Preference number: 3 (lower is better) Translates to: YFMSMHVLPMFT*MPGAGGSDEGV Trigger: AACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAACGTGCATAGACATGAAATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR TCA 90 bp | CTTTATTGGTTTCCTATAGACCTGGGCCCAGCTAGGTGTGCTCAGGGCAGGATCCCACCGCTGTGGCCGTaGAGTCAGGAGCCGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: LYWFPIDLGPARCAQGRIPPLWP*SQEPTF Trigger: GAAAGTCGGCTCCTGACTTCACGGCCACAGCGGTGG...GATCCTGCCCTGAGCACACCTAGCTGGGCCCAGGTCTATAGGAAACCAATAAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR TCA 90 bp | ATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGGGTCCACCGCTGTGGCCGTaGAGTCAGGAGCCGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: MPGAGGSDEGVGSGVKEGPPLWP*SQEPTF Trigger: GAAAGTCGGCTCCTGACTTCACGGCCACAGCGGTGG...ACCCTCTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR TCA 90 bp | TGGGTAATGAGAAAACCTCAGCCTAGACTCCAGCCCCTTCAGAGAGTGGAGGAACCACCGCTGTGGCCGTaGAGTCAGGAGCCGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: WVMRKPQPRLQPLQRVEEPPLWP*SQEPTF Trigger: GAAAGTCGGCTCCTGACTTCACGGCCACAGCGGTGG...TTCCTCCACTCTCTGAAGGGGCTGGAGTCTAGGCTGAGGTTTTCTCATTACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR TCA 90 bp | TTCTGCCCATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGTGGGGCAAACAAAAGTaGAGTCCAGTGGGTAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: FCPCSRACLVLEDQTKVLWGKQK*SPVGRK Trigger: TTTTCTACCCACTGGACTTCACTTTTGTTTGCCCCA...CAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR GCA 90 bp | ATGCACGTTCTGCCCATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAAGACCCCTGTAAGCAATaGCCTCATCATTTTTCAACA | + |
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Preference number: 4 (lower is better) Translates to: MHVLPMFTCMPGAGGSDEDPCKQ*PHHFST Trigger: TGTTGAAAAATGATGAGGGCATTGCTTACAGGGGTC...TTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAACGTGCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR GCA 90 bp | TGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGTGGAGAAGTATTCCTTaGTGTCATCCACATTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CMPGAGGSDEGVGSGVKEWRSIP*CHPHWA Trigger: AGCCCAATGTGGATGACAGCAAGGAATACTTCTCCA...CTCTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR GCA 90 bp | CCAGATTCCAGGTGGGTAATGAGAAAACCTCAGCCTAGACTCCAGCCCCTTCAGGACCCCTGTAAGCAATaGCCTCATCATTTTTCAACA | + |
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Preference number: 4 (lower is better) Translates to: PDSRWVMRKPQPRLQPLQDPCKQ*PHHFST Trigger: TGTTGAAAAATGATGAGGGCATTGCTTACAGGGGTC...CTGAAGGGGCTGGAGTCTAGGCTGAGGTTTTCTCATTACCCACCTGGAATCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| 3UTR CAA 72 bp | GAGCTCTTAAAGAATCCCTCCAGGCCTAGTAATTATTaGGTCTCACTGTGTCCCACCATGCTCAGACCATGG | + |
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Preference number: 4 (lower is better) Translates to: ELLKNPSRPSNY*VSLCPTMLRPW Trigger: CCATGGTCTGAGCATGGTGGGACACAGTGAGACCAAATAATTACTAGGCCTGGAGGGATTCTTTAAGAGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR GCA 90 bp | GGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGGGTTGTAAGCAACTAGACCCCTGTAAGCAATaGCCTCATCATTTTTCAACA | + |
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Preference number: 4 (lower is better) Translates to: GGSDEGVGSGVKEGCKQLDPCKQ*PHHFST Trigger: TGTTGAAAAATGATGAGGGCATTGCTTACAGGGGTC...TAGTTGCTTACAACCCTCTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR GCA 90 bp | AACCTGGATCTTCAGGAGAAACATAAAGAGCTCTTAAAGAATCCCTCCAGGCCTGACCCCTGTAAGCAATaGCCTCATCATTTTTCAACA | + |
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Preference number: 4 (lower is better) Translates to: NLDLQEKHKELLKNPSRPDPCKQ*PHHFST Trigger: TGTTGAAAAATGATGAGGGCATTGCTTACAGGGGTC...AGGCCTGGAGGGATTCTTTAAGAGCTCTTTATGTTTCTCCTGAAGATCCAGGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR TCA 90 bp | CACAAGCCAGAGTGTAAACTACTAAAACTACTAAACACACACCAACACAGACTTTGGGGCAAACAAAAGTaGAGTCCAGTGGGTAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: HKPECKLLKLLNTHQHRLWGKQK*SPVGRK Trigger: TTTTCTACCCACTGGACTTCACTTTTGTTTGCCCCA...AAGTCTGTGTTGGTGTGTGTTTAGTAGTTTTAGTAGTTTACACTCTGGCTTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR CAA 90 bp | TATTCACCAGATTCCAGGTGGGTAATGAGAAAACCTCAGCCTAGACTCCAGCCCAGCCGACTTTCCGATTaGCGCGTTGCCGGAGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: YSPDSRWVMRKPQPRLQPSRLSD*RVAGGH Trigger: ATGGCCTCCGGCAACGCGCAAATCGGAAAGTCGGCT...GGGCTGGAGTCTAGGCTGAGGTTTTCTCATTACCCACCTGGAATCTGGTGAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR CAA 90 bp | TGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATCTGGCGTTAAAGAGCCCACAGGTAGGTCATaGACTGTGATCTGGCGAAGG | + |
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Preference number: 5 (lower is better) Translates to: CMPGAGGSDEGVGSGVKEPTGRS*TVIWRR Trigger: CCTTCGCCAGATCACAGTCAATGACCTACCTGTGGG...CTCTTTAACGCCAGATCCAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR CAA 90 bp | CTGCCCATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTGGATTGCTGTCATCCACATaGGGCTTGATGGTGTCACTG | + |
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Preference number: 5 (lower is better) Translates to: LPMFTCMPGAGGSDEGVGLLSST*GLMVSL Trigger: CAGTGACACCATCAAGCCCAATGTGGATGACAGCAA...TCCAACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR CAA 90 bp | ATGCACGTTCTGCCCATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAATTGCTGTCATCCACATaGGGCTTGATGGTGTCACTG | + |
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Preference number: 5 (lower is better) Translates to: MHVLPMFTCMPGAGGSDELLSST*GLMVSL Trigger: CAGTGACACCATCAAGCCCAATGTGGATGACAGCAA...TTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAACGTGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR CAA 90 bp | GTTCTGCCCATGTTCACGTGCATGCCTGGTGCTGGAGGATCAGACGAAGGTGTTTTGCTGTCATCCACATaGGGCTTGATGGTGTCACTG | + |
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Preference number: 5 (lower is better) Translates to: VLPMFTCMPGAGGSDEGVLLSST*GLMVSL Trigger: CAGTGACACCATCAAGCCCAATGTGGATGACAGCAA...AACACCTTCGTCTGATCCTCCAGCACCAGGCATGCACGTGAACATGGGCAGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR CAA 90 bp | TCTGGCGTTAAAGAGGGTTGTAAGCAACTATGTAAGCTCCAGGAATGGAACCTGAGCCGACTTTCCGATTaGCGCGTTGCCGGAGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: SGVKEGCKQLCKLQEWNLSRLSD*RVAGGH Trigger: ATGGCCTCCGGCAACGCGCAAATCGGAAAGTCGGCT...CAGGTTCCATTCCTGGAGCTTACATAGTTGCTTACAACCCTCTTTAACGCCAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR CAA 90 bp | CCAGATTCCAGGTGGGTAATGAGAAAACCTCAGCCTAGACTCCAGCCCCTTCAGTTGCTGTCATCCACATaGGGCTTGATGGTGTCACTG | + |
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Preference number: 5 (lower is better) Translates to: PDSRWVMRKPQPRLQPLQLLSST*GLMVSL Trigger: CAGTGACACCATCAAGCCCAATGTGGATGACAGCAA...CTGAAGGGGCTGGAGTCTAGGCTGAGGTTTTCTCATTACCCACCTGGAATCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR CAA 90 bp | AGCAACTATGTAAGCTCCAGGAATGGAACCTGGATCTTCAGGAGAAACATAAAGAGCCGACTTTCCGATTaGCGCGTTGCCGGAGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: SNYVSSRNGTWIFRRNIKSRLSD*RVAGGH Trigger: ATGGCCTCCGGCAACGCGCAAATCGGAAAGTCGGCT...CTTTATGTTTCTCCTGAAGATCCAGGTTCCATTCCTGGAGCTTACATAGTTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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| CDS-3UTR CAA 90 bp | CACAAGCCAGAGTGTAAACTACTAAAACTACTAAACACACACCAACACAGACTTAGCCGACTTTCCGATTaGCGCGTTGCCGGAGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: HKPECKLLKLLNTHQHRLSRLSD*RVAGGH Trigger: ATGGCCTCCGGCAACGCGCAAATCGGAAAGTCGGCT...AAGTCTGTGTTGGTGTGTGTTTAGTAGTTTTAGTAGTTTACACTCTGGCTTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005292.15 ENSMUST00000109733.8 ENSMUST00000109734.8 ENSMUST00000164807.2 |
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