RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRDX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028691

Ensembl transcript IDs: ENSMUST00000030454.6, ENSMUST00000106470.8, ENSMUST00000129315.8, ENSMUST00000135573.8, ENSMUST00000151129.8

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCTCAAATAAATCTTTCCCAGACTTGCCTATAACCCAGCAAACATaGACTGCAGTGCAATGGCTGAGAGGACAGCAGGGCTTGGGTCTG +
Preference number: 1 (lower is better)
Translates to: SSNKSFPDLPITQQT*TAVQWLRGQQGLGL
Trigger: CAGACCCAAGCCCTGCTGTCCTCTCAGCCATTGCACTGCAGTTCATGTTTGCTGGGTTATAGGCAAGTCTGGGAAAGATTTATTTGAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
3UTR-3UTR CCA 90 bp CCCAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATCCAACAGGCAGGTATACAAGAGTTTCTTCTaGCTGCTCAATGCTGCCTGG +
Preference number: 2 (lower is better)
Translates to: PRFNSQHPHGPRVSNRQVYKSFF*LLNAAW
Trigger: CCAGGCAGCATTGAGCAGCCAGAAGAAACTCTTGTA...TACCTGCCTGTTGGATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
3UTR-3UTR CCA 90 bp GCTCTTATAGAAGACCCAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATCAACAGGCAGGTAAATaGTACACATGCTGGGGAAAC +
Preference number: 2 (lower is better)
Translates to: ALIEDPGSIPSTHMVPGYQQAGK*YTCWGN
Trigger: GTTTCCCCAGCATGTGTACCATTTACCTGCCTGTTG...ATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTGGGTCTTCTATAAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
3UTR CAA 90 bp GCAACAAGTAAAACAGAATACCAGGCAAGCACTCTACCAAAAGCTTaGTCTCCAGACCTGAGGCACCTTTCAACCTTTCAAACCCAATTT +
Preference number: 2 (lower is better)
Translates to: ATSKTEYQASTLPKA*SPDLRHLSTFQTQF
Trigger: AAATTGGGTTTGAAAGGTTGAAAGGTGCCTCAGGTCTGGAGACAAAGCTTTTGGTAGAGTGCTTGCCTGGTATTCTGTTTTACTTGTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
3UTR-3UTR GCA 90 bp CAGGGCTGTTACACAGAGAAACCCTGTCTCGAAAAACAAAAGGCCAACTATGGTGGTAAATGGTACACATaGTGGGGAAACATTCTTTTT +
Preference number: 2 (lower is better)
Translates to: QGCYTEKPCLEKQKANYGGKWYT*WGNILF
Trigger: AAAAAGAATGTTTCCCCAGCATGTGTACCATTTACC...ACCATAGTTGGCCTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAACAGCCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
3UTR GCA 72 bp TTTCCCAGACTTGCCTATAACCCAGCAAACATGAACTaGAGTGCAATGGCTGAGAGGACAGCAGGGCTTGGG +
Preference number: 3 (lower is better)
Translates to: FPRLAYNPANMN*SAMAERTAGLG
Trigger: CCCAAGCCCTGCTGTCCTCTCAGCCATTGCACTGCAGTTCATGTTTGCTGGGTTATAGGCAAGTCTGGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
3UTR-3UTR CAA 90 bp TTCTGCTTCAGTTCCTCCTTGAAGTCCTACCCTGACTTTACCTCAGGTATGACTGTGACTGATAGAAGATaGGTCTGCCCAAAACACAGC +
Preference number: 3 (lower is better)
Translates to: FCFSSSLKSYPDFTSGMTVTDRR*VCPKHS
Trigger: GCTGTGTTTTGGGCAGACCAATCTTCTATCAGTCAC...AGTCATACCTGAGGTAAAGTCAGGGTAGGACTTCAAGGAGGAACTGAAGCAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
3UTR TCA 72 bp CTAAGAAAAACAGGGGCTTTGGAGATAGTTCAGCTGTaGCATGCTTGTGAGGAAGCAATTTACTCCATGGAA +
Preference number: 3 (lower is better)
Translates to: LRKTGALEIVQL*HACEEAIYSME
Trigger: TTCCATGGAGTAAATTGCTTCCTCACAAGCATGTCACAGCTGAACTATCTCCAAAGCCCCTGTTTTTCTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
CDS-3UTR GCA 90 bp CAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATCCAACAGGCAGGTAAAGGGTGTGTTAATCCATaGCAGATGACAGAAGTGAGA +
Preference number: 4 (lower is better)
Translates to: QVQFPAPTWSQGIQQAGKGCVNP*QMTEVR
Trigger: TCTCACTTCTGTCATCTGGCATGGATTAACACACCC...TTTACCTGCCTGTTGGATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
CDS-3UTR GCA 90 bp GCACGAGTAGAGTACAAGAGTTTCTTCTGGCTGCTCAATGCTGCCTGGCAGAAAAATCCTGAGCAATGGTaGGCTTGGGATCTGATATTA +
Preference number: 4 (lower is better)
Translates to: ARVEYKSFFWLLNAAWQKNPEQW*AWDLIL
Trigger: TAATATCAGATCCCAAGCGCACCATTGCTCAGGATT...TTTCTGCCAGGCAGCATTGAGCAGCCAGAAGAAACTCTTGTACTCTACTCGTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
CDS-3UTR CCA 90 bp CCAAAAGCTTTGTCTCCAGACCTGAGGCACCTTTCAACCTTTCAAACCCAATTTGAGCAATGGTGCGCTTaGGATCTGATATTAAGGGAA +
Preference number: 4 (lower is better)
Translates to: PKALSPDLRHLSTFQTQFEQWCA*DLILRE
Trigger: TTCCCTTAATATCAGATCCCAAGCGCACCATTGCTC...AAATTGGGTTTGAAAGGTTGAAAGGTGCCTCAGGTCTGGAGACAAAGCTTTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
CDS-3UTR CCA 90 bp TTCTGCTTCAGTTCCTCCTTGAAGTCCTACCCTGACTTTACCTCAGGTATGACTTTTGAATTGTCCATCTaGCATAACAGCTGTAGCTTT +
Preference number: 4 (lower is better)
Translates to: FCFSSSLKSYPDFTSGMTFELSI*HNSCSF
Trigger: AAAGCTACAGCTGTTATGCCAGATGGACAATTCAAA...AGTCATACCTGAGGTAAAGTCAGGGTAGGACTTCAAGGAGGAACTGAAGCAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
CDS-3UTR CAA 90 bp CAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATCCAACAGGCAGGTAAAATAACAGCTGTAGCTTaGAAGTTGGGAGCAGGATAC +
Preference number: 5 (lower is better)
Translates to: QVQFPAPTWSQGIQQAGKITAVA*KLGAGY
Trigger: GTATCCTGCTCCCAACTTCAAAGCTACAGCTGTTAT...TTTACCTGCCTGTTGGATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
CDS-3UTR CAA 90 bp CAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATCCAACAGGCAGGTAAAAATCCTCCTTGTTTCTaGGGTGTGTTAATCCATGCC +
Preference number: 5 (lower is better)
Translates to: QVQFPAPTWSQGIQQAGKNPPCF*GVLIHA
Trigger: GGCATGGATTAACACACCCAAGAAACAAGGAGGATT...TTTACCTGCCTGTTGGATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
CDS-3UTR CAA 90 bp GCTCTTATAGAAGACCCAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATGGGTCCCAATCCTCCTaGTTTCTTGGGTGTGTTAAT +
Preference number: 5 (lower is better)
Translates to: ALIEDPGSIPSTHMVPGYGSQSS*FLGCVN
Trigger: ATTAACACACCCAAGAAACAAGGAGGATTGGGACCC...ATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTGGGTCTTCTATAAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
CDS-3UTR CAA 90 bp CCAAAAGCTTTGTCTCCAGACCTGAGGCACCTTTCAACCTTTCAAACCCAATTTGCTGTAGCTTTGAAGTaGGGAGCAGGATACCCAATT +
Preference number: 5 (lower is better)
Translates to: PKALSPDLRHLSTFQTQFAVALK*GAGYPI
Trigger: AATTGGGTATCCTGCTCCCAACTTCAAAGCTACAGC...AAATTGGGTTTGAAAGGTTGAAAGGTGCCTCAGGTCTGGAGACAAAGCTTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
CDS-3UTR CAA 90 bp CAGGGCTGTTACACAGAGAAACCCTGTCTCGAAAAACAAAAGGCCAACTATGGTTTAGAGAAATACTCTTaGCTCTTATTGACATCAGGC +
Preference number: 5 (lower is better)
Translates to: QGCYTEKPCLEKQKANYGLEKYS*LLLTSG
Trigger: GCCTGATGTCAATAAGAGCAAAGAGTATTTCTCTAA...ACCATAGTTGGCCTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAACAGCCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135573.8
CDS CAA 72 bp TCTTTGAATTGTCCATCTGGCATAACAGCTGTAGCTTaGAAGTTGGGAGCAGGATACCCAATTTTTGCATTT +
Preference number: 6 (lower is better)
Translates to: SLNCPSGITAVA*KLGAGYPIFAF
Trigger: AAATGCAAAAATTGGGTATCCTGCTCCCAACTTCAAAGCTACAGCTGTTATGCCAGATGGACAATTCAAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000030454.6
ENSMUST00000106470.8
ENSMUST00000129315.8
ENSMUST00000135573.8
ENSMUST00000151129.8