Pregenerated sensors for PRDX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028691Ensembl transcript IDs: ENSMUST00000030454.6, ENSMUST00000106470.8, ENSMUST00000129315.8, ENSMUST00000135573.8, ENSMUST00000151129.8
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | AGCTCAAATAAATCTTTCCCAGACTTGCCTATAACCCAGCAAACATaGACTGCAGTGCAATGGCTGAGAGGACAGCAGGGCTTGGGTCTG | + |
Preference number: 1 (lower is better) Translates to: SSNKSFPDLPITQQT*TAVQWLRGQQGLGL Trigger: CAGACCCAAGCCCTGCTGTCCTCTCAGCCATTGCACTGCAGTTCATGTTTGCTGGGTTATAGGCAAGTCTGGGAAAGATTTATTTGAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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3UTR-3UTR CCA 90 bp | CCCAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATCCAACAGGCAGGTATACAAGAGTTTCTTCTaGCTGCTCAATGCTGCCTGG | + |
Preference number: 2 (lower is better) Translates to: PRFNSQHPHGPRVSNRQVYKSFF*LLNAAW Trigger: CCAGGCAGCATTGAGCAGCCAGAAGAAACTCTTGTA...TACCTGCCTGTTGGATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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3UTR-3UTR CCA 90 bp | GCTCTTATAGAAGACCCAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATCAACAGGCAGGTAAATaGTACACATGCTGGGGAAAC | + |
Preference number: 2 (lower is better) Translates to: ALIEDPGSIPSTHMVPGYQQAGK*YTCWGN Trigger: GTTTCCCCAGCATGTGTACCATTTACCTGCCTGTTG...ATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTGGGTCTTCTATAAGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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3UTR CAA 90 bp | GCAACAAGTAAAACAGAATACCAGGCAAGCACTCTACCAAAAGCTTaGTCTCCAGACCTGAGGCACCTTTCAACCTTTCAAACCCAATTT | + |
Preference number: 2 (lower is better) Translates to: ATSKTEYQASTLPKA*SPDLRHLSTFQTQF Trigger: AAATTGGGTTTGAAAGGTTGAAAGGTGCCTCAGGTCTGGAGACAAAGCTTTTGGTAGAGTGCTTGCCTGGTATTCTGTTTTACTTGTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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3UTR-3UTR GCA 90 bp | CAGGGCTGTTACACAGAGAAACCCTGTCTCGAAAAACAAAAGGCCAACTATGGTGGTAAATGGTACACATaGTGGGGAAACATTCTTTTT | + |
Preference number: 2 (lower is better) Translates to: QGCYTEKPCLEKQKANYGGKWYT*WGNILF Trigger: AAAAAGAATGTTTCCCCAGCATGTGTACCATTTACC...ACCATAGTTGGCCTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAACAGCCCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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3UTR GCA 72 bp | TTTCCCAGACTTGCCTATAACCCAGCAAACATGAACTaGAGTGCAATGGCTGAGAGGACAGCAGGGCTTGGG | + |
Preference number: 3 (lower is better) Translates to: FPRLAYNPANMN*SAMAERTAGLG Trigger: CCCAAGCCCTGCTGTCCTCTCAGCCATTGCACTGCAGTTCATGTTTGCTGGGTTATAGGCAAGTCTGGGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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3UTR-3UTR CAA 90 bp | TTCTGCTTCAGTTCCTCCTTGAAGTCCTACCCTGACTTTACCTCAGGTATGACTGTGACTGATAGAAGATaGGTCTGCCCAAAACACAGC | + |
Preference number: 3 (lower is better) Translates to: FCFSSSLKSYPDFTSGMTVTDRR*VCPKHS Trigger: GCTGTGTTTTGGGCAGACCAATCTTCTATCAGTCAC...AGTCATACCTGAGGTAAAGTCAGGGTAGGACTTCAAGGAGGAACTGAAGCAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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3UTR TCA 72 bp | CTAAGAAAAACAGGGGCTTTGGAGATAGTTCAGCTGTaGCATGCTTGTGAGGAAGCAATTTACTCCATGGAA | + |
Preference number: 3 (lower is better) Translates to: LRKTGALEIVQL*HACEEAIYSME Trigger: TTCCATGGAGTAAATTGCTTCCTCACAAGCATGTCACAGCTGAACTATCTCCAAAGCCCCTGTTTTTCTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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CDS-3UTR GCA 90 bp | CAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATCCAACAGGCAGGTAAAGGGTGTGTTAATCCATaGCAGATGACAGAAGTGAGA | + |
Preference number: 4 (lower is better) Translates to: QVQFPAPTWSQGIQQAGKGCVNP*QMTEVR Trigger: TCTCACTTCTGTCATCTGGCATGGATTAACACACCC...TTTACCTGCCTGTTGGATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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CDS-3UTR GCA 90 bp | GCACGAGTAGAGTACAAGAGTTTCTTCTGGCTGCTCAATGCTGCCTGGCAGAAAAATCCTGAGCAATGGTaGGCTTGGGATCTGATATTA | + |
Preference number: 4 (lower is better) Translates to: ARVEYKSFFWLLNAAWQKNPEQW*AWDLIL Trigger: TAATATCAGATCCCAAGCGCACCATTGCTCAGGATT...TTTCTGCCAGGCAGCATTGAGCAGCCAGAAGAAACTCTTGTACTCTACTCGTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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CDS-3UTR CCA 90 bp | CCAAAAGCTTTGTCTCCAGACCTGAGGCACCTTTCAACCTTTCAAACCCAATTTGAGCAATGGTGCGCTTaGGATCTGATATTAAGGGAA | + |
Preference number: 4 (lower is better) Translates to: PKALSPDLRHLSTFQTQFEQWCA*DLILRE Trigger: TTCCCTTAATATCAGATCCCAAGCGCACCATTGCTC...AAATTGGGTTTGAAAGGTTGAAAGGTGCCTCAGGTCTGGAGACAAAGCTTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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CDS-3UTR CCA 90 bp | TTCTGCTTCAGTTCCTCCTTGAAGTCCTACCCTGACTTTACCTCAGGTATGACTTTTGAATTGTCCATCTaGCATAACAGCTGTAGCTTT | + |
Preference number: 4 (lower is better) Translates to: FCFSSSLKSYPDFTSGMTFELSI*HNSCSF Trigger: AAAGCTACAGCTGTTATGCCAGATGGACAATTCAAA...AGTCATACCTGAGGTAAAGTCAGGGTAGGACTTCAAGGAGGAACTGAAGCAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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CDS-3UTR CAA 90 bp | CAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATCCAACAGGCAGGTAAAATAACAGCTGTAGCTTaGAAGTTGGGAGCAGGATAC | + |
Preference number: 5 (lower is better) Translates to: QVQFPAPTWSQGIQQAGKITAVA*KLGAGY Trigger: GTATCCTGCTCCCAACTTCAAAGCTACAGCTGTTAT...TTTACCTGCCTGTTGGATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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CDS-3UTR CAA 90 bp | CAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATCCAACAGGCAGGTAAAAATCCTCCTTGTTTCTaGGGTGTGTTAATCCATGCC | + |
Preference number: 5 (lower is better) Translates to: QVQFPAPTWSQGIQQAGKNPPCF*GVLIHA Trigger: GGCATGGATTAACACACCCAAGAAACAAGGAGGATT...TTTACCTGCCTGTTGGATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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CDS-3UTR CAA 90 bp | GCTCTTATAGAAGACCCAGGTTCAATTCCCAGCACCCACATGGTCCCAGGGTATGGGTCCCAATCCTCCTaGTTTCTTGGGTGTGTTAAT | + |
Preference number: 5 (lower is better) Translates to: ALIEDPGSIPSTHMVPGYGSQSS*FLGCVN Trigger: ATTAACACACCCAAGAAACAAGGAGGATTGGGACCC...ATACCCTGGGACCATGTGGGTGCTGGGAATTGAACCTGGGTCTTCTATAAGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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CDS-3UTR CAA 90 bp | CCAAAAGCTTTGTCTCCAGACCTGAGGCACCTTTCAACCTTTCAAACCCAATTTGCTGTAGCTTTGAAGTaGGGAGCAGGATACCCAATT | + |
Preference number: 5 (lower is better) Translates to: PKALSPDLRHLSTFQTQFAVALK*GAGYPI Trigger: AATTGGGTATCCTGCTCCCAACTTCAAAGCTACAGC...AAATTGGGTTTGAAAGGTTGAAAGGTGCCTCAGGTCTGGAGACAAAGCTTTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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CDS-3UTR CAA 90 bp | CAGGGCTGTTACACAGAGAAACCCTGTCTCGAAAAACAAAAGGCCAACTATGGTTTAGAGAAATACTCTTaGCTCTTATTGACATCAGGC | + |
Preference number: 5 (lower is better) Translates to: QGCYTEKPCLEKQKANYGLEKYS*LLLTSG Trigger: GCCTGATGTCAATAAGAGCAAAGAGTATTTCTCTAA...ACCATAGTTGGCCTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAACAGCCCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135573.8 |
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CDS CAA 72 bp | TCTTTGAATTGTCCATCTGGCATAACAGCTGTAGCTTaGAAGTTGGGAGCAGGATACCCAATTTTTGCATTT | + |
Preference number: 6 (lower is better) Translates to: SLNCPSGITAVA*KLGAGYPIFAF Trigger: AAATGCAAAAATTGGGTATCCTGCTCCCAACTTCAAAGCTACAGCTGTTATGCCAGATGGACAATTCAAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000030454.6 ENSMUST00000106470.8 ENSMUST00000129315.8 ENSMUST00000135573.8 ENSMUST00000151129.8 |