RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRDM14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042414

Ensembl transcript IDs: ENSMUST00000047577.7

Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TACAGCCCCAGAGGATCTGATGTCTTCCTTGGGCCTCCACACGCATaGAGCACAGAAACATGCCCGCGGCGAACACTCATGCACATAGTC +
Preference number: 1 (lower is better)
Translates to: YSPRGSDVFLGPPHA*STETCPRRTLMHIV
Trigger: GACTATGTGCATGAGTGTTCGCCGCGGGCATGTTTCTGTGCTGCATGCGTGTGGAGGCCCAAGGAAGACATCAGATCCTCTGGGGCTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR CCA 90 bp CAGCACAGAAACATGCCCGCGGCGAACACTCATGCACATAGTCGCTaGCTACAGACACCGTATAACGGGGTGTTCAAGGCAGACAGGAGA +
Preference number: 1 (lower is better)
Translates to: QHRNMPAANTHAHSR*LQTPYNGVFKADRR
Trigger: TCTCCTGTCTGCCTTGAACACCCCGTTATACGGTGTCTGTAGCCAGCGACTATGTGCATGAGTGTTCGCCGCGGGCATGTTTCTGTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR TCA 90 bp AGGTTTGGAGCTTCAGATCAACTACTCCATTCTCCAGATTCTCACTaGACACTTCAACCATGCCCACGCGACACAGACAAAGCAGGAATG +
Preference number: 1 (lower is better)
Translates to: RFGASDQLLHSPDSH*TLQPCPRDTDKAGM
Trigger: CATTCCTGCTTTGTCTGTGTCGCGTGGGCATGGTTGAAGTGTTCAGTGAGAATCTGGAGAATGGAGTAGTTGATCTGAAGCTCCAAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR TCA 90 bp TCTTCTTTAATCACAAGACCCAGGACTTTATTCTCACTCCTGGTCTaGATGGATTCCATAAGGTTTGGAGCTTCAGATCAACTACTCCAT +
Preference number: 1 (lower is better)
Translates to: SSLITRPRTLFSLLV*MDSIRFGASDQLLH
Trigger: ATGGAGTAGTTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGGAGTGAGAATAAAGTCCTGGGTCTTGTGATTAAAGAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR CAA 90 bp TTACAACTATCCGTAAATACAGCCCCAGAGGATCTGATGTCTTCCTaGGGCCTCCACACGCATGCAGCACAGAAACATGCCCGCGGCGAA +
Preference number: 2 (lower is better)
Translates to: LQLSVNTAPEDLMSS*GLHTHAAQKHARGE
Trigger: TTCGCCGCGGGCATGTTTCTGTGCTGCATGCGTGTGGAGGCCCAAGGAAGACATCAGATCCTCTGGGGCTGTATTTACGGATAGTTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR-3UTR TCA 90 bp TATAGGACAAATTTAAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCACAGCCCCAGAGGATCTaGTGTCTTCCTTGGGCCTCC +
Preference number: 2 (lower is better)
Translates to: YRTNLKPAWGWERKRERPQPQRI*CLPWAS
Trigger: GGAGGCCCAAGGAAGACATCAGATCCTCTGGGGCTG...TGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATTTGTCCTATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR-3UTR GCA 90 bp TATAGGACAAATTTAAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCAGGGCCTCCACACGCATaGAGCACAGAAACATGCCCG +
Preference number: 2 (lower is better)
Translates to: YRTNLKPAWGWERKRERPGPPHA*STETCP
Trigger: CGGGCATGTTTCTGTGCTGCATGCGTGTGGAGGCCC...TGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATTTGTCCTATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR-3UTR TCA 90 bp AAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCAAAACACCACCACCACAGACAAAGCAGGAATaGGAGTCAGCGTTCTTGGTT +
Preference number: 2 (lower is better)
Translates to: KASLGVGEKERETKTPPPQTKQE*ESAFLV
Trigger: AACCAAGAACGCTGACTCTCATTCCTGCTTTGTCTG...TGGTGGTGGTGTTTTGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR-3UTR TCA 90 bp TATAGGACAAATTTAAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCATCTCCAGATTCTCACTaGACACTTCAACCATGCCCA +
Preference number: 2 (lower is better)
Translates to: YRTNLKPAWGWERKRERPSPDSH*TLQPCP
Trigger: TGGGCATGGTTGAAGTGTTCAGTGAGAATCTGGAGA...TGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATTTGTCCTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR GCA 72 bp AGAGGATCTGATGTCTTCCTTGGGCCTCCACACGCATaGAGCACAGAAACATGCCCGCGGCGAACACTCATG +
Preference number: 3 (lower is better)
Translates to: RGSDVFLGPPHA*STETCPRRTLM
Trigger: CATGAGTGTTCGCCGCGGGCATGTTTCTGTGCTGCATGCGTGTGGAGGCCCAAGGAAGACATCAGATCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR CCA 72 bp CAGAGGACCTGGGTTCAATTCCCGGTACCCACACAGTaGCTTACAACTATCCGTAAATACAGCCCCAGAGGA +
Preference number: 3 (lower is better)
Translates to: QRTWVQFPVPTQ*LTTIRKYSPRG
Trigger: TCCTCTGGGGCTGTATTTACGGATAGTTGTAAGCCACTGTGTGGGTACCGGGAATTGAACCCAGGTCCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR CCA 72 bp TTCAGCTATAGGACAAATTTAAAGCCAGCTTGGGGGTaGGAGAGAAAGAGAGAGAGACCAAAACACCACCAC +
Preference number: 3 (lower is better)
Translates to: FSYRTNLKPAWG*ERKRERPKHHH
Trigger: GTGGTGGTGTTTTGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATTTGTCCTATAGCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR TCA 72 bp ATCACAAGACCCAGGACTTTATTCTCACTCCTGGTCTaGATGGATTCCATAAGGTTTGGAGCTTCAGATCAA +
Preference number: 3 (lower is better)
Translates to: ITRPRTLFSLLV*MDSIRFGASDQ
Trigger: TTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGGAGTGAGAATAAAGTCCTGGGTCTTGTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
3UTR CCA 72 bp ATTCTCACTCCTGGTCTGAATGGATTCCATAAGGTTTaGAGCTTCAGATCAACTACTCCATTCTCCAGATTC +
Preference number: 3 (lower is better)
Translates to: ILTPGLNGFHKV*SFRSTTPFSRF
Trigger: GAATCTGGAGAATGGAGTAGTTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGGAGTGAGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR TCA 90 bp AGAGGACCTGGGTTCAATTCCCGGTACCCACACAGTGGCTTACAACTATCCGTACCCACCTCTGACCACTaGTTTGGCCACCGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: RGPGFNSRYPHSGLQLSVPTSDH*FGHRRR
Trigger: GCGGCGGCGGTGGCCAAATCAGTGGTCAGAGGTGGG...TACGGATAGTTGTAAGCCACTGTGTGGGTACCGGGAATTGAACCCAGGTCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR TCA 90 bp TTAAGTCCTAGCAGCACTAGCAGAGGACCTGGGTTCAATTCCCGGTACCCACACACTTTTCCCACAGGTTaGACACAGGTAGGGCCGGTG +
Preference number: 4 (lower is better)
Translates to: LSPSSTSRGPGFNSRYPHTFPTG*TQVGPV
Trigger: CACCGGCCCTACCTGTGTTCAACCTGTGGGAAAAGT...GTGTGGGTACCGGGAATTGAACCCAGGTCCTCTGCTAGTGCTGCTAGGACTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CCA 90 bp TTAAGTCCTAGCAGCACTAGCAGAGGACCTGGGTTCAATTCCCGGTACCCACACAGACCTTCCGGAAGCTaGAGGGAGTCTTTGTCCAGG +
Preference number: 4 (lower is better)
Translates to: LSPSSTSRGPGFNSRYPHRPSGS*RESLSR
Trigger: CCTGGACAAAGACTCCCTCCAGCTTCCGGAAGGTCT...GTGTGGGTACCGGGAATTGAACCCAGGTCCTCTGCTAGTGCTGCTAGGACTTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR TCA 90 bp ATAGTCGCTGGCTACAGACACCGTATAACGGGGTGTTCAAGGCAGACAGGAGAGCAAATGAGGTCTGCATaGGGCAGAGACCTTCCGGAA +
Preference number: 4 (lower is better)
Translates to: IVAGYRHRITGCSRQTGEQMRSA*GRDLPE
Trigger: TTCCGGAAGGTCTCTGCCTCATGCAGACCTCATTTG...CTCTCCTGTCTGCCTTGAACACCCCGTTATACGGTGTCTGTAGCCAGCGACTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR TCA 90 bp TTAAGTCCTAGCAGCACTAGCAGAGGACCTGGGTTCAATTCCCGGTACCCACACTGGCACATCACCAAATaGGGTCTGCATGAGGCAGAG +
Preference number: 4 (lower is better)
Translates to: LSPSSTSRGPGFNSRYPHWHITK*GLHEAE
Trigger: CTCTGCCTCATGCAGACCTCATTTGGTGATGTGCCA...GTGTGGGTACCGGGAATTGAACCCAGGTCCTCTGCTAGTGCTGCTAGGACTTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR TCA 90 bp AAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCAAAACACCACCACCATCACTCCTTTGGCAATaGAGTCGCTGCAGAACACGC +
Preference number: 4 (lower is better)
Translates to: KASLGVGEKERETKTPPPSLLWQ*SRCRTR
Trigger: GCGTGTTCTGCAGCGACTTCATTGCCAAAGGAGTGA...TGGTGGTGGTGTTTTGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CCA 90 bp AAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCAAAACACCACCACCACACACAAGCAGTTCCTaGTTCCGCTGGATGTCTCTA +
Preference number: 4 (lower is better)
Translates to: KASLGVGEKERETKTPPPHTSSS*FRWMSL
Trigger: TAGAGACATCCAGCGGAACCAGGAACTGCTTGTGTG...TGGTGGTGGTGTTTTGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CCA 90 bp AGGACCTGGGTTCAATTCCCGGTACCCACACAGTGGCTTACAACTATCCGTAAAGACTCAGACAGCTGCTaGCCTCCTTGCTCAGTGACA +
Preference number: 4 (lower is better)
Translates to: RTWVQFPVPTQWLTTIRKDSDSC*PPCSVT
Trigger: TGTCACTGAGCAAGGAGGCCAGCAGCTGTCTGAGTC...TTTACGGATAGTTGTAAGCCACTGTGTGGGTACCGGGAATTGAACCCAGGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CCA 90 bp AGGACCTGGGTTCAATTCCCGGTACCCACACAGTGGCTTACAACTATCCGTAAAGTACACGCACTGGTATaGCCTGTCTCCAGAGTGGAC +
Preference number: 4 (lower is better)
Translates to: RTWVQFPVPTQWLTTIRKVHALV*PVSRVD
Trigger: GTCCACTCTGGAGACAGGCCATACCAGTGCGTGTAC...TTTACGGATAGTTGTAAGCCACTGTGTGGGTACCGGGAATTGAACCCAGGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR GCA 90 bp TATAGGACAAATTTAAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCAGAGGACTCAGACAGCTaGTGGCCTCCTTGCTCAGTG +
Preference number: 4 (lower is better)
Translates to: YRTNLKPAWGWERKRERPEDSDS*WPPCSV
Trigger: CACTGAGCAAGGAGGCCAGCAGCTGTCTGAGTCCTC...TGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATTTGTCCTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR GCA 90 bp AGGACCTGGGTTCAATTCCCGGTACCCACACAGTGGCTTACAACTATCCGTAAAAGAGTTGTCCCTGTGTaGCTTCACTTCGCTGGCATT +
Preference number: 4 (lower is better)
Translates to: RTWVQFPVPTQWLTTIRKRVVPV*LHFAGI
Trigger: AATGCCAGCGAAGTGAAGGCACACAGGGACAACTCT...TTTACGGATAGTTGTAAGCCACTGTGTGGGTACCGGGAATTGAACCCAGGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR GCA 90 bp TTAAGTCCTAGCAGCACTAGCAGAGGACCTGGGTTCAATTCCCGGTACCCACACACATCTGTAACCTTCTaGAGACTCTTCAGAGGACTC +
Preference number: 4 (lower is better)
Translates to: LSPSSTSRGPGFNSRYPHTSVTF*RLFRGL
Trigger: GAGTCCTCTGAAGAGTCTGCAGAAGGTTACAGATGT...GTGTGGGTACCGGGAATTGAACCCAGGTCCTCTGCTAGTGCTGCTAGGACTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR GCA 90 bp AGAGGACCTGGGTTCAATTCCCGGTACCCACACAGTGGCTTACAACTATCCGTAGTGGGCAGCATGAGATaGAAAGGCTTTACCACAATG +
Preference number: 4 (lower is better)
Translates to: RGPGFNSRYPHSGLQLSVVGSMR*KGFTTM
Trigger: CATTGTGGTAAAGCCTTTGCATCTCATGCTGCCCAC...TACGGATAGTTGTAAGCCACTGTGTGGGTACCGGGAATTGAACCCAGGTCCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR TCA 90 bp TATAGGACAAATTTAAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCAGAAGGGCTTCTCTCCTaGGTGCTGTCTGATGTGTGT +
Preference number: 4 (lower is better)
Translates to: YRTNLKPAWGWERKRERPEGLLS*VLSDVC
Trigger: ACACACATCAGACAGCACTCAGGAGAGAAGCCCTTC...TGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATTTGTCCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR GCA 90 bp GACAGGAGAGGGGGAACCTTTTCTTCTTTAATCACAAGACCCAGGACTTTATTCCTGGGACTCAAGCACTaGAGCTGCCAGTTTCCAAGG +
Preference number: 4 (lower is better)
Translates to: DRRGGTFSSLITRPRTLFLGLKH*SCQFPR
Trigger: CCTTGGAAACTGGCAGCTGCAGTGCTTGAGTCCCAG...GAATAAAGTCCTGGGTCTTGTGATTAAAGAAGAAAAGGTTCCCCCTCTCCTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR GCA 90 bp TATAGGACAAATTTAAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCAGGCTTCTCTCCTGAGTaGTGTCTGATGTGTGTTCGG +
Preference number: 4 (lower is better)
Translates to: YRTNLKPAWGWERKRERPGFSPE*CLMCVR
Trigger: CCGAACACACATCAGACAGCACTCAGGAGAGAAGCC...TGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATTTGTCCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR GCA 90 bp AATTTAAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCAAAACACCACCTCAAGCACTGCAGCTaGCAGTTTCCAAGGTTGAAA +
Preference number: 4 (lower is better)
Translates to: NLKPAWGWERKRERPKHHLKHCS*QFPRLK
Trigger: TTTCAACCTTGGAAACTGGCAGCTGCAGTGCTTGAG...GTGGTGTTTTGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR GCA 90 bp TATAGGACAAATTTAAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCATCACCAAATGAGGTCTaGATGAGGCAGAGACCTTCC +
Preference number: 4 (lower is better)
Translates to: YRTNLKPAWGWERKRERPSPNEV*MRQRPS
Trigger: GGAAGGTCTCTGCCTCATGCAGACCTCATTTGGTGA...TGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATTTGTCCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR GCA 90 bp TTTCCTTCTCTGTTGGTAAAAGTTAGACATCAACAAGAATTGCCAGTCTTCCTGACGGCCAGCAGGTTCTaGTCCTTGGGGAACCGAGCA +
Preference number: 4 (lower is better)
Translates to: FPSLLVKVRHQQELPVFLTASRF*SLGNRA
Trigger: TGCTCGGTTCCCCAAGGAGCAGAACCTGCTGGCCGT...CAGGAAGACTGGCAATTCTTGTTGATGTCTAACTTTTACCAACAGAGAAGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CCA 90 bp ATAGTCGCTGGCTACAGACACCGTATAACGGGGTGTTCAAGGCAGACAGGAGAGTGTGCTTGTTCAGGCTaGAAGACTGAGAAAAACTTT +
Preference number: 4 (lower is better)
Translates to: IVAGYRHRITGCSRQTGECACSG*KTEKNF
Trigger: AAAGTTTTTCTCAGTCTTCCAGCCTGAACAAGCACA...CTCTCCTGTCTGCCTTGAACACCCCGTTATACGGTGTCTGTAGCCAGCGACTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CCA 90 bp GACAGGAGAGGGGGAACCTTTTCTTCTTTAATCACAAGACCCAGGACTTTATTCGTACAGTACACGCACTaGTATGGCCTGTCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: DRRGGTFSSLITRPRTLFVQYTH*YGLSPE
Trigger: CTCTGGAGACAGGCCATACCAGTGCGTGTACTGTAC...GAATAAAGTCCTGGGTCTTGTGATTAAAGAAGAAAAGGTTCCCCCTCTCCTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR GCA 90 bp CCTGGTCTGAATGGATTCCATAAGGTTTGGAGCTTCAGATCAACTACTCCATTCCTGTGGGAACCAGGATaGCTGAAATTGCATGCTGTA +
Preference number: 4 (lower is better)
Translates to: PGLNGFHKVWSFRSTTPFLWEPG*LKLHAV
Trigger: TACAGCATGCAATTTCAGGCATCCTGGTTCCCACAG...GAATGGAGTAGTTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR TCA 90 bp TTTCCTTCTCTGTTGGTAAAAGTTAGACATCAACAAGAATTGCCAGTCTTCCTGCTGTCGTGGGCAGCATaGGATGCAAAGGCTTTACCA +
Preference number: 4 (lower is better)
Translates to: FPSLLVKVRHQQELPVFLLSWAA*DAKALP
Trigger: TGGTAAAGCCTTTGCATCTCATGCTGCCCACGACAG...CAGGAAGACTGGCAATTCTTGTTGATGTCTAACTTTTACCAACAGAGAAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR TCA 90 bp ATTTTCAGCTATAGGACAAATTTAAAGCCAGCTTGGGGGTGGGAGAGAAAGAGATTCAGGCTGGAAGACTaGGAAAAACTTTTCCCACAG +
Preference number: 4 (lower is better)
Translates to: IFSYRTNLKPAWGWERKRFRLED*EKLFPQ
Trigger: CTGTGGGAAAAGTTTTTCTCAGTCTTCCAGCCTGAA...TCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATTTGTCCTATAGCTGAAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CCA 90 bp ACTCCTGGTCTGAATGGATTCCATAAGGTTTGGAGCTTCAGATCAACTACTCCATTTTCAAAGGATCTTTaGCAGAGAGAACACGGAAAC +
Preference number: 4 (lower is better)
Translates to: TPGLNGFHKVWSFRSTTPFSKDL*QREHGN
Trigger: GTTTCCGTGTTCTCTCTGCCAAAGATCCTTTGAAAA...TGGAGTAGTTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 90 bp GCCTTTCCCACAAATATCGCAGGAGCTACGGCCATTGTCCTTGTGTaGGCGCCGGACGTGGCTGTCGTGGGCAGCATGAGATGCAAAGGC +
Preference number: 5 (lower is better)
Translates to: AFPTNIAGATAIVLV*APDVAVVGSMRCKG
Trigger: GCCTTTGCATCTCATGCTGCCCACGACAGCCACGTCCGGCGCTCACACAAGGACAATGGCCGTAGCTCCTGCGATATTTGTGGGAAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 90 bp TGCAGAACACGCCAAAGTGTGGCACATCACCAAATGAGGTCTGCATaGGGCAGAGACCTTCCGGAAGCTGGAGGGAGTCTTTGTCCAGGG +
Preference number: 5 (lower is better)
Translates to: CRTRQSVAHHQMRSA*GRDLPEAGGSLCPG
Trigger: CCCTGGACAAAGACTCCCTCCAGCTTCCGGAAGGTCTCTGCCTCATGCAGACCTCATTTGGTGATGTGCCACACTTTGGCGTGTTCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 90 bp AATGAAGTCGCTGCAGAACACGCCAAAGTGTGGCACATCACCAAATaGGGTCTGCATGAGGCAGAGACCTTCCGGAAGCTGGAGGGAGTC +
Preference number: 5 (lower is better)
Translates to: NEVAAEHAKVWHITK*GLHEAETFRKLEGV
Trigger: GACTCCCTCCAGCTTCCGGAAGGTCTCTGCCTCATGCAGACCTCATTTGGTGATGTGCCACACTTTGGCGTGTTCTGCAGCGACTTCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS GCA 90 bp GTGGGAACCAGGATGCCTGAAATTGCATGCTGTAAGTCGGTTGGGTaGTCCGGACTAGCGATGGCTCCATACAGAACGAAGCTCAGTTCC +
Preference number: 5 (lower is better)
Translates to: VGTRMPEIACCKSVG*SGLAMAPYRTKLSS
Trigger: GGAACTGAGCTTCGTTCTGTATGGAGCCATCGCTAGTCCGGAGCACCCAACCGACTTACAGCATGCAATTTCAGGCATCCTGGTTCCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp AGAGGACCTGGGTTCAATTCCCGGTACCCACACAGTGGCTTACAACTATCCGTAAACTTCCTGTCCCCCTaGTCCACACAGGGCGTGTAC +
Preference number: 5 (lower is better)
Translates to: RGPGFNSRYPHSGLQLSVNFLSP*STQGVY
Trigger: GTACACGCCCTGTGTGGACAAGGGGGACAGGAAGTT...TACGGATAGTTGTAAGCCACTGTGTGGGTACCGGGAATTGAACCCAGGTCCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 90 bp CCCACATCCGAGAGTTGTCCCTGTGTGCCTTCACTTCGCTGGCATTaGCCACTCTACCTCGAAAGGGTCCAAATCTCACTCCTTTGGCAA +
Preference number: 5 (lower is better)
Translates to: PTSESCPCVPSLRWH*PLYLERVQISLLWQ
Trigger: TTGCCAAAGGAGTGAGATTTGGACCCTTTCGAGGTAGAGTGGTCAATGCCAGCGAAGTGAAGGCACACAGGGACAACTCTCGGATGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp AGAGGACCTGGGTTCAATTCCCGGTACCCACACAGTGGCTTACAACTATCCGTAGCCGAGGACCAAATTTaGGTTGCTGGAACCGCTGCT +
Preference number: 5 (lower is better)
Translates to: RGPGFNSRYPHSGLQLSVAEDQI*VAGTAA
Trigger: AGCAGCGGTTCCAGCAACCAAAATTTGGTCCTCGGC...TACGGATAGTTGTAAGCCACTGTGTGGGTACCGGGAATTGAACCCAGGTCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp AGGACCTGGGTTCAATTCCCGGTACCCACACAGTGGCTTACAACTATCCGTAAATCCTCCTCTGTGAAGTaGAAGCCGCAAAACGGCAGC +
Preference number: 5 (lower is better)
Translates to: RTWVQFPVPTQWLTTIRKSSSVK*KPQNGS
Trigger: GCTGCCGTTTTGCGGCTTCAACTTCACAGAGGAGGA...TTTACGGATAGTTGTAAGCCACTGTGTGGGTACCGGGAATTGAACCCAGGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS GCA 90 bp GTGACCATCTTCAAAAATTTCCCACATCCGAGAGTTGTCCCTGTGTaGCTTCACTTCGCTGGCATTGACCACTCTACCTCGAAAGGGTCC +
Preference number: 5 (lower is better)
Translates to: VTIFKNFPHPRVVPV*LHFAGIDHSTSKGS
Trigger: GGACCCTTTCGAGGTAGAGTGGTCAATGCCAGCGAAGTGAAGGCACACAGGGACAACTCTCGGATGTGGGAAATTTTTGAAGATGGTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp ACTCCTGGTCTGAATGGATTCCATAAGGTTTGGAGCTTCAGATCAACTACTCCACAGCTGCTGGCCTCCTaGCTCAGTGACACGGAGGTT +
Preference number: 5 (lower is better)
Translates to: TPGLNGFHKVWSFRSTTPQLLAS*LSDTEV
Trigger: AACCTCCGTGTCACTGAGCAAGGAGGCCAGCAGCTG...TGGAGTAGTTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 90 bp GTGCTTGTTCAGGCTGGAAGACTGAGAAAAACTTTTCCCACAGGTTaGACACAGGTAGGGCCGGTGCCTCTCATGGACGTGAAGAATATG +
Preference number: 5 (lower is better)
Translates to: VLVQAGRLRKTFPTG*TQVGPVPLMDVKNM
Trigger: CATATTCTTCACGTCCATGAGAGGCACCGGCCCTACCTGTGTTCAACCTGTGGGAAAAGTTTTTCTCAGTCTTCCAGCCTGAACAAGCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp GACAGGAGAGGGGGAACCTTTTCTTCTTTAATCACAAGACCCAGGACTTTATTCAGCAGGTTCTGCTCCTaGGGGAACCGAGCACAGTTG +
Preference number: 5 (lower is better)
Translates to: DRRGGTFSSLITRPRTLFSRFCS*GNRAQL
Trigger: CAACTGTGCTCGGTTCCCCAAGGAGCAGAACCTGCT...GAATAAAGTCCTGGGTCTTGTGATTAAAGAAGAAAAGGTTCCCCCTCTCCTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 90 bp AAATCGTGGTACTTCGGGAGTGAATTGAGGAATTCGGTTCCATGGTaGCAATTTGTACCAGGGCAGATTGTAGAGCGGCTCGCTCTGAAC +
Preference number: 5 (lower is better)
Translates to: KSWYFGSELRNSVPW*QFVPGQIVERLALN
Trigger: GTTCAGAGCGAGCCGCTCTACAATCTGCCCTGGTACAAATTGTCACCATGGAACCGAATTCCTCAATTCACTCCCGAAGTACCACGATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp CCTGGTCTGAATGGATTCCATAAGGTTTGGAGCTTCAGATCAACTACTCCATTCTCCCACATCCGAGAGTaGTCCCTGTGTGCCTTCACT +
Preference number: 5 (lower is better)
Translates to: PGLNGFHKVWSFRSTTPFSHIRE*SLCAFT
Trigger: AGTGAAGGCACACAGGGACAACTCTCGGATGTGGGA...GAATGGAGTAGTTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp TATAGGACAAATTTAAAGCCAGCTTGGGGGTGGGAGAGAAAGAGAGAGAGACCAAACTTTTCCCACAGGTaGAACACAGGTAGGGCCGGT +
Preference number: 5 (lower is better)
Translates to: YRTNLKPAWGWERKRERPNFSHR*NTGRAG
Trigger: ACCGGCCCTACCTGTGTTCAACCTGTGGGAAAAGTT...TGGTCTCTCTCTCTTTCTCTCCCACCCCCAAGCTGGCTTTAAATTTGTCCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 90 bp GACATCCAGTTCCCAGAACCTTTGCCGTCGATAAAATGGCTCAGGTaGCCATCTTCAAAAATTTCCCACATCCGAGAGTTGTCCCTGTGT +
Preference number: 5 (lower is better)
Translates to: DIQFPEPLPSIKWLR*PSSKISHIRELSLC
Trigger: ACACAGGGACAACTCTCGGATGTGGGAAATTTTTGAAGATGGTCACCTGAGCCATTTTATCGACGGCAAAGGTTCTGGGAACTGGATGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp ACTCCTGGTCTGAATGGATTCCATAAGGTTTGGAGCTTCAGATCAACTACTCCAATAAAATATCTGCCCTaGGTGCTGCACGGCCAGCAG +
Preference number: 5 (lower is better)
Translates to: TPGLNGFHKVWSFRSTTPIKYLP*VLHGQQ
Trigger: CTGCTGGCCGTGCAGCACCAAGGGCAGATATTTTAT...TGGAGTAGTTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp ACTCCTGGTCTGAATGGATTCCATAAGGTTTGGAGCTTCAGATCAACTACTCCAGGCATAGAAAGCCTCTaGATCCAGGAAGCCTTTCCC +
Preference number: 5 (lower is better)
Translates to: TPGLNGFHKVWSFRSTTPGIESL*IQEAFP
Trigger: GGGAAAGGCTTCCTGGATCAAGAGGCTTTCTATGCC...TGGAGTAGTTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp CCTGGTCTGAATGGATTCCATAAGGTTTGGAGCTTCAGATCAACTACTCCATTCCCAAATCTCACTCCTTaGGCAATGAAGTCGCTGCAG +
Preference number: 5 (lower is better)
Translates to: PGLNGFHKVWSFRSTTPFPNLTP*AMKSLQ
Trigger: CTGCAGCGACTTCATTGCCAAAGGAGTGAGATTTGG...GAATGGAGTAGTTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp TTTCCTTCTCTGTTGGTAAAAGTTAGACATCAACAAGAATTGCCAGTCTTCCTGTGCCAGTTTCCAAGGTaGAAACTCCTCCTCGGTGGT +
Preference number: 5 (lower is better)
Translates to: FPSLLVKVRHQQELPVFLCQFPR*KLLLGG
Trigger: ACCACCGAGGAGGAGTTTCAACCTTGGAAACTGGCA...CAGGAAGACTGGCAATTCTTGTTGATGTCTAACTTTTACCAACAGAGAAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS-3UTR CAA 90 bp CCTGGTCTGAATGGATTCCATAAGGTTTGGAGCTTCAGATCAACTACTCCATTCCTTTTCAAAGGATCTTaGGCAGAGAGAACACGGAAA +
Preference number: 5 (lower is better)
Translates to: PGLNGFHKVWSFRSTTPFLFKGS*AERTRK
Trigger: TTTCCGTGTTCTCTCTGCCAAAGATCCTTTGAAAAG...GAATGGAGTAGTTGATCTGAAGCTCCAAACCTTATGGAATCCATTCAGACCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp GGGGATGGCAGAAGTAAATTTTCAGCTTCCCACCTCTaGCCACTGATTTGGCCACCGCCGCCGCCGAGGACC +
Preference number: 6 (lower is better)
Translates to: GDGRSKFSASHL*PLIWPPPPPRT
Trigger: GGTCCTCGGCGGCGGCGGTGGCCAAATCAGTGGTCAGAGGTGGGAAGCTGAAAATTTACTTCTGCCATCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp CAGAGGACTCAGACAGCTGCTGGCCTCCTTGCTCAGTaGCACGGAGGTTCATGGGAACGCCCAGGAACTTCT +
Preference number: 6 (lower is better)
Translates to: QRTQTAAGLLAQ*HGGSWERPGTS
Trigger: AGAAGTTCCTGGGCGTTCCCATGAACCTCCGTGTCACTGAGCAAGGAGGCCAGCAGCTGTCTGAGTCCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp ACAAATATCGCAGGAGCTACGGCCATTGTCCTTGTGTaGGCGCCGGACGTGGCTGTCGTGGGCAGCATGAGA +
Preference number: 6 (lower is better)
Translates to: TNIAGATAIVLV*APDVAVVGSMR
Trigger: TCTCATGCTGCCCACGACAGCCACGTCCGGCGCTCACACAAGGACAATGGCCGTAGCTCCTGCGATATTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS GCA 72 bp AAGAGGGGCCATCGCCTGGGACTCAAGCACTGCAGCTaGCAGTTTCCAAGGTTGAAACTCCTCCTCGGTGGT +
Preference number: 6 (lower is better)
Translates to: KRGHRLGLKHCS*QFPRLKLLLGG
Trigger: ACCACCGAGGAGGAGTTTCAACCTTGGAAACTGGCAGCTGCAGTGCTTGAGTCCCAGGCGATGGCCCCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CAA 72 bp AGACTCTTCAGAGGACTCAGACAGCTGCTGGCCTCCTaGCTCAGTGACACGGAGGTTCATGGGAACGCCCAG +
Preference number: 6 (lower is better)
Translates to: RLFRGLRQLLAS*LSDTEVHGNAQ
Trigger: CTGGGCGTTCCCATGAACCTCCGTGTCACTGAGCAAGGAGGCCAGCAGCTGTCTGAGTCCTCTGAAGAGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CAA 72 bp AAGCCTTTCCCACAAATATCGCAGGAGCTACGGCCATaGTCCTTGTGTGAGCGCCGGACGTGGCTGTCGTGG +
Preference number: 6 (lower is better)
Translates to: KPFPQISQELRP*SLCERRTWLSW
Trigger: CCACGACAGCCACGTCCGGCGCTCACACAAGGACAATGGCCGTAGCTCCTGCGATATTTGTGGGAAAGGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS GCA 72 bp AGCATCAAGAGGGGCCATCGCCTGGGACTCAAGCACTaGAGCTGCCAGTTTCCAAGGTTGAAACTCCTCCTC +
Preference number: 6 (lower is better)
Translates to: SIKRGHRLGLKH*SCQFPRLKLLL
Trigger: GAGGAGGAGTTTCAACCTTGGAAACTGGCAGCTGCAGTGCTTGAGTCCCAGGCGATGGCCCCTCTTGATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CCA 72 bp GCAGTCATCCGAAAAGCATCAAGAGGGGCCATCGCCTaGGACTCAAGCACTGCAGCTGCCAGTTTCCAAGGT +
Preference number: 6 (lower is better)
Translates to: AVIRKASRGAIA*DSSTAAASFQG
Trigger: ACCTTGGAAACTGGCAGCTGCAGTGCTTGAGTCCCAGGCGATGGCCCCTCTTGATGCTTTTCGGATGACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp TGGGACTCAAGCACTGCAGCTGCCAGTTTCCAAGGTTaGAACTCCTCCTCGGTGGTGGCGAGGTTCCTAAAG +
Preference number: 6 (lower is better)
Translates to: WDSSTAAASFQG*NSSSVVARFLK
Trigger: CTTTAGGAACCTCGCCACCACCGAGGAGGAGTTTCAACCTTGGAAACTGGCAGCTGCAGTGCTTGAGTCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp CGCCAAAGTGTGGCACATCACCAAATGAGGTCTGCATaGGGCAGAGACCTTCCGGAAGCTGGAGGGAGTCTT +
Preference number: 6 (lower is better)
Translates to: RQSVAHHQMRSA*GRDLPEAGGSL
Trigger: AAGACTCCCTCCAGCTTCCGGAAGGTCTCTGCCTCATGCAGACCTCATTTGGTGATGTGCCACACTTTGGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp GCTGCAGAACACGCCAAAGTGTGGCACATCACCAAATaGGGTCTGCATGAGGCAGAGACCTTCCGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: AAEHAKVWHITK*GLHEAETFRKL
Trigger: CAGCTTCCGGAAGGTCTCTGCCTCATGCAGACCTCATTTGGTGATGTGCCACACTTTGGCGTGTTCTGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp CCAGCAGGTTCTGCTCCTTGGGGAACCGAGCACAGTTaGCATAGGACATCCAGTTCCCAGAACCTTTGCCGT +
Preference number: 6 (lower is better)
Translates to: PAGSAPWGTEHS*HRTSSSQNLCR
Trigger: ACGGCAAAGGTTCTGGGAACTGGATGTCCTATGTCAACTGTGCTCGGTTCCCCAAGGAGCAGAACCTGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp TTGTGTGAGCGCCGGACGTGGCTGTCGTGGGCAGCATaGGATGCAAAGGCTTTACCACAATGCTTGCACTTG +
Preference number: 6 (lower is better)
Translates to: LCERRTWLSWAA*DAKALPQCLHL
Trigger: CAAGTGCAAGCATTGTGGTAAAGCCTTTGCATCTCATGCTGCCCACGACAGCCACGTCCGGCGCTCACACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS GCA 72 bp AACACGCCAAAGTGTGGCACATCACCAAATGAGGTCTaGATGAGGCAGAGACCTTCCGGAAGCTGGAGGGAG +
Preference number: 6 (lower is better)
Translates to: NTPKCGTSPNEV*MRQRPSGSWRE
Trigger: CTCCCTCCAGCTTCCGGAAGGTCTCTGCCTCATGCAGACCTCATTTGGTGATGTGCCACACTTTGGCGTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CCA 72 bp TGGATCCGGAGGCGGTCGCGCTTTTCAAAGGATCTTTaGCAGAGAGAACACGGAAACTTCCTGTCCCCCTTG +
Preference number: 6 (lower is better)
Translates to: WIRRRSRFSKDL*QREHGNFLSPL
Trigger: CAAGGGGGACAGGAAGTTTCCGTGTTCTCTCTGCCAAAGATCCTTTGAAAAGCGCGACCGCCTCCGGATCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp CAGGCTGGAAGACTGAGAAAAACTTTTCCCACAGGTTaGACACAGGTAGGGCCGGTGCCTCTCATGGACGTG +
Preference number: 6 (lower is better)
Translates to: QAGRLRKTFPTG*TQVGPVPLMDV
Trigger: CACGTCCATGAGAGGCACCGGCCCTACCTGTGTTCAACCTGTGGGAAAAGTTTTTCTCAGTCTTCCAGCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CAA 72 bp ATGGATCCGGAGGCGGTCGCGCTTTTCAAAGGATCTTaGGCAGAGAGAACACGGAAACTTCCTGTCCCCCTT +
Preference number: 6 (lower is better)
Translates to: MDPEAVALFKGS*AERTRKLPVPL
Trigger: AAGGGGGACAGGAAGTTTCCGTGTTCTCTCTGCCAAAGATCCTTTGAAAAGCGCGACCGCCTCCGGATCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CAA 90 bp TCCCACATCCGAGAGTTGTCCCTGTGTGCCTTCACTTCGCTGGCATaGACCACTCTACCTCGAAAGGGTCCAAATCTCACTCCTTTGGCA +
Preference number: 6 (lower is better)
Translates to: SHIRELSLCAFTSLA*TTLPRKGPNLTPLA
Trigger: TGCCAAAGGAGTGAGATTTGGACCCTTTCGAGGTAGAGTGGTCAATGCCAGCGAAGTGAAGGCACACAGGGACAACTCTCGGATGTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS GCA 72 bp AGGATGCCTGAAATTGCATGCTGTAAGTCGGTTGGGTaGTCCGGACTAGCGATGGCTCCATACAGAACGAAG +
Preference number: 6 (lower is better)
Translates to: RMPEIACCKSVG*SGLAMAPYRTK
Trigger: CTTCGTTCTGTATGGAGCCATCGCTAGTCCGGAGCACCCAACCGACTTACAGCATGCAATTTCAGGCATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CAA 72 bp CTTTGGCAGAGAGAACACGGAAACTTCCTGTCCCCCTaGTCCACACAGGGCGTGTACTTCAGGTGCTTATCT +
Preference number: 6 (lower is better)
Translates to: LWQREHGNFLSP*STQGVYFRCLS
Trigger: AGATAAGCACCTGAAGTACACGCCCTGTGTGGACAAGGGGGACAGGAAGTTTCCGTGTTCTCTCTGCCAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CAA 90 bp GTGAAGAATATGGATCCGGAGGCGGTCGCGCTTTTCAAAGGATCTTaGGCAGAGAGAACACGGAAACTTCCTGTCCCCCTTGTCCACACA +
Preference number: 6 (lower is better)
Translates to: VKNMDPEAVALFKGS*AERTRKLPVPLVHT
Trigger: TGTGTGGACAAGGGGGACAGGAAGTTTCCGTGTTCTCTCTGCCAAAGATCCTTTGAAAAGCGCGACCGCCTCCGGATCCATATTCTTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CAA 90 bp CTGGCATTGACCACTCTACCTCGAAAGGGTCCAAATCTCACTCCTTaGGCAATGAAGTCGCTGCAGAACACGCCAAAGTGTGGCACATCA +
Preference number: 6 (lower is better)
Translates to: LALTTLPRKGPNLTP*AMKSLQNTPKCGTS
Trigger: TGATGTGCCACACTTTGGCGTGTTCTGCAGCGACTTCATTGCCAAAGGAGTGAGATTTGGACCCTTTCGAGGTAGAGTGGTCAATGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp TACCTCGAAAGGGTCCAAATCTCACTCCTTTGGCAATaGAGTCGCTGCAGAACACGCCAAAGTGTGGCACAT +
Preference number: 6 (lower is better)
Translates to: YLERVQISLLWQ*SRCRTRQSVAH
Trigger: ATGTGCCACACTTTGGCGTGTTCTGCAGCGACTTCATTGCCAAAGGAGTGAGATTTGGACCCTTTCGAGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CAA 72 bp ACCACTCTACCTCGAAAGGGTCCAAATCTCACTCCTTaGGCAATGAAGTCGCTGCAGAACACGCCAAAGTGT +
Preference number: 6 (lower is better)
Translates to: TTLPRKGPNLTP*AMKSLQNTPKC
Trigger: ACACTTTGGCGTGTTCTGCAGCGACTTCATTGCCAAAGGAGTGAGATTTGGACCCTTTCGAGGTAGAGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp TACTTCGGGAGTGAATTGAGGAATTCGGTTCCATGGTaGCAATTTGTACCAGGGCAGATTGTAGAGCGGCTC +
Preference number: 6 (lower is better)
Translates to: YFGSELRNSVPW*QFVPGQIVERL
Trigger: GAGCCGCTCTACAATCTGCCCTGGTACAAATTGTCACCATGGAACCGAATTCCTCAATTCACTCCCGAAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS CAA 72 bp GGTTTTATGAAGCCTCATGTGGGCATAGAAAGCCTCTaGATCCAGGAAGCCTTTCCCACAAATATCGCAGGA +
Preference number: 6 (lower is better)
Translates to: GFMKPHVGIESL*IQEAFPTNIAG
Trigger: TCCTGCGATATTTGTGGGAAAGGCTTCCTGGATCAAGAGGCTTTCTATGCCCACATGAGGCTTCATAAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7
CDS TCA 72 bp TTCCCAGAACCTTTGCCGTCGATAAAATGGCTCAGGTaGCCATCTTCAAAAATTTCCCACATCCGAGAGTTG +
Preference number: 6 (lower is better)
Translates to: FPEPLPSIKWLR*PSSKISHIREL
Trigger: CAACTCTCGGATGTGGGAAATTTTTGAAGATGGTCACCTGAGCCATTTTATCGACGGCAAAGGTTCTGGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047577.7