RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRDM13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040478

Ensembl transcript IDs: ENSMUST00000076206.11, ENSMUST00000095141.4

Found 213 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AACTGGAGCGGCTCACTGTTCCTAATCCGACACCATCCCCAGAATTaGGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCT +
Preference number: 1 (lower is better)
Translates to: NWSGSLFLIRHHPQN*DNINEALLVPTSLS
Trigger: AGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGATGGTGTCGGATTAGGAACAGTGAGCCGCTCCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR TCA 90 bp ACTGTTCCTAATCCGACACCATCCCCAGAATTGCGACAATATCAATaGAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTC +
Preference number: 1 (lower is better)
Translates to: TVPNPTPSPELRQYQ*SPSCPHFTLYCVLV
Trigger: GACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGATGGTGTCGGATTAGGAACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR TCA 90 bp TATATTGACGTGATCCTGAACCTCAAGGCCAGAATGCTTTCAGAATaGGAGGCTATGCCAGAGTCTAGGGGTCTTAATGATAGAGAACCA +
Preference number: 1 (lower is better)
Translates to: YIDVILNLKARMLSE*EAMPESRGLNDREP
Trigger: TGGTTCTCTATCATTAAGACCCCTAGACTCTGGCATAGCCTCTCATTCTGAAAGCATTCTGGCCTTGAGGTTCAGGATCACGTCAATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR-3UTR GCA 90 bp CCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATCTGTGTCCTCGTCCCTaGTCAGTCCCTGGAAGGCGC +
Preference number: 2 (lower is better)
Translates to: PFVKLCSTRELERLTVPNLCPRP*SVPGRR
Trigger: GCGCCTTCCAGGGACTGAGCAGGGACGAGGACACAG...ATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR-3UTR GCA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACACCTCAAGGCCAGAATaGTTTCAGAATGAGAGGCTA +
Preference number: 2 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNTSRPE*FQNERL
Trigger: TAGCCTCTCATTCTGAAAGCATTCTGGCCTTGAGGT...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR-3UTR TCA 90 bp TTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCAGAATGCTTTCAGAATaGGAGGCTATGCCAGAGTCT +
Preference number: 2 (lower is better)
Translates to: LQIAQNGSKGKVLYPLYIRMLSE*EAMPES
Trigger: AGACTCTGGCATAGCCTCTCATTCTGAAAGCATTCT...GATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR-3UTR GCA 90 bp ACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACACCATCCCCAGAATTaGGACAATATCAATGAAGCC +
Preference number: 2 (lower is better)
Translates to: TIYSMWQGVFFDRRTDRKHHPQN*DNINEA
Trigger: GGCTTCATTGATATTGTCGCAATTCTGGGGATGGTG...TTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR-3UTR GCA 90 bp AATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCGTTCATTATAAAACAACCTCAAGGCCAGAATaGTTTCAGAATGAGAGGCTA +
Preference number: 2 (lower is better)
Translates to: NGSKGKVLYPLYIVHYKTTSRPE*FQNERL
Trigger: TAGCCTCTCATTCTGAAAGCATTCTGGCCTTGAGGT...TGTTTTATAATGAACGATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR-3UTR CCA 90 bp AATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCGTTCATTATAAAACACTATGTGCTGTTAGTTaGCTGTGTTTCTTCAACCCT +
Preference number: 2 (lower is better)
Translates to: NGSKGKVLYPLYIVHYKTLCAVS*LCFFNP
Trigger: AGGGTTGAAGAAACACAGCCAACTAACAGCACATAG...TGTTTTATAATGAACGATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR-3UTR GCA 90 bp CAACTTGACCAATTTATACATCCACTACCACGATATACTCAATGTGGCAAGGAGCTGTTTTGCTTGCTATaGAGTGAAATGCTTAACATA +
Preference number: 2 (lower is better)
Translates to: QLDQFIHPLPRYTQCGKELFCLL*SEMLNI
Trigger: TATGTTAAGCATTTCACTGCATAGCAAGCAAAACAG...CTCCTTGCCACATTGAGTATATCGTGGTAGTGGATGTATAAATTGGTCAAGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR CCA 72 bp TTCAACCCTTCGTTAAACTTTGCTCCACTCGAGAACTaGAGCGGCTCACTGTTCCTAATCCGACACCATCCC +
Preference number: 3 (lower is better)
Translates to: FNPSLNFAPLEN*SGSLFLIRHHP
Trigger: GGGATGGTGTCGGATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGGTTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR GCA 72 bp GGCTCACTGTTCCTAATCCGACACCATCCCCAGAATTaGGACAATATCAATGAAGCCCTTCTTGTCCCCACT +
Preference number: 3 (lower is better)
Translates to: GSLFLIRHHPQN*DNINEALLVPT
Trigger: AGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGATGGTGTCGGATTAGGAACAGTGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR-3UTR CAA 90 bp CCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATTCAATGAAGCCCTTCTaGTCCCCACTTCACTCTCTA +
Preference number: 3 (lower is better)
Translates to: PFVKLCSTRELERLTVPNSMKPF*SPLHSL
Trigger: TAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGA...ATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR TCA 72 bp AATCCGACACCATCCCCAGAATTGCGACAATATCAATaGAGCCCTTCTTGTCCCCACTTCACTCTCTACTGT +
Preference number: 3 (lower is better)
Translates to: NPTPSPELRQYQ*SPSCPHFTLYC
Trigger: ACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGATGGTGTCGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR TCA 72 bp GTGATCCTGAACCTCAAGGCCAGAATGCTTTCAGAATaGGAGGCTATGCCAGAGTCTAGGGGTCTTAATGAT +
Preference number: 3 (lower is better)
Translates to: VILNLKARMLSE*EAMPESRGLND
Trigger: ATCATTAAGACCCCTAGACTCTGGCATAGCCTCTCATTCTGAAAGCATTCTGGCCTTGAGGTTCAGGATCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR GCA 72 bp ACCTCAAGGCCAGAATGCTTTCAGAATGAGAGGCTATaGCAGAGTCTAGGGGTCTTAATGATAGAGAACCAC +
Preference number: 3 (lower is better)
Translates to: TSRPECFQNERL*QSLGVLMIENH
Trigger: GTGGTTCTCTATCATTAAGACCCCTAGACTCTGGCATAGCCTCTCATTCTGAAAGCATTCTGGCCTTGAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR TCA 72 bp AAATCATCACCTTTGAGCGCACTGAGATGCTTATATTaGCGTGATCCTGAACCTCAAGGCCAGAATGCTTTC +
Preference number: 3 (lower is better)
Translates to: KSSPLSALRCLY*RDPEPQGQNAF
Trigger: GAAAGCATTCTGGCCTTGAGGTTCAGGATCACGTCAATATAAGCATCTCAGTGCGCTCAAAGGTGATGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR GCA 72 bp GGTGTGTGGGTGTCACATCTACTGTTTTGCTTGCTATaGAGTGAAATGCTTAACATAAAATTCACACGGAAC +
Preference number: 3 (lower is better)
Translates to: GVWVSHLLFCLL*SEMLNIKFTRN
Trigger: GTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCACACACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR CCA 72 bp CCAATTTATACATCCACTACCACGATATACTCAATGTaGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGG +
Preference number: 3 (lower is better)
Translates to: PIYTSTTTIYSM*QGVFFDRRTDR
Trigger: CCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGTGGTAGTGGATGTATAAATTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR-3UTR CAA 90 bp CTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTCAATGAAGCCCTTCTaGTCCCCACTTCACTCTCTA +
Preference number: 3 (lower is better)
Translates to: LFCLLCSEMLNIKFTRNISMKPF*SPLHSL
Trigger: TAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGA...GATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR GCA 72 bp ACGGAAACAGGTGTGTGGGTGTCACATCTACTGTTTTaGTTGCTATGCAGTGAAATGCTTAACATAAAATTC +
Preference number: 3 (lower is better)
Translates to: TETGVWVSHLLF*LLCSEMLNIKF
Trigger: GAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCACACACCTGTTTCCGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp TCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCCCTGGAAGGCGCCCGCCGTCGAGGGGCTaGAGCGCGCAGCGCTCCACA +
Preference number: 4 (lower is better)
Translates to: SPLHSLLCPRPCSVPGRRPPSRG*SAQRST
Trigger: TGTGGAGCGCTGCGCGCTGCAGCCCCTCGACGGCGG...GCGCCTTCCAGGGACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp AAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCGACGCCTCTTCCGGGTaGCCGGCGAGCAGGGGGAAG +
Preference number: 4 (lower is better)
Translates to: KPFLSPLHSLLCPRPCSVDASSG*PASRGK
Trigger: CTTCCCCCTGCTCGCCGGCCACCCGGAAGAGGCGTC...GACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp AAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCTGGCGGGACTTGACGTaGCGCTCCAGGTCTCGGCGG +
Preference number: 4 (lower is better)
Translates to: KPFLSPLHSLLCPRPCSVWRDLT*RSRSRR
Trigger: CCGCCGAGACCTGGAGCGTCACGTCAAGTCCCGCCA...GACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp CCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATCACGCCTGGGCGAGCTaGGCGGCCGGAGCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: PFVKLCSTRELERLTVPNHAWAS*AAGAWG
Trigger: ACCCCAAGCTCCGGCCGCTCAGCTCGCCCAGGCGTG...ATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCCCTGGAAGGCGCTCCGCATGTGGATCTTaGGCCCGTACTTGCGCGAGT +
Preference number: 4 (lower is better)
Translates to: SPLHSLLCPRPCSVPGRRSACGS*ARTCAS
Trigger: ACTCGCGCAAGTACGGGCTCAAGATCCACATGCGGA...GCGCCTTCCAGGGACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATCGGGCCGCGTGCTCCTaGGGCAGGAAAGCACGGCCC +
Preference number: 4 (lower is better)
Translates to: PFVKLCSTRELERLTVPNRAACS*GRKARP
Trigger: GGGCCGTGCTTTCCTGCCCCAGGAGCACGCGGCCCG...ATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp AAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCAGCCGAGCGCACGCCTaGGTAGAATGGCAGGCCTCC +
Preference number: 4 (lower is better)
Translates to: KPFLSPLHSLLCPRPCSVSRAHA*VEWQAS
Trigger: GGAGGCCTGCCATTCTACCCAGGCGTGCGCTCGGCT...GACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp ATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCGCCGCCACTACGGCTaGAGGCAGCGTCCCCGAGTC +
Preference number: 4 (lower is better)
Translates to: INEALLVPTSLSTVSSSLRRHYG*RQRPRV
Trigger: GACTCGGGGACGCTGCCTCCAGCCGTAGTGGCGGCG...CAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp GAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTAGCGGTAGGGCGTATTaGCCTCGGCGTGGAGTCGGA +
Preference number: 4 (lower is better)
Translates to: EALLVPTSLSTVSSSLLSSGRAY*PRRGVG
Trigger: TCCGACTCCACGCCGAGGGCAATACGCCCTACCGCT...ACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CAACCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTCCAGGAGCAGCCGCATaGAGAGGAGGGACCCGCACC +
Preference number: 4 (lower is better)
Translates to: QPFVKLCSTRELERLTVPPGAAA*RGGTRT
Trigger: GGTGCGGGTCCCTCCTCTGCATGCGGCTGCTCCTGG...AGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGGTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CGGAAACAGGTGTGTGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAACCGCCGTCGAGGGGCTaGAGCGCGCAGCGCTCCACA +
Preference number: 4 (lower is better)
Translates to: RKQVCGCHIYCFACYAVKPPSRG*SAQRST
Trigger: TGTGGAGCGCTGCGCGCTGCAGCCCCTCGACGGCGG...TTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCACACACCTGTTTCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp AAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCCCACTGAGGACGCAGTaGAACCGCAGGTGTGCCTTG +
Preference number: 4 (lower is better)
Translates to: KPFLSPLHSLLCPRPCSVPLRTQ*NRRCAL
Trigger: CAAGGCACACCTGCGGTTCCACTGCGTCCTCAGTGG...GACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp AAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCGCTGCTGTGTGTGCATaGCGATCTCGCGGTCGATGC +
Preference number: 4 (lower is better)
Translates to: KPFLSPLHSLLCPRPCSVAAVCA*RSRGRC
Trigger: GCATCGACCGCGAGATCGCCATGCACACACAGCAGC...GACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp CGGAAACAGGTGTGTGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAACAGAGGGGAGCCCCCTaGCTCGTCCACCAGCTCCCC +
Preference number: 4 (lower is better)
Translates to: RKQVCGCHIYCFACYAVKQRGAP*LVHQLP
Trigger: GGGGAGCTGGTGGACGAGTCAGGGGGCTCCCCTCTG...TTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCACACACCTGTTTCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp ACCACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGGGCCCCCGCCGCCACTaGGGACGCAGTGGAACCGCA +
Preference number: 4 (lower is better)
Translates to: TTIYSMWQGVFFDRRTDRGPRRH*GRSGTA
Trigger: TGCGGTTCCACTGCGTCCTCAGTGGCGGCGGGGGCC...CCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp AAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCTGGGCCCTGGTTCCCTaGGATCTGACAGGTACTTGC +
Preference number: 4 (lower is better)
Translates to: KPFLSPLHSLLCPRPCSVWALVP*DLTGTC
Trigger: GCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCCA...GACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp ATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCGATCTCGCGGTCGATaGTGGCCAGGGAGCCCAGTT +
Preference number: 4 (lower is better)
Translates to: INEALLVPTSLSTVSSSLRSRGR*WPGSPV
Trigger: AACTGGGCTCCCTGGCCAGCATCGACCGCGAGATCG...CAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp ATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGGCGACTCTTCCCGGCTaGCATCTCGGACAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: INEALLVPTSLSTVSSSLATLPG*HLGQLL
Trigger: CAGCAGCTGTCCGAGATGGCAGCCGGGAAGAGTCGC...CAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp ATCCCCAGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTTGGCGGGACTTGACGTaGCGCTCCAGGTCTCGGCGG +
Preference number: 4 (lower is better)
Translates to: IPRIATISMKPFLSPLHSWRDLT*RSRSRR
Trigger: CCGCCGAGACCTGGAGCGTCACGTCAAGTCCCGCCA...AGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATGCAAGCCAGCCGGGATaGAGCAGTCAGCGTTCACGC +
Preference number: 4 (lower is better)
Translates to: PFVKLCSTRELERLTVPNASQPG*SSQRSR
Trigger: GCGTGAACGCTGACTGCTGCATCCCGGCTGGCTTGC...ATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp TTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATCCGCGATCTCGCGGTCGATaGTGGCCAGGGAGCCCAGTT +
Preference number: 4 (lower is better)
Translates to: FVKLCSTRELERLTVPNPRSRGR*WPGSPV
Trigger: AACTGGGCTCCCTGGCCAGCATCGACCGCGAGATCG...CGGATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp ATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGAGCTCTTCCCCAGGCTaGACGTCTCGCAATGCCCGA +
Preference number: 4 (lower is better)
Translates to: INEALLVPTSLSTVSSSLSSSPG*TSRNAR
Trigger: TCGGGCATTGCGAGACGTCCAGCCTGGGGAAGAGCT...CAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp AAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCGTGTGCGTCCGCATGTaGATCTTGAGCCCGTACTTG +
Preference number: 4 (lower is better)
Translates to: KPFLSPLHSLLCPRPCSVVCVRM*ILSPYL
Trigger: CAAGTACGGGCTCAAGATCCACATGCGGACGCACAC...GACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CAACCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTCACTGTCCTCGCTCTTaGGATCCCCAGGCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: QPFVKLCSTRELERLTVPHCPRS*DPQAPE
Trigger: CTCTGGAGCCTGGGGATCCCAAGAGCGAGGACAGTG...AGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp CAACTTGACCAATTTATACATCCACTACCACGATATACTCAATGTGGCAAGGAGCACGCCTGGGCGAGCTaGGCGGCCGGAGCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: QLDQFIHPLPRYTQCGKEHAWAS*AAGAWG
Trigger: ACCCCAAGCTCCGGCCGCTCAGCTCGCCCAGGCGTG...CTCCTTGCCACATTGAGTATATCGTGGTAGTGGATGTATAAATTGGTCAAGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp ATCCCCAGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTGGTCCGGCTGCTCCTTaGCCTTCTTGGGCGTTCCCC +
Preference number: 4 (lower is better)
Translates to: IPRIATISMKPFLSPLHSGPAAP*PSWAFP
Trigger: GGGGAACGCCCAAGAAGGGCAAGGAGCAGCCGGACC...AGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACGGCCTGTCTTGGGCTTaGCTGCCGCGCTCCCGCCAC +
Preference number: 4 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNGLSWA*LPRSRH
Trigger: GTGGCGGGAGCGCGGCAGGCAAGCCCAAGACAGGCC...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATAGTTCCGTGCATTGTTaGCACCGCCGCCAGGCAGAC +
Preference number: 4 (lower is better)
Translates to: PFVKLCSTRELERLTVPNSSVHC*HRRQAD
Trigger: GTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACT...ATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATGCTGCTGTGTGTGCATaGCGATCTCGCGGTCGATGC +
Preference number: 4 (lower is better)
Translates to: PFVKLCSTRELERLTVPNAAVCA*RSRGRC
Trigger: GCATCGACCGCGAGATCGCCATGCACACACAGCAGC...ATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACCCCGCTCCACGTGCTTaGAGGCCGACGCCTCTTCCG +
Preference number: 4 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNPAPRA*RPTPLP
Trigger: CGGAAGAGGCGTCGGCCTTCAAGCACGTGGAGCGGG...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATCCGGTCGGATGTGCTTGTTaGGATTGCTGGGGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: FVKLCSTRELERLTVPNPVGCAC*DCWGRR
Trigger: TCGGCGACCCCAGCAATCTCAACAAGCACATCCGAC...CGGATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp AGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGCTGGGTGGCGGGACTTaGCGTGACGCTCCAGGTCTC +
Preference number: 4 (lower is better)
Translates to: RIATISMKPFLSPLHSLLLGGGT*RDAPGL
Trigger: GAGACCTGGAGCGTCACGTCAAGTCCCGCCACCCAG...CAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp ACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAATGTCTTGGGCTTGCCTaGCGCGCTCCCGCCACCGCC +
Preference number: 4 (lower is better)
Translates to: TIYSMWQGVFFDRRTDRKCLGLA*RAPATA
Trigger: GGCGGTGGCGGGAGCGCGGCAGGCAAGCCCAAGACA...TTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp ACCACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGGGCGCACCAGCACCTTaGCGCAGAACTCGCAGCGGT +
Preference number: 4 (lower is better)
Translates to: TTIYSMWQGVFFDRRTDRGAPAP*RRTRSG
Trigger: ACCGCTGCGAGTTCTGCGGCAAGGTGCTGGTGCGCC...CCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp ATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGGTTCCTGGGGATTCCTaGCTGCCCGGATTAACCCTA +
Preference number: 4 (lower is better)
Translates to: INEALLVPTSLSTVSSSLVPGDS*LPGLTL
Trigger: TAGGGTTAATCCGGGCAGCCAGGAATCCCCAGGAAC...CAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp ATCCCCAGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTACAAGTGGCCTGTCTTaGGCTTGCCTGCCGCGCTCC +
Preference number: 4 (lower is better)
Translates to: IPRIATISMKPFLSPLHSTSGLS*ACLPRS
Trigger: GGAGCGCGGCAGGCAAGCCCAAGACAGGCCACTTGT...AGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CAACCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTGTATTGCCCTCGGCGTaGAGTCGGATGTGCTTGTTG +
Preference number: 4 (lower is better)
Translates to: QPFVKLCSTRELERLTVPVLPSA*SRMCLL
Trigger: CAACAAGCACATCCGACTCCACGCCGAGGGCAATAC...AGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp ATCCCCAGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCATCAGGCTCTGGCCTaGGTGGCGGGACTTGACGTG +
Preference number: 4 (lower is better)
Translates to: IPRIATISMKPFLSPLHSHQALA*VAGLDV
Trigger: CACGTCAAGTCCCGCCACCCAGGCCAGAGCCTGATG...AGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CGGAAACAGGTGTGTGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATTGGCCATCAGGCTCTaGCCTGGGTGGCGGGACTTG +
Preference number: 4 (lower is better)
Translates to: RKQVCGCHIYCFACYAVKLAIRL*PGWRDL
Trigger: CAAGTCCCGCCACCCAGGCCAGAGCCTGATGGCCAA...TTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCACACACCTGTTTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAAGGCCCCCGCCGCCACTaGGGACGCAGTGGAACCGCA +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKGPRRH*GRSGTA
Trigger: TGCGGTTCCACTGCGTCCTCAGTGGCGGCGGGGGCC...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp AATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCGTTCATTATAAAACACCAGGCCGGCCGGCTTaGAAGCCGAGCGCACGCCTG +
Preference number: 4 (lower is better)
Translates to: NGSKGKVLYPLYIVHYKTPGRPA*KPSARL
Trigger: CAGGCGTGCGCTCGGCTTTCAAGCCGGCCGGCCTGG...TGTTTTATAATGAACGATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAACCAGGCCGGCCGGCTTaGAAGCCGAGCGCACGCCTG +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKPGRPA*KPSARL
Trigger: CAGGCGTGCGCTCGGCTTTCAAGCCGGCCGGCCTGG...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp ATCCCCAGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTGCCTCGGGGTCGCTCTaGTCGTCAGTGAAGCAGACA +
Preference number: 4 (lower is better)
Translates to: IPRIATISMKPFLSPLHSASGSL*SSVKQT
Trigger: TGTCTGCTTCACTGACGATCAGAGCGACCCCGAGGC...AGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp GAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTTCCCCTTTCTCATCATaGGTTGGAGTCGCAGTTGTA +
Preference number: 4 (lower is better)
Translates to: EALLVPTSLSTVSSSLLSSPFSS*VGVAVV
Trigger: TACAACTGCGACTCCAACGCATGATGAGAAAGGGGA...ACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CAACCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTTGCGCGAGTACAGCTTaGCACAGTAGAGGCACAAGT +
Preference number: 4 (lower is better)
Translates to: QPFVKLCSTRELERLTVPCASTA*HSRGTS
Trigger: ACTTGTGCCTCTACTGTGGCAAGCTGTACTCGCGCA...AGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp AGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGAGCGGTAGGGCGTATTaGCCTCGGCGTGGAGTCGGA +
Preference number: 4 (lower is better)
Translates to: RIATISMKPFLSPLHSLLSGRAY*PRRGVG
Trigger: TCCGACTCCACGCCGAGGGCAATACGCCCTACCGCT...CAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACGGCGCACCAGCACCTTaGCGCAGAACTCGCAGCGGT +
Preference number: 4 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNGAPAP*RRTRSG
Trigger: ACCGCTGCGAGTTCTGCGGCAAGGTGCTGGTGCGCC...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp TTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATCCGTGCGCACCTTTTTCTTaGGCCCTGGTTCCCTGCGAT +
Preference number: 4 (lower is better)
Translates to: FVKLCSTRELERLTVPNPCAPFS*ALVPCD
Trigger: ATCGCAGGGAACCAGGGCCCAAGAAAAAGGTGCGCA...CGGATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCCGGGCCGCGTGCTCCTaGGGCAGGAAAGCACGGCCC +
Preference number: 4 (lower is better)
Translates to: LFCLLCSEMLNIKFTRNIRAACS*GRKARP
Trigger: GGGCCGTGCTTTCCTGCCCCAGGAGCACGCGGCCCG...GATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp AGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGGCTCCTTGCCCTTCTTaGGCGTTCCCCACTTGCCCG +
Preference number: 4 (lower is better)
Translates to: RIATISMKPFLSPLHSLLAPCPS*AFPTCP
Trigger: CGGGCAAGTGGGGAACGCCCAAGAAGGGCAAGGAGC...CAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCGGTACTTGCCCAGCTTaGAGGTGCCAGGCACCGGCC +
Preference number: 4 (lower is better)
Translates to: LQIAQNGSKGKVLYPLYIGTCPA*RCQAPA
Trigger: GGCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACC...GATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp ATCCCCAGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTTCCGCATGTGGATCTTaGGCCCGTACTTGCGCGAGT +
Preference number: 4 (lower is better)
Translates to: IPRIATISMKPFLSPLHSSACGS*ARTCAS
Trigger: ACTCGCGCAAGTACGGGCTCAAGATCCACATGCGGA...AGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp ATCCCCAGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTGGCACACTTTGCACTTaGGCGGCTTGTAGCCCGTGT +
Preference number: 4 (lower is better)
Translates to: IPRIATISMKPFLSPLHSGTLCT*AACSPC
Trigger: ACACGGGCTACAAGCCGCTCAAGTGCAAAGTGTGCC...AGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp CAACTTGACCAATTTATACATCCACTACCACGATATACTCAATGTGGCAAGGAGCTGGGTGGCGGGACTTaGCGTGACGCTCCAGGTCTC +
Preference number: 4 (lower is better)
Translates to: QLDQFIHPLPRYTQCGKELGGGT*RDAPGL
Trigger: GAGACCTGGAGCGTCACGTCAAGTCCCGCCACCCAG...CTCCTTGCCACATTGAGTATATCGTGGTAGTGGATGTATAAATTGGTCAAGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp ACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAAGGTCCGGCTGCTCCTTaGCCTTCTTGGGCGTTCCCC +
Preference number: 4 (lower is better)
Translates to: TIYSMWQGVFFDRRTDRKGPAAP*PSWAFP
Trigger: GGGGAACGCCCAAGAAGGGCAAGGAGCAGCCGGACC...TTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATGTCTTGGGCTTGCCTaGCGCGCTCCCGCCACCGCC +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKCLGLA*RAPATA
Trigger: GGCGGTGGCGGGAGCGCGGCAGGCAAGCCCAAGACA...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACGCTCCTTGCCCTTCTTaGGCGTTCCCCACTTGCCCG +
Preference number: 4 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNAPCPS*AFPTCP
Trigger: CGGGCAAGTGGGGAACGCCCAAGAAGGGCAAGGAGC...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAAGACGCCTCTTCCGGGTaGCCGGCGAGCAGGGGGAAG +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKDASSG*PASRGK
Trigger: CTTCCCCCTGCTCGCCGGCCACCCGGAAGAGGCGTC...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp ACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAATCTCGCGGTCGATGCTaGCCAGGGAGCCCAGTTCGG +
Preference number: 4 (lower is better)
Translates to: TIYSMWQGVFFDRRTDRKSRGRC*PGSPVR
Trigger: CCGAACTGGGCTCCCTGGCCAGCATCGACCGCGAGA...TTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp TCTTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCTCGCGGTCGATGCTaGCCAGGGAGCCCAGTTCGG +
Preference number: 4 (lower is better)
Translates to: SYRLHKMEARAKYCIHCTSRGRC*PGSPVR
Trigger: CCGAACTGGGCTCCCTGGCCAGCATCGACCGCGAGA...TGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAACGCCGCCACTACGGCTaGAGGCAGCGTCCCCGAGTC +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKRRHYG*RQRPRV
Trigger: GACTCGGGGACGCTGCCTCCAGCCGTAGTGGCGGCG...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp ACCACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGCACTGTCCTCGCTCTTaGGATCCCCAGGCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: TTIYSMWQGVFFDRRTDRHCPRS*DPQAPE
Trigger: CTCTGGAGCCTGGGGATCCCAAGAGCGAGGACAGTG...CCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAACCCGCTCCACGTGCTTaGAGGCCGACGCCTCTTCCG +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKPAPRA*RPTPLP
Trigger: CGGAAGAGGCGTCGGCCTTCAAGCACGTGGAGCGGG...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTGCGCGCGGTCCGGCTaGTCCTTGCCCTTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: LFCLLCSEMLNIKFTRNICARSG*SLPFLG
Trigger: GCCCAAGAAGGGCAAGGAGCAGCCGGACCGCGCGCA...GATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATGCGCGCGGTCCGGCTaGTCCTTGCCCTTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKCARSG*SLPFLG
Trigger: GCCCAAGAAGGGCAAGGAGCAGCCGGACCGCGCGCA...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACGACAGCTGCTGTGTGTaGATGGCGATCTCGCGGTCG +
Preference number: 4 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNDSCCV*MAISRS
Trigger: CGACCGCGAGATCGCCATGCACACACAGCAGCTGTC...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp TGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTTTTCAGGCCTGTCTTGGGCTTaGCTGCCGCGCTCCCGCCAC +
Preference number: 4 (lower is better)
Translates to: CLLCSEMLNIKFTRNIFSGLSWA*LPRSRH
Trigger: GTGGCGGGAGCGCGGCAGGCAAGCCCAAGACAGGCC...TGAAAAGATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CGGAAACAGGTGTGTGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAAGCGTGGAGTCGGATGTaGTTGTTGAGATTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: RKQVCGCHIYCFACYAVKAWSRM*LLRLLG
Trigger: CCCCAGCAATCTCAACAAGCACATCCGACTCCACGC...TTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCACACACCTGTTTCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CAACTTGACCAATTTATACATCCACTACCACGATATACTCAATGTGGCAAGGAGCGGCCAGCAGGCACTTaGGATGGTGGTGGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: QLDQFIHPLPRYTQCGKERPAGT*DGGGGG
Trigger: ACCACCACCACCACCATCCCAAGTGCCTGCTGGCCG...CTCCTTGCCACATTGAGTATATCGTGGTAGTGGATGTATAAATTGGTCAAGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp TTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCACAAGTGGCCTGTCTTaGGCTTGCCTGCCGCGCTCC +
Preference number: 4 (lower is better)
Translates to: LQIAQNGSKGKVLYPLYITSGLS*ACLPRS
Trigger: GGAGCGCGGCAGGCAAGCCCAAGACAGGCCACTTGT...GATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp TCTTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACACATCAGGCTCTGGCCTaGGTGGCGGGACTTGACGTG +
Preference number: 4 (lower is better)
Translates to: SYRLHKMEARAKYCIHCTHQALA*VAGLDV
Trigger: CACGTCAAGTCCCGCCACCCAGGCCAGAGCCTGATG...TGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp CTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCGGTACTTGCCCAGCTTaGAGGTGCCAGGCACCGGCC +
Preference number: 4 (lower is better)
Translates to: LFCLLCSEMLNIKFTRNIGTCPA*RCQAPA
Trigger: GGCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACC...GATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp ACCACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGTGGTTCCCTGCGATCTaGCAGGTACTTGCCCAGCTT +
Preference number: 4 (lower is better)
Translates to: TTIYSMWQGVFFDRRTDRWFPAI*QVLAQL
Trigger: AAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCA...CCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATTCCCCTTTCTCATCATaGGTTGGAGTCGCAGTTGTA +
Preference number: 4 (lower is better)
Translates to: PFVKLCSTRELERLTVPNSPFSS*VGVAVV
Trigger: TACAACTGCGACTCCAACGCATGATGAGAAAGGGGA...ATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp ACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAAGACAGCTGCTGTGTGTaGATGGCGATCTCGCGGTCG +
Preference number: 4 (lower is better)
Translates to: TIYSMWQGVFFDRRTDRKDSCCV*MAISRS
Trigger: CGACCGCGAGATCGCCATGCACACACAGCAGCTGTC...TTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp ACCACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGTGCGCACCTTTTTCTTaGGCCCTGGTTCCCTGCGAT +
Preference number: 4 (lower is better)
Translates to: TTIYSMWQGVFFDRRTDRCAPFS*ALVPCD
Trigger: ATCGCAGGGAACCAGGGCCCAAGAAAAAGGTGCGCA...CCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp TTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCTCCAGAGTCTGTTCCTaGGGATTCCTGGCTGCCCGG +
Preference number: 4 (lower is better)
Translates to: LQIAQNGSKGKVLYPLYISRVCS*GFLAAR
Trigger: CCGGGCAGCCAGGAATCCCCAGGAACAGACTCTGGA...GATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp ACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAAGGCACACTTTGCACTTaGGCGGCTTGTAGCCCGTGT +
Preference number: 4 (lower is better)
Translates to: TIYSMWQGVFFDRRTDRKGTLCT*AACSPC
Trigger: ACACGGGCTACAAGCCGCTCAAGTGCAAAGTGTGCC...TTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCGCAAGCCAGCCGGGATaGAGCAGTCAGCGTTCACGC +
Preference number: 4 (lower is better)
Translates to: LFCLLCSEMLNIKFTRNIASQPG*SSQRSR
Trigger: GCGTGAACGCTGACTGCTGCATCCCGGCTGGCTTGC...GATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp TTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCTGGGCCCTGGTTCCCTaGGATCTGACAGGTACTTGC +
Preference number: 4 (lower is better)
Translates to: LQIAQNGSKGKVLYPLYIWALVP*DLTGTC
Trigger: GCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCCA...GATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp AGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGCTGGACGTCTCGCAATaGCCGATAGAAGATCTGTCC +
Preference number: 4 (lower is better)
Translates to: RIATISMKPFLSPLHSLLLDVSQ*PIEDLS
Trigger: GGACAGATCTTCTATCGGGCATTGCGAGACGTCCAG...CAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp AATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCGTTCATTATAAAACAGCGACTCTTCCCGGCTaGCATCTCGGACAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: NGSKGKVLYPLYIVHYKTATLPG*HLGQLL
Trigger: CAGCAGCTGTCCGAGATGGCAGCCGGGAAGAGTCGC...TGTTTTATAATGAACGATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACGTTCCTGGGGATTCCTaGCTGCCCGGATTAACCCTA +
Preference number: 4 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNVPGDS*LPGLTL
Trigger: TAGGGTTAATCCGGGCAGCCAGGAATCCCCAGGAAC...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp TGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTTTTCAAGCCGAGCGCACGCCTaGGTAGAATGGCAGGCCTCC +
Preference number: 4 (lower is better)
Translates to: CLLCSEMLNIKFTRNIFSSRAHA*VEWQAS
Trigger: GGAGGCCTGCCATTCTACCCAGGCGTGCGCTCGGCT...TGAAAAGATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCCGGCCAGCAGGCACTTaGGATGGTGGTGGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: LFCLLCSEMLNIKFTRNIRPAGT*DGGGGG
Trigger: ACCACCACCACCACCATCCCAAGTGCCTGCTGGCCG...GATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp CTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTTGGCCATCAGGCTCTaGCCTGGGTGGCGGGACTTG +
Preference number: 4 (lower is better)
Translates to: LFCLLCSEMLNIKFTRNILAIRL*PGWRDL
Trigger: CAAGTCCCGCCACCCAGGCCAGAGCCTGATGGCCAA...GATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAAGCCTCGGGGTCGCTCTaGTCGTCAGTGAAGCAGACA +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKASGSL*SSVKQT
Trigger: TGTCTGCTTCACTGACGATCAGAGCGACCCCGAGGC...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp ACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAAGTATTGCCCTCGGCGTaGAGTCGGATGTGCTTGTTG +
Preference number: 4 (lower is better)
Translates to: TIYSMWQGVFFDRRTDRKVLPSA*SRMCLL
Trigger: CAACAAGCACATCCGACTCCACGCCGAGGGCAATAC...TTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAAGTCGGATGTGCTTGTTaGGATTGCTGGGGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKVGCAC*DCWGRR
Trigger: TCGGCGACCCCAGCAATCTCAACAAGCACATCCGAC...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp TTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCTGCGCGAGTACAGCTTaGCACAGTAGAGGCACAAGT +
Preference number: 4 (lower is better)
Translates to: LQIAQNGSKGKVLYPLYICASTA*HSRGTS
Trigger: ACTTGTGCCTCTACTGTGGCAAGCTGTACTCGCGCA...GATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp TGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTTTTCACCACTGAGGACGCAGTaGAACCGCAGGTGTGCCTTG +
Preference number: 4 (lower is better)
Translates to: CLLCSEMLNIKFTRNIFSPLRTQ*NRRCAL
Trigger: CAAGGCACACCTGCGGTTCCACTGCGTCCTCAGTGG...TGAAAAGATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATGGTTCCCTGCGATCTaGCAGGTACTTGCCCAGCTT +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKWFPAI*QVLAQL
Trigger: AAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCA...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp TGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTTTTCAGCTCCCCTCTCACCATaGGCACCTTTTTCTTGGGCC +
Preference number: 4 (lower is better)
Translates to: CLLCSEMLNIKFTRNIFSAPLSP*APFSWA
Trigger: GGCCCAAGAAAAAGGTGCGCATGGTGAGAGGGGAGC...TGAAAAGATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp CTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCGCGTGGAGTCGGATGTaGTTGTTGAGATTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: LFCLLCSEMLNIKFTRNIAWSRM*LLRLLG
Trigger: CCCCAGCAATCTCAACAAGCACATCCGACTCCACGC...GATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TCTTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACAGGGATGTCAAACCACTaGGCCAAGGAGTTAGAATAC +
Preference number: 4 (lower is better)
Translates to: SYRLHKMEARAKYCIHCTGMSNH*AKELEY
Trigger: GTATTCTAACTCCTTGGCTCAGTGGTTTGACATCCC...TGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CCA 90 bp TGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTTTTCAGTGTGCGTCCGCATGTaGATCTTGAGCCCGTACTTG +
Preference number: 4 (lower is better)
Translates to: CLLCSEMLNIKFTRNIFSVCVRM*ILSPYL
Trigger: CAAGTACGGGCTCAAGATCCACATGCGGACGCACAC...TGAAAAGATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR GCA 90 bp TGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTTTTCACTGGACGTCTCGCAATaGCCGATAGAAGATCTGTCC +
Preference number: 4 (lower is better)
Translates to: CLLCSEMLNIKFTRNIFSLDVSQ*PIEDLS
Trigger: GGACAGATCTTCTATCGGGCATTGCGAGACGTCCAG...TGAAAAGATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR TCA 90 bp TGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAATGCTTAACATAAAAGGGATGTCAAACCACTaGGCCAAGGAGTTAGAATAC +
Preference number: 4 (lower is better)
Translates to: WVSHLLFCLLCSEMLNIKGMSNH*AKELEY
Trigger: GTATTCTAACTCCTTGGCTCAGTGGTTTGACATCCC...TTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
3UTR CAA 72 bp GAAACAGGTGTGTGGGTGTCACATCTACTGTTTTGCTaGCTATGCAGTGAAATGCTTAACATAAAATTCACA +
Preference number: 4 (lower is better)
Translates to: ETGVWVSHLLFC*LCSEMLNIKFT
Trigger: TGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCACACACCTGTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 90 bp AGCCGCCCGGGCCAGGCCGGCCGGCTTGAAAGCCGAGCGCACGCCTaGGTAGAATGGCAGGCCTCCGCCGCCGCCCGAGGAGCCGCCCAC +
Preference number: 5 (lower is better)
Translates to: SRPGQAGRLESRAHA*VEWQASAAARGAAH
Trigger: GTGGGCGGCTCCTCGGGCGGCGGCGGAGGCCTGCCATTCTACCCAGGCGTGCGCTCGGCTTTCAAGCCGGCCGGCCTGGCCCGGGCGGCT
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 90 bp AGGCCTTCTGCCACCGGGGAAGCGCCGGGCCGGGCCGCGTGCTCCTaGGGCAGGAAAGCACGGCCCCCGCCGCCACTGAGGACGCAGTGG +
Preference number: 5 (lower is better)
Translates to: RPSATGEAPGRAACS*GRKARPPPPLRTQW
Trigger: CCACTGCGTCCTCAGTGGCGGCGGGGGCCGTGCTTTCCTGCCCCAGGAGCACGCGGCCCGGCCCGGCGCTTCCCCGGTGGCAGAAGGCCT
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 90 bp CGTCAAGTCCGGGACGGTGGGTTTCGGAGGGAGGCCGAGGCCTTCTaGCACCGGGGAAGCGCCGGGCCGGGCCGCGTGCTCCTGGGGCAG +
Preference number: 5 (lower is better)
Translates to: RQVRDGGFRREAEAF*HRGSAGPGRVLLGQ
Trigger: CTGCCCCAGGAGCACGCGGCCCGGCCCGGCGCTTCCCCGGTGGCAGAAGGCCTCGGCCTCCCTCCGAAACCCACCGTCCCGGACTTGACG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 90 bp GGCGGAGCCCGCTCCACGTGCTTGAAGGCCGACGCCTCTTCCGGGTaGCCGGCGAGCAGGGGGAAGGCTCTCAGGGCCCCGGGACACGGC +
Preference number: 5 (lower is better)
Translates to: GGARSTCLKADASSG*PASRGKALRAPGHG
Trigger: GCCGTGTCCCGGGGCCCTGAGAGCCTTCCCCCTGCTCGCCGGCCACCCGGAAGAGGCGTCGGCCTTCAAGCACGTGGAGCGGGCTCCGCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 90 bp CTCCGGGCCCGGGCCGTCGCCCGCCTTGGCCATCAGGCTCTGGCCTaGGTGGCGGGACTTGACGTGACGCTCCAGGTCTCGGCGGCGCAC +
Preference number: 5 (lower is better)
Translates to: LRARAVARLGHQALA*VAGLDVTLQVSAAH
Trigger: GTGCGCCGCCGAGACCTGGAGCGTCACGTCAAGTCCCGCCACCCAGGCCAGAGCCTGATGGCCAAGGCGGGCGACGGCCCGGGCCCGGAG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 90 bp GGCCAGGCCGGCCGGCTTGAAAGCCGAGCGCACGCCTGGGTAGAATaGCAGGCCTCCGCCGCCGCCCGAGGAGCCGCCCACTATCCCCAG +
Preference number: 5 (lower is better)
Translates to: GQAGRLESRAHAWVE*QASAAARGAAHYPQ
Trigger: CTGGGGATAGTGGGCGGCTCCTCGGGCGGCGGCGGAGGCCTGCCATTCTACCCAGGCGTGCGCTCGGCTTTCAAGCCGGCCGGCCTGGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 90 bp GCCTCCCGCTTGATGCTCTCCCGCGCCCCGCACGCCTGGGCGAGCTaGGCGGCCGGAGCTTGGGGTCGCAAAGCGATTGCCTGGACGGGC +
Preference number: 5 (lower is better)
Translates to: ASRLMLSRAPHAWAS*AAGAWGRKAIAWTG
Trigger: GCCCGTCCAGGCAATCGCTTTGCGACCCCAAGCTCCGGCCGCTCAGCTCGCCCAGGCGTGCGGGGCGCGGGAGAGCATCAAGCGGGAGGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 90 bp CGTCGCCCGCCTTGGCCATCAGGCTCTGGCCTGGGTGGCGGGACTTaGCGTGACGCTCCAGGTCTCGGCGGCGCACCAGCACCTTGCCGC +
Preference number: 5 (lower is better)
Translates to: RRPPWPSGSGLGGGT*RDAPGLGGAPAPCR
Trigger: GCGGCAAGGTGCTGGTGCGCCGCCGAGACCTGGAGCGTCACGTCAAGTCCCGCCACCCAGGCCAGAGCCTGATGGCCAAGGCGGGCGACG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 90 bp TCTCGGACAGCTGCTGTGTGTGCATGGCGATCTCGCGGTCGATGCTaGCCAGGGAGCCCAGTTCGGCCGGCCCGATCGCCGCCGCCGCCG +
Preference number: 5 (lower is better)
Translates to: SRTAAVCAWRSRGRC*PGSPVRPARSPPPP
Trigger: CGGCGGCGGCGGCGATCGGGCCGGCCGAACTGGGCTCCCTGGCCAGCATCGACCGCGAGATCGCCATGCACACACAGCAGCTGTCCGAGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 90 bp CCCGCCTTGGCCATCAGGCTCTGGCCTGGGTGGCGGGACTTGACGTaGCGCTCCAGGTCTCGGCGGCGCACCAGCACCTTGCCGCAGAAC +
Preference number: 5 (lower is better)
Translates to: PALAIRLWPGWRDLT*RSRSRRRTSTLPQN
Trigger: GTTCTGCGGCAAGGTGCTGGTGCGCCGCCGAGACCTGGAGCGTCACGTCAAGTCCCGCCACCCAGGCCAGAGCCTGATGGCCAAGGCGGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 90 bp TGGAGGCAGCGTCCCCGAGTCCAGGCGGGCGCGACTCTTCCCGGCTaGCATCTCGGACAGCTGCTGTGTGTGCATGGCGATCTCGCGGTC +
Preference number: 5 (lower is better)
Translates to: WRQRPRVQAGATLPG*HLGQLLCVHGDLAV
Trigger: GACCGCGAGATCGCCATGCACACACAGCAGCTGTCCGAGATGGCAGCCGGGAAGAGTCGCGCCCGCCTGGACTCGGGGACGCTGCCTCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 90 bp CGGGCGCGACTCTTCCCGGCTGCCATCTCGGACAGCTGCTGTGTGTaGATGGCGATCTCGCGGTCGATGCTGGCCAGGGAGCCCAGTTCG +
Preference number: 5 (lower is better)
Translates to: RARLFPAAISDSCCV*MAISRSMLAREPSS
Trigger: CGAACTGGGCTCCCTGGCCAGCATCGACCGCGAGATCGCCATGCACACACAGCAGCTGTCCGAGATGGCAGCCGGGAAGAGTCGCGCCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 90 bp GAGTCCAGGCGGGCGCGACTCTTCCCGGCTGCCATCTCGGACAGCTaGTGTGTGTGCATGGCGATCTCGCGGTCGATGCTGGCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: ESRRARLFPAAISDS*CVCMAISRSMLARE
Trigger: CTCCCTGGCCAGCATCGACCGCGAGATCGCCATGCACACACAGCAGCTGTCCGAGATGGCAGCCGGGAAGAGTCGCGCCCGCCTGGACTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 90 bp AGCGTTCACGCTGGTGGCCGAAGTGCGAGAAGTTCCGTGCATTGTTaGCACCGCCGCCAGGCAGACGCTGGGGCTCGCGGGGTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: SVHAGGRSARSSVHC*HRRQADAGARGVLH
Trigger: GTGGAGGACCCCGCGAGCCCCAGCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS GCA 90 bp CAGCAGTCAGCGTTCACGCTGGTGGCCGAAGTGCGAGAAGTTCCGTaGATTGTTGCCACCGCCGCCAGGCAGACGCTGGGGCTCGCGGGG +
Preference number: 5 (lower is better)
Translates to: QQSAFTLVAEVREVP*IVATAARQTLGLAG
Trigger: CCCCGCGAGCCCCAGCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCTGACTGCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS CCA 90 bp CGCGACTCTTCCCGGCTGCCATCTCGGACAGCTGCTGTGTGTGCATaGCGATCTCGCGGTCGATGCTGGCCAGGGAGCCCAGTTCGGCCG +
Preference number: 5 (lower is better)
Translates to: RDSSRLPSRTAAVCA*RSRGRCWPGSPVRP
Trigger: CGGCCGAACTGGGCTCCCTGGCCAGCATCGACCGCGAGATCGCCATGCACACACAGCAGCTGTCCGAGATGGCAGCCGGGAAGAGTCGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 90 bp TGCGAGAAGTTCCGTGCATTGTTGCCACCGCCGCCAGGCAGACGCTaGGGCTCGCGGGGTCCTCCACGGGGCGCAAGTGACAGAACCAGG +
Preference number: 5 (lower is better)
Translates to: CEKFRALLPPPPGRR*GSRGPPRGASDRTR
Trigger: CCTGGTTCTGTCACTTGCGCCCCGTGGAGGACCCCGCGAGCCCCAGCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS TCA 90 bp TCTTGGGCCCTGGTTCCCTGCGATCTGACAGGTACTTGCCCAGCTTaGAGGTGCCAGGCACCGGCCCAAGGCGCAAGCCAGCCGGGATGC +
Preference number: 5 (lower is better)
Translates to: SWALVPCDLTGTCPA*RCQAPAQGASQPGC
Trigger: GCATCCCGGCTGGCTTGCGCCTTGGGCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCCAAGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 90 bp AGCCAGCCGGGATGCAGCAGTCAGCGTTCACGCTGGTGGCCGAAGTaGGAGAAGTTCCGTGCATTGTTGCCACCGCCGCCAGGCAGACGC +
Preference number: 5 (lower is better)
Translates to: SQPGCSSQRSRWWPK*EKFRALLPPPPGRR
Trigger: GCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCTGACTGCTGCATCCCGGCTGGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS CCA 90 bp GCCCAAGGCGCAAGCCAGCCGGGATGCAGCAGTCAGCGTTCACGCTaGTGGCCGAAGTGCGAGAAGTTCCGTGCATTGTTGCCACCGCCG +
Preference number: 5 (lower is better)
Translates to: AQGASQPGCSSQRSR*WPKCEKFRALLPPP
Trigger: CGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCTGACTGCTGCATCCCGGCTGGCTTGCGCCTTGGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS GCA 90 bp AGCACGGCCCCCGCCGCCACTGAGGACGCAGTGGAACCGCAGGTGTaGCTTGAGGCTGTTAGGGTAGCGAAAGGTCCTCCAGCAGTACCA +
Preference number: 5 (lower is better)
Translates to: STAPAATEDAVEPQV*LEAVRVAKGPPAVP
Trigger: TGGTACTGCTGGAGGACCTTTCGCTACCCTAACAGCCTCAAGGCACACCTGCGGTTCCACTGCGTCCTCAGTGGCGGCGGGGGCCGTGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 90 bp CAAGGCGCAAGCCAGCCGGGATGCAGCAGTCAGCGTTCACGCTGGTaGCCGAAGTGCGAGAAGTTCCGTGCATTGTTGCCACCGCCGCCA +
Preference number: 5 (lower is better)
Translates to: QGASQPGCSSQRSRW*PKCEKFRALLPPPP
Trigger: TGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCTGACTGCTGCATCCCGGCTGGCTTGCGCCTTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp TCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCCCTGGAAGGCGCGCCCGCTCCACGTGCTaGAAGGCCGACGCCTCTTCC +
Preference number: 5 (lower is better)
Translates to: SPLHSLLCPRPCSVPGRRARSTC*KADASS
Trigger: GGAAGAGGCGTCGGCCTTCAAGCACGTGGAGCGGGC...GCGCCTTCCAGGGACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 90 bp AGCGGTAGGGCGTATTGCCCTCGGCGTGGAGTCGGATGTGCTTGTTaGGATTGCTGGGGTCGCCGAAGGGCCGCAGGCACACTTTGCACT +
Preference number: 5 (lower is better)
Translates to: SGRAYCPRRGVGCAC*DCWGRRRAAGTLCT
Trigger: AGTGCAAAGTGTGCCTGCGGCCCTTCGGCGACCCCAGCAATCTCAACAAGCACATCCGACTCCACGCCGAGGGCAATACGCCCTACCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp TCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCCCTGGAAGGCGCGTCCGCATGTGGATCTaGAGCCCGTACTTGCGCGAG +
Preference number: 5 (lower is better)
Translates to: SPLHSLLCPRPCSVPGRRVRMWI*SPYLRE
Trigger: CTCGCGCAAGTACGGGCTCAAGATCCACATGCGGAC...GCGCCTTCCAGGGACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 90 bp TCTCACCATGCGCACCTTTTTCTTGGGCCCTGGTTCCCTGCGATCTaGCAGGTACTTGCCCAGCTTGAAGGTGCCAGGCACCGGCCCAAG +
Preference number: 5 (lower is better)
Translates to: SHHAHLFLGPWFPAI*QVLAQLEGARHRPK
Trigger: CTTGGGCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCCAAGAAAAAGGTGCGCATGGTGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp CAACCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTCGGTCCGGCTGCTCCTaGCCCTTCTTGGGCGTTCCC +
Preference number: 5 (lower is better)
Translates to: QPFVKLCSTRELERLTVPRSGCS*PFLGVP
Trigger: GGGAACGCCCAAGAAGGGCAAGGAGCAGCCGGACCG...AGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGGTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp TCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCCCTGGAAGGCGCTGGAGTCGGATGTGCTaGTTGAGATTGCTGGGGTCG +
Preference number: 5 (lower is better)
Translates to: SPLHSLLCPRPCSVPGRRWSRMC*LRLLGS
Trigger: CGACCCCAGCAATCTCAACAAGCACATCCGACTCCA...GCGCCTTCCAGGGACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp TTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATCCGCGGTCCGGCTGCTCCTaGCCCTTCTTGGGCGTTCCC +
Preference number: 5 (lower is better)
Translates to: FVKLCSTRELERLTVPNPRSGCS*PFLGVP
Trigger: GGGAACGCCCAAGAAGGGCAAGGAGCAGCCGGACCG...CGGATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp AGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGGCCAGGCCGGCCGGCTaGAAAGCCGAGCGCACGCCT +
Preference number: 5 (lower is better)
Translates to: RIATISMKPFLSPLHSLLARPAG*KAERTP
Trigger: AGGCGTGCGCTCGGCTTTCAAGCCGGCCGGCCTGGC...CAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp AAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCATGTGCTTGTTGAGATaGCTGGGGTCGCCGAAGGGC +
Preference number: 5 (lower is better)
Translates to: KPFLSPLHSLLCPRPCSVMCLLR*LGSPKG
Trigger: GCCCTTCGGCGACCCCAGCAATCTCAACAAGCACAT...GACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp TTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATCCGAGGTACTTGCCCAGCTaGAAGGTGCCAGGCACCGGC +
Preference number: 5 (lower is better)
Translates to: FVKLCSTRELERLTVPNPRYLPS*KVPGTG
Trigger: GCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACCT...CGGATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp AAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTGTCCTCGTCCCTGCTCAGTCCGATCTGACAGGTACTaGCCCAGCTTGAAGGTGCCA +
Preference number: 5 (lower is better)
Translates to: KPFLSPLHSLLCPRPCSVRSDRY*PSLKVP
Trigger: TGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCG...GACTGAGCAGGGACGAGGACACAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACGCCAGGCCGGCCGGCTaGAAAGCCGAGCGCACGCCT +
Preference number: 5 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNARPAG*KAERTP
Trigger: AGGCGTGCGCTCGGCTTTCAAGCCGGCCGGCCTGGC...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp ACCACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGCGGCGCACCAGCACCTaGCCGCAGAACTCGCAGCGG +
Preference number: 5 (lower is better)
Translates to: TTIYSMWQGVFFDRRTDRRRTST*PQNSQR
Trigger: CCGCTGCGAGTTCTGCGGCAAGGTGCTGGTGCGCCG...CCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACGGGCCGTCGCCCGCCTaGGCCATCAGGCTCTGGCCT +
Preference number: 5 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNGPSPA*AIRLWP
Trigger: AGGCCAGAGCCTGATGGCCAAGGCGGGCGACGGCCC...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 90 bp ATCTGTCCTCCTGGTAAGTCTGCAATAGCTTCCAGAGTCTGTTCCTaGGGATTCCTGGCTGCCCGGATTAACCCTATCCACTCCAGAGGG +
Preference number: 5 (lower is better)
Translates to: ICPPGKSAIASRVCS*GFLAARINPIHSRG
Trigger: CCCTCTGGAGTGGATAGGGTTAATCCGGGCAGCCAGGAATCCCCAGGAACAGACTCTGGAAGCTATTGCAGACTTACCAGGAGGACAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp ACCACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGGCCCGCTCCACGTGCTaGAAGGCCGACGCCTCTTCC +
Preference number: 5 (lower is better)
Translates to: TTIYSMWQGVFFDRRTDRARSTC*KADASS
Trigger: GGAAGAGGCGTCGGCCTTCAAGCACGTGGAGCGGGC...CCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp CAACCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTATGTGCTTGTTGAGATaGCTGGGGTCGCCGAAGGGC +
Preference number: 5 (lower is better)
Translates to: QPFVKLCSTRELERLTVPMCLLR*LGSPKG
Trigger: GCCCTTCGGCGACCCCAGCAATCTCAACAAGCACAT...AGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp ACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAAGGGCCGTCGCCCGCCTaGGCCATCAGGCTCTGGCCT +
Preference number: 5 (lower is better)
Translates to: TIYSMWQGVFFDRRTDRKGPSPA*AIRLWP
Trigger: AGGCCAGAGCCTGATGGCCAAGGCGGGCGACGGCCC...TTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp ATCCCCAGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCACTATCCCCAGGAATaGACTGTGCGCGCGGTCCGG +
Preference number: 5 (lower is better)
Translates to: IPRIATISMKPFLSPLHSHYPQE*TVRAVR
Trigger: CCGGACCGCGCGCACAGTCAATTCCTGGGGATAGTG...AGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp CCCTTCGTTAAACTTTGCTCCACTCGAGAACTGGAGCGGCTCACTGTTCCTAATAGTCGGATGTGCTTGTaGAGATTGCTGGGGTCGCCG +
Preference number: 5 (lower is better)
Translates to: PFVKLCSTRELERLTVPNSRMCL*RLLGSP
Trigger: CGGCGACCCCAGCAATCTCAACAAGCACATCCGACT...ATTAGGAACAGTGAGCCGCTCCAGTTCTCGAGTGGAGCAAAGTTTAACGAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 90 bp TTCTCATCATGCGTTGGAGTCGCAGTTGTAGGGATGTCAAACCACTaGGCCAAGGAGTTAGAATACCACACAGTCAGCTCTTCCCCAGGC +
Preference number: 5 (lower is better)
Translates to: FSSCVGVAVVGMSNH*AKELEYHTVSSSPG
Trigger: GCCTGGGGAAGAGCTGACTGTGTGGTATTCTAACTCCTTGGCTCAGTGGTTTGACATCCCTACAACTGCGACTCCAACGCATGATGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACTGCTCCTTGCCCTTCTaGGGCGTTCCCCACTTGCCC +
Preference number: 5 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNCSLPF*GVPHLP
Trigger: GGGCAAGTGGGGAACGCCCAAGAAGGGCAAGGAGCA...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp ACCACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGATGGACTCGGGGTATTaGAGCAGCCCGCCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: TTIYSMWQGVFFDRRTDRMDSGY*SSPPKC
Trigger: GCACTTGGGCGGGCTGCTCAAATACCCCGAGTCCAT...CCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp ATCCCCAGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTAGTCGGATGTGCTTGTaGAGATTGCTGGGGTCGCCG +
Preference number: 5 (lower is better)
Translates to: IPRIATISMKPFLSPLHSSRMCL*RLLGSP
Trigger: CGGCGACCCCAGCAATCTCAACAAGCACATCCGACT...AGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCTGGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp AGAATTGCGACAATATCAATGAAGCCCTTCTTGTCCCCACTTCACTCTCTACTGTCACTGTCCTCGCTCTaGGGATCCCCAGGCTCCAGA +
Preference number: 5 (lower is better)
Translates to: RIATISMKPFLSPLHSLLSLSSL*GSPGSR
Trigger: TCTGGAGCCTGGGGATCCCAAGAGCGAGGACAGTGA...CAGTAGAGAGTGAAGTGGGGACAAGAAGGGCTTCATTGATATTGTCGCAATTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp CAACTTGACCAATTTATACATCCACTACCACGATATACTCAATGTGGCAAGGAGAGGTACTTGCCCAGCTaGAAGGTGCCAGGCACCGGC +
Preference number: 5 (lower is better)
Translates to: QLDQFIHPLPRYTQCGKERYLPS*KVPGTG
Trigger: GCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACCT...CTCCTTGCCACATTGAGTATATCGTGGTAGTGGATGTATAAATTGGTCAAGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp CGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGAAACATGGACTCGGGGTATTaGAGCAGCCCGCCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: RYTQCGKECSLTGEQIGNMDSGY*SSPPKC
Trigger: GCACTTGGGCGGGCTGCTCAAATACCCCGAGTCCAT...GTTTCCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp CGGAAACAGGTGTGTGGGTGTCACATCTACTGTTTTGCTTGCTATGCAGTGAAAATCTTGAGCCCGTACTaGCGCGAGTACAGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: RKQVCGCHIYCFACYAVKILSPY*REYSLP
Trigger: TGGCAAGCTGTACTCGCGCAAGTACGGGCTCAAGAT...TTTCACTGCATAGCAAGCAAAACAGTAGATGTGACACCCACACACCTGTTTCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp TGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTTTTCACGGCGCACCAGCACCTaGCCGCAGAACTCGCAGCGG +
Preference number: 5 (lower is better)
Translates to: CLLCSEMLNIKFTRNIFSRRTST*PQNSQR
Trigger: CCGCTGCGAGTTCTGCGGCAAGGTGCTGGTGCGCCG...TGAAAAGATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp ACCACGATATACTCAATGTGGCAAGGAGTGTTCTTTGACAGGAGAACAGATAGGTGGAGTCGGATGTGCTaGTTGAGATTGCTGGGGTCG +
Preference number: 5 (lower is better)
Translates to: TTIYSMWQGVFFDRRTDRWSRMC*LRLLGS
Trigger: CGACCCCAGCAATCTCAACAAGCACATCCGACTCCA...CCTATCTGTTCTCCTGTCAAAGAACACTCCTTGCCACATTGAGTATATCGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp TTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCTCACTGTCCTCGCTCTaGGGATCCCCAGGCTCCAGA +
Preference number: 5 (lower is better)
Translates to: LQIAQNGSKGKVLYPLYISLSSL*GSPGSR
Trigger: TCTGGAGCCTGGGGATCCCAAGAGCGAGGACAGTGA...GATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp TTACAGATTGCACAAAATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCAAGTTCCGTGCATTGTaGCCACCGCCGCCAGGCAGA +
Preference number: 5 (lower is better)
Translates to: LQIAQNGSKGKVLYPLYIKFRAL*PPPPGR
Trigger: TCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTT...GATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATTTTGTGCAATCTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp AATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCGTTCATTATAAAACACACTATCCCCAGGAATaGACTGTGCGCGCGGTCCGG +
Preference number: 5 (lower is better)
Translates to: NGSKGKVLYPLYIVHYKTHYPQE*TVRAVR
Trigger: CCGGACCGCGCGCACAGTCAATTCCTGGGGATAGTG...TGTTTTATAATGAACGATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp CAACTTGACCAATTTATACATCCACTACCACGATATACTCAATGTGGCAAGGAGCGATCTGACAGGTACTaGCCCAGCTTGAAGGTGCCA +
Preference number: 5 (lower is better)
Translates to: QLDQFIHPLPRYTQCGKERSDRY*PSLKVP
Trigger: TGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCG...CTCCTTGCCACATTGAGTATATCGTGGTAGTGGATGTATAAATTGGTCAAGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp TGCTTGCTATGCAGTGAAATGCTTAACATAAAATTCACACGGAACATCTTTTCAGTCCGCATGTGGATCTaGAGCCCGTACTTGCGCGAG +
Preference number: 5 (lower is better)
Translates to: CLLCSEMLNIKFTRNIFSVRMWI*SPYLRE
Trigger: CTCGCGCAAGTACGGGCTCAAGATCCACATGCGGAC...TGAAAAGATGTTCCGTGTGAATTTTATGTTAAGCATTTCACTGCATAGCAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS-3UTR CAA 90 bp AATGGAAGCAAGGGCAAAGTACTGTATCCACTGTACATCGTTCATTATAAAACAATCTTGAGCCCGTACTaGCGCGAGTACAGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: NGSKGKVLYPLYIVHYKTILSPY*REYSLP
Trigger: TGGCAAGCTGTACTCGCGCAAGTACGGGCTCAAGAT...TGTTTTATAATGAACGATGTACAGTGGATACAGTACTTTGCCCTTGCTTCCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 72 bp CGGGACGGTGGGTTTCGGAGGGAGGCCGAGGCCTTCTaGCACCGGGGAAGCGCCGGGCCGGGCCGCGTGCTC +
Preference number: 6 (lower is better)
Translates to: RDGGFRREAEAF*HRGSAGPGRVL
Trigger: GAGCACGCGGCCCGGCCCGGCGCTTCCCCGGTGGCAGAAGGCCTCGGCCTCCCTCCGAAACCCACCGTCCCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 72 bp GGGAGGTGGCCAGGGGCGCCAGGGAAGCCTCCCGCTTaGTGCTCTCCCGCGCCCCGCACGCCTGGGCGAGCT +
Preference number: 6 (lower is better)
Translates to: GRWPGAPGKPPA*CSPAPRTPGRA
Trigger: AGCTCGCCCAGGCGTGCGGGGCGCGGGAGAGCATCAAGCGGGAGGCTTCCCTGGCGCCCCTGGCCACCTCCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 72 bp GGCCAGGCCGGCCGGCTTGAAAGCCGAGCGCACGCCTaGGTAGAATGGCAGGCCTCCGCCGCCGCCCGAGGA +
Preference number: 6 (lower is better)
Translates to: GQAGRLESRAHA*VEWQASAAARG
Trigger: TCCTCGGGCGGCGGCGGAGGCCTGCCATTCTACCCAGGCGTGCGCTCGGCTTTCAAGCCGGCCGGCCTGGCC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 72 bp CGCTCCACGTGCTTGAAGGCCGACGCCTCTTCCGGGTaGCCGGCGAGCAGGGGGAAGGCTCTCAGGGCCCCG +
Preference number: 6 (lower is better)
Translates to: RSTCLKADASSG*PASRGKALRAP
Trigger: CGGGGCCCTGAGAGCCTTCCCCCTGCTCGCCGGCCACCCGGAAGAGGCGTCGGCCTTCAAGCACGTGGAGCG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 72 bp CGGGCCGTCGCCCGCCTTGGCCATCAGGCTCTGGCCTaGGTGGCGGGACTTGACGTGACGCTCCAGGTCTCG +
Preference number: 6 (lower is better)
Translates to: RAVARLGHQALA*VAGLDVTLQVS
Trigger: CGAGACCTGGAGCGTCACGTCAAGTCCCGCCACCCAGGCCAGAGCCTGATGGCCAAGGCGGGCGACGGCCCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 72 bp TTGATGCTCTCCCGCGCCCCGCACGCCTGGGCGAGCTaGGCGGCCGGAGCTTGGGGTCGCAAAGCGATTGCC +
Preference number: 6 (lower is better)
Translates to: LMLSRAPHAWAS*AAGAWGRKAIA
Trigger: GGCAATCGCTTTGCGACCCCAAGCTCCGGCCGCTCAGCTCGCCCAGGCGTGCGGGGCGCGGGAGAGCATCAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 72 bp GCTGCTGTGTGTGCATGGCGATCTCGCGGTCGATGCTaGCCAGGGAGCCCAGTTCGGCCGGCCCGATCGCCG +
Preference number: 6 (lower is better)
Translates to: AAVCAWRSRGRC*PGSPVRPARSP
Trigger: CGGCGATCGGGCCGGCCGAACTGGGCTCCCTGGCCAGCATCGACCGCGAGATCGCCATGCACACACAGCAGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 72 bp TTCCGTGCATTGTTGCCACCGCCGCCAGGCAGACGCTaGGGCTCGCGGGGTCCTCCACGGGGCGCAAGTGAC +
Preference number: 6 (lower is better)
Translates to: FRALLPPPPGRR*GSRGPPRGASD
Trigger: GTCACTTGCGCCCCGTGGAGGACCCCGCGAGCCCCAGCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS CAA 72 bp GCCGCCGCCCGAGGAGCCGCCCACTATCCCCAGGAATaGACTGTGCGCGCGGTCCGGCTGCTCCTTGCCCTT +
Preference number: 6 (lower is better)
Translates to: AAARGAAHYPQE*TVRAVRLLLAL
Trigger: AAGGGCAAGGAGCAGCCGGACCGCGCGCACAGTCAATTCCTGGGGATAGTGGGCGGCTCCTCGGGCGGCGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 72 bp GCCATCAGGCTCTGGCCTGGGTGGCGGGACTTGACGTaGCGCTCCAGGTCTCGGCGGCGCACCAGCACCTTG +
Preference number: 6 (lower is better)
Translates to: AIRLWPGWRDLT*RSRSRRRTSTL
Trigger: CAAGGTGCTGGTGCGCCGCCGAGACCTGGAGCGTCACGTCAAGTCCCGCCACCCAGGCCAGAGCCTGATGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 72 bp CCTTGGCCATCAGGCTCTGGCCTGGGTGGCGGGACTTaGCGTGACGCTCCAGGTCTCGGCGGCGCACCAGCA +
Preference number: 6 (lower is better)
Translates to: PWPSGSGLGGGT*RDAPGLGGAPA
Trigger: TGCTGGTGCGCCGCCGAGACCTGGAGCGTCACGTCAAGTCCCGCCACCCAGGCCAGAGCCTGATGGCCAAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 72 bp GCTGGTGGCCGAAGTGCGAGAAGTTCCGTGCATTGTTaGCACCGCCGCCAGGCAGACGCTGGGGCTCGCGGG +
Preference number: 6 (lower is better)
Translates to: AGGRSARSSVHC*HRRQADAGARG
Trigger: CCCGCGAGCCCCAGCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS CAA 90 bp CAGCGTTCACGCTGGTGGCCGAAGTGCGAGAAGTTCCGTGCATTGTaGCCACCGCCGCCAGGCAGACGCTGGGGCTCGCGGGGTCCTCCA +
Preference number: 6 (lower is better)
Translates to: QRSRWWPKCEKFRAL*PPPPGRRWGSRGPP
Trigger: TGGAGGACCCCGCGAGCCCCAGCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS GCA 72 bp CGTCCCCGAGTCCAGGCGGGCGCGACTCTTCCCGGCTaGCATCTCGGACAGCTGCTGTGTGTGCATGGCGAT +
Preference number: 6 (lower is better)
Translates to: RPRVQAGATLPG*HLGQLLCVHGD
Trigger: ATCGCCATGCACACACAGCAGCTGTCCGAGATGGCAGCCGGGAAGAGTCGCGCCCGCCTGGACTCGGGGACG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 72 bp CGTGACGCTCCAGGTCTCGGCGGCGCACCAGCACCTTaGCGCAGAACTCGCAGCGGTAGGGCGTATTGCCCT +
Preference number: 6 (lower is better)
Translates to: RDAPGLGGAPAP*RRTRSGRAYCP
Trigger: AGGGCAATACGCCCTACCGCTGCGAGTTCTGCGGCAAGGTGCTGGTGCGCCGCCGAGACCTGGAGCGTCACG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CAA 90 bp AGTCAGCGTTCACGCTGGTGGCCGAAGTGCGAGAAGTTCCGTGCATaGTTGCCACCGCCGCCAGGCAGACGCTGGGGCTCGCGGGGTCCT +
Preference number: 6 (lower is better)
Translates to: SQRSRWWPKCEKFRA*LPPPPGRRWGSRGP
Trigger: AGGACCCCGCGAGCCCCAGCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCTGACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS GCA 72 bp CGGGCGCGACTCTTCCCGGCTGCCATCTCGGACAGCTaGTGTGTGTGCATGGCGATCTCGCGGTCGATGCTG +
Preference number: 6 (lower is better)
Translates to: RARLFPAAISDS*CVCMAISRSML
Trigger: CAGCATCGACCGCGAGATCGCCATGCACACACAGCAGCTGTCCGAGATGGCAGCCGGGAAGAGTCGCGCCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 72 bp GCGTTCACGCTGGTGGCCGAAGTGCGAGAAGTTCCGTaGATTGTTGCCACCGCCGCCAGGCAGACGCTGGGG +
Preference number: 6 (lower is better)
Translates to: AFTLVAEVREVP*IVATAARQTLG
Trigger: CCCCAGCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS CCA 72 bp TCCCGGCTGCCATCTCGGACAGCTGCTGTGTGTGCATaGCGATCTCGCGGTCGATGCTGGCCAGGGAGCCCA +
Preference number: 6 (lower is better)
Translates to: SRLPSRTAAVCA*RSRGRCWPGSP
Trigger: TGGGCTCCCTGGCCAGCATCGACCGCGAGATCGCCATGCACACACAGCAGCTGTCCGAGATGGCAGCCGGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CAA 72 bp TCACGCTGGTGGCCGAAGTGCGAGAAGTTCCGTGCATaGTTGCCACCGCCGCCAGGCAGACGCTGGGGCTCG +
Preference number: 6 (lower is better)
Translates to: SRWWPKCEKFRA*LPPPPGRRWGS
Trigger: CGAGCCCCAGCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS GCA 72 bp CTCTTCCCGGCTGCCATCTCGGACAGCTGCTGTGTGTaGATGGCGATCTCGCGGTCGATGCTGGCCAGGGAG +
Preference number: 6 (lower is better)
Translates to: LFPAAISDSCCV*MAISRSMLARE
Trigger: CTCCCTGGCCAGCATCGACCGCGAGATCGCCATGCACACACAGCAGCTGTCCGAGATGGCAGCCGGGAAGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CAA 90 bp TTCTTGGGCCCTGGTTCCCTGCGATCTGACAGGTACTTGCCCAGCTaGAAGGTGCCAGGCACCGGCCCAAGGCGCAAGCCAGCCGGGATG +
Preference number: 6 (lower is better)
Translates to: FLGPGSLRSDRYLPS*KVPGTGPRRKPAGM
Trigger: CATCCCGGCTGGCTTGCGCCTTGGGCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCCAAGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 72 bp CTGGTTCCCTGCGATCTGACAGGTACTTGCCCAGCTTaGAGGTGCCAGGCACCGGCCCAAGGCGCAAGCCAG +
Preference number: 6 (lower is better)
Translates to: LVPCDLTGTCPA*RCQAPAQGASQ
Trigger: CTGGCTTGCGCCTTGGGCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 72 bp GCGTATTGCCCTCGGCGTGGAGTCGGATGTGCTTGTTaGGATTGCTGGGGTCGCCGAAGGGCCGCAGGCACA +
Preference number: 6 (lower is better)
Translates to: AYCPRRGVGCAC*DCWGRRRAAGT
Trigger: TGTGCCTGCGGCCCTTCGGCGACCCCAGCAATCTCAACAAGCACATCCGACTCCACGCCGAGGGCAATACGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 72 bp CCCGCCGCCACTGAGGACGCAGTGGAACCGCAGGTGTaGCTTGAGGCTGTTAGGGTAGCGAAAGGTCCTCCA +
Preference number: 6 (lower is better)
Translates to: PAATEDAVEPQV*LEAVRVAKGPP
Trigger: TGGAGGACCTTTCGCTACCCTAACAGCCTCAAGGCACACCTGCGGTTCCACTGCGTCCTCAGTGGCGGCGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CAA 72 bp CCTGGTTCCCTGCGATCTGACAGGTACTTGCCCAGCTaGAAGGTGCCAGGCACCGGCCCAAGGCGCAAGCCA +
Preference number: 6 (lower is better)
Translates to: PGSLRSDRYLPS*KVPGTGPRRKP
Trigger: TGGCTTGCGCCTTGGGCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CAA 90 bp CGCACCTTTTTCTTGGGCCCTGGTTCCCTGCGATCTGACAGGTACTaGCCCAGCTTGAAGGTGCCAGGCACCGGCCCAAGGCGCAAGCCA +
Preference number: 6 (lower is better)
Translates to: RTFFLGPGSLRSDRY*PSLKVPGTGPRRKP
Trigger: TGGCTTGCGCCTTGGGCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCCAAGAAAAAGGTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS GCA 72 bp GGATGCAGCAGTCAGCGTTCACGCTGGTGGCCGAAGTaGGAGAAGTTCCGTGCATTGTTGCCACCGCCGCCA +
Preference number: 6 (lower is better)
Translates to: GCSSQRSRWWPK*EKFRALLPPPP
Trigger: TGGCGGCGGTGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCTGACTGCTGCATCC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS CAA 72 bp TTCTTGGGCCCTGGTTCCCTGCGATCTGACAGGTACTaGCCCAGCTTGAAGGTGCCAGGCACCGGCCCAAGG +
Preference number: 6 (lower is better)
Translates to: FLGPGSLRSDRY*PSLKVPGTGPR
Trigger: CCTTGGGCCGGTGCCTGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCCAAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CAA 72 bp TTGCCCTCGGCGTGGAGTCGGATGTGCTTGTTGAGATaGCTGGGGTCGCCGAAGGGCCGCAGGCACACTTTG +
Preference number: 6 (lower is better)
Translates to: LPSAWSRMCLLR*LGSPKGRRHTL
Trigger: CAAAGTGTGCCTGCGGCCCTTCGGCGACCCCAGCAATCTCAACAAGCACATCCGACTCCACGCCGAGGGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 72 bp AGCCAGCCGGGATGCAGCAGTCAGCGTTCACGCTGGTaGCCGAAGTGCGAGAAGTTCCGTGCATTGTTGCCA +
Preference number: 6 (lower is better)
Translates to: SQPGCSSQRSRW*PKCEKFRALLP
Trigger: TGGCAACAATGCACGGAACTTCTCGCACTTCGGCCACCAGCGTGAACGCTGACTGCTGCATCCCGGCTGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095141.4
CDS TCA 72 bp GCGCACCTTTTTCTTGGGCCCTGGTTCCCTGCGATCTaGCAGGTACTTGCCCAGCTTGAAGGTGCCAGGCAC +
Preference number: 6 (lower is better)
Translates to: AHLFLGPWFPAI*QVLAQLEGARH
Trigger: GTGCCTGGCACCTTCAAGCTGGGCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCCAAGAAAAAGGTGCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 72 bp CCTGGTAAGTCTGCAATAGCTTCCAGAGTCTGTTCCTaGGGATTCCTGGCTGCCCGGATTAACCCTATCCAC +
Preference number: 6 (lower is better)
Translates to: PGKSAIASRVCS*GFLAARINPIH
Trigger: GTGGATAGGGTTAATCCGGGCAGCCAGGAATCCCCAGGAACAGACTCTGGAAGCTATTGCAGACTTACCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS CCA 72 bp GCAGATGTAGCGCTCCTCCCCTTTCTCATCATGCGTTaGAGTCGCAGTTGTAGGGATGTCAAACCACTGAGC +
Preference number: 6 (lower is better)
Translates to: ADVALLPFLIMR*SRSCRDVKPLS
Trigger: GCTCAGTGGTTTGACATCCCTACAACTGCGACTCCAACGCATGATGAGAAAGGGGAGGAGCGCTACATCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4
CDS TCA 72 bp TGCGTTGGAGTCGCAGTTGTAGGGATGTCAAACCACTaGGCCAAGGAGTTAGAATACCACACAGTCAGCTCT +
Preference number: 6 (lower is better)
Translates to: CVGVAVVGMSNH*AKELEYHTVSS
Trigger: AGAGCTGACTGTGTGGTATTCTAACTCCTTGGCTCAGTGGTTTGACATCCCTACAACTGCGACTCCAACGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076206.11
ENSMUST00000095141.4