RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRDM10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042496

Ensembl transcript IDs: ENSMUST00000074510.4, ENSMUST00000117389.8, ENSMUST00000215499.2, ENSMUST00000215847.2

Found 374 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGATCATGCGTCCTTTTGTCTTCCAGGGAGTCTGCTTGTGGACCGTaGGGCCAGATCGGCCTGGGGACAGCATTTGTAGGGAGGACTGCT +
Preference number: 1 (lower is better)
Translates to: RSCVLLSSRESACGP*GQIGLGTAFVGRTA
Trigger: AGCAGTCCTCCCTACAAATGCTGTCCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTGGAAGACAAAAGGACGCATGATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 90 bp CCTGTTCAGATCATGCGTCCTTTTGTCTTCCAGGGAGTCTGCTTGTaGACCGTGAGGCCAGATCGGCCTGGGGACAGCATTTGTAGGGAG +
Preference number: 1 (lower is better)
Translates to: PVQIMRPFVFQGVCL*TVRPDRPGDSICRE
Trigger: CTCCCTACAAATGCTGTCCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTGGAAGACAAAAGGACGCATGATCTGAACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 90 bp ACTAAAATACGCCCAATGCTGGGAACCAGAGTGCGAGGTGGGGGCTaGAGTTGTAGCTCAGTGGTGGGAAACCTGCCTAGCATGCAAGAG +
Preference number: 1 (lower is better)
Translates to: TKIRPMLGTRVRGGG*SCSSVVGNLPSMQE
Trigger: CTCTTGCATGCTAGGCAGGTTTCCCACCACTGAGCTACAACTCCAGCCCCCACCTCGCACTCTGGTTCCCAGCATTGGGCGTATTTTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR GCA 90 bp GAAAGATCGAAAGTACTAAAATACGCCCAATGCTGGGAACCAGAGTaGGAGGTGGGGGCTGGAGTTGTAGCTCAGTGGTGGGAAACCTGC +
Preference number: 1 (lower is better)
Translates to: ERSKVLKYAQCWEPE*EVGAGVVAQWWETC
Trigger: GCAGGTTTCCCACCACTGAGCTACAACTCCAGCCCCCACCTCGCACTCTGGTTCCCAGCATTGGGCGTATTTTAGTACTTTCGATCTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 90 bp GAGGGAGAGATCACCATAGAAACCTTGGCCACATGTTTCCCAGATTaGGCTGTCAGAGGGATTATACTCTGCCATCTCTTCTGTCACCTC +
Preference number: 1 (lower is better)
Translates to: EGEITIETLATCFPD*AVRGIILCHLFCHL
Trigger: GAGGTGACAGAAGAGATGGCAGAGTATAATCCCTCTGACAGCCCAATCTGGGAAACATGTGGCCAAGGTTTCTATGGTGATCTCTCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR TCA 90 bp GGTACATCCTGTCTCCACCTTTGGTATGAACATAATACCAGCCACTaGGCATTTCCACGAAGGGCAAGTAAGGCTTGTCAGTGTGTTCAA +
Preference number: 1 (lower is better)
Translates to: GTSCLHLWYEHNTSH*AFPRRASKACQCVQ
Trigger: TTGAACACACTGACAAGCCTTACTTGCCCTTCGTGGAAATGCTCAGTGGCTGGTATTATGTTCATACCAAAGGTGGAGACAGGATGTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 90 bp TGTACCTTTGAGATGGTCTACCGCTCCTTACCTCCTAAGTCTCTCTaGATAAGACCCTGGGATAGTTACAACACTACAGGCTTTTTGGAA +
Preference number: 1 (lower is better)
Translates to: CTFEMVYRSLPPKSL*IRPWDSYNTTGFLE
Trigger: TTCCAAAAAGCCTGTAGTGTTGTAACTATCCCAGGGTCTTATCCAGAGAGACTTAGGAGGTAAGGAGCGGTAGACCATCTCAAAGGTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 90 bp AAATATTCCCGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTaGGAGGGAGAGATCACCATAGAAACCTTGGCCACATGTTTCCCA +
Preference number: 1 (lower is better)
Translates to: KYSRCNECSLQCQCV*EGEITIETLATCFP
Trigger: TGGGAAACATGTGGCCAAGGTTTCTATGGTGATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGAATATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR TCA 90 bp CAATACAGTCAGCCCTGCTTGTTCAGGGTTCCACCAACAACAGAGTaGAAATACATGAATAACATCACCATCTGTACTGAAGCCCAAACA +
Preference number: 1 (lower is better)
Translates to: QYSQPCLFRVPPTTE*KYMNNITICTEAQT
Trigger: TGTTTGGGCTTCAGTACAGATGGTGATGTTATTCATGTATTTTCACTCTGTTGTTGGTGGAACCCTGAACAAGCAGGGCTGACTGTATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
3UTR TCA 90 bp AGTCATTACACCACAGGACTTGGGGGAACAGAGTCTTGCATTTCGTaGCTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTTTTTG +
Preference number: 1 (lower is better)
Translates to: SHYTTGLGGTESCIS*LESTFHVEITVTFL
Trigger: CAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACTCTGTTCCCCCAAGTCCTGTGGTGTAATGACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR GCA 90 bp AAAATATACATCCAACCCACTTCAAAATATTCCCGCTGTAATGAATaGAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAGATCACCATA +
Preference number: 1 (lower is better)
Translates to: KIYIQPTSKYSRCNE*SLQCQCVWEGEITI
Trigger: TATGGTGATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGAATATTTTGAAGTGGGTTGGATGTATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 90 bp ATTACACCACAGGACTTGGGGGAACAGAGTCTTGCATTTCGTGACTaGAGTCAACATTTCATGTTGAAATTACTGTTACCTTTTTGTTGG +
Preference number: 1 (lower is better)
Translates to: ITPQDLGEQSLAFRD*SQHFMLKLLLPFCW
Trigger: CCAACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACTCTGTTCCCCCAAGTCCTGTGGTGTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR GCA 90 bp CTATTCCCATTCTATTTCATTGACAAGATTATTAAAAGTCTACAGTaGACAATACAGTCAGCCCTGCTTGTTCAGGGTTCCACCAACAAC +
Preference number: 1 (lower is better)
Translates to: LFPFYFIDKIIKSLQ*TIQSALLVQGSTNN
Trigger: GTTGTTGGTGGAACCCTGAACAAGCAGGGCTGACTGTATTGTGCACTGTAGACTTTTAATAATCTTGTCAATGAAATAGAATGGGAATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
3UTR TCA 90 bp GGGAACAGAGTCTTGCATTTCGTGACTGGAGTCAACATTTCATGTTaGAATTACTGTTACCTTTTTGTTGGCAAAGATACAGAGTCCATT +
Preference number: 1 (lower is better)
Translates to: GNRVLHFVTGVNISC*NYCYLFVGKDTESI
Trigger: AATGGACTCTGTATCTTTGCCAACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACTCTGTTCCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR GCA 90 bp CTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACCAGCACCACCATGCTTCACACCCTaGTGTAGGCCCCTGACGAAC +
Preference number: 2 (lower is better)
Translates to: LPQYIQWHGHVSHLPPAPPCFTP*CRPLTN
Trigger: GTTCGTCAGGGGCCTACAGCAGGGTGTGAAGCATGG...TGGTGCTGGTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
3UTR-3UTR TCA 90 bp TCCCGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAGATCTCTGCTTGTGGACCGTaGGGCCAGATCGGCCTGGGG +
Preference number: 2 (lower is better)
Translates to: SRCNECSLQCQCVWEGEISACGP*GQIGLG
Trigger: CCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGA...GATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CAA 90 bp ACTCCTGTTCAGATCATGCGTCCTTTTGTCTTCCAGGGAGTCTGCTaGTGGACCGTGAGGCCAGATCGGCCTGGGGACAGCATTTGTAGG +
Preference number: 2 (lower is better)
Translates to: TPVQIMRPFVFQGVC*WTVRPDRPGDSICR
Trigger: CCTACAAATGCTGTCCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTGGAAGACAAAAGGACGCATGATCTGAACAGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR TCA 90 bp CTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACCAGCACCATATCTGAAATGTGCGTaGGGACATGCATGGGCTCTA +
Preference number: 2 (lower is better)
Translates to: LPQYIQWHGHVSHLPPAPYLKCA*GHAWAL
Trigger: TAGAGCCCATGCATGTCCTCACGCACATTTCAGATA...TGGTGCTGGTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
3UTR-3UTR TCA 90 bp GGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGAACACATCAATTGACTCAAGGTaGCCTTGGCAAAAATCACCC +
Preference number: 2 (lower is better)
Translates to: GDTSPLDPQQIRLPNRNTSIDSR*PWQKSP
Trigger: GGGTGATTTTTGCCAAGGTCACCTTGAGTCAATTGA...TGTGTTCCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR TCA 90 bp TCGAAAGTACTAAAATACGCCCAATGCTGGGAACCAGAGTGCGAGGTGGGGGCTAAGTTAACTTTCCCCTaGAAGAGCTGCATTCCATGG +
Preference number: 2 (lower is better)
Translates to: SKVLKYAQCWEPECEVGAKLTFP*KSCIPW
Trigger: CCATGGAATGCAGCTCTTTCAGGGGAAAGTTAACTT...AGCCCCCACCTCGCACTCTGGTTCCCAGCATTGGGCGTATTTTAGTACTTTCGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp CTGGGGACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGTCCTGTCTCCACCTTTaGTATGAACATAATACCAGC +
Preference number: 2 (lower is better)
Translates to: LGTAFVGRTAAAQVSGFLSCLHL*YEHNTS
Trigger: GCTGGTATTATGTTCATACCAAAGGTGGAGACAGGA...CAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGTCCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR GCA 90 bp GGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGAACACACTACGTTGTCAAAACTaGAGTTTCCAAACGCTTGAG +
Preference number: 2 (lower is better)
Translates to: GDTSPLDPQQIRLPNRNTLRCQN*SFQTLE
Trigger: CTCAAGCGTTTGGAAACTGCAGTTTTGACAACGTAG...TGTGTTCCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp AAAAAGGGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGAAGAGCTGCATTCCATaGCAGAAATCCCAAGGGTTT +
Preference number: 2 (lower is better)
Translates to: KKGDTSPLDPQQIRLPNRKSCIP*QKSQGF
Trigger: AAACCCTTGGGATTTCTGCCATGGAATGCAGCTCTT...CCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCCCTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp GCGGGATTAAAGGTGTGCACTCCCACGCCCAGCTCCAGCAGGGCAAATATAAATTTTGATGCCATAGCTTaGATATCAGAAGTCCAGTGG +
Preference number: 2 (lower is better)
Translates to: AGLKVCTPTPSSSRANINFDAIA*ISEVQW
Trigger: CCACTGGACTTCTGATATCCAAGCTATGGCATCAAA...ATTTATATTTGCCCTGCTGGAGCTGGGCGTGGGAGTGCACACCTTTAATCCCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp AAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATTCAGGGAGTCTGCTTGTaGACCGTGAGGCCAGATCGG +
Preference number: 2 (lower is better)
Translates to: KRGDTLLAHIKENPTDQIQGVCL*TVRPDR
Trigger: CCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTG...AATTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR GCA 90 bp AGGGCAAATATAAATTACAAAAACTCCAACTGTACCTTTGAGATGGTCTACCGCAGGGAGGACTGCTGCTaGCCAGGTTTCAGGTTTTCT +
Preference number: 2 (lower is better)
Translates to: RANINYKNSNCTFEMVYRREDCC*PGFRFS
Trigger: AGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCT...GCGGTAGACCATCTCAAAGGTACAGTTGGAGTTTTTGTAATTTATATTTGCCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp AGGGCAAATATAAATTACAAAAACTCCAACTGTACCTTTGAGATGGTCTACCGCGTTGTAGCTCAGTGGTaGGAAACCTGCCTAGCATGC +
Preference number: 2 (lower is better)
Translates to: RANINYKNSNCTFEMVYRVVAQW*ETCLAC
Trigger: GCATGCTAGGCAGGTTTCCCACCACTGAGCTACAAC...GCGGTAGACCATCTCAAAGGTACAGTTGGAGTTTTTGTAATTTATATTTGCCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp CCCAATAAGCTAGCTGCCTTTGTTAAAATTACTGAAAACTCAATGCATGAGATACAGTGGCCACGGACTTaGTACATCCTGTCTCCACCT +
Preference number: 2 (lower is better)
Translates to: PNKLAAFVKITENSMHEIQWPRT*YILSPP
Trigger: AGGTGGAGACAGGATGTACCAAGTCCGTGGCCACTG...TATCTCATGCATTGAGTTTTCAGTAATTTTAACAAAGGCAGCTAGCTTATTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTACAGATTCCAAAATTGTaGTGTGAGCTCTGGACTCCA +
Preference number: 2 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVQIPKL*CELWTP
Trigger: TGGAGTCCAGAGCTCACACCACAATTTTGGAATCTG...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR TCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGATTCAGACATGGTCTATaGATGAGATCCCAAGAGGGA +
Preference number: 2 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRFRHGL*MRSQEG
Trigger: TCCCTCTTGGGATCTCATTCATAGACCATGTCTGAA...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp AGTCTTGCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTATATCAGAAGTCCAGTaGCCACGGACTTGGTACATC +
Preference number: 2 (lower is better)
Translates to: SLAFRDWSQHFMLKLLLPISEVQ*PRTWYI
Trigger: GATGTACCAAGTCCGTGGCCACTGGACTTCTGATAT...AGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp TGGATAAGACCCTGGGATAGTTACAACACTACAGGCTTTTTGGAAAACCCGAGACTGTTACCTTTTTGTTaGCAAAGATACAGAGTCCAT +
Preference number: 2 (lower is better)
Translates to: WIRPWDSYNTTGFLENPRLLPFC*QRYRVH
Trigger: ATGGACTCTGTATCTTTGCCAACAAAAAGGTAACAG...TCTCGGGTTTTCCAAAAAGCCTGTAGTGTTGTAACTATCCCAGGGTCTTATCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CAA 90 bp GGGGAACAGAGTCTTGCATTTCGTGACTGGAGTCAACATTTCATGTaGAAATTACTGTTACCTTTTTGTTGGCAAAGATACAGAGTCCAT +
Preference number: 2 (lower is better)
Translates to: GEQSLAFRDWSQHFM*KLLLPFCWQRYRVH
Trigger: ATGGACTCTGTATCTTTGCCAACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACTCTGTTCCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR GCA 90 bp TATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCATGGATTAAAAGTCTACAGTaGACAATACAGTCAGCCCTG +
Preference number: 2 (lower is better)
Translates to: YEISHFTRNSSSVHTVAWIKSLQ*TIQSAL
Trigger: CAGGGCTGACTGTATTGTGCACTGTAGACTTTTAAT...CCATGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
3UTR-3UTR CCA 90 bp AGGGCAAATATAAATTACAAAAACTCCAACTGTACCTTTGAGATGGTCTACCGCCCCTCAGTGGGAAGTTaGTTATCTTATATCAAGGTC +
Preference number: 2 (lower is better)
Translates to: RANINYKNSNCTFEMVYRPSVGS*LSYIKV
Trigger: GACCTTGATATAAGATAACCAACTTCCCACTGAGGG...GCGGTAGACCATCTCAAAGGTACAGTTGGAGTTTTTGTAATTTATATTTGCCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR GCA 90 bp GCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTTTTTGTCCCAGGTTCTTTTCATaGCCAAATCTTCAGACATGG +
Preference number: 2 (lower is better)
Translates to: AFRDWSQHFMLKLLLPFCPRFFS*PNLQTW
Trigger: CCATGTCTGAAGATTTGGGCATGAAAAGAACCTGGG...ACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp CCCAATAAGCTAGCTGCCTTTGTTAAAATTACTGAAAACTCAATGCATGAGATAAGGTCGCGAGGTGTTTaGAGCTTCAGATTCCAAAAT +
Preference number: 2 (lower is better)
Translates to: PNKLAAFVKITENSMHEIRSRGV*SFRFQN
Trigger: ATTTTGGAATCTGAAGCTCCAAACACCTCGCGACCT...TATCTCATGCATTGAGTTTTCAGTAATTTTAACAAAGGCAGCTAGCTTATTGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR GCA 90 bp AGGGCAAATATAAATTACAAAAACTCCAACTGTACCTTTGAGATGGTCTACCGCCTTTATTTTCATTTTTaGCCTCAGTGGGAAGTTGGT +
Preference number: 2 (lower is better)
Translates to: RANINYKNSNCTFEMVYRLYFHF*PQWEVG
Trigger: ACCAACTTCCCACTGAGGGCAAAAATGAAAATAAAG...GCGGTAGACCATCTCAAAGGTACAGTTGGAGTTTTTGTAATTTATATTTGCCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CCA 90 bp AGTCTTGCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTCCAAATCTTCAGACATaGTCTATGAATGAGATCCCA +
Preference number: 2 (lower is better)
Translates to: SLAFRDWSQHFMLKLLLPPNLQT*SMNEIP
Trigger: TGGGATCTCATTCATAGACCATGTCTGAAGATTTGG...AGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 72 bp CCAGAGTGCGAGGTGGGGGCTGGAGTTGTAGCTCAGTaGTGGGAAACCTGCCTAGCATGCAAGAGGCCCTGG +
Preference number: 3 (lower is better)
Translates to: PECEVGAGVVAQ*WETCLACKRPW
Trigger: CCAGGGCCTCTTGCATGCTAGGCAGGTTTCCCACCACTGAGCTACAACTCCAGCCCCCACCTCGCACTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 72 bp CGCCCAATGCTGGGAACCAGAGTGCGAGGTGGGGGCTaGAGTTGTAGCTCAGTGGTGGGAAACCTGCCTAGC +
Preference number: 3 (lower is better)
Translates to: RPMLGTRVRGGG*SCSSVVGNLPS
Trigger: GCTAGGCAGGTTTCCCACCACTGAGCTACAACTCCAGCCCCCACCTCGCACTCTGGTTCCCAGCATTGGGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR TCA 72 bp GTCCTTTTGTCTTCCAGGGAGTCTGCTTGTGGACCGTaGGGCCAGATCGGCCTGGGGACAGCATTTGTAGGG +
Preference number: 3 (lower is better)
Translates to: VLLSSRESACGP*GQIGLGTAFVG
Trigger: CCCTACAAATGCTGTCCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTGGAAGACAAAAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR GCA 72 bp GTTCAGATCATGCGTCCTTTTGTCTTCCAGGGAGTCTaGTTGTGGACCGTGAGGCCAGATCGGCCTGGGGAC +
Preference number: 3 (lower is better)
Translates to: VQIMRPFVFQGV*LWTVRPDRPGD
Trigger: GTCCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTGGAAGACAAAAGGACGCATGATCTGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 72 bp ATCATGCGTCCTTTTGTCTTCCAGGGAGTCTGCTTGTaGACCGTGAGGCCAGATCGGCCTGGGGACAGCATT +
Preference number: 3 (lower is better)
Translates to: IMRPFVFQGVCL*TVRPDRPGDSI
Trigger: AATGCTGTCCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTGGAAGACAAAAGGACGCATGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR TCA 72 bp AGTCAGGGGTTCTCTGTGTATAGCCCTAGCAGTCCTTaGACTCTTTGTAGGAGCGGCCGGCCTCCAACTCAA +
Preference number: 3 (lower is better)
Translates to: SQGFSVYSPSSP*TLCRSGRPPTQ
Trigger: TTGAGTTGGAGGCCGGCCGCTCCTACAAAGAGTTCAAGGACTGCTAGGGCTATACACAGAGAACCCCTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR GCA 72 bp CCAGATCGGCCTGGGGACAGCATTTGTAGGGAGGACTaGTGCTGCCCAGGTTTCAGGTTTTCTGAAACAAGA +
Preference number: 3 (lower is better)
Translates to: PDRPGDSICRED*CCPGFRFSETR
Trigger: TCTTGTTTCAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGTCCCCAGGCCGATCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR GCA 72 bp AGCATCGAAAGATCGAAAGTACTAAAATACGCCCAATaGTGGGAACCAGAGTGCGAGGTGGGGGCTGGAGTT +
Preference number: 3 (lower is better)
Translates to: SIERSKVLKYAQ*WEPECEVGAGV
Trigger: AACTCCAGCCCCCACCTCGCACTCTGGTTCCCAGCATTGGGCGTATTTTAGTACTTTCGATCTTTCGATGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 72 bp GAGATGGTCTACCGCTCCTTACCTCCTAAGTCTCTCTaGATAAGACCCTGGGATAGTTACAACACTACAGGC +
Preference number: 3 (lower is better)
Translates to: EMVYRSLPPKSL*IRPWDSYNTTG
Trigger: GCCTGTAGTGTTGTAACTATCCCAGGGTCTTATCCAGAGAGACTTAGGAGGTAAGGAGCGGTAGACCATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR GCA 72 bp AGCTTTAACAAAGGGGCTCAACTCCTGTTCAGATCATaGGTCCTTTTGTCTTCCAGGGAGTCTGCTTGTGGA +
Preference number: 3 (lower is better)
Translates to: SFNKGAQLLFRS*VLLSSRESACG
Trigger: TCCACAAGCAGACTCCCTGGAAGACAAAAGGACGCATGATCTGAACAGGAGTTGAGCCCCTTTGTTAAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 72 bp TCTTTTGATGCCATAGCTTGGATATCAGAAGTCCAGTaGCCACGGACTTGGTACATCCTGTCTCCACCTTTG +
Preference number: 3 (lower is better)
Translates to: SFDAIAWISEVQ*PRTWYILSPPL
Trigger: CAAAGGTGGAGACAGGATGTACCAAGTCCGTGGCCACTGGACTTCTGATATCCAAGCTATGGCATCAAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 72 bp CGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTaGGAGGGAGAGATCACCATAGAAACCTTGGCCACA +
Preference number: 3 (lower is better)
Translates to: RCNECSLQCQCV*EGEITIETLAT
Trigger: TGTGGCCAAGGTTTCTATGGTGATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CAA 90 bp TGGATAAGACCCTGGGATAGTTACAACACTACAGGCTTTTTGGAAAACCCGAGAGAGGTCGCGAGGTGTTaGGAGCTTCAGATTCCAAAA +
Preference number: 3 (lower is better)
Translates to: WIRPWDSYNTTGFLENPREVARC*ELQIPK
Trigger: TTTTGGAATCTGAAGCTCCAAACACCTCGCGACCTC...TCTCGGGTTTTCCAAAAAGCCTGTAGTGTTGTAACTATCCCAGGGTCTTATCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR TCA 72 bp TGTCTCCACCTTTGGTATGAACATAATACCAGCCACTaGGCATTTCCACGAAGGGCAAGTAAGGCTTGTCAG +
Preference number: 3 (lower is better)
Translates to: CLHLWYEHNTSH*AFPRRASKACQ
Trigger: CTGACAAGCCTTACTTGCCCTTCGTGGAAATGCTCAGTGGCTGGTATTATGTTCATACCAAAGGTGGAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 72 bp ATCACCATAGAAACCTTGGCCACATGTTTCCCAGATTaGGCTGTCAGAGGGATTATACTCTGCCATCTCTTC +
Preference number: 3 (lower is better)
Translates to: ITIETLATCFPD*AVRGIILCHLF
Trigger: GAAGAGATGGCAGAGTATAATCCCTCTGACAGCCCAATCTGGGAAACATGTGGCCAAGGTTTCTATGGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR TCA 72 bp TGGGAAACCTGCCTAGCATGCAAGAGGCCCTGGGTCTaGTTTCTAGCATCACACACAAAAGTGTTATACATA +
Preference number: 3 (lower is better)
Translates to: WETCLACKRPWV*FLASHTKVLYI
Trigger: TATGTATAACACTTTTGTGTGTGATGCTAGAAATCAGACCCAGGGCCTCTTGCATGCTAGGCAGGTTTCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR GCA 72 bp ATCCAACCCACTTCAAAATATTCCCGCTGTAATGAATaGAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAG +
Preference number: 3 (lower is better)
Translates to: IQPTSKYSRCNE*SLQCQCVWEGE
Trigger: CTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGAATATTTTGAAGTGGGTTGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 72 bp TTTCCCAGGTTCTTTTCATGCCCAAATCTTCAGACATaGTCTATGAATGAGATCCCAAGAGGGAAGCACAGG +
Preference number: 3 (lower is better)
Translates to: FPRFFSCPNLQT*SMNEIPRGKHR
Trigger: CCTGTGCTTCCCTCTTGGGATCTCATTCATAGACCATGTCTGAAGATTTGGGCATGAAAAGAACCTGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 72 bp CGCTCCTTACCTCCTAAGTCTCTCTGGATAAGACCCTaGGATAGTTACAACACTACAGGCTTTTTGGAAAAC +
Preference number: 3 (lower is better)
Translates to: RSLPPKSLWIRP*DSYNTTGFLEN
Trigger: GTTTTCCAAAAAGCCTGTAGTGTTGTAACTATCCCAGGGTCTTATCCAGAGAGACTTAGGAGGTAAGGAGCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CCA 72 bp CAATTGACTCAAGGTGACCTTGGCAAAAATCACCCTTaGTCTACGTTGTCAAAACTGCAGTTTCCAAACGCT +
Preference number: 3 (lower is better)
Translates to: QLTQGDLGKNHP*STLSKLQFPNA
Trigger: AGCGTTTGGAAACTGCAGTTTTGACAACGTAGACCAAGGGTGATTTTTGCCAAGGTCACCTTGAGTCAATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CAA 90 bp AAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATTCTTCAGATTCCAAAATaGTGGTGTGAGCTCTGGACT +
Preference number: 3 (lower is better)
Translates to: KRGDTLLAHIKENPTDQILQIPK*WCELWT
Trigger: AGTCCAGAGCTCACACCACAATTTTGGAATCTGAAG...AATTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CAA 90 bp TTGTTAAAATTACTGAAAACTCAATGCATGAGATATAGCGGTCCTGACCTAATCGGTTTGAAGAGTCAATaGACTCAAGGTGACCTTGGC +
Preference number: 3 (lower is better)
Translates to: LLKLLKTQCMRYSGPDLIGLKSQ*TQGDLG
Trigger: GCCAAGGTCACCTTGAGTCAATTGACTCTTCAAACC...GATTAGGTCAGGACCGCTATATCTCATGCATTGAGTTTTCAGTAATTTTAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR TCA 72 bp TGTTCAGGGTTCCACCAACAACAGAGTGAAAATACATaGATAACATCACCATCTGTACTGAAGCCCAAACAT +
Preference number: 3 (lower is better)
Translates to: CSGFHQQQSENT*ITSPSVLKPKH
Trigger: ATGTTTGGGCTTCAGTACAGATGGTGATGTTATTCATGTATTTTCACTCTGTTGTTGGTGGAACCCTGAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
3UTR-3UTR CAA 90 bp AGGGCAAATATAAATTACAAAAACTCCAACTGTACCTTTGAGATGGTCTACCGCAGAAATCCCAAGGGTTaGAAGAGTCAATTGACTCAA +
Preference number: 3 (lower is better)
Translates to: RANINYKNSNCTFEMVYRRNPKG*KSQLTQ
Trigger: TTGAGTCAATTGACTCTTCAAACCCTTGGGATTTCT...GCGGTAGACCATCTCAAAGGTACAGTTGGAGTTTTTGTAATTTATATTTGCCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR GCA 72 bp CTCAGCCTATTACAATGGTCCCTTTATTTTCATTTTTaGCCTCAGTGGGAAGTTGGTTATCTTATATCAAGG +
Preference number: 3 (lower is better)
Translates to: LSLLQWSLYFHF*PQWEVGYLISR
Trigger: CCTTGATATAAGATAACCAACTTCCCACTGAGGGCAAAAATGAAAATAAAGGGACCATTGTAATAGGCTGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR-3UTR CAA 90 bp TCACTTTATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGACATATGTAAGAGATTaGAGCATCCGTAGACTTTTG +
Preference number: 3 (lower is better)
Translates to: SLYEISHFTRNSSSVHTVTYVRD*SIRRLL
Trigger: CAAAAGTCTACGGATGCTCAAATCTCTTACATATGT...CACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCATAAAGTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
3UTR TCA 72 bp GTCTTGCATTTCGTGACTGGAGTCAACATTTCATGTTaGAATTACTGTTACCTTTTTGTTGGCAAAGATACA +
Preference number: 3 (lower is better)
Translates to: VLHFVTGVNISC*NYCYLFVGKDT
Trigger: TGTATCTTTGCCAACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp GCACCAGTCTCCCCCACAGTGAGGGCCTCACCCCATGCTTCACACCCTGCTGTACAGCGGCCCCTCCACTaGGCCGAACTGGGTGCGCTT +
Preference number: 4 (lower is better)
Translates to: APVSPTVRASPHASHPAVQRPLH*AELGAL
Trigger: AAGCGCACCCAGTTCGGCCCAGTGGAGGGGCCGCTG...TACAGCAGGGTGTGAAGCATGGGGTGAGGCCCTCACTGTGGGGGAGACTGGTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp TTTGTCTTCCAGGGAGTCTGCTTGTGGACCGTGAGGCCAGATCGGCCTGGGGACGCTACCTGGATGTGTTaGACCTGGATGGCGTGCTGC +
Preference number: 4 (lower is better)
Translates to: FVFQGVCLWTVRPDRPGDATWMC*TWMACC
Trigger: GCAGCACGCCATCCAGGTGCAACACATCCAGGTAGC...GTCCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTGGAAGACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CAA 72 bp CAGATCATGCGTCCTTTTGTCTTCCAGGGAGTCTGCTaGTGGACCGTGAGGCCAGATCGGCCTGGGGACAGC +
Preference number: 4 (lower is better)
Translates to: QIMRPFVFQGVC*WTVRPDRPGDS
Trigger: GCTGTCCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTGGAAGACAAAAGGACGCATGATCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACCAGCACCACGGGGCGGGTCAGGCTaGCAGTCATCAACATCTGTG +
Preference number: 4 (lower is better)
Translates to: LPQYIQWHGHVSHLPPAPRGGSG*QSSTSV
Trigger: CACAGATGTTGATGACTGGCAGCCTGACCCGCCCCG...TGGTGCTGGTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR TCA 90 bp TCGAAAGTACTAAAATACGCCCAATGCTGGGAACCAGAGTGCGAGGTGGGGGCTGGATATGGGAGGGGCTaGGCCCCTGCTGTACCTGCT +
Preference number: 4 (lower is better)
Translates to: SKVLKYAQCWEPECEVGAGYGRG*APAVPA
Trigger: AGCAGGTACAGCAGGGGCTCAGCCCCTCCCATATCC...AGCCCCCACCTCGCACTCTGGTTCCCAGCATTGGGCGTATTTTAGTACTTTCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp AAAAAGGGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGCCCTGCTGTACCTGCTaGGCAGAGGGGCTCAATGGC +
Preference number: 4 (lower is better)
Translates to: KKGDTSPLDPQQIRLPNRPCCTC*AEGLNG
Trigger: GCCATTGAGCCCCTCTGCTCAGCAGGTACAGCAGGG...CCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCCCTTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp GCGGGATTAAAGGTGTGCACTCCCACGCCCAGCTCCAGCAGGGCAAATATAAATGAATGCCGGAGCATGTaGAGTCTCAGCTTGTCGGGG +
Preference number: 4 (lower is better)
Translates to: AGLKVCTPTPSSSRANINECRSM*SLSLSG
Trigger: CCCCGACAAGCTGAGACTGCACATGCTCCGGCATTC...ATTTATATTTGCCCTGCTGGAGCTGGGCGTGGGAGTGCACACCTTTAATCCCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp AAAAAGGGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGGGGCTGAACCTGGACTaGTCCAGAGAGAGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: KKGDTSPLDPQQIRLPNRGLNLD*SRESRG
Trigger: GCCTCTGCTCTCTCTGGAGCAGTCCAGGTTCAGCCC...CCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCCCTTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp AAAAAGGGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGCGGGGCGGGTCAGGCTaGCAGTCATCAACATCTGTG +
Preference number: 4 (lower is better)
Translates to: KKGDTSPLDPQQIRLPNRRGGSG*QSSTSV
Trigger: CACAGATGTTGATGACTGGCAGCCTGACCCGCCCCG...CCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCCCTTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp CTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACCAGCACCATGTTCTAGGTGGTTCTaGGCTGGGCGCACAAACATC +
Preference number: 4 (lower is better)
Translates to: LPQYIQWHGHVSHLPPAPCSRWF*AGRTNI
Trigger: GATGTTTGTGCGCCCAGCCCAGAACCACCTAGAACA...TGGTGCTGGTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp GCGGGATTAAAGGTGTGCACTCCCACGCCCAGCTCCAGCAGGGCAAATATAAATGCTCTCCTCTTGCTGTaGCTGCAGGTGCAAGGTGTG +
Preference number: 4 (lower is better)
Translates to: AGLKVCTPTPSSSRANINALLLL*LQVQGV
Trigger: CACACCTTGCACCTGCAGCCACAGCAAGAGGAGAGC...ATTTATATTTGCCCTGCTGGAGCTGGGCGTGGGAGTGCACACCTTTAATCCCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp AAAAAGGGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGGCTGTCAGAGTGGTCTaGGTAGGCACGAGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: KKGDTSPLDPQQIRLPNRAVRVV*VGTRLS
Trigger: GGAGAGCCTCGTGCCTACCCAGACCACTCTGACAGC...CCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCCCTTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp GCGGGATTAAAGGTGTGCACTCCCACGCCCAGCTCCAGCAGGGCAAATATAAATTGTGTAGTCTGCTGTTaGCTGGGGCCTGTGGAGTCC +
Preference number: 4 (lower is better)
Translates to: AGLKVCTPTPSSSRANINCVVCC*LGPVES
Trigger: GGACTCCACAGGCCCCAGCCAACAGCAGACTACACA...ATTTATATTTGCCCTGCTGGAGCTGGGCGTGGGAGTGCACACCTTTAATCCCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACCAGCACCATGTAAACAGAGTCTGTaGAGCTTCCACCGGGTGGAT +
Preference number: 4 (lower is better)
Translates to: LPQYIQWHGHVSHLPPAPCKQSL*SFHRVD
Trigger: ATCCACCCGGTGGAAGCTGCACAGACTCTGTTTACA...TGGTGCTGGTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp AAGAAACTCTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACGGATGCAAGGGGCCATaGTTCGGGCACACGGAAGAA +
Preference number: 4 (lower is better)
Translates to: KKLFLSTYSGMGTSATYHGCKGP*FGHTEE
Trigger: TTCTTCCGTGTGCCCGAAGCATGGCCCCTTGCATCC...GTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAGAGTTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp CTGGGGACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGCTTGTGTGGAAGAACTaGCTTGGATATGGGAGGGGC +
Preference number: 4 (lower is better)
Translates to: LGTAFVGRTAAAQVSGFLLVWKN*LGYGRG
Trigger: GCCCCTCCCATATCCAAGGCAGTTCTTCCACACAAG...CAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGTCCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp GGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGAACACATGCTGCTGGAGAGCCTaGCCTTGTGTGGAAGAACTG +
Preference number: 4 (lower is better)
Translates to: GDTSPLDPQQIRLPNRNTCCWRA*PCVEEL
Trigger: CAGTTCTTCCACACAAGGGCAGGCTCTCCAGCAGCA...TGTGTTCCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp GCGGGATTAAAGGTGTGCACTCCCACGCCCAGCTCCAGCAGGGCAAATATAAATGAGGAATTCTGCTGCTaGTGGAGAGCCTGCCCTTGT +
Preference number: 4 (lower is better)
Translates to: AGLKVCTPTPSSSRANINEEFCC*WRACPC
Trigger: ACAAGGGCAGGCTCTCCAGCAGCAGCAGAATTCCTC...ATTTATATTTGCCCTGCTGGAGCTGGGCGTGGGAGTGCACACCTTTAATCCCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CTGGGGACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGAGTGCACCTGTGCAGTaGTCTGTTCATGGTCTGCAG +
Preference number: 4 (lower is better)
Translates to: LGTAFVGRTAAAQVSGFLSAPVQ*SVHGLQ
Trigger: CTGCAGACCATGAACAGAGCACTGCACAGGTGCACT...CAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGTCCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp GCGGGATTAAAGGTGTGCACTCCCACGCCCAGCTCCAGCAGGGCAAATATAAATGCAGTGCTCTGTTCATaGTCTGCAGACGTTGGCCAC +
Preference number: 4 (lower is better)
Translates to: AGLKVCTPTPSSSRANINAVLCS*SADVGH
Trigger: GTGGCCAACGTCTGCAGACCATGAACAGAGCACTGC...ATTTATATTTGCCCTGCTGGAGCTGGGCGTGGGAGTGCACACCTTTAATCCCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp CTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACCAGCACCAGCACCTGTTGAGCTGTaGCATCCTGTTGGACATAAG +
Preference number: 4 (lower is better)
Translates to: LPQYIQWHGHVSHLPPAPAPVEL*HPVGHK
Trigger: CTTATGTCCAACAGGATGCCACAGCTCAACAGGTGC...TGGTGCTGGTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp TGTGAAGGGGAGGGAGGGATCCTGGAAGCAACAGGAAGGCTGAAGTCACTCAATGCTGGCAGGCAGCTGTaGATCCAGTTCTGTACCTTC +
Preference number: 4 (lower is better)
Translates to: CEGEGGILEATGRLKSLNAGRQL*IQFCTF
Trigger: GAAGGTACAGAACTGGATCCACAGCTGCCTGCCAGC...ATTGAGTGACTTCAGCCTTCCTGTTGCTTCCAGGATCCCTCCCTCCCCTTCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp GAGGTCGCGAGGTGTTTGGAGCTTCAGATTCCAAAATTGTGGTGTGAGCTCTGGGGCTGCCCAGCTACCTaGATGTGTTGCACCTGGATG +
Preference number: 4 (lower is better)
Translates to: EVARCLELQIPKLWCELWGCPAT*MCCTWM
Trigger: CATCCAGGTGCAACACATCCAGGTAGCTGGGCAGCC...CCAGAGCTCACACCACAATTTTGGAATCTGAAGCTCCAAACACCTCGCGACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp AAAAAGGGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGAGCAGAGGGGCTCAATaGCTGCCCAGCTACCTGGAT +
Preference number: 4 (lower is better)
Translates to: KKGDTSPLDPQQIRLPNRSRGAQ*LPSYLD
Trigger: ATCCAGGTAGCTGGGCAGCCATTGAGCCCCTCTGCT...CCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCCCTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp TCGAAAGTACTAAAATACGCCCAATGCTGGGAACCAGAGTGCGAGGTGGGGGCTTCTGTGATCACAAACTaGCCTGGGGGCAGTGTCATC +
Preference number: 4 (lower is better)
Translates to: SKVLKYAQCWEPECEVGASVITN*PGGSVI
Trigger: GATGACACTGCCCCCAGGTCAGTTTGTGATCACAGA...AGCCCCCACCTCGCACTCTGGTTCCCAGCATTGGGCGTATTTTAGTACTTTCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp GAGGTCGCGAGGTGTTTGGAGCTTCAGATTCCAAAATTGTGGTGTGAGCTCTGGCCACACCACTGTCTGTaGTCACAAACTGACCTGGGG +
Preference number: 4 (lower is better)
Translates to: EVARCLELQIPKLWCELWPHHCL*SQTDLG
Trigger: CCCCAGGTCAGTTTGTGATCACAGACAGTGGTGTGG...CCAGAGCTCACACCACAATTTTGGAATCTGAAGCTCCAAACACCTCGCGACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp GGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGAACACAGCTCTGTTCATGGTCTaGAGACGTTGGCCACACATG +
Preference number: 4 (lower is better)
Translates to: GDTSPLDPQQIRLPNRNTALFMV*RRWPHM
Trigger: CATGTGTGGCCAACGTCTGCAGACCATGAACAGAGC...TGTGTTCCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACCAGCACCAAACAAAGTGCACCTGTaGAGTGCTCTGTTCATGGTC +
Preference number: 4 (lower is better)
Translates to: LPQYIQWHGHVSHLPPAPNKVHL*SALFMV
Trigger: GACCATGAACAGAGCACTGCACAGGTGCACTTTGTT...TGGTGCTGGTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp TGTGAAGGGGAGGGAGGGATCCTGGAAGCAACAGGAAGGCTGAAGTCACTCAATAGAGGGTCGGAACCATaGACACTCTCAATGGAAGGC +
Preference number: 4 (lower is better)
Translates to: CEGEGGILEATGRLKSLNRGSEP*TLSMEG
Trigger: GCCTTCCATTGAGAGTGTGCATGGTTCCGACCCTCT...ATTGAGTGACTTCAGCCTTCCTGTTGCTTCCAGGATCCCTCCCTCCCCTTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp TGTGAAGGGGAGGGAGGGATCCTGGAAGCAACAGGAAGGCTGAAGTCACTCAATCGAACTGGGTGCGCTTaGGAATCCGTCTTTTGGAGA +
Preference number: 4 (lower is better)
Translates to: CEGEGGILEATGRLKSLNRTGCA*ESVFWR
Trigger: TCTCCAAAAGACGGATTCCCAAGCGCACCCAGTTCG...ATTGAGTGACTTCAGCCTTCCTGTTGCTTCCAGGATCCCTCCCTCCCCTTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp AAAAAGGGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGAGGCGGGGTTTCCTGTaGCAGCTGAGGAATTGGGAT +
Preference number: 4 (lower is better)
Translates to: KKGDTSPLDPQQIRLPNRRRGFL*QLRNWD
Trigger: ATCCCAATTCCTCAGCTGCCACAGGAAACCCCGCCT...CCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCCCTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp CCTAGCATGCAAGAGGCCCTGGGTCTGATTTCTAGCATCACACACAAAAGTGTTTTCCCCTCCCGCCCATaGAAGCGCAAGTGTTGGTCC +
Preference number: 4 (lower is better)
Translates to: PSMQEALGLISSITHKSVFPSRP*KRKCWS
Trigger: GGACCAACACTTGCGCTTCCATGGGCGGGAGGGGAA...AACACTTTTGTGTGTGATGCTAGAAATCAGACCCAGGGCCTCTTGCATGCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp TCGAAAGTACTAAAATACGCCCAATGCTGGGAACCAGAGTGCGAGGTGGGGGCTTCAGTGGTGTGTGGATaGTGTTGGGAAGCTGGGCAT +
Preference number: 4 (lower is better)
Translates to: SKVLKYAQCWEPECEVGASVVCG*CWEAGH
Trigger: ATGCCCAGCTTCCCAACACCATCCACACACCACTGA...AGCCCCCACCTCGCACTCTGGTTCCCAGCATTGGGCGTATTTTAGTACTTTCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp ACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGAAACAAGAACTGCCTTGGATATaGGAGGGGCTGAGCCCCTGC +
Preference number: 4 (lower is better)
Translates to: TAFVGRTAAAQVSGFLKQELPWI*EGLSPC
Trigger: GCAGGGGCTCAGCCCCTCCCATATCCAAGGCAGTTC...TTGTTTCAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp TCCCGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAGATCTGCAGGTGCAAGGTGTaGGTTTCTGGTTCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: SRCNECSLQCQCVWEGEICRCKV*VSGSCS
Trigger: GGAGCAGGAACCAGAAACTCACACCTTGCACCTGCA...GATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp GCATCCGTAGACTTTTGTAACTGTGAAGGGGAGGGAGGGATCCTGGAAGCAACAGACGTTGGCCACACATaGGCGCTTTCATCTTTGGGA +
Preference number: 4 (lower is better)
Translates to: ASVDFCNCEGEGGILEATDVGHT*ALSSLG
Trigger: TCCCAAAGATGAAAGCGCTCATGTGTGGCCAACGTC...TGTTGCTTCCAGGATCCCTCCCTCCCCTTCACAGTTACAAAAGTCTACGGATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp AAAAAGGGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGGTAGGAGGCACCATCTaGTGTATACACCACCTGCTG +
Preference number: 4 (lower is better)
Translates to: KKGDTSPLDPQQIRLPNRVGGTI*CIHHLL
Trigger: CAGCAGGTGGTGTATACAGCAGATGGTGCCTCCTAC...CCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCCCTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACCAGCACCAGCACACGGAAGAATGTaGATTGTTACACTCCTCACA +
Preference number: 4 (lower is better)
Translates to: LPQYIQWHGHVSHLPPAPAHGRM*IVTLLT
Trigger: TGTGAGGAGTGTAACAATGCACATTCTTCCGTGTGC...TGGTGCTGGTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp TATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCATGGAGGCAGGCTCGCTCTTaGCCGGGTGAGCACAGGCCG +
Preference number: 4 (lower is better)
Translates to: YEISHFTRNSSSVHTVAWRQARS*PGEHRP
Trigger: CGGCCTGTGCTCACCCGGGCAAGAGCGAGCCTGCCT...CCATGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTAAGGCAGGCTCGCTCTTaGCCGGGTGAGCACAGGCCG +
Preference number: 4 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVRQARS*PGEHRP
Trigger: CGGCCTGTGCTCACCCGGGCAAGAGCGAGCCTGCCT...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp AAAAAGGGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGGTCTTGCTGCTATACTaGTTGGAGCAGTGTGGGCAG +
Preference number: 4 (lower is better)
Translates to: KKGDTSPLDPQQIRLPNRVLLLY*LEQCGQ
Trigger: CTGCCCACACTGCTCCAAGCAGTATAGCAGCAAGAC...CCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCCCTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp GAGGTCGCGAGGTGTTTGGAGCTTCAGATTCCAAAATTGTGGTGTGAGCTCTGGGTGTGTGGATGGTGTTaGGAAGCTGGGCATACTCTG +
Preference number: 4 (lower is better)
Translates to: EVARCLELQIPKLWCELWVCGWC*EAGHTL
Trigger: CAGAGTATGCCCAGCTTCCCAACACCATCCACACAC...CCAGAGCTCACACCACAATTTTGGAATCTGAAGCTCCAAACACCTCGCGACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp ACTCCCACGCCCAGCTCCAGCAGGGCAAATATAAATTACAAAAACTCCAACTGTCTGCTGAGACTGATGTaGGGAAGTGGCCGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: TPTPSSSRANINYKNSNCLLRLM*GSGRSH
Trigger: GTGGCTCCGGCCACTTCCCCACATCAGTCTCAGCAG...ACAGTTGGAGTTTTTGTAATTTATATTTGCCCTGCTGGAGCTGGGCGTGGGAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp GAGGTCGCGAGGTGTTTGGAGCTTCAGATTCCAAAATTGTGGTGTGAGCTCTGGATGGTCTGCAGACGTTaGCCACACATGAGCGCTTTC +
Preference number: 4 (lower is better)
Translates to: EVARCLELQIPKLWCELWMVCRR*PHMSAF
Trigger: GAAAGCGCTCATGTGTGGCCAACGTCTGCAGACCAT...CCAGAGCTCACACCACAATTTTGGAATCTGAAGCTCCAAACACCTCGCGACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp TCCCGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAGATCGACGTTGGCCACACATaGGCGCTTTCATCTTTGGGA +
Preference number: 4 (lower is better)
Translates to: SRCNECSLQCQCVWEGEIDVGHT*ALSSLG
Trigger: TCCCAAAGATGAAAGCGCTCATGTGTGGCCAACGTC...GATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp GCGGGATTAAAGGTGTGCACTCCCACGCCCAGCTCCAGCAGGGCAAATATAAATCCATCTTGGTCTTGCTaGTATACTGCTTGGAGCAGT +
Preference number: 4 (lower is better)
Translates to: AGLKVCTPTPSSSRANINPSWSC*YTAWSS
Trigger: ACTGCTCCAAGCAGTATAGCAGCAAGACCAAGATGG...ATTTATATTTGCCCTGCTGGAGCTGGGCGTGGGAGTGCACACCTTTAATCCCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp GAGGTCGCGAGGTGTTTGGAGCTTCAGATTCCAAAATTGTGGTGTGAGCTCTGGGCACCATCTTGGTCTTaGTGCTATACTGCTTGGAGC +
Preference number: 4 (lower is better)
Translates to: EVARCLELQIPKLWCELWAPSWS*CYTAWS
Trigger: GCTCCAAGCAGTATAGCAGCAAGACCAAGATGGTGC...CCAGAGCTCACACCACAATTTTGGAATCTGAAGCTCCAAACACCTCGCGACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGACAGCGGCCCCTCCACTaGGCCGAACTGGGTGCGCTT +
Preference number: 4 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRQRPLH*AELGAL
Trigger: AAGCGCACCCAGTTCGGCCCAGTGGAGGGGCCGCTG...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp AAAAAGGGCGACACCTCCCCACTAGATCCACAGCAAATACGACTCCCAAACAGGCAAGGTGTGAGTTTCTaGTTCCTGCTCCAGAGAAGG +
Preference number: 4 (lower is better)
Translates to: KKGDTSPLDPQQIRLPNRQGVSF*FLLQRR
Trigger: CCTTCTCTGGAGCAGGAACCAGAAACTCACACCTTG...CCTGTTTGGGAGTCGTATTTGCTGTGGATCTAGTGGGGAGGTGTCGCCCTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp TCCCGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAGATCTCCCTCTCGGGGTTATaGATCCTTTGCATGTGCTCT +
Preference number: 4 (lower is better)
Translates to: SRCNECSLQCQCVWEGEISLSGL*ILCMCS
Trigger: AGAGCACATGCAAAGGATGCATAACCCCGAGAGGGA...GATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp GCATCCGTAGACTTTTGTAACTGTGAAGGGGAGGGAGGGATCCTGGAAGCAACATGTACCTTCAGTTCCTaGTTGGGCTCCACGTTCTTT +
Preference number: 4 (lower is better)
Translates to: ASVDFCNCEGEGGILEATCTFSS*LGSTFF
Trigger: AAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTACA...TGTTGCTTCCAGGATCCCTCCCTCCCCTTCACAGTTACAAAAGTCTACGGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp AAGAAACTCTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACATAAGCTACCTGGGCTaGGTCTGTAAACAGAGTCTG +
Preference number: 4 (lower is better)
Translates to: KKLFLSTYSGMGTSATYHISYLG*VCKQSL
Trigger: CAGACTCTGTTTACAGACCCAGCCCAGGTAGCTTAT...GTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAGAGTTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp ATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCATGGGTCCACTGGGCCGAACTaGGTGCGCTTGGGAATCCGT +
Preference number: 4 (lower is better)
Translates to: MKSPISQETLPQYIQWHGSTGPN*VRLGIR
Trigger: ACGGATTCCCAAGCGCACCCAGTTCGGCCCAGTGGA...CCCATGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp GCATCCGTAGACTTTTGTAACTGTGAAGGGGAGGGAGGGATCCTGGAAGCAACACCTTCAGTTCCTGCTTaGGCTCCACGTTCTTTATTG +
Preference number: 4 (lower is better)
Translates to: ASVDFCNCEGEGGILEATPSVPA*APRSLL
Trigger: CAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGG...TGTTGCTTCCAGGATCCCTCCCTCCCCTTCACAGTTACAAAAGTCTACGGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp CCTAGCATGCAAGAGGCCCTGGGTCTGATTTCTAGCATCACACACAAAAGTGTTTGCTGCTATACTGCTTaGAGCAGTGTGGGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: PSMQEALGLISSITHKSVCCYTA*SSVGSR
Trigger: TCTGCTGCCCACACTGCTCCAAGCAGTATAGCAGCA...AACACTTTTGTGTGTGATGCTAGAAATCAGACCCAGGGCCTCTTGCATGCTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp ACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGAAACAATGTGTTGCACCTGGATaGCGTGCTGCGTGTAAGTCT +
Preference number: 4 (lower is better)
Translates to: TAFVGRTAAAQVSGFLKQCVAPG*RAACKS
Trigger: AGACTTACACGCAGCACGCCATCCAGGTGCAACACA...TTGTTTCAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp CTCCATCTAGAAGTTAACTTTCCCCTGAAAGAGCTGCATTCCATGGCAGAAATCGTTTCCTGTGGCAGCTaGGGAATTGGGATGGACGCT +
Preference number: 4 (lower is better)
Translates to: LHLEVNFPLKELHSMAEIVSCGS*GIGMDA
Trigger: AGCGTCCATCCCAATTCCTCAGCTGCCACAGGAAAC...GATTTCTGCCATGGAATGCAGCTCTTTCAGGGGAAAGTTAACTTCTAGATGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTACTGTGTGCAGAGGGCTaGACCTGGACTGCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVLCAEG*TWTAPE
Trigger: CTCTGGAGCAGTCCAGGTTCAGCCCTCTGCACACAG...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp ATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCATGGGGAAGGCAGCACCTGTTaGGCTGTGGCATCCTGTTGG +
Preference number: 4 (lower is better)
Translates to: MKSPISQETLPQYIQWHGEGSTC*AVASCW
Trigger: CCAACAGGATGCCACAGCTCAACAGGTGCTGCCTTC...CCCATGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp ACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGAAACAATGTAAACAGAGTCTGTaGAGCTTCCACCGGGTGGAT +
Preference number: 4 (lower is better)
Translates to: TAFVGRTAAAQVSGFLKQCKQSL*SFHRVD
Trigger: ATCCACCCGGTGGAAGCTGCACAGACTCTGTTTACA...TTGTTTCAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CCTAGCATGCAAGAGGCCCTGGGTCTGATTTCTAGCATCACACACAAAAGTGTTTCAGAATGTGGGCTTTaGGCTTGCTGGCGCTCTTAT +
Preference number: 4 (lower is better)
Translates to: PSMQEALGLISSITHKSVSECGL*ACWRSY
Trigger: ATAAGAGCGCCAGCAAGCGCAAAGCCCACATTCTGA...AACACTTTTGTGTGTGATGCTAGAAATCAGACCCAGGGCCTCTTGCATGCTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp TCGAAAGTACTAAAATACGCCCAATGCTGGGAACCAGAGTGCGAGGTGGGGGCTTTCTTTCGAATGTGTTaGACCATCTTGGTCTTGCTG +
Preference number: 4 (lower is better)
Translates to: SKVLKYAQCWEPECEVGAFFRMC*TILVLL
Trigger: CAGCAAGACCAAGATGGTGCAACACATTCGAAAGAA...AGCCCCCACCTCGCACTCTGGTTCCCAGCATTGGGCGTATTTTAGTACTTTCGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp CTCCATCTAGAAGTTAACTTTCCCCTGAAAGAGCTGCATTCCATGGCAGAAATCACTGCTTCCCGCAGGTaGAACACAGGAAGTCCTTGC +
Preference number: 4 (lower is better)
Translates to: LHLEVNFPLKELHSMAEITASRR*NTGSPC
Trigger: GCAAGGACTTCCTGTGTTCCACCTGCGGGAAGCAGT...GATTTCTGCCATGGAATGCAGCTCTTTCAGGGGAAAGTTAACTTCTAGATGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp TCCCGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAGATCGGGCTTTGCGCTTGCTaGCGCTCTTATAAACCTTAT +
Preference number: 4 (lower is better)
Translates to: SRCNECSLQCQCVWEGEIGLCAC*RSYKPY
Trigger: ATAAGGTTTATAAGAGCGCCAGCAAGCGCAAAGCCC...GATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp AGAAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAACTGCTGCAGCTGCTCTaGGCTGATAAACCGCCGATT +
Preference number: 4 (lower is better)
Translates to: RRGEIPCWLTLKRIQQIKLLQLL*ADKPPI
Trigger: AATCGGCGGTTTATCAGCTCAGAGCAGCTGCAGCAG...TTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp GAGGACATGCATGGGCTCTATGCATACACATATGTAAGAGATTTGAGCATCCGTGTAGGAGGCACCATCTaGTGTATACACCACCTGCTG +
Preference number: 4 (lower is better)
Translates to: EDMHGLYAYTYVRDLSIRVGGTI*CIHHLL
Trigger: CAGCAGGTGGTGTATACAGCAGATGGTGCCTCCTAC...ACGGATGCTCAAATCTCTTACATATGTGTATGCATAGAGCCCATGCATGTCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp CCTAGCATGCAAGAGGCCCTGGGTCTGATTTCTAGCATCACACACAAAAGTGTTGGCCAGTTCTTCTCTTaGTCTCGAAGAACTTTCCTC +
Preference number: 4 (lower is better)
Translates to: PSMQEALGLISSITHKSVGQFFS*SRRTFL
Trigger: GAGGAAAGTTCTTCGAGAGCAAGAGAAGAACTGGCC...AACACTTTTGTGTGTGATGCTAGAAATCAGACCCAGGGCCTCTTGCATGCTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp ATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCATGGGAGGTTCTGTTCTAGGTaGTTCTGGGCTGGGCGCACA +
Preference number: 4 (lower is better)
Translates to: MKSPISQETLPQYIQWHGRFCSR*FWAGRT
Trigger: TGTGCGCCCAGCCCAGAACCACCTAGAACAGAACCT...CCCATGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR TCA 90 bp GCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTTTTTGTCAGCTGGGGTGGCGCTaGTCACAGCTGTCGTCAGTG +
Preference number: 4 (lower is better)
Translates to: AFRDWSQHFMLKLLLPFCQLGWR*SQLSSV
Trigger: CACTGACGACAGCTGTGATCAGCGCCACCCCAGCTG...ACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CCTAGCATGCAAGAGGCCCTGGGTCTGATTTCTAGCATCACACACAAAAGTGTTCAGAGTAGCTGGTTCTaGCTCATCAAACTGTTCCTT +
Preference number: 4 (lower is better)
Translates to: PSMQEALGLISSITHKSVQSSWF*LIKLFL
Trigger: AAGGAACAGTTTGATGAGGCAGAACCAGCTACTCTG...AACACTTTTGTGTGTGATGCTAGAAATCAGACCCAGGGCCTCTTGCATGCTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp AGGGCAAATATAAATTACAAAAACTCCAACTGTACCTTTGAGATGGTCTACCGCAGTGATTTACCAGCATaGCTCGCCGCCGGAAGCCCA +
Preference number: 4 (lower is better)
Translates to: RANINYKNSNCTFEMVYRSDLPA*LAAGSP
Trigger: TGGGCTTCCGGCGGCGAGGCATGCTGGTAAATCACT...GCGGTAGACCATCTCAAAGGTACAGTTGGAGTTTTTGTAATTTATATTTGCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGACAGGGAGTCACTGTGTaGAGAGGGCTGAACCTGGAC +
Preference number: 4 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRQGVTV*RGLNLD
Trigger: GTCCAGGTTCAGCCCTCTGCACACAGTGACTCCCTG...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp AAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATTCAAACGGATAAATTTTaGAGGACGCCCGGGTCGCCG +
Preference number: 4 (lower is better)
Translates to: KRGDTLLAHIKENPTDQIQTDKF*RTPGSP
Trigger: CGGCGACCCGGGCGTCCTCCAAAATTTATCCGTTTG...AATTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp GAGGTCGCGAGGTGTTTGGAGCTTCAGATTCCAAAATTGTGGTGTGAGCTCTGGCACCTGGATAAAATCTaGGAACCGTTTCTTACAAGT +
Preference number: 4 (lower is better)
Translates to: EVARCLELQIPKLWCELWHLDKI*EPFLTS
Trigger: ACTTGTAAGAAACGGTTCCCAGATTTTATCCAGGTG...CCAGAGCTCACACCACAATTTTGGAATCTGAAGCTCCAAACACCTCGCGACCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTATGCGGTCAGCTTTCTTaGCCTCCCTCTCGGGGTTAT +
Preference number: 4 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVCGQLS*PPSRGY
Trigger: ATAACCCCGAGAGGGAGGCCAAGAAAGCTGACCGCA...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp AAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATTCGGGAGCTCAGCTCCTaGGTGGTTCTTCAGAATGTG +
Preference number: 4 (lower is better)
Translates to: KRGDTLLAHIKENPTDQIRELSS*VVLQNV
Trigger: CACATTCTGAAGAACCACCCAGGAGCTGAGCTCCCG...AATTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGACAGGAGGGGTGGCAATaGTACCCGTCAGCTGAGTGT +
Preference number: 4 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRQEGWQ*YPSAEC
Trigger: ACACTCAGCTGACGGGTACCATTGCCACCCCTCCTG...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp CATGGGCTCTATGCATACACATATGTAAGAGATTTGAGCATCCGTAGACTTTTGGCAGTGCTCTGTTCATaGTCTGCAGACGTTGGCCAC +
Preference number: 4 (lower is better)
Translates to: HGLYAYTYVRDLSIRRLLAVLCS*SADVGH
Trigger: GTGGCCAACGTCTGCAGACCATGAACAGAGCACTGC...CAAAAGTCTACGGATGCTCAAATCTCTTACATATGTGTATGCATAGAGCCCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
3UTR CAA 72 bp CATAGCTTGGATATCAGAAGTCCAGTGGCCACGGACTaGGTACATCCTGTCTCCACCTTTGGTATGAACATA +
Preference number: 4 (lower is better)
Translates to: HSLDIRSPVATD*VHPVSTFGMNI
Trigger: TATGTTCATACCAAAGGTGGAGACAGGATGTACCAAGTCCGTGGCCACTGGACTTCTGATATCCAAGCTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CAA 72 bp GATCACCATAGAAACCTTGGCCACATGTTTCCCAGATaGGGCTGTCAGAGGGATTATACTCTGCCATCTCTT +
Preference number: 4 (lower is better)
Translates to: DHHRNLGHMFPR*GCQRDYTLPSL
Trigger: AAGAGATGGCAGAGTATAATCCCTCTGACAGCCCAATCTGGGAAACATGTGGCCAAGGTTTCTATGGTGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGAATGGTACCCGTCAGCTaGGTGTGGGTGCTCAGCATA +
Preference number: 4 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRMVPVS*VWVLSI
Trigger: TATGCTGAGCACCCACACTCAGCTGACGGGTACCAT...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTATGCAACTGTATGTGCTaGGGCTGCTGCAGACCAGAT +
Preference number: 4 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVCNCMC*GCCRPD
Trigger: ATCTGGTCTGCAGCAGCCTCAGCACATACAGTTGCA...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp AGTCTTGCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTACGAGGCTCTCCTCTTaGTGTGGCTGCAGGTGCAAG +
Preference number: 4 (lower is better)
Translates to: SLAFRDWSQHFMLKLLLPTRLSS*CGCRCK
Trigger: CTTGCACCTGCAGCCACAGCAAGAGGAGAGCCTCGT...AGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp AGGGCAAATATAAATTACAAAAACTCCAACTGTACCTTTGAGATGGTCTACCGCAACACAGGAAGTCCTTaGGGTCGGAATGCCGGAGCA +
Preference number: 4 (lower is better)
Translates to: RANINYKNSNCTFEMVYRNTGSP*GRNAGA
Trigger: TGCTCCGGCATTCCGACCGCAAGGACTTCCTGTGTT...GCGGTAGACCATCTCAAAGGTACAGTTGGAGTTTTTGTAATTTATATTTGCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp AGAAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATGTGGGCTTTGCGCTTaGTGGCGCTCTTATAAACCT +
Preference number: 4 (lower is better)
Translates to: RRGEIPCWLTLKRIQQIKCGLCA*WRSYKP
Trigger: AGGTTTATAAGAGCGCCAGCAAGCGCAAAGCCCACA...TTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CATGGGCTCTATGCATACACATATGTAAGAGATTTGAGCATCCGTAGACTTTTGGCTCTGTTCATGGTCTaGAGACGTTGGCCACACATG +
Preference number: 4 (lower is better)
Translates to: HGLYAYTYVRDLSIRRLLALFMV*RRWPHM
Trigger: CATGTGTGGCCAACGTCTGCAGACCATGAACAGAGC...CAAAAGTCTACGGATGCTCAAATCTCTTACATATGTGTATGCATAGAGCCCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp TGGATAAGACCCTGGGATAGTTACAACACTACAGGCTTTTTGGAAAACCCGAGAAACAAAGTGCACCTGTaGAGTGCTCTGTTCATGGTC +
Preference number: 4 (lower is better)
Translates to: WIRPWDSYNTTGFLENPRNKVHL*SALFMV
Trigger: GACCATGAACAGAGCACTGCACAGGTGCACTTTGTT...TCTCGGGTTTTCCAAAAAGCCTGTAGTGTTGTAACTATCCCAGGGTCTTATCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp AAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATTCGAACTGGGTGCGCTTaGGAATCCGTCTTTTGGAGA +
Preference number: 4 (lower is better)
Translates to: KRGDTLLAHIKENPTDQIRTGCA*ESVFWR
Trigger: TCTCCAAAAGACGGATTCCCAAGCGCACCCAGTTCG...AATTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTATGTTCTAGGTGGTTCTaGGCTGGGCGCACAAACATC +
Preference number: 4 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVCSRWF*AGRTNI
Trigger: GATGTTTGTGCGCCCAGCCCAGAACCACCTAGAACA...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp AGGGCAAATATAAATTACAAAAACTCCAACTGTACCTTTGAGATGGTCTACCGCAGGTTCTGTTCTAGGTaGTTCTGGGCTGGGCGCACA +
Preference number: 4 (lower is better)
Translates to: RANINYKNSNCTFEMVYRRFCSR*FWAGRT
Trigger: TGTGCGCCCAGCCCAGAACCACCTAGAACAGAACCT...GCGGTAGACCATCTCAAAGGTACAGTTGGAGTTTTTGTAATTTATATTTGCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTATGGCAGCTGAGGAATTaGGATGGACGCTTGTTCTGG +
Preference number: 4 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVWQLRN*DGRLFW
Trigger: CCAGAACAAGCGTCCATCCCAATTCCTCAGCTGCCA...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp CTCCATCTAGAAGTTAACTTTCCCCTGAAAGAGCTGCATTCCATGGCAGAAATCTGGAAGCGCAAGTGTTaGTCCAGTTTGTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: LHLEVNFPLKELHSMAEIWKRKC*SSLSFS
Trigger: GGAAAAGGACAAACTGGACCAACACTTGCGCTTCCA...GATTTCTGCCATGGAATGCAGCTCTTTCAGGGGAAAGTTAACTTCTAGATGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp AAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATTTGGTTCTTCAGAATGTaGGCTTTGCGCTTGCTGGCG +
Preference number: 4 (lower is better)
Translates to: KRGDTLLAHIKENPTDQIWFFRM*ALRLLA
Trigger: CGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCA...AATTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp CTATCACACAAACAACTGCTCCTCTCAGAACTAACTGCATTAATATTCCTTCACGTGGAAGAACTGCCTTaGATATGGGAGGGGCTGAGC +
Preference number: 4 (lower is better)
Translates to: LSHKQLLLSELTALIFLHVEELP*IWEGLS
Trigger: GCTCAGCCCCTCCCATATCCAAGGCAGTTCTTCCAC...GTGAAGGAATATTAATGCAGTTAGTTCTGAGAGGAGCAGTTGTTTGTGTGATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGAGAATTCTGCTGCTGCTaGAGAGCCTGCCCTTGTGTG +
Preference number: 4 (lower is better)
Translates to: MGQLQLLIRYFLALHLLREFCCC*RACPCV
Trigger: CACACAAGGGCAGGCTCTCCAGCAGCAGCAGAATTC...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp ACTCCCACGCCCAGCTCCAGCAGGGCAAATATAAATTACAAAAACTCCAACTGTAGGAGTTCCAAGCATTaGGGAGGTATGTGTGTTGTA +
Preference number: 4 (lower is better)
Translates to: TPTPSSSRANINYKNSNCRSSKH*GGMCVV
Trigger: TACAACACACATACCTCCCCAATGCTTGGAACTCCT...ACAGTTGGAGTTTTTGTAATTTATATTTGCCCTGCTGGAGCTGGGCGTGGGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp TTGTTAAAATTACTGAAAACTCAATGCATGAGATATAGCGGTCCTGACCTAATCGTTGGCTGGGGCCTGTaGAGTCCAGGGAGTCACTGT +
Preference number: 4 (lower is better)
Translates to: LLKLLKTQCMRYSGPDLIVGWGL*SPGSHC
Trigger: ACAGTGACTCCCTGGACTCCACAGGCCCCAGCCAAC...GATTAGGTCAGGACCGCTATATCTCATGCATTGAGTTTTCAGTAATTTTAACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp GAGGACATGCATGGGCTCTATGCATACACATATGTAAGAGATTTGAGCATCCGTCTTTTGCATCTAGTCTaGCAATGGGGTTCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: EDMHGLYAYTYVRDLSIRLLHLV*QWGSAE
Trigger: CTCTGCAGAACCCCATTGCCAGACTAGATGCAAAAG...ACGGATGCTCAAATCTCTTACATATGTGTATGCATAGAGCCCATGCATGTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR TCA 90 bp AGAAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAAGACGCTTGTTCTGGCTaGTCTAGTCCATTCAGAGTA +
Preference number: 4 (lower is better)
Translates to: RRGEIPCWLTLKRIQQIKDACSG*SSPFRV
Trigger: TACTCTGAATGGACTAGATCAGCCAGAACAAGCGTC...TTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CCCAATAAGCTAGCTGCCTTTGTTAAAATTACTGAAAACTCAATGCATGAGATAGGATGCAAGGGGCCATaGTTCGGGCACACGGAAGAA +
Preference number: 4 (lower is better)
Translates to: PNKLAAFVKITENSMHEIGCKGP*FGHTEE
Trigger: TTCTTCCGTGTGCCCGAAGCATGGCCCCTTGCATCC...TATCTCATGCATTGAGTTTTCAGTAATTTTAACAAAGGCAGCTAGCTTATTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp ACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGAAACAATGGAAACTTCGCACGTaGTTTTTCACCTGGATAAAA +
Preference number: 4 (lower is better)
Translates to: TAFVGRTAAAQVSGFLKQWKLRT*FFTWIK
Trigger: TTTTATCCAGGTGAAAAAGCACGTGCGAAGTTTCCA...TTGTTTCAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp TTGTTAAAATTACTGAAAACTCAATGCATGAGATATAGCGGTCCTGACCTAATCTCCTTGCGGTCGGAATaGCGGAGCATGTGCAGTCTC +
Preference number: 4 (lower is better)
Translates to: LLKLLKTQCMRYSGPDLISLRSE*RSMCSL
Trigger: GAGACTGCACATGCTCCGGCATTCCGACCGCAAGGA...GATTAGGTCAGGACCGCTATATCTCATGCATTGAGTTTTCAGTAATTTTAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGAATGTACTGTGTAGTCTaGTGTTGGCTGGGGCCTGTG +
Preference number: 4 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRMYCVV*CWLGPV
Trigger: CACAGGCCCCAGCCAACAGCAGACTACACAGTACAT...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp ATCACCATCTGTACTGAAGCCCAAACATTAGGCATGATGACTATTTACATAGCAAGTGCACCTGTGCAGTaGTCTGTTCATGGTCTGCAG +
Preference number: 4 (lower is better)
Translates to: ITICTEAQTLGMMTIYIASAPVQ*SVHGLQ
Trigger: CTGCAGACCATGAACAGAGCACTGCACAGGTGCACT...TGCTATGTAAATAGTCATCATGCCTAATGTTTGGGCTTCAGTACAGATGGTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp AGTCTTGCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTCATTTCGGATGCGTTTaGCCCTGCGCATGTCATCGG +
Preference number: 4 (lower is better)
Translates to: SLAFRDWSQHFMLKLLLPHFGCV*PCACHR
Trigger: CCGATGACATGCGCAGGGCCAAACGCATCCGAAATG...AGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp GCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTTTTTGTGAGTGCAGCTTCATGTaGCTCTCCAAGGAGGCGCTG +
Preference number: 4 (lower is better)
Translates to: AFRDWSQHFMLKLLLPFCECSFM*LSKEAL
Trigger: CAGCGCCTCCTTGGAGAGCCACATGAAGCTGCACTC...ACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp CTTTATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCAATGGTCTGCAGACGTTaGCCACACATGAGCGCTTTC +
Preference number: 4 (lower is better)
Translates to: LYEISHFTRNSSSVHTVAMVCRR*PHMSAF
Trigger: GAAAGCGCTCATGTGTGGCCAACGTCTGCAGACCAT...TGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CCA 90 bp CATGGGCTCTATGCATACACATATGTAAGAGATTTGAGCATCCGTAGACTTTTGCATGCACACTCTCAATaGAAGGCAGCACCTGTTGAG +
Preference number: 4 (lower is better)
Translates to: HGLYAYTYVRDLSIRRLLHAHSQ*KAAPVE
Trigger: CTCAACAGGTGCTGCCTTCCATTGAGAGTGTGCATG...CAAAAGTCTACGGATGCTCAAATCTCTTACATATGTGTATGCATAGAGCCCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR TCA 90 bp CTATCACACAAACAACTGCTCCTCTCAGAACTAACTGCATTAATATTCCTTCACAGTTCTGTCATCGCCTaGGTTAGCAGGTCTGTTGTC +
Preference number: 4 (lower is better)
Translates to: LSHKQLLLSELTALIFLHSSVIA*VSRSVV
Trigger: GACAACAGACCTGCTAACTCAGGCGATGACAGAACT...GTGAAGGAATATTAATGCAGTTAGTTCTGAGAGGAGCAGTTGTTTGTGTGATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR TCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGACTGCAGACCAGATGCTaGCTGAGACACAGGGATATA +
Preference number: 4 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRLQTRC*LRHRDI
Trigger: TATATCCCTGTGTCTCAGTCAGCATCTGGTCTGCAG...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CCCAATAAGCTAGCTGCCTTTGTTAAAATTACTGAAAACTCAATGCATGAGATAGTCTTCTGGTCCGAGTaGAGCTTCATGTGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: PNKLAAFVKITENSMHEIVFWSE*SFMWLS
Trigger: GGAGAGCCACATGAAGCTGCACTCGGACCAGAAGAC...TATCTCATGCATTGAGTTTTCAGTAATTTTAACAAAGGCAGCTAGCTTATTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTAGGGTTATGCATCCTTTaGATGTGCTCTCGGAGTTTG +
Preference number: 4 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVGLCIL*MCSRSL
Trigger: CAAACTCCGAGAGCACATGCAAAGGATGCATAACCC...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTACCTTCAGTTCCTGCTTaGGCTCCACGTTCTTTATTG +
Preference number: 4 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVPSVPA*APRSLL
Trigger: CAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGG...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp TGGATAAGACCCTGGGATAGTTACAACACTACAGGCTTTTTGGAAAACCCGAGAACGTGCTTTTTCACCTaGATAAAATCTGGGAACCGT +
Preference number: 4 (lower is better)
Translates to: WIRPWDSYNTTGFLENPRTCFFT*IKSGNR
Trigger: ACGGTTCCCAGATTTTATCCAGGTGAAAAAGCACGT...TCTCGGGTTTTCCAAAAAGCCTGTAGTGTTGTAACTATCCCAGGGTCTTATCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp TTGTTAAAATTACTGAAAACTCAATGCATGAGATATAGCGGTCCTGACCTAATCGTCGTCAGTGGTGTGTaGATGGTGTTGGGAAGCTGG +
Preference number: 4 (lower is better)
Translates to: LLKLLKTQCMRYSGPDLIVVSGV*MVLGSW
Trigger: CCAGCTTCCCAACACCATCCACACACCACTGACGAC...GATTAGGTCAGGACCGCTATATCTCATGCATTGAGTTTTCAGTAATTTTAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGAGTCACTGCTTTCACTTaGCCAGAAGTAACAGGGGTT +
Preference number: 4 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRVTAFT*PEVTGV
Trigger: AACCCCTGTTACTTCTGGGCAAGTGAAAGCAGTGAC...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp CTATCACACAAACAACTGCTCCTCTCAGAACTAACTGCATTAATATTCCTTCACTGTGGATGTGATCCGTaGTTTGAAGGTCTTGGAACG +
Preference number: 4 (lower is better)
Translates to: LSHKQLLLSELTALIFLHCGCDP*FEGLGT
Trigger: CGTTCCAAGACCTTCAAACCACGGATCACATCCACA...GTGAAGGAATATTAATGCAGTTAGTTCTGAGAGGAGCAGTTGTTTGTGTGATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp GCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTTTTTGTAGCTCAGCTCCTGGGTaGTTCTTCAGAATGTGGGCT +
Preference number: 4 (lower is better)
Translates to: AFRDWSQHFMLKLLLPFCSSAPG*FFRMWA
Trigger: AGCCCACATTCTGAAGAACCACCCAGGAGCTGAGCT...ACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGACCACAGTCTCTCCAGTaGCACTATCTGTCGTTAAGA +
Preference number: 4 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRPQSLQ*HYLSLR
Trigger: TCTTAACGACAGATAGTGCCACTGGAGAGACTGTGG...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGAGGTTCTGTTGAGCTGTaGCATCCTGTTGGACATAAG +
Preference number: 4 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRGSVEL*HPVGHK
Trigger: CTTATGTCCAACAGGATGCCACAGCTCAACAGAACC...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTACTTTTGCATCTAGTCTaGCAATGGGGTTCTGTTGAG +
Preference number: 4 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVLLHLV*QWGSVE
Trigger: CTCAACAGAACCCCATTGCCAGACTAGATGCAAAAG...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp AAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATTAACCACAGGTCTTCATaGAAATCCCTGTCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: KRGDTLLAHIKENPTDQINHRSS*KSLSFL
Trigger: CAGAAAAGACAGGGATTTGCATGAAGACCTGTGGTT...AATTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp TTGTTAAAATTACTGAAAACTCAATGCATGAGATATAGCGGTCCTGACCTAATCCACACCTTCAGTTCCTaGTTGGGCTCCACGTTCTTT +
Preference number: 4 (lower is better)
Translates to: LLKLLKTQCMRYSGPDLIHTFSS*LGSTFF
Trigger: AAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTGTG...GATTAGGTCAGGACCGCTATATCTCATGCATTGAGTTTTCAGTAATTTTAACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CTATCACACAAACAACTGCTCCTCTCAGAACTAACTGCATTAATATTCCTTCACGAATTAAGATGCTGCTaGAGCTGCTCTGAGCTGATA +
Preference number: 4 (lower is better)
Translates to: LSHKQLLLSELTALIFLHELRCC*SCSELI
Trigger: TATCAGCTCAGAGCAGCTGCAGCAGCATCTTAATTC...GTGAAGGAATATTAATGCAGTTAGTTCTGAGAGGAGCAGTTGTTTGTGTGATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR GCA 90 bp CTTTATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCAAACCACAGGTCTTCATaGAAATCCCTGTCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: LYEISHFTRNSSSVHTVANHRSS*KSLSFL
Trigger: CAGAAAAGACAGGGATTTGCATGAAGACCTGTGGTT...TGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCATAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR GCA 90 bp GCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTTTTTGTTCCTTTGTAGGGAAATaGAGCAAGTCCTGTGTTCCG +
Preference number: 4 (lower is better)
Translates to: AFRDWSQHFMLKLLLPFCSFVGK*SKSCVP
Trigger: CGGAACACAGGACTTGCTGCATTTCCCTACAAAGGA...ACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp CCCAATAAGCTAGCTGCCTTTGTTAAAATTACTGAAAACTCAATGCATGAGATAATAAGCTACCTGGGCTaGGTCTGTAAACAGAGTCTG +
Preference number: 4 (lower is better)
Translates to: PNKLAAFVKITENSMHEIISYLG*VCKQSL
Trigger: CAGACTCTGTTTACAGACCCAGCCCAGGTAGCTTAT...TATCTCATGCATTGAGTTTTCAGTAATTTTAACAAAGGCAGCTAGCTTATTGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CCA 90 bp GCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTTTTTGTAAGCTGGGCATACTCTaGGTGTTTCTTTCGAATGTG +
Preference number: 4 (lower is better)
Translates to: AFRDWSQHFMLKLLLPFCKLGIL*VFLSNV
Trigger: CACATTCGAAAGAAACACCCAGAGTATGCCCAGCTT...ACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CAA 72 bp AGTCTTGCATTTCGTGACTGGAGTCAACATTTCATGTaGAAATTACTGTTACCTTTTTGTTGGCAAAGATAC +
Preference number: 4 (lower is better)
Translates to: SLAFRDWSQHFM*KLLLPFCWQRY
Trigger: GTATCTTTGCCAACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
3UTR CAA 72 bp GAGTCAACATTTCATGTTGAAATTACTGTTACCTTTTaGTTGGCAAAGATACAGAGTCCATTTTCAGTTTCC +
Preference number: 4 (lower is better)
Translates to: ESTFHVEITVTF*LAKIQSPFSVS
Trigger: GGAAACTGAAAATGGACTCTGTATCTTTGCCAACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS TCA 90 bp GCCCAGCTACCTGGGATGCTGACGGAGCCGCAGGGGCGGGCTCTGTaGCCTGGATGTGTTGCACCTGGATGGCGTGCTGCGTGTAAGTCT +
Preference number: 5 (lower is better)
Translates to: AQLPGMLTEPQGRAL*PGCVAPGWRAACKS
Trigger: AGACTTACACGCAGCACGCCATCCAGGTGCAACACATCCAGGTCACAGAGCCCGCCCCTGCGGCTCCGTCAGCATCCCAGGTAGCTGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074510.4
ENSMUST00000215847.2
CDS TCA 90 bp CAGTGTGGGCAGCAGACAGGAGGGGTGGCAATGGTACCCGTCAGCTaGGTGTGGGTGCTCAGCATAGGGTCAGGCTCTCCAGGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: QCGQQTGGVAMVPVS*VWVLSIGSGSPGPA
Trigger: TGCTGGCCCTGGAGAGCCTGACCCTATGCTGAGCACCCACACTCAGCTGACGGGTACCATTGCCACCCCTCCTGTCTGCTGCCCACACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp TCCGAGGAACCTATCTATGTAGAGGACCAGAGGCAGGCTCGCTCTTaGCCGGGTGAGCACAGGCCGGTTAGGGATGGGATGCAAGGGGCC +
Preference number: 5 (lower is better)
Translates to: SEEPIYVEDQRQARS*PGEHRPVRDGMQGA
Trigger: GGCCCCTTGCATCCCATCCCTAACCGGCCTGTGCTCACCCGGGCAAGAGCGAGCCTGCCTCTGGTCCTCTACATAGATAGGTTCCTCGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp CGGATGCGTTTGGCCCTGCGCATGTCATCGGCTGTCAGAGTGGTCTaGGTAGGCACGAGGCTCTCCTCTTGCTGTGGCTGCAGGTGCAAG +
Preference number: 5 (lower is better)
Translates to: RMRLALRMSSAVRVV*VGTRLSSCCGCRCK
Trigger: CTTGCACCTGCAGCCACAGCAAGAGGAGAGCCTCGTGCCTACCCAGACCACTCTGACAGCCGATGACATGCGCAGGGCCAAACGCATCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp AACTGCTTCCCGCAGGTGGAACACAGGAAGTCCTTGCGGTCGGAATaGCGGAGCATGTGCAGTCTCAGCTTGTCGGGGCGACAGAAGGCC +
Preference number: 5 (lower is better)
Translates to: NCFPQVEHRKSLRSE*RSMCSLSLSGRQKA
Trigger: GGCCTTCTGTCGCCCCGACAAGCTGAGACTGCACATGCTCCGGCATTCCGACCGCAAGGACTTCCTGTGTTCCACCTGCGGGAAGCAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS TCA 90 bp GTAGGCACGAGGCTCTCCTCTTGCTGTGGCTGCAGGTGCAAGGTGTaGGTTTCTGGTTCCTGCTCCAGAGAAGGCGGGGTTTCCTGTGGC +
Preference number: 5 (lower is better)
Translates to: VGTRLSSCCGCRCKV*VSGSCSREGGVSCG
Trigger: GCCACAGGAAACCCCGCCTTCTCTGGAGCAGGAACCAGAAACTCACACCTTGCACCTGCAGCCACAGCAAGAGGAGAGCCTCGTGCCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp GCCCGGGTGAGCACAGGCCGGTTAGGGATGGGATGCAAGGGGCCATaGTTCGGGCACACGGAAGAATGTGCATTGTTACACTCCTCACAC +
Preference number: 5 (lower is better)
Translates to: ARVSTGRLGMGCKGP*FGHTEECALLHSSH
Trigger: GTGTGAGGAGTGTAACAATGCACATTCTTCCGTGTGCCCGAAGCATGGCCCCTTGCATCCCATCCCTAACCGGCCTGTGCTCACCCGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp AGGCTCGCTCTTGCCCGGGTGAGCACAGGCCGGTTAGGGATGGGATaGAAGGGGCCATGCTTCGGGCACACGGAAGAATGTGCATTGTTA +
Preference number: 5 (lower is better)
Translates to: RLALARVSTGRLGMG*KGPCFGHTEECALL
Trigger: TAACAATGCACATTCTTCCGTGTGCCCGAAGCATGGCCCCTTGCATCCCATCCCTAACCGGCCTGTGCTCACCCGGGCAAGAGCGAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp GAGGCTCTCCTCTTGCTGTGGCTGCAGGTGCAAGGTGTGAGTTTCTaGTTCCTGCTCCAGAGAAGGCGGGGTTTCCTGTGGCAGCTGAGG +
Preference number: 5 (lower is better)
Translates to: EALLLLWLQVQGVSF*FLLQRRRGFLWQLR
Trigger: CCTCAGCTGCCACAGGAAACCCCGCCTTCTCTGGAGCAGGAACCAGAAACTCACACCTTGCACCTGCAGCCACAGCAAGAGGAGAGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp CAGGTCAACGGGCAGTTCCCCTCCCGCCCATGGAAGCGCAAGTGTTaGTCCAGTTTGTCCTTTTCCCGGAAGGCCTTCCCACACTGCAGA +
Preference number: 5 (lower is better)
Translates to: QVNGQFPSRPWKRKC*SSLSFSRKAFPHCR
Trigger: TCTGCAGTGTGGGAAGGCCTTCCGGGAAAAGGACAAACTGGACCAACACTTGCGCTTCCATGGGCGGGAGGGGAACTGCCCGTTGACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp GTCGTGCAGCTGGCCAACGTCCACTGTGGACTGCTGAGACTGATGTaGGGAAGTGGCCGGAGCCACCTGCACCACTTGCAACTGTATGTG +
Preference number: 5 (lower is better)
Translates to: VVQLANVHCGLLRLM*GSGRSHLHHLQLYV
Trigger: CACATACAGTTGCAAGTGGTGCAGGTGGCTCCGGCCACTTCCCCACATCAGTCTCAGCAGTCCACAGTGGACGTTGGCCAGCTGCACGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS-3UTR CAA 90 bp TTTGTCTTCCAGGGAGTCTGCTTGTGGACCGTGAGGCCAGATCGGCCTGGGGACGGGCGACAGAAGGCCTaGTCACACTCTGTACACTGG +
Preference number: 5 (lower is better)
Translates to: FVFQGVCLWTVRPDRPGDGRQKA*SHSVHW
Trigger: CCAGTGTACAGAGTGTGACAAGGCCTTCTGTCGCCC...GTCCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTGGAAGACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS TCA 90 bp TTCCACCGGGTGGATGTAGACCAGTGTGTGCTCTGGACCGTCCACTaGCGTGTAGGAGGCACCATCTGCTGTATACACCACCTGCTGGGG +
Preference number: 5 (lower is better)
Translates to: FHRVDVDQCVLWTVH*RVGGTICCIHHLLG
Trigger: CCCCAGCAGGTGGTGTATACAGCAGATGGTGCCTCCTACACGTCAGTGGACGGTCCAGAGCACACACTGGTCTACATCCACCCGGTGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp CAGGTGGAACACAGGAAGTCCTTGCGGTCGGAATGCCGGAGCATGTaGAGTCTCAGCTTGTCGGGGCGACAGAAGGCCTTGTCACACTCT +
Preference number: 5 (lower is better)
Translates to: QVEHRKSLRSECRSM*SLSLSGRQKALSHS
Trigger: AGAGTGTGACAAGGCCTTCTGTCGCCCCGACAAGCTGAGACTGCACATGCTCCGGCATTCCGACCGCAAGGACTTCCTGTGTTCCACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp GCCAGCAGGACGCAGTTTCCGAATACTTGGCGGGAGCTCAGCTCCTaGGTGGTTCTTCAGAATGTGGGCTTTGCGCTTGCTGGCGCTCTT +
Preference number: 5 (lower is better)
Translates to: ASRTQFPNTWRELSS*VVLQNVGFALAGAL
Trigger: AAGAGCGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCACCCAGGAGCTGAGCTCCCGCCAAGTATTCGGAAACTGCGTCCTGCTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp AGGGTCAGGCTCTCCAGGGCCAGCAGGACGCAGTTTCCGAATACTTaGCGGGAGCTCAGCTCCTGGGTGGTTCTTCAGAATGTGGGCTTT +
Preference number: 5 (lower is better)
Translates to: RVRLSRASRTQFPNT*RELSSWVVLQNVGF
Trigger: AAAGCCCACATTCTGAAGAACCACCCAGGAGCTGAGCTCCCGCCAAGTATTCGGAAACTGCGTCCTGCTGGCCCTGGAGAGCCTGACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS-3UTR CAA 90 bp TTTGTCTTCCAGGGAGTCTGCTTGTGGACCGTGAGGCCAGATCGGCCTGGGGACCATGGTCTGCAGACGTaGGCCACACATGAGCGCTTT +
Preference number: 5 (lower is better)
Translates to: FVFQGVCLWTVRPDRPGDHGLQT*ATHERF
Trigger: AAAGCGCTCATGTGTGGCCAACGTCTGCAGACCATG...GTCCCCAGGCCGATCTGGCCTCACGGTCCACAAGCAGACTCCCTGGAAGACAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS GCA 90 bp CCCCCGTTGCCATTGGTGGTGGTTGTGATGATGTACTGTGTAGTCTaGTGTTGGCTGGGGCCTGTGGAGTCCAGGGAGTCACTGTGTGCA +
Preference number: 5 (lower is better)
Translates to: PPLPLVVVVMMYCVV*CWLGPVESRESLCA
Trigger: TGCACACAGTGACTCCCTGGACTCCACAGGCCCCAGCCAACAGCAGACTACACAGTACATCATCACAACCACCACCAATGGCAACGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp GCCCCTCCACTGGGCCGAACTGGGTGCGCTTGGGAATCCGTCTTTTaGAGAACACTCCTCCGAGGAACCTATCTATGTAGAGGACCAGAG +
Preference number: 5 (lower is better)
Translates to: APPLGRTGCAWESVF*RTLLRGTYLCRGPE
Trigger: CTCTGGTCCTCTACATAGATAGGTTCCTCGGAGGAGTGTTCTCCAAAAGACGGATTCCCAAGCGCACCCAGTTCGGCCCAGTGGAGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS TCA 90 bp ACCACCTGCTGGGGTGGACGGACTTGGTCGTCAGTGTATACAATCTaGGCCACAGTTCCGGCATCCGGAACAAAGTGCACCTGGGGAAAG +
Preference number: 5 (lower is better)
Translates to: TTCWGGRTWSSVYTI*ATVPASGTKCTWGK
Trigger: CTTTCCCCAGGTGCACTTTGTTCCGGATGCCGGAACTGTGGCTCAGATTGTATACACTGACGACCAAGTCCGTCCACCCCAGCAGGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074510.4
CDS TCA 90 bp ACCACCTGCTGGGGTGGACGGACTTGGTCGTCAGTGTATACAATCTaGGCCACAGTTCCGGCATCCGGAACAAAGTGCACCTGTGCAGTG +
Preference number: 5 (lower is better)
Translates to: TTCWGGRTWSSVYTI*ATVPASGTKCTCAV
Trigger: CACTGCACAGGTGCACTTTGTTCCGGATGCCGGAACTGTGGCTCAGATTGTATACACTGACGACCAAGTCCGTCCACCCCAGCAGGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp TGTGGAGTCCAGGGAGTCACTGTGTGCAGAGGGCTGAACCTGGACTaGTCCAGAGAGAGCAGAGGCTTGCTTTTCCTCCAATTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: CGVQGVTVCRGLNLD*SRESRGLLFLQFWL
Trigger: CAGCCAGAATTGGAGGAAAAGCAAGCCTCTGCTCTCTCTGGAGCAGTCCAGGTTCAGCCCTCTGCACACAGTGACTCCCTGGACTCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp TTGTTACAGAGATCACAGGTCAACGGGCAGTTCCCCTCCCGCCCATaGAAGCGCAAGTGTTGGTCCAGTTTGTCCTTTTCCCGGAAGGCC +
Preference number: 5 (lower is better)
Translates to: LLQRSQVNGQFPSRP*KRKCWSSLSFSRKA
Trigger: GGCCTTCCGGGAAAAGGACAAACTGGACCAACACTTGCGCTTCCATGGGCGGGAGGGGAACTGCCCGTTGACCTGTGATCTCTGTAACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp TTGCCATTGGTGGTGGTTGTGATGATGTACTGTGTAGTCTGCTGTTaGCTGGGGCCTGTGGAGTCCAGGGAGTCACTGTGTGCAGAGGGC +
Preference number: 5 (lower is better)
Translates to: LPLVVVVMMYCVVCC*LGPVESRESLCAEG
Trigger: GCCCTCTGCACACAGTGACTCCCTGGACTCCACAGGCCCCAGCCAACAGCAGACTACACAGTACATCATCACAACCACCACCAATGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS-3UTR CAA 90 bp CTGGGGACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGATGCGGTCAGCTTTCTaGGCCTCCCTCTCGGGGTTA +
Preference number: 5 (lower is better)
Translates to: LGTAFVGRTAAAQVSGFLMRSAF*ASLSGL
Trigger: TAACCCCGAGAGGGAGGCCAAGAAAGCTGACCGCAT...CAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGTCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS TCA 90 bp TCTCTCCAGTGGCACTATCTGTCGTTAAGACAGCTGGGGTGGCGCTaGTCACAGCTGTCGTCAGTGGTGTGTGGATGGTGTTGGGAAGCT +
Preference number: 5 (lower is better)
Translates to: SLQWHYLSLRQLGWR*SQLSSVVCGWCWEA
Trigger: AGCTTCCCAACACCATCCACACACCACTGACGACAGCTGTGATCAGCGCCACCCCAGCTGTCTTAACGACAGATAGTGCCACTGGAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp AAGACAGCTGGGGTGGCGCTGATCACAGCTGTCGTCAGTGGTGTGTaGATGGTGTTGGGAAGCTGGGCATACTCTGGGTGTTTCTTTCGA +
Preference number: 5 (lower is better)
Translates to: KTAGVALITAVVSGV*MVLGSWAYSGCFFR
Trigger: TCGAAAGAAACACCCAGAGTATGCCCAGCTTCCCAACACCATCCACACACCACTGACGACAGCTGTGATCAGCGCCACCCCAGCTGTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS-3UTR CAA 90 bp CTGGGGACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGAGCTGTGGCATCCTGTaGGACATAAGCTACCTGGGC +
Preference number: 5 (lower is better)
Translates to: LGTAFVGRTAAAQVSGFLSCGIL*DISYLG
Trigger: GCCCAGGTAGCTTATGTCCAACAGGATGCCACAGCT...CAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGTCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp TCGAAAGTACTAAAATACGCCCAATGCTGGGAACCAGAGTGCGAGGTGGGGGCTAGCTACCTGGATGTGTaGCACCTGGATGGCGTGCTG +
Preference number: 5 (lower is better)
Translates to: SKVLKYAQCWEPECEVGASYLDV*HLDGVL
Trigger: CAGCACGCCATCCAGGTGCAACACATCCAGGTAGCT...AGCCCCCACCTCGCACTCTGGTTCCCAGCATTGGGCGTATTTTAGTACTTTCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS CCA 90 bp GCGGCACTTGAACGTGAAGCTGTCGTAGTCTGTGGATGTGATCCGTaGTTTGAAGGTCTTGGAACGGCTGATGCGGTCAGCTTTCTTGGC +
Preference number: 5 (lower is better)
Translates to: AALEREAVVVCGCDP*FEGLGTADAVSFLG
Trigger: GCCAAGAAAGCTGACCGCATCAGCCGTTCCAAGACCTTCAAACCACGGATCACATCCACAGACTACGACAGCTTCACGTTCAAGTGCCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS-3UTR CAA 90 bp TCCCGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAGATCATGTGCAGTCTCAGCTaGTCGGGGCGACAGAAGGCC +
Preference number: 5 (lower is better)
Translates to: SRCNECSLQCQCVWEGEIMCSLS*SGRQKA
Trigger: GGCCTTCTGTCGCCCCGACAAGCTGAGACTGCACAT...GATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp CTGGGGACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGGAGTTAGCAGGTCTGTaGTCACCACAGTCTCTCCAG +
Preference number: 5 (lower is better)
Translates to: LGTAFVGRTAAAQVSGFLELAGL*SPQSLQ
Trigger: CTGGAGAGACTGTGGTGACAACAGACCTGCTAACTC...CAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGTCCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS GCA 90 bp GAGTTCCAAGCATTGGGGAGGTATGTGTGTTGTACAGAGGAATTCTaGTGCTGCTGGAGAGCCTGCCCTTGTGTGGAAGAACTGCCTTGG +
Preference number: 5 (lower is better)
Translates to: EFQALGRYVCCTEEF*CCWRACPCVEELPW
Trigger: CCAAGGCAGTTCTTCCACACAAGGGCAGGCTCTCCAGCAGCAGCAGAATTCCTCTGTACAACACACATACCTCCCCAATGCTTGGAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp GGCATCCGGAACAAAGTGCACCTGTGCAGTGCTCTGTTCATGGTCTaGAGACGTTGGCCACACATGAGCGCTTTCATCTTTGGGATCCAT +
Preference number: 5 (lower is better)
Translates to: GIRNKVHLCSALFMV*RRWPHMSAFIFGIH
Trigger: ATGGATCCCAAAGATGAAAGCGCTCATGTGTGGCCAACGTCTGCAGACCATGAACAGAGCACTGCACAGGTGCACTTTGTTCCGGATGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS-3UTR CAA 90 bp CTTCCTCAGTACATACAGTGGCATGGGCACGTCAGCCACCTACCACCAGCACCAACCTTCAGTTCCTGCTaGGGCTCCACGTTCTTTATT +
Preference number: 5 (lower is better)
Translates to: LPQYIQWHGHVSHLPPAPTFSSC*GSTFFI
Trigger: AATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGT...TGGTGCTGGTGGTAGGTGGCTGACGTGCCCATGCCACTGTATGTACTGAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CAA 90 bp ACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGAAACAACACGAGGCTCTCCTCTaGCTGTGGCTGCAGGTGCAA +
Preference number: 5 (lower is better)
Translates to: TAFVGRTAAAQVSGFLKQHEALL*LWLQVQ
Trigger: TTGCACCTGCAGCCACAGCAAGAGGAGAGCCTCGTG...TTGTTTCAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp TCCCGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAGATCGCATTTCGGATGCGTTaGGCCCTGCGCATGTCATCG +
Preference number: 5 (lower is better)
Translates to: SRCNECSLQCQCVWEGEIAFRMR*ALRMSS
Trigger: CGATGACATGCGCAGGGCCAAACGCATCCGAAATGC...GATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp CCTAGCATGCAAGAGGCCCTGGGTCTGATTTCTAGCATCACACACAAAAGTGTTGAACACAGGAAGTCCTaGCGGTCGGAATGCCGGAGC +
Preference number: 5 (lower is better)
Translates to: PSMQEALGLISSITHKSVEHRKS*RSECRS
Trigger: GCTCCGGCATTCCGACCGCAAGGACTTCCTGTGTTC...AACACTTTTGTGTGTGATGCTAGAAATCAGACCCAGGGCCTCTTGCATGCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp GAGGTCGCGAGGTGTTTGGAGCTTCAGATTCCAAAATTGTGGTGTGAGCTCTGGTGTGGAAGAACTGCCTaGGATATGGGAGGGGCTGAG +
Preference number: 5 (lower is better)
Translates to: EVARCLELQIPKLWCELWCGRTA*DMGGAE
Trigger: CTCAGCCCCTCCCATATCCAAGGCAGTTCTTCCACA...CCAGAGCTCACACCACAATTTTGGAATCTGAAGCTCCAAACACCTCGCGACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp TCCCGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAGATCCTGCCCCCGTTGCCATaGGTGGTGGTTGTGATGATG +
Preference number: 5 (lower is better)
Translates to: SRCNECSLQCQCVWEGEILPPLP*VVVVMM
Trigger: CATCATCACAACCACCACCAATGGCAACGGGGGCAG...GATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS TCA 90 bp CACCACTTGCAACTGTATGTGCTGAGGCTGCTGCAGACCAGATGCTaGCTGAGACACAGGGATATACTGAATCCTTTGGTAGTCCCCCTG +
Preference number: 5 (lower is better)
Translates to: HHLQLYVLRLLQTRC*LRHRDILNPLVVPL
Trigger: CAGGGGGACTACCAAAGGATTCAGTATATCCCTGTGTCTCAGTCAGCATCTGGTCTGCAGCAGCCTCAGCACATACAGTTGCAAGTGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp TCAGCTTTCTTGGCCTCCCTCTCGGGGTTATGCATCCTTTGCATGTaGTCTCGGAGTTTGTCTTTTCGCTTAAACTGCTTCCCGCAGGTG +
Preference number: 5 (lower is better)
Translates to: SAFLASLSGLCILCM*SRSLSFRLNCFPQV
Trigger: CACCTGCGGGAAGCAGTTTAAGCGAAAAGACAAACTCCGAGAGCACATGCAAAGGATGCATAACCCCGAGAGGGAGGCCAAGAAAGCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp ATGCGGTCAGCTTTCTTGGCCTCCCTCTCGGGGTTATGCATCCTTTaGATGTGCTCTCGGAGTTTGTCTTTTCGCTTAAACTGCTTCCCG +
Preference number: 5 (lower is better)
Translates to: MRSAFLASLSGLCIL*MCSRSLSFRLNCFP
Trigger: CGGGAAGCAGTTTAAGCGAAAAGACAAACTCCGAGAGCACATGCAAAGGATGCATAACCCCGAGAGGGAGGCCAAGAAAGCTGACCGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp GAACGGCTGATGCGGTCAGCTTTCTTGGCCTCCCTCTCGGGGTTATaGATCCTTTGCATGTGCTCTCGGAGTTTGTCTTTTCGCTTAAAC +
Preference number: 5 (lower is better)
Translates to: ERLMRSAFLASLSGL*ILCMCSRSLSFRLN
Trigger: GTTTAAGCGAAAAGACAAACTCCGAGAGCACATGCAAAGGATGCATAACCCCGAGAGGGAGGCCAAGAAAGCTGACCGCATCAGCCGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp CAAGCATTGGGGAGGTATGTGTGTTGTACAGAGGAATTCTGCTGCTaGTGGAGAGCCTGCCCTTGTGTGGAAGAACTGCCTTGGATATGG +
Preference number: 5 (lower is better)
Translates to: QALGRYVCCTEEFCC*WRACPCVEELPWIW
Trigger: CCATATCCAAGGCAGTTCTTCCACACAAGGGCAGGCTCTCCAGCAGCAGCAGAATTCCTCTGTACAACACACATACCTCCCCAATGCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp CTCCAGCAGACACAGCAGAGTAACCACGGAAGGAGTTCCAAGCATTaGGGAGGTATGTGTGTTGTACAGAGGAATTCTGCTGCTGCTGGA +
Preference number: 5 (lower is better)
Translates to: LQQTQQSNHGRSSKH*GGMCVVQRNSAAAG
Trigger: TCCAGCAGCAGCAGAATTCCTCTGTACAACACACATACCTCCCCAATGCTTGGAACTCCTTCCGTGGTTACTCTGCTGTGTCTGCTGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074510.4
CDS CCA 90 bp CTGGGGGCAGTGTCATCATTTGAATTTCAGATGCGGACTCATGGCTaGTATCTCCAGCAGACACAGCAGAGTAACCACGGAAGGAGTTCC +
Preference number: 5 (lower is better)
Translates to: LGAVSSFEFQMRTHG*YLQQTQQSNHGRSS
Trigger: GGAACTCCTTCCGTGGTTACTCTGCTGTGTCTGCTGGAGATACCAGCCATGAGTCCGCATCTGAAATTCAAATGATGACACTGCCCCCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074510.4
CDS-3UTR CAA 90 bp TCCCGCTGTAATGAATGCAGTCTACAGTGTCAATGTGTCTGGGAGGGAGAGATCTTGCTGCTATACTGCTaGGAGCAGTGTGGGCAGCAG +
Preference number: 5 (lower is better)
Translates to: SRCNECSLQCQCVWEGEILLLYC*EQCGQQ
Trigger: CTGCTGCCCACACTGCTCCAAGCAGTATAGCAGCAA...GATCTCTCCCTCCCAGACACATTGACACTGTAGACTGCATTCATTACAGCGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS GCA 90 bp TTCCAAGCATTGGGGAGGTATGTGTGTTGTACAGAGGAATTCTGCTaGTGCTGGAGAGCCTGCCCTTGTGTGGAAGAACTGCCTTGGATA +
Preference number: 5 (lower is better)
Translates to: FQALGRYVCCTEEFC*CWRACPCVEELPWI
Trigger: TATCCAAGGCAGTTCTTCCACACAAGGGCAGGCTCTCCAGCAGCAGCAGAATTCCTCTGTACAACACACATACCTCCCCAATGCTTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 90 bp TTGGCGGGAGCTCAGCTCCTGGGTGGTTCTTCAGAATGTGGGCTTTaGGCTTGCTGGCGCTCTTATAAACCTTATCACAATACTGACAGA +
Preference number: 5 (lower is better)
Translates to: LAGAQLLGGSSECGL*ACWRSYKPYHNTDR
Trigger: TCTGTCAGTATTGTGATAAGGTTTATAAGAGCGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCACCCAGGAGCTGAGCTCCCGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS CCA 90 bp TGTCGTCAGTGGTGTGTGGATGGTGTTGGGAAGCTGGGCATACTCTaGGTGTTTCTTTCGAATGTGTTGCACCATCTTGGTCTTGCTGCT +
Preference number: 5 (lower is better)
Translates to: CRQWCVDGVGKLGIL*VFLSNVLHHLGLAA
Trigger: AGCAGCAAGACCAAGATGGTGCAACACATTCGAAAGAAACACCCAGAGTATGCCCAGCTTCCCAACACCATCCACACACCACTGACGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp CTGATCACAGCTGTCGTCAGTGGTGTGTGGATGGTGTTGGGAAGCTaGGCATACTCTGGGTGTTTCTTTCGAATGTGTTGCACCATCTTG +
Preference number: 5 (lower is better)
Translates to: LITAVVSGVWMVLGS*AYSGCFFRMCCTIL
Trigger: CAAGATGGTGCAACACATTCGAAAGAAACACCCAGAGTATGCCCAGCTTCCCAACACCATCCACACACCACTGACGACAGCTGTGATCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS TCA 90 bp GTCCAGTTTCTCATCGTGAGAATTAAGATGCTGCTGCAGCTGCTCTaGGCTGATAAACCGCCGATTGCACTCATAGCACGGCCAGTTCTT +
Preference number: 5 (lower is better)
Translates to: VQFLIVRIKMLLQLL*ADKPPIALIARPVL
Trigger: AAGAACTGGCCGTGCTATGAGTGCAATCGGCGGTTTATCAGCTCAGAGCAGCTGCAGCAGCATCTTAATTCTCACGATGAGAAACTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS TCA 90 bp CTTCCTCTCCCTCTAGTCCTGGTAAACACGTCCAGTTTCTCATCGTaGGAATTAAGATGCTGCTGCAGCTGCTCTGAGCTGATAAACCGC +
Preference number: 5 (lower is better)
Translates to: LPLPLVLVNTSSFSS*ELRCCCSCSELINR
Trigger: GCGGTTTATCAGCTCAGAGCAGCTGCAGCAGCATCTTAATTCTCACGATGAGAAACTGGACGTGTTTACCAGGACTAGAGGGAGAGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp CGAACTCAGCGTAGGATGCAGCGTACCACACCTTCAGTTCCTGCTTaGGCTCCACGTTCTTTATTGTTGTGTAATACACATGGTGGCCAT +
Preference number: 5 (lower is better)
Translates to: RTQRRMQRTTPSVPA*APRSLLLCNTHGGH
Trigger: ATGGCCACCATGTGTATTACACAACAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTGTGGTACGCTGCATCCTACGCTGAGTTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 90 bp AGTAACAGGGGTTGCCACACCACTGTCTGTGATCACAAACTGACCTaGGGGCAGTGTCATCATTTGAATTTCAGATGCGGACTCATGGCT +
Preference number: 5 (lower is better)
Translates to: SNRGCHTTVCDHKLT*GQCHHLNFRCGLMA
Trigger: AGCCATGAGTCCGCATCTGAAATTCAAATGATGACACTGCCCCCAGGTCAGTTTGTGATCACAGACAGTGGTGTGGCAACCCCTGTTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074510.4
CDS-3UTR CAA 90 bp GAGGTCGCGAGGTGTTTGGAGCTTCAGATTCCAAAATTGTGGTGTGAGCTCTGGATGGAAGCGCAAGTGTaGGTCCAGTTTGTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: EVARCLELQIPKLWCELWMEAQV*VQFVLF
Trigger: GAAAAGGACAAACTGGACCAACACTTGCGCTTCCAT...CCAGAGCTCACACCACAATTTTGGAATCTGAAGCTCCAAACACCTCGCGACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp GAGGTCGCGAGGTGTTTGGAGCTTCAGATTCCAAAATTGTGGTGTGAGCTCTGGATGTGTTGCACCATCTaGGTCTTGCTGCTATACTGC +
Preference number: 5 (lower is better)
Translates to: EVARCLELQIPKLWCELWMCCTI*VLLLYC
Trigger: GCAGTATAGCAGCAAGACCAAGATGGTGCAACACAT...CCAGAGCTCACACCACAATTTTGGAATCTGAAGCTCCAAACACCTCGCGACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp AGAAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAACTGTGTAGTCTGCTGTaGGCTGGGGCCTGTGGAGTC +
Preference number: 5 (lower is better)
Translates to: RRGEIPCWLTLKRIQQIKLCSLL*AGACGV
Trigger: GACTCCACAGGCCCCAGCCAACAGCAGACTACACAG...TTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp GCATCCGTAGACTTTTGTAACTGTGAAGGGGAGGGAGGGATCCTGGAAGCAACAACGGAAGAATGTGCATaGTTACACTCCTCACACCAC +
Preference number: 5 (lower is better)
Translates to: ASVDFCNCEGEGGILEATTEECA*LHSSHH
Trigger: GTGGTGTGAGGAGTGTAACAATGCACATTCTTCCGT...TGTTGCTTCCAGGATCCCTCCCTCCCCTTCACAGTTACAAAAGTCTACGGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CAA 90 bp GAGGACATGCATGGGCTCTATGCATACACATATGTAAGAGATTTGAGCATCCGTAGCTGTGGCATCCTGTaGGACATAAGCTACCTGGGC +
Preference number: 5 (lower is better)
Translates to: EDMHGLYAYTYVRDLSIRSCGIL*DISYLG
Trigger: GCCCAGGTAGCTTATGTCCAACAGGATGCCACAGCT...ACGGATGCTCAAATCTCTTACATATGTGTATGCATAGAGCCCATGCATGTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CAA 90 bp ACTCCCACGCCCAGCTCCAGCAGGGCAAATATAAATTACAAAAACTCCAACTGTAAGTGTTGGTCCAGTTaGTCCTTTTCCCGGAAGGCC +
Preference number: 5 (lower is better)
Translates to: TPTPSSSRANINYKNSNCKCWSS*SFSRKA
Trigger: GGCCTTCCGGGAAAAGGACAAACTGGACCAACACTT...ACAGTTGGAGTTTTTGTAATTTATATTTGCCCTGCTGGAGCTGGGCGTGGGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp TATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCATGGGGAAGGCAGCACCTGTaGAGCTGTGGCATCCTGTTG +
Preference number: 5 (lower is better)
Translates to: YEISHFTRNSSSVHTVAWGRQHL*SCGILL
Trigger: CAACAGGATGCCACAGCTCAACAGGTGCTGCCTTCC...CCATGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CAA 90 bp ACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGAAACAAATGTGCTCTCGGAGTTaGTCTTTTCGCTTAAACTGC +
Preference number: 5 (lower is better)
Translates to: TAFVGRTAAAQVSGFLKQMCSRS*SFRLNC
Trigger: GCAGTTTAAGCGAAAAGACAAACTCCGAGAGCACAT...TTGTTTCAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp AAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATTGGTGTGTGGATGGTGTaGGGAAGCTGGGCATACTCT +
Preference number: 5 (lower is better)
Translates to: KRGDTLLAHIKENPTDQIGVWMV*GSWAYS
Trigger: AGAGTATGCCCAGCTTCCCAACACCATCCACACACC...AATTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp TATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCATGGCATGGTCTGCAGACGTaGGCCACACATGAGCGCTTT +
Preference number: 5 (lower is better)
Translates to: YEISHFTRNSSSVHTVAWHGLQT*ATHERF
Trigger: AAAGCGCTCATGTGTGGCCAACGTCTGCAGACCATG...CCATGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS CCA 90 bp TCATTTGAATTTCAGATGAGTAACCACGGAAGGAGTTCCAAGCATTaGGGAGGTATGTGTGTTGTACAGAGGAATTCTGCTGCTGCTGGA +
Preference number: 5 (lower is better)
Translates to: SFEFQMSNHGRSSKH*GGMCVVQRNSAAAG
Trigger: TCCAGCAGCAGCAGAATTCCTCTGTACAACACACATACCTCCCCAATGCTTGGAACTCCTTCCGTGGTTACTCATCTGAAATTCAAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS-3UTR CAA 90 bp TATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCATGGCACATGGTGGCCATATaGGTAAGCTACCAGGTTCTG +
Preference number: 5 (lower is better)
Translates to: YEISHFTRNSSSVHTVAWHMVAI*VSYQVL
Trigger: CAGAACCTGGTAGCTTACCAATATGGCCACCATGTG...CCATGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CAA 90 bp TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTAAGTATGTATGTACACATGGTGGCCATATaGGTAAGCTACCAGGTTCTG +
Preference number: 5 (lower is better)
Translates to: SLSLSLSLSLSLSLSMYVHMVAI*VSYQVL
Trigger: CAGAACCTGGTAGCTTACCAATATGGCCACCATGTG...TACATACATACTTAAGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp AGAAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAAACCTTCAGTTCCTGCTaGGGCTCCACGTTCTTTATT +
Preference number: 5 (lower is better)
Translates to: RRGEIPCWLTLKRIQQIKTFSSC*GSTFFI
Trigger: AATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGT...TTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp AAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATTGGGGTTATGCATCCTTaGCATGTGCTCTCGGAGTTT +
Preference number: 5 (lower is better)
Translates to: KRGDTLLAHIKENPTDQIGVMHP*HVLSEF
Trigger: AAACTCCGAGAGCACATGCAAAGGATGCATAACCCC...AATTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp ACAGCATTTGTAGGGAGGACTGCTGCTGCCCAGGTTTCAGGTTTTCTGAAACAATGTCTGGATGTCTCTTaGATAAGTGATTTACCAGCA +
Preference number: 5 (lower is better)
Translates to: TAFVGRTAAAQVSGFLKQCLDVS*ISDLPA
Trigger: TGCTGGTAAATCACTTATCAAAGAGACATCCAGACA...TTGTTTCAGAAAACCTGAAACCTGGGCAGCAGCAGTCCTCCCTACAAATGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp AAGAGGGGAGATACCTTGCTGGCTCACATTAAAGAGAATCCAACAGATCAAATTAGTCACTGCTTTCACTaGCCCAGAAGTAACAGGGGT +
Preference number: 5 (lower is better)
Translates to: KRGDTLLAHIKENPTDQISHCFH*PRSNRG
Trigger: ACCCCTGTTACTTCTGGGCAAGTGAAAGCAGTGACT...AATTTGATCTGTTGGATTCTCTTTAATGTGAGCCAGCAAGGTATCTCCCCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp AGGGCAAATATAAATTACAAAAACTCCAACTGTACCTTTGAGATGGTCTACCGCCGGCCAGTTCTTCTCTaGCTCTCGAAGAACTTTCCT +
Preference number: 5 (lower is better)
Translates to: RANINYKNSNCTFEMVYRRPVLL*LSKNFP
Trigger: AGGAAAGTTCTTCGAGAGCAAGAGAAGAACTGGCCG...GCGGTAGACCATCTCAAAGGTACAGTTGGAGTTTTTGTAATTTATATTTGCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp TTGTTAAAATTACTGAAAACTCAATGCATGAGATATAGCGGTCCTGACCTAATCGTGGCAGCTGAGGAATaGGGATGGACGCTTGTTCTG +
Preference number: 5 (lower is better)
Translates to: LLKLLKTQCMRYSGPDLIVAAEE*GWTLVL
Trigger: CAGAACAAGCGTCCATCCCAATTCCTCAGCTGCCAC...GATTAGGTCAGGACCGCTATATCTCATGCATTGAGTTTTCAGTAATTTTAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp TTGTTAAAATTACTGAAAACTCAATGCATGAGATATAGCGGTCCTGACCTAATCCGTGGTTTGAAGGTCTaGGAACGGCTGATGCGGTCA +
Preference number: 5 (lower is better)
Translates to: LLKLLKTQCMRYSGPDLIRGLKV*ERLMRS
Trigger: TGACCGCATCAGCCGTTCCAAGACCTTCAAACCACG...GATTAGGTCAGGACCGCTATATCTCATGCATTGAGTTTTCAGTAATTTTAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS TCA 90 bp CATTCTTATCACAATACTGACAGAAGTAATCTCGATTGGGTTTTATaGTGGGCAGGGTCAACTCAGGCACCTCTTCTATCTTCATGTCTG +
Preference number: 5 (lower is better)
Translates to: HSYHNTDRSNLDWVL*WAGSTQAPLLSSCL
Trigger: CAGACATGAAGATAGAAGAGGTGCCTGAGTTGACCCTGCCCATCATAAAACCCAATCGAGATTACTTCTGTCAGTATTGTGATAAGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074510.4
ENSMUST00000215847.2
CDS TCA 90 bp AAACCTTATCACAATACTGACAGAAGTAATCTCGATTGGGTTTTATaGTGGGCAGGGTCAACTCAGGCACCTCTTCTATCTTCATGTCTG +
Preference number: 5 (lower is better)
Translates to: KPYHNTDRSNLDWVL*WAGSTQAPLLSSCL
Trigger: CAGACATGAAGATAGAAGAGGTGCCTGAGTTGACCCTGCCCATCATAAAACCCAATCGAGATTACTTCTGTCAGTATTGTGATAAGGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp GAGGACATGCATGGGCTCTATGCATACACATATGTAAGAGATTTGAGCATCCGTGCTCCACGTTCTTTATaGTTGTGTAATACACATGGT +
Preference number: 5 (lower is better)
Translates to: EDMHGLYAYTYVRDLSIRAPRSL*LCNTHG
Trigger: ACCATGTGTATTACACAACAATAAAGAACGTGGAGC...ACGGATGCTCAAATCTCTTACATATGTGTATGCATAGAGCCCATGCATGTCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CAA 90 bp TTGTTAAAATTACTGAAAACTCAATGCATGAGATATAGCGGTCCTGACCTAATCTTCAGAATGTGGGCTTaGCGCTTGCTGGCGCTCTTA +
Preference number: 5 (lower is better)
Translates to: LLKLLKTQCMRYSGPDLIFRMWA*RLLALL
Trigger: TAAGAGCGCCAGCAAGCGCAAAGCCCACATTCTGAA...GATTAGGTCAGGACCGCTATATCTCATGCATTGAGTTTTCAGTAATTTTAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp AGTCTTGCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTAGAGAGAGCAGAGGCTaGCTTTTCCTCCAATTCTGG +
Preference number: 5 (lower is better)
Translates to: SLAFRDWSQHFMLKLLLPRESRG*LFLQFW
Trigger: CCAGAATTGGAGGAAAAGCAAGCCTCTGCTCTCTCT...AGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp ATGGGCCAGCTTCAGCTTCTCATTAGGTACTTTTTAGCTCTACATCTTTTAAGAACGGAAGAATGTGCATaGTTACACTCCTCACACCAC +
Preference number: 5 (lower is better)
Translates to: MGQLQLLIRYFLALHLLRTEECA*LHSSHH
Trigger: GTGGTGTGAGGAGTGTAACAATGCACATTCTTCCGT...TCTTAAAAGATGTAGAGCTAAAAAGTACCTAATGAGAAGCTGAAGCTGGCCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp TATGAAATCTCCCATTTCACAAGAAACTCTTCCTCAGTACATACAGTGGCATGGCCACGTTCTTTATTGTaGTGTAATACACATGGTGGC +
Preference number: 5 (lower is better)
Translates to: YEISHFTRNSSSVHTVAWPRSLL*CNTHGG
Trigger: GCCACCATGTGTATTACACAACAATAAAGAACGTGG...CCATGCCACTGTATGTACTGAGGAAGAGTTTCTTGTGAAATGGGAGATTTCATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS-3UTR CAA 90 bp CCCAATAAGCTAGCTGCCTTTGTTAAAATTACTGAAAACTCAATGCATGAGATACTGCTGATGAAGCCCTaGTTACAGAGATCACAGGTC +
Preference number: 5 (lower is better)
Translates to: PNKLAAFVKITENSMHEILLMKP*LQRSQV
Trigger: GACCTGTGATCTCTGTAACAAGGGCTTCATCAGCAG...TATCTCATGCATTGAGTTTTCAGTAATTTTAACAAAGGCAGCTAGCTTATTGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp AGTCTTGCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTGTGTTCGGTAATCCGTaGTTAAGGTCTGGGACAGTT +
Preference number: 5 (lower is better)
Translates to: SLAFRDWSQHFMLKLLLPVFGNP*LRSGTV
Trigger: AACTGTCCCAGACCTTAACAACGGATTACCGAACAC...AGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGCAAGACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp GCATTTCGTGACTGGAGTCAACATTTCATGTTGAAATTACTGTTACCTTTTTGTAAGGAGTTCCAAGCATaGGGGAGGTATGTGTGTTGT +
Preference number: 5 (lower is better)
Translates to: AFRDWSQHFMLKLLLPFCKEFQA*GRYVCC
Trigger: ACAACACACATACCTCCCCAATGCTTGGAACTCCTT...ACAAAAAGGTAACAGTAATTTCAACATGAAATGTTGACTCCAGTCACGAAATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS-3UTR CAA 90 bp CCCAATAAGCTAGCTGCCTTTGTTAAAATTACTGAAAACTCAATGCATGAGATAGCTCCACGTTCTTTATaGTTGTGTAATACACATGGT +
Preference number: 5 (lower is better)
Translates to: PNKLAAFVKITENSMHEIAPRSL*LCNTHG
Trigger: ACCATGTGTATTACACAACAATAAAGAACGTGGAGC...TATCTCATGCATTGAGTTTTCAGTAATTTTAACAAAGGCAGCTAGCTTATTGGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS TCA 72 bp CCTGGGATGCTGACGGAGCCGCAGGGGCGGGCTCTGTaGCCTGGATGTGTTGCACCTGGATGGCGTGCTGCG +
Preference number: 6 (lower is better)
Translates to: PGMLTEPQGRAL*PGCVAPGWRAA
Trigger: CGCAGCACGCCATCCAGGTGCAACACATCCAGGTCACAGAGCCCGCCCCTGCGGCTCCGTCAGCATCCCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074510.4
ENSMUST00000215847.2
CDS TCA 72 bp AGAGGGGCTCAATGGCTGCCCAGCTACCTGGGATGCTaGCGGAGCCGCAGGGGCGGGCTCTGTGACCTGGAT +
Preference number: 6 (lower is better)
Translates to: RGAQWLPSYLGC*RSRRGGLCDLD
Trigger: ATCCAGGTCACAGAGCCCGCCCCTGCGGCTCCGTCAGCATCCCAGGTAGCTGGGCAGCCATTGAGCCCCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074510.4
ENSMUST00000215847.2
CDS CAA 72 bp CGGAGCCGCAGGGGCGGGCTCTGTGACCTGGATGTGTaGCACCTGGATGGCGTGCTGCGTGTAAGTCTGAGG +
Preference number: 6 (lower is better)
Translates to: RSRRGGLCDLDV*HLDGVLRVSLR
Trigger: CCTCAGACTTACACGCAGCACGCCATCCAGGTGCAACACATCCAGGTCACAGAGCCCGCCCCTGCGGCTCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074510.4
ENSMUST00000215847.2
CDS CCA 72 bp CCAGCGGCCCCTCCACTGGGCCGAACTGGGTGCGCTTaGGAATCCGTCTTTTGGAGAACACTCCTCCGAGGA +
Preference number: 6 (lower is better)
Translates to: PAAPPLGRTGCA*ESVFWRTLLRG
Trigger: TCCTCGGAGGAGTGTTCTCCAAAAGACGGATTCCCAAGCGCACCCAGTTCGGCCCAGTGGAGGGGCCGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp ACCAGCGGCCCCTCCACTGGGCCGAACTGGGTGCGCTaGGGAATCCGTCTTTTGGAGAACACTCCTCCGAGG +
Preference number: 6 (lower is better)
Translates to: TSGPSTGPNWVR*GIRLLENTPPR
Trigger: CCTCGGAGGAGTGTTCTCCAAAAGACGGATTCCCAAGCGCACCCAGTTCGGCCCAGTGGAGGGGCCGCTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp CTTGCCCGGGTGAGCACAGGCCGGTTAGGGATGGGATaGAAGGGGCCATGCTTCGGGCACACGGAAGAATGT +
Preference number: 6 (lower is better)
Translates to: LARVSTGRLGMG*KGPCFGHTEEC
Trigger: ACATTCTTCCGTGTGCCCGAAGCATGGCCCCTTGCATCCCATCCCTAACCGGCCTGTGCTCACCCGGGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp CCGCAGGTGGAACACAGGAAGTCCTTGCGGTCGGAATaGCGGAGCATGTGCAGTCTCAGCTTGTCGGGGCGA +
Preference number: 6 (lower is better)
Translates to: PQVEHRKSLRSE*RSMCSLSLSGR
Trigger: TCGCCCCGACAAGCTGAGACTGCACATGCTCCGGCATTCCGACCGCAAGGACTTCCTGTGTTCCACCTGCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp TTGGCCCTGCGCATGTCATCGGCTGTCAGAGTGGTCTaGGTAGGCACGAGGCTCTCCTCTTGCTGTGGCTGC +
Preference number: 6 (lower is better)
Translates to: LALRMSSAVRVV*VGTRLSSCCGC
Trigger: GCAGCCACAGCAAGAGGAGAGCCTCGTGCCTACCCAGACCACTCTGACAGCCGATGACATGCGCAGGGCCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp CGGGCAGTTCCCCTCCCGCCCATGGAAGCGCAAGTGTaGGTCCAGTTTGTCCTTTTCCCGGAAGGCCTTCCC +
Preference number: 6 (lower is better)
Translates to: RAVPLPPMEAQV*VQFVLFPEGLP
Trigger: GGGAAGGCCTTCCGGGAAAAGGACAAACTGGACCAACACTTGCGCTTCCATGGGCGGGAGGGGAACTGCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 90 bp CTGCTGAGCAGAGGGGCTCAATGGCTGCCCAGCTACCTGGATGTGTaGCACCTGGATGGCGTGCTGCGTGTAAGTCTGAGGGTCGTGCAG +
Preference number: 6 (lower is better)
Translates to: LLSRGAQWLPSYLDV*HLDGVLRVSLRVVQ
Trigger: CTGCACGACCCTCAGACTTACACGCAGCACGCCATCCAGGTGCAACACATCCAGGTAGCTGGGCAGCCATTGAGCCCCTCTGCTCAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS TCA 72 bp CAGCAGACAGGAGGGGTGGCAATGGTACCCGTCAGCTaGGTGTGGGTGCTCAGCATAGGGTCAGGCTCTCCA +
Preference number: 6 (lower is better)
Translates to: QQTGGVAMVPVS*VWVLSIGSGSP
Trigger: TGGAGAGCCTGACCCTATGCTGAGCACCCACACTCAGCTGACGGGTACCATTGCCACCCCTCCTGTCTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp CCTATCTATGTAGAGGACCAGAGGCAGGCTCGCTCTTaGCCGGGTGAGCACAGGCCGGTTAGGGATGGGATG +
Preference number: 6 (lower is better)
Translates to: PIYVEDQRQARS*PGEHRPVRDGM
Trigger: CATCCCATCCCTAACCGGCCTGTGCTCACCCGGGCAAGAGCGAGCCTGCCTCTGGTCCTCTACATAGATAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp CACAGGAAGTCCTTGCGGTCGGAATGCCGGAGCATGTaGAGTCTCAGCTTGTCGGGGCGACAGAAGGCCTTG +
Preference number: 6 (lower is better)
Translates to: HRKSLRSECRSM*SLSLSGRQKAL
Trigger: CAAGGCCTTCTGTCGCCCCGACAAGCTGAGACTGCACATGCTCCGGCATTCCGACCGCAAGGACTTCCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp GGGCAGTTCCCCTCCCGCCCATGGAAGCGCAAGTGTTaGTCCAGTTTGTCCTTTTCCCGGAAGGCCTTCCCA +
Preference number: 6 (lower is better)
Translates to: GQFPSRPWKRKC*SSLSFSRKAFP
Trigger: TGGGAAGGCCTTCCGGGAAAAGGACAAACTGGACCAACACTTGCGCTTCCATGGGCGGGAGGGGAACTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp AAGTCTGAGGGTCGTGCAGCTGGCCAACGTCCACTGTaGACTGCTGAGACTGATGTGGGGAAGTGGCCGGAG +
Preference number: 6 (lower is better)
Translates to: KSEGRAAGQRPL*TAETDVGKWPE
Trigger: CTCCGGCCACTTCCCCACATCAGTCTCAGCAGTCCACAGTGGACGTTGGCCAGCTGCACGACCCTCAGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp GAGCCCCTGCTGTACCTGCTGAGCAGAGGGGCTCAATaGCTGCCCAGCTACCTGGATGTGTTGCACCTGGAT +
Preference number: 6 (lower is better)
Translates to: EPLLYLLSRGAQ*LPSYLDVLHLD
Trigger: ATCCAGGTGCAACACATCCAGGTAGCTGGGCAGCCATTGAGCCCCTCTGCTCAGCAGGTACAGCAGGGGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS CAA 90 bp ACAGGTCAACGGGCAGTTCCCCTCCCGCCCATGGAAGCGCAAGTGTaGGTCCAGTTTGTCCTTTTCCCGGAAGGCCTTCCCACACTGCAG +
Preference number: 6 (lower is better)
Translates to: TGQRAVPLPPMEAQV*VQFVLFPEGLPTLQ
Trigger: CTGCAGTGTGGGAAGGCCTTCCGGGAAAAGGACAAACTGGACCAACACTTGCGCTTCCATGGGCGGGAGGGGAACTGCCCGTTGACCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp GACAGCTGGGGTGGCGCTGATCACAGCTGTCGTCAGTaGTGTGTGGATGGTGTTGGGAAGCTGGGCATACTC +
Preference number: 6 (lower is better)
Translates to: DSWGGADHSCRQ*CVDGVGKLGIL
Trigger: GAGTATGCCCAGCTTCCCAACACCATCCACACACCACTGACGACAGCTGTGATCAGCGCCACCCCAGCTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp CCCTCCCGCCCATGGAAGCGCAAGTGTTGGTCCAGTTaGTCCTTTTCCCGGAAGGCCTTCCCACACTGCAGA +
Preference number: 6 (lower is better)
Translates to: PSRPWKRKCWSS*SFSRKAFPHCR
Trigger: TCTGCAGTGTGGGAAGGCCTTCCGGGAAAAGGACAAACTGGACCAACACTTGCGCTTCCATGGGCGGGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp GCTCTCCAGGGCCAGCAGGACGCAGTTTCCGAATACTaGGCGGGAGCTCAGCTCCTGGGTGGTTCTTCAGAA +
Preference number: 6 (lower is better)
Translates to: ALQGQQDAVSEY*AGAQLLGGSSE
Trigger: TTCTGAAGAACCACCCAGGAGCTGAGCTCCCGCCAAGTATTCGGAAACTGCGTCCTGCTGGCCCTGGAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp AGAGGGGCTCAATGGCTGCCCAGCTACCTGGATGTGTaGCACCTGGATGGCGTGCTGCGTGTAAGTCTGAGG +
Preference number: 6 (lower is better)
Translates to: RGAQWLPSYLDV*HLDGVLRVSLR
Trigger: CCTCAGACTTACACGCAGCACGCCATCCAGGTGCAACACATCCAGGTAGCTGGGCAGCCATTGAGCCCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS CAA 90 bp TGCAGCTTCATGTGGCTCTCCAAGGAGGCGCTGCTGATGAAGCCCTaGTTACAGAGATCACAGGTCAACGGGCAGTTCCCCTCCCGCCCA +
Preference number: 6 (lower is better)
Translates to: CSFMWLSKEALLMKP*LQRSQVNGQFPSRP
Trigger: TGGGCGGGAGGGGAACTGCCCGTTGACCTGTGATCTCTGTAACAAGGGCTTCATCAGCAGCGCCTCCTTGGAGAGCCACATGAAGCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 90 bp GGAGGCACCATCTGCTGTATACACCACCTGCTGGGGTGGACGGACTaGGTCGTCAGTGTATACAATCTGAGCCACAGTTCCGGCATCCGG +
Preference number: 6 (lower is better)
Translates to: GGTICCIHHLLGWTD*VVSVYNLSHSSGIR
Trigger: CCGGATGCCGGAACTGTGGCTCAGATTGTATACACTGACGACCAAGTCCGTCCACCCCAGCAGGTGGTGTATACAGCAGATGGTGCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp CTCTTGCTGTGGCTGCAGGTGCAAGGTGTGAGTTTCTaGTTCCTGCTCCAGAGAAGGCGGGGTTTCCTGTGG +
Preference number: 6 (lower is better)
Translates to: LLLWLQVQGVSF*FLLQRRRGFLW
Trigger: CCACAGGAAACCCCGCCTTCTCTGGAGCAGGAACCAGAAACTCACACCTTGCACCTGCAGCCACAGCAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp CTCTCCAGGGCCAGCAGGACGCAGTTTCCGAATACTTaGCGGGAGCTCAGCTCCTGGGTGGTTCTTCAGAAT +
Preference number: 6 (lower is better)
Translates to: LSRASRTQFPNT*RELSSWVVLQN
Trigger: ATTCTGAAGAACCACCCAGGAGCTGAGCTCCCGCCAAGTATTCGGAAACTGCGTCCTGCTGGCCCTGGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp TTGCGGTCGGAATGCCGGAGCATGTGCAGTCTCAGCTaGTCGGGGCGACAGAAGGCCTTGTCACACTCTGTA +
Preference number: 6 (lower is better)
Translates to: LRSECRSMCSLS*SGRQKALSHSV
Trigger: TACAGAGTGTGACAAGGCCTTCTGTCGCCCCGACAAGCTGAGACTGCACATGCTCCGGCATTCCGACCGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 90 bp GTTGCCATTGGTGGTGGTTGTGATGATGTACTGTGTAGTCTGCTGTaGGCTGGGGCCTGTGGAGTCCAGGGAGTCACTGTGTGCAGAGGG +
Preference number: 6 (lower is better)
Translates to: VAIGGGCDDVLCSLL*AGACGVQGVTVCRG
Trigger: CCCTCTGCACACAGTGACTCCCTGGACTCCACAGGCCCCAGCCAACAGCAGACTACACAGTACATCATCACAACCACCACCAATGGCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp AGCACAGGCCGGTTAGGGATGGGATGCAAGGGGCCATaGTTCGGGCACACGGAAGAATGTGCATTGTTACAC +
Preference number: 6 (lower is better)
Translates to: STGRLGMGCKGP*FGHTEECALLH
Trigger: GTGTAACAATGCACATTCTTCCGTGTGCCCGAAGCATGGCCCCTTGCATCCCATCCCTAACCGGCCTGTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp CAGGGAGTCACTGTGTGCAGAGGGCTGAACCTGGACTaGTCCAGAGAGAGCAGAGGCTTGCTTTTCCTCCAA +
Preference number: 6 (lower is better)
Translates to: QGVTVCRGLNLD*SRESRGLLFLQ
Trigger: TTGGAGGAAAAGCAAGCCTCTGCTCTCTCTGGAGCAGTCCAGGTTCAGCCCTCTGCACACAGTGACTCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp AGCCACAGTTCCGGCATCCGGAACAAAGTGCACCTGTaGAGTGCTCTGTTCATGGTCTGCAGACGTTGGCCA +
Preference number: 6 (lower is better)
Translates to: SHSSGIRNKVHL*SALFMVCRRWP
Trigger: TGGCCAACGTCTGCAGACCATGAACAGAGCACTGCACAGGTGCACTTTGTTCCGGATGCCGGAACTGTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp AGATCACAGGTCAACGGGCAGTTCCCCTCCCGCCCATaGAAGCGCAAGTGTTGGTCCAGTTTGTCCTTTTCC +
Preference number: 6 (lower is better)
Translates to: RSQVNGQFPSRP*KRKCWSSLSFS
Trigger: GGAAAAGGACAAACTGGACCAACACTTGCGCTTCCATGGGCGGGAGGGGAACTGCCCGTTGACCTGTGATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp AGTTTCCGAATACTTGGCGGGAGCTCAGCTCCTGGGTaGTTCTTCAGAATGTGGGCTTTGCGCTTGCTGGCG +
Preference number: 6 (lower is better)
Translates to: SFRILGGSSAPG*FFRMWALRLLA
Trigger: CGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCACCCAGGAGCTGAGCTCCCGCCAAGTATTCGGAAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp GAGTCGCCAGAGGGTCGGAACCATGCACACTCTCAATaGAAGGCAGCACCTGTTGAGCTGTGGCATCCTGTT +
Preference number: 6 (lower is better)
Translates to: ESPEGRNHAHSQ*KAAPVELWHPV
Trigger: AACAGGATGCCACAGCTCAACAGGTGCTGCCTTCCATTGAGAGTGTGCATGGTTCCGACCCTCTGGCGACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117389.8
ENSMUST00000215847.2
CDS CCA 72 bp AGAGCCCTAATCATCACCCTGGCTGGCAGGCAGCTGTaGATCCAGTTCTGTACCTTCAGTTCCTGCTTGGGC +
Preference number: 6 (lower is better)
Translates to: RALIITLAGRQL*IQFCTFSSCLG
Trigger: GCCCAAGCAGGAACTGAAGGTACAGAACTGGATCCACAGCTGCCTGCCAGCCAGGGTGATGATTAGGGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS CAA 72 bp ATGTGGCTCTCCAAGGAGGCGCTGCTGATGAAGCCCTaGTTACAGAGATCACAGGTCAACGGGCAGTTCCCC +
Preference number: 6 (lower is better)
Translates to: MWLSKEALLMKP*LQRSQVNGQFP
Trigger: GGGGAACTGCCCGTTGACCTGTGATCTCTGTAACAAGGGCTTCATCAGCAGCGCCTCCTTGGAGAGCCACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 90 bp ATCCGTGGTTTGAAGGTCTTGGAACGGCTGATGCGGTCAGCTTTCTaGGCCTCCCTCTCGGGGTTATGCATCCTTTGCATGTGCTCTCGG +
Preference number: 6 (lower is better)
Translates to: IRGLKVLERLMRSAF*ASLSGLCILCMCSR
Trigger: CCGAGAGCACATGCAAAGGATGCATAACCCCGAGAGGGAGGCCAAGAAAGCTGACCGCATCAGCCGTTCCAAGACCTTCAAACCACGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS TCA 72 bp TGGGGTGGACGGACTTGGTCGTCAGTGTATACAATCTaGGCCACAGTTCCGGCATCCGGAACAAAGTGCACC +
Preference number: 6 (lower is better)
Translates to: WGGRTWSSVYTI*ATVPASGTKCT
Trigger: GGTGCACTTTGTTCCGGATGCCGGAACTGTGGCTCAGATTGTATACACTGACGACCAAGTCCGTCCACCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS TCA 72 bp GTGGATGTAGACCAGTGTGTGCTCTGGACCGTCCACTaGCGTGTAGGAGGCACCATCTGCTGTATACACCAC +
Preference number: 6 (lower is better)
Translates to: VDVDQCVLWTVH*RVGGTICCIHH
Trigger: GTGGTGTATACAGCAGATGGTGCCTCCTACACGTCAGTGGACGGTCCAGAGCACACACTGGTCTACATCCAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS TCA 72 bp TGGCACTATCTGTCGTTAAGACAGCTGGGGTGGCGCTaGTCACAGCTGTCGTCAGTGGTGTGTGGATGGTGT +
Preference number: 6 (lower is better)
Translates to: WHYLSLRQLGWR*SQLSSVVCGWC
Trigger: ACACCATCCACACACCACTGACGACAGCTGTGATCAGCGCCACCCCAGCTGTCTTAACGACAGATAGTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp CCATTGGTGGTGGTTGTGATGATGTACTGTGTAGTCTaGTGTTGGCTGGGGCCTGTGGAGTCCAGGGAGTCA +
Preference number: 6 (lower is better)
Translates to: PLVVVVMMYCVV*CWLGPVESRES
Trigger: TGACTCCCTGGACTCCACAGGCCCCAGCCAACAGCAGACTACACAGTACATCATCACAACCACCACCAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp CAGTTCCGGCATCCGGAACAAAGTGCACCTGTGCAGTaGTCTGTTCATGGTCTGCAGACGTTGGCCACACAT +
Preference number: 6 (lower is better)
Translates to: QFRHPEQSAPVQ*SVHGLQTLATH
Trigger: ATGTGTGGCCAACGTCTGCAGACCATGAACAGAGCACTGCACAGGTGCACTTTGTTCCGGATGCCGGAACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp GGAGGCACCATCTGCTGTATACACCACCTGCTGGGGTaGACGGACTTGGTCGTCAGTGTATACAATCTGAGC +
Preference number: 6 (lower is better)
Translates to: GGTICCIHHLLG*TDLVVSVYNLS
Trigger: GCTCAGATTGTATACACTGACGACCAAGTCCGTCCACCCCAGCAGGTGGTGTATACAGCAGATGGTGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp AGCTGTGGCATCCTGTTGGACATAAGCTACCTGGGCTaGGTCTGTAAACAGAGTCTGTGCAGCTTCCACCGG +
Preference number: 6 (lower is better)
Translates to: SCGILLDISYLG*VCKQSLCSFHR
Trigger: CCGGTGGAAGCTGCACAGACTCTGTTTACAGACCCAGCCCAGGTAGCTTATGTCCAACAGGATGCCACAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp ACGCAGTTTCCGAATACTTGGCGGGAGCTCAGCTCCTaGGTGGTTCTTCAGAATGTGGGCTTTGCGCTTGCT +
Preference number: 6 (lower is better)
Translates to: TQFPNTWRELSS*VVLQNVGFALA
Trigger: AGCAAGCGCAAAGCCCACATTCTGAAGAACCACCCAGGAGCTGAGCTCCCGCCAAGTATTCGGAAACTGCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp TGTGTTGCACCATCTTGGTCTTGCTGCTATACTGCTTaGAGCAGTGTGGGCAGCAGACAGGAGGGGTGGCAA +
Preference number: 6 (lower is better)
Translates to: CVAPSWSCCYTA*SSVGSRQEGWQ
Trigger: TTGCCACCCCTCCTGTCTGCTGCCCACACTGCTCCAAGCAGTATAGCAGCAAGACCAAGATGGTGCAACACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp GAGTTAGCAGGTCTGTTGTCACCACAGTCTCTCCAGTaGCACTATCTGTCGTTAAGACAGCTGGGGTGGCGC +
Preference number: 6 (lower is better)
Translates to: ELAGLLSPQSLQ*HYLSLRQLGWR
Trigger: GCGCCACCCCAGCTGTCTTAACGACAGATAGTGCCACTGGAGAGACTGTGGTGACAACAGACCTGCTAACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp GCTCAGCTCCTGGGTGGTTCTTCAGAATGTGGGCTTTaGGCTTGCTGGCGCTCTTATAAACCTGCAGGGTTA +
Preference number: 6 (lower is better)
Translates to: AQLLGGSSECGL*ACWRSYKPAGL
Trigger: TAACCCTGCAGGTTTATAAGAGCGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCACCCAGGAGCTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074510.4
ENSMUST00000215847.2
CDS CCA 72 bp CTGGGCCGAACTGGGTGCGCTTGGGAATCCGTCTTTTaGAGAACACTCCTCCGAGGAACCTATCTATGTAGA +
Preference number: 6 (lower is better)
Translates to: LGRTGCAWESVF*RTLLRGTYLCR
Trigger: TCTACATAGATAGGTTCCTCGGAGGAGTGTTCTCCAAAAGACGGATTCCCAAGCGCACCCAGTTCGGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp GAACGTGAAGCTGTCGTAGTCTGTGGATGTGATCCGTaGTTTGAAGGTCTTGGAACGGCTGATGCGGTCAGC +
Preference number: 6 (lower is better)
Translates to: EREAVVVCGCDP*FEGLGTADAVS
Trigger: GCTGACCGCATCAGCCGTTCCAAGACCTTCAAACCACGGATCACATCCACAGACTACGACAGCTTCACGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp AAGGGGCCATGCTTCGGGCACACGGAAGAATGTGCATaGTTACACTCCTCACACCCTGCAAGAGAAAGCGAG +
Preference number: 6 (lower is better)
Translates to: KGPCFGHTEECA*LHSSHPARESE
Trigger: CTCGCTTTCTCTTGCAGGGTGTGAGGAGTGTAACAATGCACATTCTTCCGTGTGCCCGAAGCATGGCCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074510.4
CDS CAA 72 bp TTGAAGGTCTTGGAACGGCTGATGCGGTCAGCTTTCTaGGCCTCCCTCTCGGGGTTATGCATCCTTTGCATG +
Preference number: 6 (lower is better)
Translates to: LKVLERLMRSAF*ASLSGLCILCM
Trigger: CATGCAAAGGATGCATAACCCCGAGAGGGAGGCCAAGAAAGCTGACCGCATCAGCCGTTCCAAGACCTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp GGGACAGTTCTGTCATCGCCTGAGTTAGCAGGTCTGTaGTCACCACAGTCTCTCCAGTGGCACTATCTGTCG +
Preference number: 6 (lower is better)
Translates to: GTVLSSPELAGL*SPQSLQWHYLS
Trigger: CGACAGATAGTGCCACTGGAGAGACTGTGGTGACAACAGACCTGCTAACTCAGGCGATGACAGAACTGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp AAGGGGCCATGCTTCGGGCACACGGAAGAATGTGCATaGTTACACTCCTCACACCACAAGTCATGGGGGTCA +
Preference number: 6 (lower is better)
Translates to: KGPCFGHTEECA*LHSSHHKSWGS
Trigger: TGACCCCCATGACTTGTGGTGTGAGGAGTGTAACAATGCACATTCTTCCGTGTGCCCGAAGCATGGCCCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp CCCATTTTCACTGGTGATTTCCAAACGGATAAATTTTaGAGGACGCCCGGGTCGCCGGCCAGGACCAAATCT +
Preference number: 6 (lower is better)
Translates to: PIFTGDFQTDKF*RTPGSPARTKS
Trigger: AGATTTGGTCCTGGCCGGCGACCCGGGCGTCCTCCAAAATTTATCCGTTTGGAAATCACCAGTGAAAATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp GCTGTCGTCAGTGGTGTGTGGATGGTGTTGGGAAGCTaGGCATACTCTGGGTGTTTCTTTCGAATGTGTTGC +
Preference number: 6 (lower is better)
Translates to: AVVSGVWMVLGS*AYSGCFFRMCC
Trigger: GCAACACATTCGAAAGAAACACCCAGAGTATGCCCAGCTTCCCAACACCATCCACACACCACTGACGACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp ATCTGCTGTATACACCACCTGCTGGGGTGGACGGACTaGGTCGTCAGTGTATACAATCTGAGCCACAGTTCC +
Preference number: 6 (lower is better)
Translates to: ICCIHHLLGWTD*VVSVYNLSHSS
Trigger: GGAACTGTGGCTCAGATTGTATACACTGACGACCAAGTCCGTCCACCCCAGCAGGTGGTGTATACAGCAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074510.4
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp TCCTTTGGTAGTCCCCCTGAGGTGTTCGGTAATCCGTaGTTAAGGTCTGGGACAGTTCTGTCATCGCCTGAG +
Preference number: 6 (lower is better)
Translates to: SFGSPPEVFGNP*LRSGTVLSSPE
Trigger: CTCAGGCGATGACAGAACTGTCCCAGACCTTAACAACGGATTACCGAACACCTCAGGGGGACTACCAAAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp TCTGGCAATGGGGTTCTGTTGAGCTGTGGCATCCTGTaGGACATAAGCTACCTGGGCTGGGTCTGTAAACAG +
Preference number: 6 (lower is better)
Translates to: SGNGVLLSCGIL*DISYLGWVCKQ
Trigger: CTGTTTACAGACCCAGCCCAGGTAGCTTATGTCCAACAGGATGCCACAGCTCAACAGAACCCCATTGCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS CAA 90 bp ATGGGATGCAAGGGGCCATGCTTCGGGCACACGGAAGAATGTGCATaGTTACACTCCTCACACCCTGCAAGAGAAAGCGAGCTTAAAGAG +
Preference number: 6 (lower is better)
Translates to: MGCKGPCFGHTEECA*LHSSHPARESELKE
Trigger: CTCTTTAAGCTCGCTTTCTCTTGCAGGGTGTGAGGAGTGTAACAATGCACATTCTTCCGTGTGCCCGAAGCATGGCCCCTTGCATCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074510.4
CDS CAA 90 bp GATGCGGTCAGCTTTCTTGGCCTCCCTCTCGGGGTTATGCATCCTTaGCATGTGCTCTCGGAGTTTGTCTTTTCGCTTAAACTGCTTCCC +
Preference number: 6 (lower is better)
Translates to: DAVSFLGLPLGVMHP*HVLSEFVFSLKLLP
Trigger: GGGAAGCAGTTTAAGCGAAAAGACAAACTCCGAGAGCACATGCAAAGGATGCATAACCCCGAGAGGGAGGCCAAGAAAGCTGACCGCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS TCA 72 bp CTCATCGTGAGAATTAAGATGCTGCTGCAGCTGCTCTaGGCTGATAAACCGCCGATTGCACTCATAGCACGG +
Preference number: 6 (lower is better)
Translates to: LIVRIKMLLQLL*ADKPPIALIAR
Trigger: CCGTGCTATGAGTGCAATCGGCGGTTTATCAGCTCAGAGCAGCTGCAGCAGCATCTTAATTCTCACGATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS TCA 72 bp TCCGTTGTTAAGGTCTGGGACAGTTCTGTCATCGCCTaGGTTAGCAGGTCTGTTGTCACCACAGTCTCTCCA +
Preference number: 6 (lower is better)
Translates to: SVVKVWDSSVIA*VSRSVVTTVSP
Trigger: TGGAGAGACTGTGGTGACAACAGACCTGCTAACTCAGGCGATGACAGAACTGTCCCAGACCTTAACAACGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp GTCATGGATTTTCTGATTCACGAACTCAGCGTAGGATaGAGCGTACCACACCTTCAGTTCCTGCTTGGGCTC +
Preference number: 6 (lower is better)
Translates to: VMDFLIHELSVG*SVPHLQFLLGL
Trigger: GAGCCCAAGCAGGAACTGAAGGTGTGGTACGCTGCATCCTACGCTGAGTTCGTGAATCAGAAAATCCATGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp ATGCGGTCAGCTTTCTTGGCCTCCCTCTCGGGGTTATaGATCCTTTGCATGTGCTCTCGGAGTTTGTCTTTT +
Preference number: 6 (lower is better)
Translates to: MRSAFLASLSGL*ILCMCSRSLSF
Trigger: AAAAGACAAACTCCGAGAGCACATGCAAAGGATGCATAACCCCGAGAGGGAGGCCAAGAAAGCTGACCGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp CCTTTTATAGGAAAGAGCCCTAATCATCACCCTGGCTaGCAGGCAGCTGTGGATCCAGTTCTGTACCTTCAG +
Preference number: 6 (lower is better)
Translates to: PFIGKSPNHHPG*QAAVDPVLYLQ
Trigger: CTGAAGGTACAGAACTGGATCCACAGCTGCCTGCCAGCCAGGGTGATGATTAGGGCTCTTTCCTATAAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS CAA 72 bp GAAAAAGGTGCTGACCTGTTGAGCTGTGGCATCCTGTaGGACATAAGCTACCTGGGCTGGGTCTGTAAACAG +
Preference number: 6 (lower is better)
Translates to: EKGADLLSCGIL*DISYLGWVCKQ
Trigger: CTGTTTACAGACCCAGCCCAGGTAGCTTATGTCCAACAGGATGCCACAGCTCAACAGGTCAGCACCTTTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074510.4
CDS CAA 90 bp TTAAGGTCTGGGACAGTTCTGTCATCGCCTGAGTTAGCAGGTCTGTaGTCACCACAGTCTCTCCAGTGGCACTATCTGTCGTTAAGACAG +
Preference number: 6 (lower is better)
Translates to: LRSGTVLSSPELAGL*SPQSLQWHYLSLRQ
Trigger: CTGTCTTAACGACAGATAGTGCCACTGGAGAGACTGTGGTGACAACAGACCTGCTAACTCAGGCGATGACAGAACTGTCCCAGACCTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 90 bp ACCACTGTCTGTGATCACAAACTGACCTGGGGGCAGTGTCATCATTaGAATTTCAGATGCGGACTCATGGCTGGTATCTCCAGCAGACAC +
Preference number: 6 (lower is better)
Translates to: TTVCDHKLTWGQCHH*NFRCGLMAGISSRH
Trigger: GTGTCTGCTGGAGATACCAGCCATGAGTCCGCATCTGAAATTCAAATGATGACACTGCCCCCAGGTCAGTTTGTGATCACAGACAGTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074510.4
CDS TCA 72 bp CCTCTAGTCCTGGTAAACACGTCCAGTTTCTCATCGTaGGAATTAAGATGCTGCTGCAGCTGCTCTGAGCTG +
Preference number: 6 (lower is better)
Translates to: PLVLVNTSSFSS*ELRCCCSCSEL
Trigger: CAGCTCAGAGCAGCTGCAGCAGCATCTTAATTCTCACGATGAGAAACTGGACGTGTTTACCAGGACTAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp TTGGCCTCCCTCTCGGGGTTATGCATCCTTTGCATGTaGTCTCGGAGTTTGTCTTTTCGCTTAAACTGCTTC +
Preference number: 6 (lower is better)
Translates to: LASLSGLCILCM*SRSLSFRLNCF
Trigger: GAAGCAGTTTAAGCGAAAAGACAAACTCCGAGAGCACATGCAAAGGATGCATAACCCCGAGAGGGAGGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp GCTTTCTTGGCCTCCCTCTCGGGGTTATGCATCCTTTaGATGTGCTCTCGGAGTTTGTCTTTTCGCTTAAAC +
Preference number: 6 (lower is better)
Translates to: AFLASLSGLCIL*MCSRSLSFRLN
Trigger: GTTTAAGCGAAAAGACAAACTCCGAGAGCACATGCAAAGGATGCATAACCCCGAGAGGGAGGCCAAGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp AACAAAGTGCACCTGTGCAGTGCTCTGTTCATGGTCTaGAGACGTTGGCCACACATGAGCGCTTTCATCTTT +
Preference number: 6 (lower is better)
Translates to: NKVHLCSALFMV*RRWPHMSAFIF
Trigger: AAAGATGAAAGCGCTCATGTGTGGCCAACGTCTGCAGACCATGAACAGAGCACTGCACAGGTGCACTTTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117389.8
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp GCTCAGCTCCTGGGTGGTTCTTCAGAATGTGGGCTTTaGGCTTGCTGGCGCTCTTATAAACCTTATCACAAT +
Preference number: 6 (lower is better)
Translates to: AQLLGGSSECGL*ACWRSYKPYHN
Trigger: ATTGTGATAAGGTTTATAAGAGCGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCACCCAGGAGCTGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS CCA 72 bp TGGTGTGTGGATGGTGTTGGGAAGCTGGGCATACTCTaGGTGTTTCTTTCGAATGTGTTGCACCATCTTGGT +
Preference number: 6 (lower is better)
Translates to: WCVDGVGKLGIL*VFLSNVLHHLG
Trigger: ACCAAGATGGTGCAACACATTCGAAAGAAACACCCAGAGTATGCCCAGCTTCCCAACACCATCCACACACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp TCGGGGTTATGCATCCTTTGCATGTGCTCTCGGAGTTaGTCTTTTCGCTTAAACTGCTTCCCGCAGGTGGAA +
Preference number: 6 (lower is better)
Translates to: SGLCILCMCSRS*SFRLNCFPQVE
Trigger: TTCCACCTGCGGGAAGCAGTTTAAGCGAAAAGACAAACTCCGAGAGCACATGCAAAGGATGCATAACCCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 90 bp TATACTGAATCCTTTGGTAGTCCCCCTGAGGTGTTCGGTAATCCGTaGTTAAGGTCTGGGACAGTTCTGTCATCGCCTGAGTTAGCAGGT +
Preference number: 6 (lower is better)
Translates to: YTESFGSPPEVFGNP*LRSGTVLSSPELAG
Trigger: ACCTGCTAACTCAGGCGATGACAGAACTGTCCCAGACCTTAACAACGGATTACCGAACACCTCAGGGGGACTACCAAAGGATTCAGTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp CTCCTGGGTGGTTCTTCAGAATGTGGGCTTTGCGCTTaGTGGCGCTCTTATAAACCTGCAGGGTTAAATATT +
Preference number: 6 (lower is better)
Translates to: LLGGSSECGLCA*WRSYKPAGLNI
Trigger: AATATTTAACCCTGCAGGTTTATAAGAGCGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCACCCAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074510.4
ENSMUST00000215847.2
CDS GCA 72 bp AGCTGGGCATACTCTGGGTGTTTCTTTCGAATGTGTTaGACCATCTTGGTCTTGCTGCTATACTGCTTGGAG +
Preference number: 6 (lower is better)
Translates to: SWAYSGCFFRMC*TILVLLLYCLE
Trigger: CTCCAAGCAGTATAGCAGCAAGACCAAGATGGTGCAACACATTCGAAAGAAACACCCAGAGTATGCCCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS GCA 72 bp CTCCTGGGTGGTTCTTCAGAATGTGGGCTTTGCGCTTaGTGGCGCTCTTATAAACCTTATCACAATACTGAC +
Preference number: 6 (lower is better)
Translates to: LLGGSSECGLCA*WRSYKPYHNTD
Trigger: GTCAGTATTGTGATAAGGTTTATAAGAGCGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCACCCAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS CCA 72 bp GTGTCATCATTTGAATTTCAGATGCGGACTCATGGCTaGTATCTCCAGCAGACACAGCAGAGTAACCACGGA +
Preference number: 6 (lower is better)
Translates to: VSSFEFQMRTHG*YLQQTQQSNHG
Trigger: TCCGTGGTTACTCTGCTGTGTCTGCTGGAGATACCAGCCATGAGTCCGCATCTGAAATTCAAATGATGACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074510.4
CDS CAA 72 bp AGCTTTCTTGGCCTCCCTCTCGGGGTTATGCATCCTTaGCATGTGCTCTCGGAGTTTGTCTTTTCGCTTAAA +
Preference number: 6 (lower is better)
Translates to: SFLGLPLGVMHP*HVLSEFVFSLK
Trigger: TTTAAGCGAAAAGACAAACTCCGAGAGCACATGCAAAGGATGCATAACCCCGAGAGGGAGGCCAAGAAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp TGTGATCACAAACTGACCTGGGGGCAGTGTCATCATTaGAATTTCAGATGCGGACTCATGGCTGGTATCTCC +
Preference number: 6 (lower is better)
Translates to: CDHKLTWGQCHH*NFRCGLMAGIS
Trigger: GGAGATACCAGCCATGAGTCCGCATCTGAAATTCAAATGATGACACTGCCCCCAGGTCAGTTTGTGATCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074510.4
CDS CAA 90 bp CAGCGTACCACACCTTCAGTTCCTGCTTGGGCTCCACGTTCTTTATaGTTGTGTAATACACATGGTGGCCATATTGGTAAGCTACCAGGT +
Preference number: 6 (lower is better)
Translates to: QRTTPSVPAWAPRSL*LCNTHGGHIGKLPG
Trigger: ACCTGGTAGCTTACCAATATGGCCACCATGTGTATTACACAACAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTGTGGTACGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 90 bp CGTACCACACCTTCAGTTCCTGCTTGGGCTCCACGTTCTTTATTGTaGTGTAATACACATGGTGGCCATATTGGTAAGCTACCAGGTTCT +
Preference number: 6 (lower is better)
Translates to: RTTPSVPAWAPRSLL*CNTHGGHIGKLPGS
Trigger: AGAACCTGGTAGCTTACCAATATGGCCACCATGTGTATTACACAACAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTGTGGTACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp CGTAGGATGCAGCGTACCACACCTTCAGTTCCTGCTTaGGCTCCACGTTCTTTATTGTTGTGTAATACACAT +
Preference number: 6 (lower is better)
Translates to: RRMQRTTPSVPA*APRSLLLCNTH
Trigger: ATGTGTATTACACAACAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTGTGGTACGCTGCATCCTACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CCA 72 bp CTGGGTGGTTCTTCAGAATGTGGGCTTTGCGCTTGCTaGCGCTCTTATAAACCTTATCACAATACTGACAGA +
Preference number: 6 (lower is better)
Translates to: LGGSSECGLCAC*RSYKPYHNTDR
Trigger: TCTGTCAGTATTGTGATAAGGTTTATAAGAGCGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCACCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215499.2
CDS CAA 72 bp AAGCTGGGCATACTCTGGGTGTTTCTTTCGAATGTGTaGCACCATCTTGGTCTTGCTGCTATACTGCTTGGA +
Preference number: 6 (lower is better)
Translates to: KLGILWVFLSNV*HHLGLAAILLG
Trigger: TCCAAGCAGTATAGCAGCAAGACCAAGATGGTGCAACACATTCGAAAGAAACACCCAGAGTATGCCCAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 90 bp TCCAGTTCTGTACCTTCAGTTCCTGCTTGGGCTCCACGTTCTTTATaGTTGTGTAATACACATGGTGGCCATATTGGTAAGCTACCAGGT +
Preference number: 6 (lower is better)
Translates to: SSSVPSVPAWAPRSL*LCNTHGGHIGKLPG
Trigger: ACCTGGTAGCTTACCAATATGGCCACCATGTGTATTACACAACAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTACAGAACTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS CAA 90 bp AGTTCTGTACCTTCAGTTCCTGCTTGGGCTCCACGTTCTTTATTGTaGTGTAATACACATGGTGGCCATATTGGTAAGCTACCAGGTTCT +
Preference number: 6 (lower is better)
Translates to: SSVPSVPAWAPRSLL*CNTHGGHIGKLPGS
Trigger: AGAACCTGGTAGCTTACCAATATGGCCACCATGTGTATTACACAACAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTACAGAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8
CDS CAA 72 bp ACACCTTCAGTTCCTGCTTGGGCTCCACGTTCTTTATaGTTGTGTAATACACATGGTGGCCATATTGGTAAG +
Preference number: 6 (lower is better)
Translates to: TPSVPAWAPRSL*LCNTHGGHIGK
Trigger: CTTACCAATATGGCCACCATGTGTATTACACAACAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074510.4
ENSMUST00000215499.2
ENSMUST00000215847.2
CDS CAA 72 bp GTACCTTCAGTTCCTGCTTGGGCTCCACGTTCTTTATaGTTGTGTAATACACATGGTGGCCATATTGGTAAG +
Preference number: 6 (lower is better)
Translates to: VPSVPAWAPRSL*LCNTHGGHIGK
Trigger: CTTACCAATATGGCCACCATGTGTATTACACAACAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117389.8