Pregenerated sensors for PRCD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075410Ensembl transcript IDs: ENSMUST00000116318.3, ENSMUST00000148484.9, ENSMUST00000178875.8
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGTAGAGACGCGATGCTTGGACTTGCCACGGCCGTCTGGAATCTGTaGGGCTCCCCTCAGAGCAAGAGCCAAATCCCTCTGAGGATGGGC | + |
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Preference number: 1 (lower is better) Translates to: GRDAMLGLATAVWNL*GSPQSKSQIPLRMG Trigger: GCCCATCCTCAGAGGGATTTGGCTCTTGCTCTGAGGGGAGCCTCACAGATTCCAGACGGCCGTGGCAAGTCCAAGCATCGCGTCTCTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR GCA 90 bp | AAACAACAGCCTCTCTTCTGGCTCTGGGACATGGTAGAGACGCGATaGTTGGACTTGCCACGGCCGTCTGGAATCTGTGAGGCTCCCCTC | + |
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Preference number: 1 (lower is better) Translates to: KQQPLFWLWDMVETR*LDLPRPSGICEAPL Trigger: GAGGGGAGCCTCACAGATTCCAGACGGCCGTGGCAAGTCCAAGCATCGCGTCTCTACCATGTCCCAGAGCCAGAAGAGAGGCTGTTGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR CCA 90 bp | GGGAATTCTTCTTGCCTTTCCAAACAACAGCCTCTCTTCTGGCTCTaGGACATGGTAGAGACGCGATGCTTGGACTTGCCACGGCCGTCT | + |
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Preference number: 1 (lower is better) Translates to: GNSSCLSKQQPLFWL*DMVETRCLDLPRPS Trigger: AGACGGCCGTGGCAAGTCCAAGCATCGCGTCTCTACCATGTCCCAGAGCCAGAAGAGAGGCTGTTGTTTGGAAAGGCAAGAAGAATTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR CCA 90 bp | AGTTTGGGGAATTCTTCTTGCCTTTCCAAACAACAGCCTCTCTTCTaGCTCTGGGACATGGTAGAGACGCGATGCTTGGACTTGCCACGG | + |
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Preference number: 1 (lower is better) Translates to: SLGNSSCLSKQQPLF*LWDMVETRCLDLPR Trigger: CCGTGGCAAGTCCAAGCATCGCGTCTCTACCATGTCCCAGAGCCAGAAGAGAGGCTGTTGTTTGGAAAGGCAAGAAGAATTCCCCAAACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR CCA 90 bp | ACTGTTCCTCCTCCATCTTGTCTACAATACAATTCTGGCCAAGTTTaGGGAATTCTTCTTGCCTTTCCAAACAACAGCCTCTCTTCTGGC | + |
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Preference number: 1 (lower is better) Translates to: TVPPPSCLQYNSGQV*GILLAFPNNSLSSG Trigger: GCCAGAAGAGAGGCTGTTGTTTGGAAAGGCAAGAAGAATTCCCCAAACTTGGCCAGAATTGTATTGTAGACAAGATGGAGGAGGAACAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR GCA 90 bp | ATCTTGTCTACAATACAATTCTGGCCAAGTTTGGGGAATTCTTCTTaGCTTTCCAAACAACAGCCTCTCTTCTGGCTCTGGGACATGGTA | + |
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Preference number: 1 (lower is better) Translates to: ILSTIQFWPSLGNSS*LSKQQPLFWLWDMV Trigger: TACCATGTCCCAGAGCCAGAAGAGAGGCTGTTGTTTGGAAAGGCAAGAAGAATTCCCCAAACTTGGCCAGAATTGTATTGTAGACAAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR-3UTR GCA 90 bp | CTTCTGGCTCTGGGACATGGTAGAGACGCGATGCTTGGACTTGCCACGGCCGTCGTTTTCTTTCCTCCCTaGCTCCGCTTCCAGCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: LLALGHGRDAMLGLATAVVFFPP*LRFQPH Trigger: GTGGGGCTGGAAGCGGAGGCAGGGAGGAAAGAAAAC...GACGGCCGTGGCAAGTCCAAGCATCGCGTCTCTACCATGTCCCAGAGCCAGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR CAA 90 bp | CAACAGCCTCTCTTCTGGCTCTGGGACATGGTAGAGACGCGATGCTaGGACTTGCCACGGCCGTCTGGAATCTGTGAGGCTCCCCTCAGA | + |
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Preference number: 2 (lower is better) Translates to: QQPLFWLWDMVETRC*DLPRPSGICEAPLR Trigger: TCTGAGGGGAGCCTCACAGATTCCAGACGGCCGTGGCAAGTCCAAGCATCGCGTCTCTACCATGTCCCAGAGCCAGAAGAGAGGCTGTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR-3UTR CCA 90 bp | GAATCTGTGAGGCTCCCCTCAGAGCAAGAGCCAAATCCCTCTGAGGATGGGCTTCACCATCTTCCTAGATaGGAGGTGAACCAGGACTCC | + |
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Preference number: 2 (lower is better) Translates to: ESVRLPSEQEPNPSEDGLHHLPR*EVNQDS Trigger: GGAGTCCTGGTTCACCTCCCATCTAGGAAGATGGTG...AAGCCCATCCTCAGAGGGATTTGGCTCTTGCTCTGAGGGGAGCCTCACAGATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116318.3 ENSMUST00000148484.9 |
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| 3UTR CAA 90 bp | CATCTTGTCTACAATACAATTCTGGCCAAGTTTGGGGAATTCTTCTaGCCTTTCCAAACAACAGCCTCTCTTCTGGCTCTGGGACATGGT | + |
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Preference number: 2 (lower is better) Translates to: HLVYNTILAKFGEFF*PFQTTASLLALGHG Trigger: ACCATGTCCCAGAGCCAGAAGAGAGGCTGTTGTTTGGAAAGGCAAGAAGAATTCCCCAAACTTGGCCAGAATTGTATTGTAGACAAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR-3UTR CCA 90 bp | ATCTTGTCTACAATACAATTCTGGCCAAGTTTGGGGAATTCTTCTTGCCTTTCCCAACAGCCTCTCTTCTaGCTCTGGGACATGGTAGAG | + |
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Preference number: 2 (lower is better) Translates to: ILSTIQFWPSLGNSSCLSQQPLF*LWDMVE Trigger: CTCTACCATGTCCCAGAGCCAGAAGAGAGGCTGTTG...GGAAAGGCAAGAAGAATTCCCCAAACTTGGCCAGAATTGTATTGTAGACAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR TCA 72 bp | CGCTTCCAGCCCCACACCATCTTCCTAGATGGGAGGTaGACCAGGACTCCAGCTGTCAGGGCCGACGGGCCG | + |
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Preference number: 3 (lower is better) Translates to: RFQPHTIFLDGR*TRTPAVRADGP Trigger: CGGCCCGTCGGCCCTGACAGCTGGAGTCCTGGTTCACCTCCCATCTAGGAAGATGGTGTGGGGCTGGAAGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116318.3 ENSMUST00000148484.9 |
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| 3UTR CCA 72 bp | CTGCCTCCGCTTCCAGCCCCACACCATCTTCCTAGATaGGAGGTGAACCAGGACTCCAGCTGTCAGGGCCGA | + |
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Preference number: 3 (lower is better) Translates to: LPPLPAPHHLPR*EVNQDSSCQGR Trigger: TCGGCCCTGACAGCTGGAGTCCTGGTTCACCTCCCATCTAGGAAGATGGTGTGGGGCTGGAAGCGGAGGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116318.3 ENSMUST00000148484.9 |
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| 3UTR TCA 72 bp | GCGATGCTTGGACTTGCCACGGCCGTCTGGAATCTGTaGGGCTCCCCTCAGAGCAAGAGCCAAATCCCTCTG | + |
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Preference number: 3 (lower is better) Translates to: AMLGLATAVWNL*GSPQSKSQIPL Trigger: CAGAGGGATTTGGCTCTTGCTCTGAGGGGAGCCTCACAGATTCCAGACGGCCGTGGCAAGTCCAAGCATCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR GCA 72 bp | CCTCTCTTCTGGCTCTGGGACATGGTAGAGACGCGATaGTTGGACTTGCCACGGCCGTCTGGAATCTGTGAG | + |
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Preference number: 3 (lower is better) Translates to: PLFWLWDMVETR*LDLPRPSGICE Trigger: CTCACAGATTCCAGACGGCCGTGGCAAGTCCAAGCATCGCGTCTCTACCATGTCCCAGAGCCAGAAGAGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR GCA 72 bp | CACTCAGAGCATCTGCACCAGTGCTTTCACAGGAAGTaGATCTGTGTGCAGGCGCGTTGGAGGCCTTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: HSEHLHQCFHRK*ICVQARWRPSC Trigger: ACAGGAAGGCCTCCAACGCGCCTGCACACAGATGCACTTCCTGTGAAAGCACTGGTGCAGATGCTCTGAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR GCA 72 bp | GCCTCCAAGACACTGGCTGCTTACACTCAGAGCATCTaGACCAGTGCTTTCACAGGAAGTGCATCTGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: ASKTLAAYTQSI*TSAFTGSASVC Trigger: GCACACAGATGCACTTCCTGTGAAAGCACTGGTGCAGATGCTCTGAGTGTAAGCAGCCAGTGTCTTGGAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR CCA 72 bp | TCTTGCCTTTCCAAACAACAGCCTCTCTTCTGGCTCTaGGACATGGTAGAGACGCGATGCTTGGACTTGCCA | + |
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Preference number: 3 (lower is better) Translates to: SCLSKQQPLFWL*DMVETRCLDLP Trigger: TGGCAAGTCCAAGCATCGCGTCTCTACCATGTCCCAGAGCCAGAAGAGAGGCTGTTGTTTGGAAAGGCAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR CCA 72 bp | TGCTTTCACAGGAAGTGCATCTGTGTGCAGGCGCGTTaGAGGCCTTCCTGTAAACTGTTCCTCCTCCATCTT | + |
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Preference number: 3 (lower is better) Translates to: CFHRKCICVQAR*RPSCKLFLLHL Trigger: AAGATGGAGGAGGAACAGTTTACAGGAAGGCCTCCAACGCGCCTGCACACAGATGCACTTCCTGTGAAAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR CCA 72 bp | AATTCTTCTTGCCTTTCCAAACAACAGCCTCTCTTCTaGCTCTGGGACATGGTAGAGACGCGATGCTTGGAC | + |
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Preference number: 3 (lower is better) Translates to: NSSCLSKQQPLF*LWDMVETRCLD Trigger: GTCCAAGCATCGCGTCTCTACCATGTCCCAGAGCCAGAAGAGAGGCTGTTGTTTGGAAAGGCAAGAAGAATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR TCA 72 bp | TTGGACTTTATTAATAAGGTCATGAAGGAGGGTTGCTaGTGCCTCCAAGACACTGGCTGCTTACACTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: LDFINKVMKEGC*CLQDTGCLHSE Trigger: CTCTGAGTGTAAGCAGCCAGTGTCTTGGAGGCATCAGCAACCCTCCTTCATGACCTTATTAATAAAGTCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR TCA 72 bp | TTGCGAAGGGAATCTTGGACTTTATTAATAAGGTCATaGAGGAGGGTTGCTGATGCCTCCAAGACACTGGCT | + |
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Preference number: 3 (lower is better) Translates to: LRRESWTLLIRS*RRVADASKTLA Trigger: AGCCAGTGTCTTGGAGGCATCAGCAACCCTCCTTCATGACCTTATTAATAAAGTCCAAGATTCCCTTCGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116318.3 ENSMUST00000178875.8 |
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| 3UTR GCA 72 bp | ACAATACAATTCTGGCCAAGTTTGGGGAATTCTTCTTaGCTTTCCAAACAACAGCCTCTCTTCTGGCTCTGG | + |
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Preference number: 3 (lower is better) Translates to: TIQFWPSLGNSS*LSKQQPLFWLW Trigger: CCAGAGCCAGAAGAGAGGCTGTTGTTTGGAAAGGCAAGAAGAATTCCCCAAACTTGGCCAGAATTGTATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR CCA 72 bp | CCTCCATCTTGTCTACAATACAATTCTGGCCAAGTTTaGGGAATTCTTCTTGCCTTTCCAAACAACAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: PPSCLQYNSGQV*GILLAFPNNSL Trigger: GAGGCTGTTGTTTGGAAAGGCAAGAAGAATTCCCCAAACTTGGCCAGAATTGTATTGTAGACAAGATGGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| CDS-3UTR TCA 90 bp | CCTCCGCTTCCAGCCCCACACCATCTTCCTAGATGGGAGGTGAACCAGGACTCCACAGCATGGCCAAGCTaGACAGGAAGAGGGTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: PPLPAPHHLPRWEVNQDSTAWPS*TGRGWC Trigger: GCACCACCCTCTTCCTGTTCAGCTTGGCCATGCTGT...GGAGTCCTGGTTCACCTCCCATCTAGGAAGATGGTGTGGGGCTGGAAGCGGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116318.3 ENSMUST00000148484.9 |
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| 3UTR CAA 72 bp | CTCTTCTGGCTCTGGGACATGGTAGAGACGCGATGCTaGGACTTGCCACGGCCGTCTGGAATCTGTGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: LFWLWDMVETRC*DLPRPSGICEA Trigger: AGCCTCACAGATTCCAGACGGCCGTGGCAAGTCCAAGCATCGCGTCTCTACCATGTCCCAGAGCCAGAAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| CDS-3UTR TCA 90 bp | CAGAGCAAGAGCCAAATCCCTCTGAGGATGGGCTTCTCCATGACCGTTTCTCCCTTGAAGGTCTGTGTCTaGGCCGCTGCCCACGACTGT | + |
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Preference number: 4 (lower is better) Translates to: QSKSQIPLRMGFSMTVSPLKVCV*AAAHDC Trigger: ACAGTCGTGGGCAGCGGCTCAGACACAGACCTTCAA...GGGAGAAACGGTCATGGAGAAGCCCATCCTCAGAGGGATTTGGCTCTTGCTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116318.3 ENSMUST00000148484.9 |
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| CDS-3UTR TCA 90 bp | AGCCAAATCCCTCTGAGGATGGGCTTCTCCATGACCGTTTCTCCCGTTTTCTTTTTGAAGGTCTGTGTCTaGGCCGCTGCCCACGACTGT | + |
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Preference number: 4 (lower is better) Translates to: SQIPLRMGFSMTVSPVFFLKVCV*AAAHDC Trigger: ACAGTCGTGGGCAGCGGCTCAGACACAGACCTTCAA...AAAGAAAACGGGAGAAACGGTCATGGAGAAGCCCATCCTCAGAGGGATTTGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000116318.3 ENSMUST00000148484.9 |
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| CDS-3UTR TCA 90 bp | TCCATCTTGTCTACAATACAATTCTGGCCAAGTTTGGGGAATTCTTCTTGCCTTACAGCATGGCCAAGCTaGACAGGAAGAGGGTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: SILSTIQFWPSLGNSSCLTAWPS*TGRGWC Trigger: GCACCACCCTCTTCCTGTTCAGCTTGGCCATGCTGT...AAGGCAAGAAGAATTCCCCAAACTTGGCCAGAATTGTATTGTAGACAAGATGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR CAA 72 bp | GTTGGAGGCCTTCCTGTAAACTGTTCCTCCTCCATCTaGTCTACAATACAATTCTGGCCAAGTTTGGGGAAT | + |
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Preference number: 4 (lower is better) Translates to: VGGLPVNCSSSI*STIQFWPSLGN Trigger: ATTCCCCAAACTTGGCCAGAATTGTATTGTAGACAAGATGGAGGAGGAACAGTTTACAGGAAGGCCTCCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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| 3UTR CAA 72 bp | TCCTCCATCTTGTCTACAATACAATTCTGGCCAAGTTaGGGGAATTCTTCTTGCCTTTCCAAACAACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: SSILSTIQFWPS*GNSSCLSKQQP Trigger: AGGCTGTTGTTTGGAAAGGCAAGAAGAATTCCCCAAACTTGGCCAGAATTGTATTGTAGACAAGATGGAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116318.3 |
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