Pregenerated sensors for PRCC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004895Ensembl transcript IDs: ENSMUST00000005015.10
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTAAGAAAAATCTATCAAATATGTTCCTTCTCCAGAGCTAAGGGCTaGGTCCTCAGGGTAGAGGTCCTGGACTTAGAGCAGCTGGGGTCC | + |
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Preference number: 1 (lower is better) Translates to: LRKIYQICSFSRAKG*VLRVEVLDLEQLGS Trigger: GGACCCCAGCTGCTCTAAGTCCAGGACCTCTACCCTGAGGACTCAGCCCTTAGCTCTGGAGAAGGAACATATTTGATAGATTTTTCTTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| 3UTR-3UTR GCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTGGGGCTGGGCCTCTGTaGCAACGGAGATCCTGGGCC | + |
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Preference number: 2 (lower is better) Translates to: KMVGEFTISSLPAARSTTGAGPL*QRRSWA Trigger: GGCCCAGGATCTCCGTTGGCACAGAGGCCCAGCCCC...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| 3UTR TCA 72 bp | ATCTATCAAATATGTTCCTTCTCCAGAGCTAAGGGCTaGGTCCTCAGGGTAGAGGTCCTGGACTTAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: IYQICSFSRAKG*VLRVEVLDLEQ Trigger: CTGCTCTAAGTCCAGGACCTCTACCCTGAGGACTCAGCCCTTAGCTCTGGAGAAGGAACATATTTGATAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR TCA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTCAGCTGGGGGCAGACTaGGCCCAGGGCCTTGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: RRSSGQRSSLSSPAQKGAQLGAD*AQGLEA Trigger: CGCCTCAAGGCCCTGGGCTCAGTCTGCCCCCAGCTG...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTGACACCGCCCACAGCTaGGGGCAGACTGAGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RRSSGQRSSLSSPAQKGADTAHS*GQTEPR Trigger: CCTGGGCTCAGTCTGCCCCCAGCTGTGGGCGGTGTC...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTGCAAGGCCGGGCCTTTaGGTGCAGGAAGAGAAGCGA | + |
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Preference number: 4 (lower is better) Translates to: RRSSGQRSSLSSPAQKGAARPGL*VQEEKR Trigger: TCGCTTCTCTTCCTGCACCCAAAGGCCCGGCCTTGC...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR TCA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTTTGGTCATCCACTGCTaGGCCCCACTGAGTTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: RRSSGQRSSLSSPAQKGALVIHC*APLSWS Trigger: TGACCAACTCAGTGGGGCTCAGCAGTGGATGACCAA...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACGTCTGGGGTCTCCGGTaGGCGGGGGCAGCAGGAGCG | + |
|
Preference number: 4 (lower is better) Translates to: KNGGRVHHFITPCCKEHNVWGLR*AGAAGA Trigger: CGCTCCTGCTGCCCCCGCCCACCGGAGACCCCAGAC...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACGAGGCGGCTGCAGTCTaGGGTCTCCGGTGGGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: KNGGRVHHFITPCCKEHNEAAAV*GLRWAG Trigger: CCCCGCCCACCGGAGACCCCAGACTGCAGCCGCCTC...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTTTCCGGGAGAAGGCATaGGGCAGGAGCAACCTGTTA | + |
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Preference number: 4 (lower is better) Translates to: RRSSGQRSSLSSPAQKGAFREKA*GRSNLL Trigger: TAACAGGTTGCTCCTGCCCCATGCCTTCTCCCGGAA...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTCCTGTGTTATCTGCTTaGTCACCTGCAGGGCAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: RRSSGQRSSLSSPAQKGAPVLSA*SPAGQH Trigger: GTGCTGCCCTGCAGGTGACCAAGCAGATAACACAGG...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR GCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTAGCGGCGGAGGCGGCTaGAGTCTGGGGTCTCCGGTG | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTSGGGG*SLGSPV Trigger: CACCGGAGACCCCAGACTGCAGCCGCCTCCGCCGCT...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTGCTCACTCCTGCAGGTaGCGGGAAGCCGCCCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTAHSCR*REAAQA Trigger: GGCCTGGGCGGCTTCCCGCCACCTGCAGGAGTGAGC...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR GCA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACAGCAGGGCTCACTCCTaGAGGTGGCGGGAAGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: KNGGRVHHFITPCCKEHNSRAHS*RWREAA Trigger: GGCGGCTTCCCGCCACCTGCAGGAGTGAGCCCTGCT...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACAGGGCCTTGAGGCGATaGCAGCCCCAGCCCCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: KNGGRVHHFITPCCKEHNRALRR*QPQPLS Trigger: GGAGAGGGGCTGGGGCTGCCATCGCCTCAAGGCCCT...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTCCGCTGCTGGCCAGTTaGCTGTTCACCTTTCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: RRSSGQRSSLSSPAQKGAPLLAS*LFTFLF Trigger: AAAAAGAAAGGTGAACAGCCAACTGGCCAGCAGCGG...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR TCA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTACTGAGCTTGTTTTCTaGCCAGGTGTTCTTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: RRSSGQRSSLSSPAQKGATELVF*PGVLQL Trigger: GAGCTGAAGAACACCTGGTCAGAAAACAAGCTCAGT...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTTCAGGGGCAATTTCCTaGGGAGGGACCAGAGCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTSGAIS*GGTRAG Trigger: CCCGGCTCTGGTCCCTCCCCAGGAAATTGCCCCTGA...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR TCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTGGGTCTGCCGGCGACTaGGCTTGTTTTCTGACCAGG | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTGSAGD*ACFLTR Trigger: CCTGGTCAGAAAACAAGCTCAGTCGCCGGCAGACCC...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR GCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTGGCCGGGCCTTTGGGTaGAGGAAGAGAAGCGAACAG | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTGRAFG*RKRSEQ Trigger: CTGTTCGCTTCTCTTCCTGCACCCAAAGGCCCGGCC...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR GCA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACCAGAGCCGGGTCCGGTaGAGGATAGTAGCCACCACT | + |
|
Preference number: 4 (lower is better) Translates to: KNGGRVHHFITPCCKEHNQSRVR*RIVATT Trigger: AGTGGTGGCTACTATCCTGCACCGGACCCGGCTCTG...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR TCA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTCTTGGCAGCAGCCTTaGTGGCAGAGGGTGATGGAG | + |
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Preference number: 4 (lower is better) Translates to: KNGGRVHHFITPCCKEHNSWQQP*WQRVME Trigger: CTCCATCACCCTCTGCCATCAAGGCTGCTGCCAAGA...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR TCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTCTTGATGGCAGAGGGTaGTGGAGTGGTGGTTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTLDGRG*WSGGCG Trigger: ACCACAACCACCACTCCATCACCCTCTGCCATCAAG...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTGACAGGGTAAGGGTATaGCTCAACTCCAGGTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTDRVRV*LNSRWL Trigger: GAGCCACCTGGAGTTGAGCCATACCCTTACCCTGTC...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR GCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTGCTCACTATCGTCGCTaGTGGCATAAGCAACCAGAG | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTAHYRR*WHKQPE Trigger: CTCTGGTTGCTTATGCCAGCAGCGACGATAGTGAGC...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACATCGTCCTGGAAAGCTaGTTCTGGTTCTGTGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: KNGGRVHHFITPCCKEHNIVLES*FWFCAW Trigger: CCAGGCACAGAACCAGAACCAGCTTTCCAGGACGAT...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR TCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTATCTTCCTCAGAATCTaGATCGCCCTTCTGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTIFLRI*IALLQL Trigger: GAGCTGCAGAAGGGCGATTCAGATTCTGAGGAAGAT...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR GCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTTATTTGGCTTGGGTCTaGCGGCGACTGAGCTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTYLAWV*RRLSLF Trigger: AAACAAGCTCAGTCGCCGGCAGACCCAAGCCAAATA...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTCACTATCGTCGCTGCTaGCATAAGCAACCAGAGACA | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTHYRRC*HKQPET Trigger: TGTCTCTGGTTGCTTATGCCAGCAGCGACGATAGTG...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTCAGAGGGTGATGGAGTaGTGGTTGTGGTACCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTQRVME*WLWYPK Trigger: TTTTGGGTACCACAACCACCACTCCATCACCCTCTG...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTTGGCTGCATCGTCCTaGAAAGCTGGTTCTGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: KNGGRVHHFITPCCKEHNLAASS*KAGSGS Trigger: AGAACCAGAACCAGCTTTCCAGGACGATGCAGCCAA...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR TCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTTTTCTCTTCTGTCAGTaGCTTGGTCATCCACTGCTG | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTFLFCQ*LGHPLL Trigger: CAGCAGTGGATGACCAAGTCACTGACAGAAGAGAAA...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTATGGAGTGGTGGTTGTaGTACCCAAAACAGGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTMEWWL*YPKQEQ Trigger: TTGCTCCTGTTTTGGGTACCACAACCACCACTCCAT...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTAAGCACCAGCAGCATTaGCATCGCCATATGTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTKHQQH*HRHMWK Trigger: TTTCCACATATGGCGATGCCAATGCTGCTGGTGCTT...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTATCAGATATGTGATCTaGTGTTTCCTCCGCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTIRYVI*CFLRCW Trigger: CCAGCAGCGGAGGAAACACCAGATCACATATCTGAT...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CCA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTGGCATCGCCATATGTaGAAAACTGATTGTAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: KNGGRVHHFITPCCKEHNWHRHM*KTDCSC Trigger: ACAGCTACAATCAGTTTTCCACATATGGCGATGCCA...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR TCA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTCACCTTTCTTTTTGCTaGAGGACTTCATGGTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: KMVGEFTISSLPAARSTTHLSFC*RTSWFS Trigger: AGAAAACCATGAAGTCCTTCAGCAAAAAGAAAGGTG...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS GCA 90 bp | GGTGGCGGGAAGCCGCCCAGGCCAAAGGGCAGCGGCGGAGGCGGCTaGAGTCTGGGGTCTCCGGTGGGCGGGGGCAGCAGGAGCGGCGGG | + |
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Preference number: 5 (lower is better) Translates to: GGGKPPRPKGSGGGG*SLGSPVGGGSRSGG Trigger: CCCGCCGCTCCTGCTGCCCCCGCCCACCGGAGACCCCAGACTGCAGCCGCCTCCGCCGCTGCCCTTTGGCCTGGGCGGCTTCCCGCCACC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CCA 90 bp | CCCCTCTCCAACTCCCGCAGCTTCAGCAGGGCTCACTCCTGCAGGTaGCGGGAAGCCGCCCAGGCCAAAGGGCAGCGGCGGAGGCGGCTG | + |
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Preference number: 5 (lower is better) Translates to: PLSNSRSFSRAHSCR*REAAQAKGQRRRRL Trigger: CAGCCGCCTCCGCCGCTGCCCTTTGGCCTGGGCGGCTTCCCGCCACCTGCAGGAGTGAGCCCTGCTGAAGCTGCGGGAGTTGGAGAGGGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CCA 90 bp | AAGCTGGTTCTGGTTCTGTGCCTGGAGGCAGCTCTTCAGGGACAGTaGGGACAGGGTAAGGGTATGGCTCAACTCCAGGTGGCTCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: KLVLVLCLEAALQGQ*GQGKGMAQLQVAQP Trigger: AGGCTGAGCCACCTGGAGTTGAGCCATACCCTTACCCTGTCCCCACTGTCCCTGAAGAGCTGCCTCCAGGCACAGAACCAGAACCAGCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTCTCCCTCGGTTCCTCTaGCCCTGTAGCCGCTTAAAT | + |
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Preference number: 5 (lower is better) Translates to: RRSSGQRSSLSSPAQKGALPRFL*PCSRLN Trigger: ATTTAAGCGGCTACAGGGCAAGAGGAACCGAGGGAG...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTGAATCCATATTTGGCTaGGGTCTGCCGGCGACTGAG | + |
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Preference number: 5 (lower is better) Translates to: RRSSGQRSSLSSPAQKGAESIFG*GLPATE Trigger: CTCAGTCGCCGGCAGACCCAAGCCAAATATGGATTC...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS GCA 90 bp | TCCTCGTCACTGTCGTCATCCTCCTGTGTTATCTGCTTGGTCACCTaGAGGGCAGCACTCTTGGCAGCAGCCTTGATGGCAGAGGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: SSSLSSSSCVICLVT*RAALLAAALMAEGD Trigger: ATCACCCTCTGCCATCAAGGCTGCTGCCAAGAGTGCTGCCCTGCAGGTGACCAAGCAGATAACACAGGAGGATGACGACAGTGACGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | CGTAGATCCTCGGGGCAGCGCTCCAGTCTTTCCAGCCCAGCACAGAAAGGAGCTTTGATCTCCACAAAGTaGATTTCCTCTCTCCCTCGG | + |
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Preference number: 5 (lower is better) Translates to: RRSSGQRSSLSSPAQKGALISTK*ISSLPR Trigger: CCGAGGGAGAGAGGAAATCAACTTTGTGGAGATCAA...AGCTCCTTTCTGTGCTGGGCTGGAAAGACTGGAGCGCTGCCCCGAGGATCTACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACCTCTTGGCAGCAGCCTaGATGGCAGAGGGTGATGGA | + |
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Preference number: 5 (lower is better) Translates to: KNGGRVHHFITPCCKEHNLLAAA*MAEGDG Trigger: TCCATCACCCTCTGCCATCAAGGCTGCTGCCAAGAG...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACGTTCGGTTCTCTTCTTaGGCTTGGGAAGGCCCAAGG | + |
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Preference number: 5 (lower is better) Translates to: KNGGRVHHFITPCCKEHNVRFSS*AWEGPR Trigger: CCTTGGGCCTTCCCAAGCCAAAGAAGAGAACCGAAC...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTTGCCGGCGACTGAGCTaGTTTTCTGACCAGGTGTTC | + |
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Preference number: 5 (lower is better) Translates to: KMVGEFTISSLPAARSTTCRRLS*FSDQVF Trigger: GAACACCTGGTCAGAAAACAAGCTCAGTCGCCGGCA...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTGCAAGTGAGGCGGGCTaGGTCTTAGAAGCCAATCTA | + |
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Preference number: 5 (lower is better) Translates to: KMVGEFTISSLPAARSTTASEAG*VLEANL Trigger: TAGATTGGCTTCTAAGACCAAGCCCGCCTCACTTGC...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACGTGATGGAGTGGTGGTaGTGGTACCCAAAACAGGAG | + |
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Preference number: 5 (lower is better) Translates to: KNGGRVHHFITPCCKEHNVMEWW*WYPKQE Trigger: CTCCTGTTTTGGGTACCACAACCACCACTCCATCAC...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACCTGAGCCCCACTGAGTaGGTCATCACCTTTGATCTC | + |
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Preference number: 5 (lower is better) Translates to: KNGGRVHHFITPCCKEHNLSPTE*VITFDL Trigger: GAGATCAAAGGTGATGACCAACTCAGTGGGGCTCAG...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | AAAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTCCGCTGCTGGCCAGTaGGCTGTTCACCTTTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: KNGGRVHHFITPCCKEHNSAAGQ*AVHLSF Trigger: AAAAGAAAGGTGAACAGCCAACTGGCCAGCAGCGGA...GTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CCA 90 bp | GGCTTAGCATCTGAGGAGATATCTGAAGGTTTCCGGGAGAAGGCATaGGGCAGGAGCAACCTGTTAGTCTCTTTCACAGTCAGGTTTTTA | + |
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Preference number: 5 (lower is better) Translates to: GLASEEISEGFREKA*GRSNLLVSFTVRFL Trigger: TAAAAACCTGACTGTGAAAGAGACTAACAGGTTGCTCCTGCCCCATGCCTTCTCCCGGAAACCTTCAGATATCTCCTCAGATGCTAAGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTAGTCAGGTTTTTAGGTaGGGGGAGCAAGGCAGACAA | + |
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Preference number: 5 (lower is better) Translates to: KMVGEFTISSLPAARSTTSQVFR*GEQGRQ Trigger: TTGTCTGCCTTGCTCCCCCAACCTAAAAACCTGACT...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CCA 90 bp | AGTAATCCTGATAATAAGCACCAGCAGCATTGGCATCGCCATATGTaGAAAACTGATTGTAGCTGTAGTCATCCCCAGGCTTCGGCATCC | + |
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Preference number: 5 (lower is better) Translates to: SNPDNKHQQHWHRHM*KTDCSCSHPQASAS Trigger: GGATGCCGAAGCCTGGGGATGACTACAGCTACAATCAGTTTTCCACATATGGCGATGCCAATGCTGCTGGTGCTTATTATCAGGATTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CCA 90 bp | AGTAGCCACCACTGTAGTAATCCTGATAATAAGCACCAGCAGCATTaGCATCGCCATATGTGGAAAACTGATTGTAGCTGTAGTCATCCC | + |
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Preference number: 5 (lower is better) Translates to: SSHHCSNPDNKHQQH*HRHMWKTDCSCSHP Trigger: GGGATGACTACAGCTACAATCAGTTTTCCACATATGGCGATGCCAATGCTGCTGGTGCTTATTATCAGGATTACTACAGTGGTGGCTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTAGTTGGTCATCACCTTaGATCTCCACAAAGTTGATT | + |
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Preference number: 5 (lower is better) Translates to: KMVGEFTISSLPAARSTTSWSSP*ISTKLI Trigger: AATCAACTTTGTGGAGATCAAAGGTGATGACCAACT...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS-3UTR CAA 90 bp | AAAATGGTGGGAGAGTTCACCATTTCATCACTCCCTGCTGCAAGGAGCACAACTTGTTCACCTTTCTTTTaGCTGAAGGACTTCATGGTT | + |
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Preference number: 5 (lower is better) Translates to: KMVGEFTISSLPAARSTTCSPFF*LKDFMV Trigger: AACCATGAAGTCCTTCAGCAAAAAGAAAGGTGAACA...AGTTGTGCTCCTTGCAGCAGGGAGTGATGAAATGGTGAACTCTCCCACCATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS GCA 72 bp | AAGCCGCCCAGGCCAAAGGGCAGCGGCGGAGGCGGCTaGAGTCTGGGGTCTCCGGTGGGCGGGGGCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: KPPRPKGSGGGG*SLGSPVGGGSR Trigger: CCTGCTGCCCCCGCCCACCGGAGACCCCAGACTGCAGCCGCCTCCGCCGCTGCCCTTTGGCCTGGGCGGCTT 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS GCA 72 bp | TGGCTGCATCGTCCTGGAAAGCTGGTTCTGGTTCTGTaGCTGGAGGCAGCTCTTCAGGGACAGTGGGGACAG | + |
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Preference number: 6 (lower is better) Translates to: WLHRPGKLVLVL*LEAALQGQWGQ Trigger: CTGTCCCCACTGTCCCTGAAGAGCTGCCTCCAGGCACAGAACCAGAACCAGCTTTCCAGGACGATGCAGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS TCA 72 bp | GGCAGCACTCTTGGCAGCAGCCTTGATGGCAGAGGGTaGTGGAGTGGTGGTTGTGGTACCCAAAACAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: GSTLGSSLDGRG*WSGGCGTQNRS Trigger: GCTCCTGTTTTGGGTACCACAACCACCACTCCATCACCCTCTGCCATCAAGGCTGCTGCCAAGAGTGCTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS GCA 72 bp | GCAGGTTCATCTTCCTCAGAATCTGAATCGCCCTTCTaGAGCTCCGGCGCCGCTATCCTAACCGGTTCGGTT | + |
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Preference number: 6 (lower is better) Translates to: AGSSSSESESPF*SSGAAILTGSV Trigger: AACCGAACCGGTTAGGATAGCGGCGCCGGAGCTGCAGAAGGGCGATTCAGATTCTGAGGAAGATGAACCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CAA 72 bp | TGTGTTATCTGCTTGGTCACCTGCAGGGCAGCACTCTaGGCAGCAGCCTTGATGGCAGAGGGTGATGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: CVICLVTCRAAL*AAALMAEGDGV Trigger: CACTCCATCACCCTCTGCCATCAAGGCTGCTGCCAAGAGTGCTGCCCTGCAGGTGACCAAGCAGATAACACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS GCA 72 bp | AGCAAGGCAGACAAACCAGTCCCCTCGCCGGATCCCTaGAGGACAACTTTCTTCTTCGCAGGTTCATCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SKADKPVPSPDP*RTTFFFAGSSS Trigger: GGAAGATGAACCTGCGAAGAAGAAAGTTGTCCTGCAGGGATCCGGCGAGGGGACTGGTTTGTCTGCCTTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CAA 90 bp | GGAGTGGTGGTTGTGGTACCCAAAACAGGAGCAAGTGAGGCGGGCTaGGTCTTAGAAGCCAATCTAGAGGGCTTAGCATCTGAGGAGATA | + |
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Preference number: 6 (lower is better) Translates to: GVVVVVPKTGASEAG*VLEANLEGLASEEI Trigger: TATCTCCTCAGATGCTAAGCCCTCTAGATTGGCTTCTAAGACCAAGCCCGCCTCACTTGCTCCTGTTTTGGGTACCACAACCACCACTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CCA 72 bp | TCTGAGGAGATATCTGAAGGTTTCCGGGAGAAGGCATaGGGCAGGAGCAACCTGTTAGTCTCTTTCACAGTC | + |
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Preference number: 6 (lower is better) Translates to: SEEISEGFREKA*GRSNLLVSFTV Trigger: GACTGTGAAAGAGACTAACAGGTTGCTCCTGCCCCATGCCTTCTCCCGGAAACCTTCAGATATCTCCTCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CAA 72 bp | CCACTGAGTTGGTCATCACCTTTGATCTCCACAAAGTaGATTTCCTCTCTCCCTCGGTTCCTCTTGCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: PLSWSSPLISTK*ISSLPRFLLPC Trigger: ACAGGGCAAGAGGAACCGAGGGAGAGAGGAAATCAACTTTGTGGAGATCAAAGGTGATGACCAACTCAGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CAA 90 bp | CCTTTGATCTCCACAAAGTTGATTTCCTCTCTCCCTCGGTTCCTCTaGCCCTGTAGCCGCTTAAATGCTTCATCATCAATGAAGGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: PLISTKLISSLPRFL*PCSRLNASSSMKEA Trigger: TGCCTCCTTCATTGATGATGAAGCATTTAAGCGGCTACAGGGCAAGAGGAACCGAGGGAGAGAGGAAATCAACTTTGTGGAGATCAAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CCA 72 bp | GATAATAAGCACCAGCAGCATTGGCATCGCCATATGTaGAAAACTGATTGTAGCTGTAGTCATCCCCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: DNKHQQHWHRHM*KTDCSCSHPQA Trigger: AGCCTGGGGATGACTACAGCTACAATCAGTTTTCCACATATGGCGATGCCAATGCTGCTGGTGCTTATTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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| CDS CAA 72 bp | TCCACAAAGTTGATTTCCTCTCTCCCTCGGTTCCTCTaGCCCTGTAGCCGCTTAAATGCTTCATCATCAATG | + |
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Preference number: 6 (lower is better) Translates to: STKLISSLPRFL*PCSRLNASSSM Trigger: CATTGATGATGAAGCATTTAAGCGGCTACAGGGCAAGAGGAACCGAGGGAGAGAGGAAATCAACTTTGTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005015.10 |
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