Pregenerated sensors for PRB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067543Ensembl transcript IDs: ENSMUST00000087853.4
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGGGGGCTTCCCTGTaGGGGTGGGCCTGGAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLGASL*GWAWRG Trigger: CCCCCTCCAGGCCCACCCCCACAGGGAAGCCCCCAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR TCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGGCATAGGGGGTCCCTaGGGACCTCCCTGTGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSGIGGP*GPPCGG Trigger: ACCCCCACAGGGAGGTCCTCAGGGACCCCCTATGCC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR TCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGGCCTAGGAGGTCCCTaGGGGCCTCCCTGTTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSGLGGP*GPPCWG Trigger: ACCCCAACAGGGAGGCCCTCAGGGACCTCCTAGGCC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCCTAGGGGGACCCTGTaGGCCTCCCTGTTGGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSPRGTL*ASLLGR Trigger: CCTCCCCAACAGGGAGGCCCACAGGGTCCCCCTAGG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGTGGGGGTGGGCCTaGAGGGGGTGGGCCTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLWGWA*RGWALL Trigger: CAACAAGGCCCACCCCCTCCAGGCCCACCCCCACAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGGGGGCCTCCCTGTaGGGACGGGCCTTGTGGGTT | + |
|
Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLGASL*GRALWV Trigger: AACCCACAAGGCCCGTCCCCACAGGGAGGCCCCCAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR TCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGACATAGGGGGTCCCTaGGGACCTCCCTGTGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSDIGGP*GPPCGG Trigger: ACCCCCACAGGGAGGTCCTCAGGGACCCCCTATGTC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGGGGGCCTCCCTGTaGGGGTGGGCCTTGTTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLGASL*GWALLV Trigger: AACCAACAAGGCCCACCCCCACAGGGAGGCCCCCAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR TCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGGCATAGGGGGTCCCTaGGAACCTCCCTGTGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSGIGGP*EPPCGG Trigger: ACCACCACAGGGAGGTTCTCAGGGACCCCCTATGCC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGGGGGCCTCCCTTTaGGGGTGGGCCTTGTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLGASL*GWALLV Trigger: AACCAACAAGGCCCACCCCCAAAGGGAGGCCCCCAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGTTTCCAGGCTGAGGTaGTCTCTGCTGGGGGCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSVSRLR*SLLGAS Trigger: GGAGGCCCCCAGCAGAGACCACCTCAGCCTGGAAAC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGGGGGCCTCCCTGTaGGGGTGGACCTTGTTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLGASL*GWTLLV Trigger: AACCAACAAGGTCCACCCCCACAGGGAGGCCCCCAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGGAGGCCTCCCTGTaGGGGTGGGCCTTGTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLEASL*GWALLV Trigger: AACCAACAAGGCCCACCCCCACAGGGAGGCCTCCAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTTGGTTACCAGGTCTTaGGGGTCCCTGGGGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLVTRS*GSLGAS Trigger: GGAGGCCCCCAGGGACCCCCAAGACCTGGTAACCAA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGGGGGTGGGCCTTGCTaGTTTCCAGGCCTAGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSGGGPC*FPGLGG Trigger: ACCTCCTAGGCCTGGAAACCAGCAAGGCCCACCCCC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR TCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTGTTGGTTTCCAGGCTaGGGTGGTCTCTGCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSCWFPG*GGLCWG Trigger: CCCCCAGCAGAGACCACCTCAGCCTGGAAACCAACA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR TCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTGTGGGTTTCCAGGCTaGGGAGGTCTCTGCTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSCGFPG*GGLCWR Trigger: CCTCCAGCAGAGACCTCCTCAGCCTGGAAACCCACA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTACCATGGTGGTGTCCTaGGTGAGGAGGGTGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSTMVVS*VRRVLW Trigger: CCACAGCACCCTCCTCACCCAGGACACCACCATGGT...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTGTGGGCCTCCCTGTTaGGGAGGACCATGGTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSCGPPC*GGPWWC Trigger: ACACCACCATGGTCCTCCCCAACAGGGAGGCCCACA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGCCTCCCTGTGGGTGTaGGCCTTGTTGGTTTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSASLWV*ALLVSR Trigger: CCTGGAAACCAACAAGGCCCACACCCACAGGGAGGC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTAGAACTGGGAGGTCTTaGGGGCATTCCTCCAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSRTGRS*GHSSRR Trigger: CCTCCTGGAGGAATGCCCCCAAGACCTCCCAGTTCT...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTAGGAGGGTGCTGTGGTaGTCCCTCTGGTCTATTCAC | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSRRVLW*SLWSIH Trigger: GTGAATAGACCAGAGGGACCACCACAGCACCCTCCT...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGTGAGGAGGGTGCTGTaGTGGTCCCTCTGGTCTATT | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSVRRVL*WSLWSI Trigger: AATAGACCAGAGGGACCACCACAGCACCCTCCTCAC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTACCTCCCTGTGGTGGTaGGCCTTGTTGTTTTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSTSLWW*ALLFSR Trigger: CCTGGAAAACAACAAGGCCCACCACCACAGGGAGGT...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGAGGACCTCCCTTTaGAGGTGGGCCTTGTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLRTSL*RWALLV Trigger: AACCAACAAGGCCCACCTCCAAAGGGAGGTCCTCAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGTTTCCATGCTGGGGTaGGCCTTGATGGTTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSVSMLG*ALMVSW Trigger: CCAGGAAACCATCAAGGCCCACCCCAGCATGGAAAC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTAGAACCTCCCTGTGGTaGTGGGCCTTGTTGTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSRTSLW*WALLFS Trigger: GGAAAACAACAAGGCCCACCACCACAGGGAGGTTCT...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCATTCCTCCAGGAGGTaGTTTTGGAAAATGATGACC | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSHSSRR*FWKMMT Trigger: GGTCATCATTTTCCAAAACCACCTCCTGGAGGAATG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTATTTTCATCAGAACTaGGAGGTCTTGGGGGCATTC | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSYFHQN*EVLGAF Trigger: GAATGCCCCCAAGACCTCCCAGTTCTGATGAAAATA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CCA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTCCAGGAGGTGGTTTTaGAAAATGATGACCATATCC | + |
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Preference number: 4 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSSRRWF*KMMTIS Trigger: GGATATGGTCATCATTTTCCAAAACCACCTCCTGGA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CCA 90 bp | GGGACCCTGTGGGCCTCCCTGTTGGGGAGGACCATGGTGGTGTCCTaGGTGAGGAGGGTGCTGTGGTGGTCCCTCTGGTCTATTCACATC | + |
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Preference number: 5 (lower is better) Translates to: GTLWASLLGRTMVVS*VRRVLWWSLWSIHI Trigger: GATGTGAATAGACCAGAGGGACCACCACAGCACCCTCCTCACCCAGGACACCACCATGGTCCTCCCCAACAGGGAGGCCCACAGGGTCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS TCA 90 bp | CCCTGTGGGCCTCCCTGTTGGGGAGGACCATGGTGGTGTCCTGGGTaGGGAGGGTGCTGTGGTGGTCCCTCTGGTCTATTCACATCTTCC | + |
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Preference number: 5 (lower is better) Translates to: PCGPPCWGGPWWCPG*GGCCGGPSGLFTSS Trigger: GGAAGATGTGAATAGACCAGAGGGACCACCACAGCACCCTCCTCACCCAGGACACCACCATGGTCCTCCCCAACAGGGAGGCCCACAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CCA 90 bp | TTGGGGAGGACCATGGTGGTGTCCTGGGTGAGGAGGGTGCTGTGGTaGTCCCTCTGGTCTATTCACATCTTCCTCACTGCCATCTTCATC | + |
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Preference number: 5 (lower is better) Translates to: LGRTMVVSWVRRVLW*SLWSIHIFLTAIFI Trigger: GATGAAGATGGCAGTGAGGAAGATGTGAATAGACCAGAGGGACCACCACAGCACCCTCCTCACCCAGGACACCACCATGGTCCTCCCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTAGGGGGTGGGCCTTGTaGGTTTCCCGGCCTAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSRGWAL*VSRPRG Trigger: CCCCCTAGGCCGGGAAACCAACAAGGCCCACCCCCT...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGCTGGGGGCCTCCCTTaGGGGGTGGGCCTTGTTGGT | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSAGGLP*GVGLVG Trigger: ACCAACAAGGCCCACCCCCAAAGGGAGGCCCCCAGC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTAGGCTGAGGGGGTCTTaGCTGGGGGCCTCCCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSRLRGS*LGASLW Trigger: CCAAAGGGAGGCCCCCAGCAAAGACCCCCTCAGCCT...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTGGGGGTGGGCCTTGTaGGTATCCAGGCTGAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSWGWAL*VSRLRG Trigger: CCCCCTCAGCCTGGATACCAACAAGGCCCACCCCCA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGTTGGTTACCAGGTCTaGGGGGTCCCTGGGGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSVGYQV*GVPGGL Trigger: GAGGCCCCCAGGGACCCCCAAGACCTGGTAACCAAC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGTGGGGGTGGGCCTaGTTGGTTTCCAGGCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLWGWA*LVSRLR Trigger: CCTCAGCCTGGAAACCAACAAGGCCCACCCCCACAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTGGGGGTGGACCTTGTaGGTTTCCAGGCTGAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSWGWTL*VSRLRG Trigger: CCCCCTCAGCCTGGAAACCAACAAGGTCCACCCCCA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGTGGGGGTGGGCCTaGTTGGTATCCAGGCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLWGWA*LVSRLR Trigger: CCTCAGCCTGGATACCAACAAGGCCCACCCCCACAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTGGGGGTGGGCCTTGTaGGTTTCCAGGCATAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSWGWAL*VSRHRG Trigger: CCCCCTATGCCTGGAAACCAACAAGGCCCACCCCCA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCAGAACTGGGAGGTCTaGGGGGCATTCCTCCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSQNWEV*GAFLQE Trigger: CTCCTGGAGGAATGCCCCCAAGACCTCCCAGTTCTG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTGGGGGTGGGCCTTGTaGGTTTACAGGCATAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSWGWAL*VYRHRG Trigger: CCCCCTATGCCTGTAAACCAACAAGGCCCACCCCCA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGTGGGGGTGGACCTaGTTGGTTTCCAGGCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLWGWT*LVSRLR Trigger: CCTCAGCCTGGAAACCAACAAGGTCCACCCCCACAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTGGGTGTGGGCCTTGTaGGTTTCCAGGCTGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSWVWAL*VSRLRR Trigger: CCTCCTCAGCCTGGAAACCAACAAGGCCCACACCCA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTGTGGGGGTGGGCCTaGTTGGTTTCCAGGCATAGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLWGWA*LVSRHR Trigger: CCTATGCCTGGAAACCAACAAGGCCCACCCCCACAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTGGAGGTGGGCCTTGTaGGTTACCAGGTCTTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSWRWAL*VTRSWG Trigger: CCCCCAAGACCTGGTAACCAACAAGGCCCACCTCCA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTTGGGGGTGGGCCTTGTaGGTTTCCAGACATAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSWGWAL*VSRHRG Trigger: CCCCCTATGTCTGGAAACCAACAAGGCCCACCCCCA...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTATGATGACCATATCCTaGGCTCTTCTCTCCCCTCTC | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSMMTIS*ALLSPL Trigger: GAGAGGGGAGAGAAGAGCCAAGGATATGGTCATCAT...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTCTCCAGGAGGTGGTTTaGGAAAATGATGACCATATC | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSLQEVV*ENDDHI Trigger: GATATGGTCATCATTTTCCAAAACCACCTCCTGGAG...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS-3UTR CAA 90 bp | CATCATTCTGCTATAAGAATGGTATTGAAGTCATCTGTCTTCTGTTCACCTTCTGTGACCACAGGTAATTaGGCTGTTCTTTGTTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: HHSAIRMVLKSSVFCSPSVTTGN*AVLCFH Trigger: ATGGAAACAAAGAACAGCCAAATTACCTGTGGTCAC...AGAAGGTGAACAGAAGACAGATGACTTCAATACCATTCTTATAGCAGAATGATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CCA 72 bp | TGGGCCTTGTTGGTTTCCCGGCCTAGGGGGACCCTGTaGGCCTCCCTGTTGGGGAGGACCATGGTGGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: WALLVSRPRGTL*ASLLGRTMVVS Trigger: GGACACCACCATGGTCCTCCCCAACAGGGAGGCCCACAGGGTCCCCCTAGGCCGGGAAACCAACAAGGCCCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CCA 72 bp | GTTTCCAGGCATAGGGGGTCCCTGAGGACCTCCCTGTaGGGGTGGGCCTTGTTGGTATCCAGGCTGAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: VSRHRGSLRTSL*GWALLVSRLRG Trigger: CCCCCTCAGCCTGGATACCAACAAGGCCCACCCCCACAGGGAGGTCCTCAGGGACCCCCTATGCCTGGAAAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS TCA 72 bp | CCTCCATGTAGAGGTGGGCCTTGTTGGTTTCCAGGCTaGGGTGGTCTCTGCTGGGGGCCTCCCTGTGGGGGT | + |
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Preference number: 6 (lower is better) Translates to: PPCRGGPCWFPG*GGLCWGPPCGG Trigger: ACCCCCACAGGGAGGCCCCCAGCAGAGACCACCTCAGCCTGGAAACCAACAAGGCCCACCTCTACATGGAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CCA 72 bp | AGGCTGAGGGGGTCTCTGAGGACCTCCCTTTGGAGGTaGGCCTTGTTGGTTACCAGGCCTAGGGGGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: RLRGSLRTSLWR*ALLVTRPRGSL Trigger: CAGGGACCCCCTAGGCCTGGTAACCAACAAGGCCCACCTCCAAAGGGAGGTCCTCAGAGACCCCCTCAGCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CCA 72 bp | GTTTCCAGACATAGGGGGTCCCTGAGGACCTCCCTGTaGGGGTGGGCCTTGTTGGTATCCAGGCTGAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: VSRHRGSLRTSL*GWALLVSRLRG Trigger: CCCCCTCAGCCTGGATACCAACAAGGCCCACCCCCACAGGGAGGTCCTCAGGGACCCCCTATGTCTGGAAAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CAA 72 bp | AGGGGGTCTCTGAGGACCTCCCTTTGGAGGTGGGCCTaGTTGGTTTCCAGGCTGAGGGGGTCTCTGCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: RGSLRTSLWRWA*LVSRLRGSLLG Trigger: CCCCAGCAGAGACCCCCTCAGCCTGGAAACCAACAAGGCCCACCTCCAAAGGGAGGTCCTCAGAGACCCCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CCA 72 bp | AGGCTGAGGGGGTCTCTGAGGACCTCCCTTTGGAGGTaGGCCTTGTTGGTTTCCAGGCTGAGGGGGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: RLRGSLRTSLWR*ALLVSRLRGSL Trigger: CAGAGACCCCCTCAGCCTGGAAACCAACAAGGCCCACCTCCAAAGGGAGGTCCTCAGAGACCCCCTCAGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CAA 72 bp | GGTATCCAGGCTGAGGGGGTCTCTGAGGACCTCCCTTaGGAGGTGGGCCTTGTTGGTTTCCAGGCTGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: GIQAEGVSEDLP*EVGLVGFQAEG Trigger: CCCCTCAGCCTGGAAACCAACAAGGCCCACCTCCAAAGGGAGGTCCTCAGAGACCCCCTCAGCCTGGATACC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CAA 90 bp | GGCCTTGTTGGTATCCAGGCTGAGGGGGTCTCTGAGGACCTCCCTTaGGAGGTGGGCCTTGTTGGTTTCCAGGCTGAGGGGGTCTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: GLVGIQAEGVSEDLP*EVGLVGFQAEGVSA Trigger: AGCAGAGACCCCCTCAGCCTGGAAACCAACAAGGCCCACCTCCAAAGGGAGGTCCTCAGAGACCCCCTCAGCCTGGATACCAACAAGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS TCA 72 bp | GGTGGGCCTTGTTGGTTTCCAGACATAGGGGGTCCCTaGGGACCTCCCTGTGGGGGTGGGCCTTGTTGGTAT | + |
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Preference number: 6 (lower is better) Translates to: GGPCWFPDIGGP*GPPCGGGPCWY Trigger: ATACCAACAAGGCCCACCCCCACAGGGAGGTCCTCAGGGACCCCCTATGTCTGGAAACCAACAAGGCCCACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CCA 72 bp | GTTTACAGGCATAGGGGGTCCCTGAGAACCTCCCTGTaGTGGTGGGCCTTGTTGTTTTCCAGGCTGAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: VYRHRGSLRTSL*WWALLFSRLRG Trigger: CCCCCTCAGCCTGGAAAACAACAAGGCCCACCACCACAGGGAGGTTCTCAGGGACCCCCTATGCCTGTAAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS TCA 72 bp | GGTGGGCCTTGTTGGTTTACAGGCATAGGGGGTCCCTaGGAACCTCCCTGTGGTGGTGGGCCTTGTTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: GGPCWFTGIGGP*EPPCGGGPCCF Trigger: AAAACAACAAGGCCCACCACCACAGGGAGGTTCTCAGGGACCCCCTATGCCTGTAAACCAACAAGGCCCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CCA 72 bp | GTGTCCTGGGTGAGGAGGGTGCTGTGGTGGTCCCTCTaGTCTATTCACATCTTCCTCACTGCCATCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: VSWVRRVLWWSL*SIHIFLTAIFI Trigger: GATGAAGATGGCAGTGAGGAAGATGTGAATAGACCAGAGGGACCACCACAGCACCCTCCTCACCCAGGACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CAA 72 bp | ATTTGGCTGTTCTTTGTTTCCATGCTGGGGTGGGCCTaGATGGTTTCCTGGCTGAGAAGGTCTCTGAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: IWLFFVSMLGWA*MVSWLRRSLRA Trigger: GGCCCTCAGAGACCTTCTCAGCCAGGAAACCATCAAGGCCCACCCCAGCATGGAAACAAAGAACAGCCAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CCA 72 bp | CAGGTAATTTGGCTGTTCTTTGTTTCCATGCTGGGGTaGGCCTTGATGGTTTCCTGGCTGAGAAGGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: QVIWLFFVSMLG*ALMVSWLRRSL Trigger: CAGAGACCTTCTCAGCCAGGAAACCATCAAGGCCCACCCCAGCATGGAAACAAAGAACAGCCAAATTACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS CAA 72 bp | TGGGAGGTCTTGGGGGCATTCCTCCAGGAGGTGGTTTaGGAAAATGATGACCATATCCTTGGCTCTTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: WEVLGAFLQEVV*ENDDHILGSSL Trigger: GAGAGAAGAGCCAAGGATATGGTCATCATTTTCCAAAACCACCTCCTGGAGGAATGCCCCCAAGACCTCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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| CDS TCA 72 bp | CCCTCTCTAGGAGCTGAGAATTTGAGTCTTCGTAGGTaGTCTCTTCATCTTGTCTCTGAGCTGAGCTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PSLGAENLSLRR*SLHLVSELSSG Trigger: TCCTGAGCTCAGCTCAGAGACAAGATGAAGAGATCACCTACGAAGACTCAAATTCTCAGCTCCTAGAGAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087853.4 |
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