Pregenerated sensors for PRAP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025467Ensembl transcript IDs: ENSMUST00000026540.9
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGGGCTCTGGTGTGCTGGAGCTaGGCCTGCCTCCCACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: QWSQQPRPQERSGRVVRALVCWS*ACLPQQ Trigger: CTGCTGTGGGAGGCAGGCGCAGCTCCAGCACACCAG...AGCCCTAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR GCA 90 bp | GAGACTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTTGCTGGAGCTGCGCCTaGCTCCCACAGCAGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: ETQWSQQPRPQERSGRVVCWSCA*LPQQCS Trigger: GCTGCACTGCTGTGGGAGGCAGGCGCAGCTCCAGCA...AACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAGTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR GCA 90 bp | GAGACTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTGACAGGGACCTGGTGTaGTGGAGCTGCGCCTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: ETQWSQQPRPQERSGRVVDRDLV*WSCACL Trigger: GAGGCAGGCGCAGCTCCAGCACACCAGGTCCCTGTC...AACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAGTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CCA 90 bp | GAGACTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGGGACCTGGTGTGCTaGAGCTGCGCCTGCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: ETQWSQQPRPQERSGRVVRDLVC*SCACLP Trigger: TGGGAGGCAGGCGCAGCTCCAGCACACCAGGTCCCT...AACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAGTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR GCA 90 bp | GAGACTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTTGCCTCCCACAGCAGTaGAGCCACCAAACAGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: ETQWSQQPRPQERSGRVVCLPQQ*SHQTGG Trigger: GCCACCTGTTTGGTGGCTGCACTGCTGTGGGAGGCA...AACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAGTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CCA 90 bp | CTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGGGAGGATGGGCCGTGACTaGGGCACTTCTTCATCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LSGHNSLDLRKGVEEWLGRMGRD*GTSSSW Trigger: CCAGGATGAAGAAGTGCCCCAGTCACGGCCCATCCT...CCCTAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR TCA 90 bp | CTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGGGGTTTGCCTTTGGTCTTaGCAGGGACCTGGTGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: LSGHNSLDLRKGVEEWLGVCLWS*QGPGVL Trigger: CAGCACACCAGGTCCCTGTCAAGACCAAAGGCAAAC...CCCTAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CCA 90 bp | AGACTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGTCTTGACAGGGACCTaGTGTGCTGGAGCTGCGCCT | + |
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Preference number: 4 (lower is better) Translates to: RLSGHNSLDLRKGVEEWLVLTGT*CAGAAP Trigger: AGGCGCAGCTCCAGCACACCAGGTCCCTGTCAAGAC...TAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR TCA 90 bp | GAGACTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTTCCAGTTCTGGACCCTaGAGAGGACTGCGAAGATGG | + |
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Preference number: 4 (lower is better) Translates to: ETQWSQQPRPQERSGRVVSSSGP*RGLRRW Trigger: CCATCTTCGCAGTCCTCTTCAGGGTCCAGAACTGGA...AACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAGTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CCA 90 bp | CTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGGGGTCAAGATCCAGTTCTaGACCCTGAAGAGGACTGCG | + |
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Preference number: 4 (lower is better) Translates to: LSGHNSLDLRKGVEEWLGVKIQF*TLKRTA Trigger: CGCAGTCCTCTTCAGGGTCCAGAACTGGATCTTGAC...CCCTAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CCA 90 bp | GAGACTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTATAGAGTGGGCGAGGTaGTCAAGGTCCTCCTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: ETQWSQQPRPQERSGRVVIEWAR*SRSSSG Trigger: ACCAGAGGAGGACCTTGACCACCTCGCCCACTCTAT...AACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAGTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CCA 90 bp | AGACTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTACTGCAGGCTTCTGTTTaGGTTCAGGAAGCAGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: RLSGHNSLDLRKGVEEWLLQASV*VQEAVA Trigger: GGCCACTGCTTCCTGAACCCAAACAGAAGCCTGCAG...TAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CCA 90 bp | CAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGGGCTGGCACTTCTTCATCCTaGACATCGTCAGACATGGGA | + |
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Preference number: 4 (lower is better) Translates to: QWSQQPRPQERSGRVVRAGTSSS*TSSDMG Trigger: TCCCATGTCTGACGATGTCCAGGATGAAGAAGTGCC...AGCCCTAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR GCA 90 bp | CAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGGGCTACATGGGATGGTCTATaGTGTCAAGATCCAGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: QWSQQPRPQERSGRVVRATWDGL*CQDPVL Trigger: CAGAACTGGATCTTGACAGCATAGACCATCCCATGT...AGCCCTAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS TCA 90 bp | GAGTGGGCGAGGTGGTCAAGGTCCTCCTCTGGTCCCTGCAGCACCTaGCGATACAGGATGGGCCGTGACTGGGGCACTTCTTCATCCTGG | + |
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Preference number: 5 (lower is better) Translates to: EWARWSRSSSGPCST*RYRMGRDWGTSSSW Trigger: CCAGGATGAAGAAGTGCCCCAGTCACGGCCCATCCTGTATCGTCAGGTGCTGCAGGGACCAGAGGAGGACCTTGACCACCTCGCCCACTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS CCA 90 bp | TCCTGTTCAGGGAACACATGTTTGCCTTTGGTCTTGACAGGGACCTaGTGTGCTGGAGCTGCGCCTGCCTCCCACAGCAGTGCAGCCACC | + |
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Preference number: 5 (lower is better) Translates to: SCSGNTCLPLVLTGT*CAGAAPASHSSAAT Trigger: GGTGGCTGCACTGCTGTGGGAGGCAGGCGCAGCTCCAGCACACCAGGTCCCTGTCAAGACCAAAGGCAAACATGTGTTCCCTGAACAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS CCA 90 bp | GGTCAAGGTCCTCCTCTGGTCCCTGCAGCACCTGACGATACAGGATaGGCCGTGACTGGGGCACTTCTTCATCCTGGACATCGTCAGACA | + |
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Preference number: 5 (lower is better) Translates to: GQGPPLVPAAPDDTG*AVTGALLHPGHRQT Trigger: TGTCTGACGATGTCCAGGATGAAGAAGTGCCCCAGTCACGGCCCATCCTGTATCGTCAGGTGCTGCAGGGACCAGAGGAGGACCTTGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS GCA 90 bp | TTCAGGGAACACATGTTTGCCTTTGGTCTTGACAGGGACCTGGTGTaGTGGAGCTGCGCCTGCCTCCCACAGCAGTGCAGCCACCAAACA | + |
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Preference number: 5 (lower is better) Translates to: FREHMFAFGLDRDLV*WSCACLPQQCSHQT Trigger: TGTTTGGTGGCTGCACTGCTGTGGGAGGCAGGCGCAGCTCCAGCACACCAGGTCCCTGTCAAGACCAAAGGCAAACATGTGTTCCCTGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS TCA 90 bp | CCTTCTCTGTTTCCTGTTCAGGGAACACATGTTTGCCTTTGGTCTTaGCAGGGACCTGGTGTGCTGGAGCTGCGCCTGCCTCCCACAGCA | + |
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Preference number: 5 (lower is better) Translates to: PSLFPVQGTHVCLWS*QGPGVLELRLPPTA Trigger: TGCTGTGGGAGGCAGGCGCAGCTCCAGCACACCAGGTCCCTGTCAAGACCAAAGGCAAACATGTGTTCCCTGAACAGGAAACAGAGAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CAA 90 bp | GAGACTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGTGGCCCCAGCTGGTaGTCCTTTTCAAGAGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: ETQWSQQPRPQERSGRVVSGPSW*SFSRGS Trigger: GGAGCCTCTTGAAAAGGACAACCAGCTGGGGCCACT...AACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAGTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CAA 90 bp | CAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGGGCTAACACATGTTTGCCTTaGGTCTTGACAGGGACCTGG | + |
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Preference number: 5 (lower is better) Translates to: QWSQQPRPQERSGRVVRANTCLP*VLTGTW Trigger: CCAGGTCCCTGTCAAGACCAAAGGCAAACATGTGTT...AGCCCTAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CAA 90 bp | CTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTAGGGTCAGGGAACACATGTTaGCCTTTGGTCTTGACAGGG | + |
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Preference number: 5 (lower is better) Translates to: LSGHNSLDLRKGVEEWLGSGNTC*PLVLTG Trigger: CCCTGTCAAGACCAAAGGCAAACATGTGTTCCCTGA...CCCTAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS-3UTR CAA 90 bp | AGACTCAGTGGTCACAACAGCCTAGACCTCAGGAAAGGAGTGGAAGAGTGGTTATGTTTGCCTTTGGTCTaGACAGGGACCTGGTGTGCT | + |
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Preference number: 5 (lower is better) Translates to: RLSGHNSLDLRKGVEEWLCLPLV*TGTWCA Trigger: AGCACACCAGGTCCCTGTCAAGACCAAAGGCAAACA...TAACCACTCTTCCACTCCTTTCCTGAGGTCTAGGCTGTTGTGACCACTGAGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS GCA 72 bp | CTGGTGTGCTGGAGCTGCGCCTGCCTCCCACAGCAGTaGAGCCACCAAACAGGTGGCCAGGAGAAACCTCTT | + |
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Preference number: 6 (lower is better) Translates to: LVCWSCACLPQQ*SHQTGGQEKPL Trigger: AAGAGGTTTCTCCTGGCCACCTGTTTGGTGGCTGCACTGCTGTGGGAGGCAGGCGCAGCTCCAGCACACCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS GCA 72 bp | CCAGGTCATGGCATCTGGACGCTTTTCCTCGGCAGCTaGAGGCTTCTGTTTGGGTTCAGGAAGCAGTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: PGHGIWTLFLGS*RLLFGFRKQWP Trigger: GGGCCACTGCTTCCTGAACCCAAACAGAAGCCTGCAGCTGCCGAGGAAAAGCGTCCAGATGCCATGACCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS CCA 72 bp | GGGAACACATGTTTGCCTTTGGTCTTGACAGGGACCTaGTGTGCTGGAGCTGCGCCTGCCTCCCACAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: GNTCLPLVLTGT*CAGAAPASHSS Trigger: ACTGCTGTGGGAGGCAGGCGCAGCTCCAGCACACCAGGTCCCTGTCAAGACCAAAGGCAAACATGTGTTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS CCA 72 bp | GGCAGCTGCAGGCTTCTGTTTGGGTTCAGGAAGCAGTaGCCCCAGCTGGTTGTCCTTTTCAAGAGGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: GSCRLLFGFRKQ*PQLVVLFKRLQ Trigger: CTGGAGCCTCTTGAAAAGGACAACCAGCTGGGGCCACTGCTTCCTGAACCCAAACAGAAGCCTGCAGCTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS CAA 90 bp | TCCCAGACCTTCTCTGTTTCCTGTTCAGGGAACACATGTTTGCCTTaGGTCTTGACAGGGACCTGGTGTGCTGGAGCTGCGCCTGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SQTFSVSCSGNTCLP*VLTGTWCAGAAPAS Trigger: GGAGGCAGGCGCAGCTCCAGCACACCAGGTCCCTGTCAAGACCAAAGGCAAACATGTGTTCCCTGAACAGGAAACAGAGAAGGTCTGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS CCA 72 bp | GGCTTCTGTTTGGGTTCAGGAAGCAGTGGCCCCAGCTaGTTGTCCTTTTCAAGAGGCTCCAGGGCTCTAGTA | + |
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Preference number: 6 (lower is better) Translates to: GFCLGSGSSGPS*LSFSRGSRALV Trigger: TACTAGAGCCCTGGAGCCTCTTGAAAAGGACAACCAGCTGGGGCCACTGCTTCCTGAACCCAAACAGAAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS CCA 72 bp | CAGGATATCCTCAGTCTCCACCCAGGTCATGGCATCTaGACGCTTTTCCTCGGCAGCTGCAGGCTTCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: QDILSLHPGHGI*TLFLGSCRLLF Trigger: AAACAGAAGCCTGCAGCTGCCGAGGAAAAGCGTCCAGATGCCATGACCTGGGTGGAGACTGAGGATATCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS GCA 72 bp | TGCTGTCAAGATCCAGTTCTGGACCCTGAAGAGGACTaGGAAGATGGCTCAGGATATCCTCAGTCTCCACCC | + |
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Preference number: 6 (lower is better) Translates to: CCQDPVLDPEED*EDGSGYPQSPP Trigger: GGGTGGAGACTGAGGATATCCTGAGCCATCTTCGCAGTCCTCTTCAGGGTCCAGAACTGGATCTTGACAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS CAA 72 bp | TTCTGTTTGGGTTCAGGAAGCAGTGGCCCCAGCTGGTaGTCCTTTTCAAGAGGCTCCAGGGCTCTAGTATCC | + |
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Preference number: 6 (lower is better) Translates to: FCLGSGSSGPSW*SFSRGSRALVS Trigger: GGATACTAGAGCCCTGGAGCCTCTTGAAAAGGACAACCAGCTGGGGCCACTGCTTCCTGAACCCAAACAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS CAA 90 bp | CTAGTATCCCAGACCTTCTCTGTTTCCTGTTCAGGGAACACATGTTaGCCTTTGGTCTTGACAGGGACCTGGTGTGCTGGAGCTGCGCCT | + |
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Preference number: 6 (lower is better) Translates to: LVSQTFSVSCSGNTC*PLVLTGTWCAGAAP Trigger: AGGCGCAGCTCCAGCACACCAGGTCCCTGTCAAGACCAAAGGCAAACATGTGTTCCCTGAACAGGAAACAGAGAAGGTCTGGGATACTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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| CDS CAA 72 bp | CAGACCTTCTCTGTTTCCTGTTCAGGGAACACATGTTaGCCTTTGGTCTTGACAGGGACCTGGTGTGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: QTFSVSCSGNTC*PLVLTGTWCAG Trigger: TCCAGCACACCAGGTCCCTGTCAAGACCAAAGGCAAACATGTGTTCCCTGAACAGGAAACAGAGAAGGTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026540.9 |
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