RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRAMEX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031411

Ensembl transcript IDs: ENSMUST00000033786.6, ENSMUST00000113159.8

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp CGAGAAAAGAACATTGAACAGATAACAGGTCAAATTTGGAGCTTGAGATGGAGTTCTCGGCAGCAGAGGTaGAAAGACCCTGAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: REKNIEQITGQIWSLRWSSRQQR*KDPELC
Trigger: GCAGAGCTCAGGGTCTTTGCACCTCTGCTGCCGAGA...ACTCCATCTCAAGCTCCAAATTTGACCTGTTATCTGTTCAATGTTCTTTTCTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR CCA 90 bp CGAGAAAAGAACATTGAACAGATAACAGGTCAAATTTGGAGCTTGAGATGGAGTAACAAAAAGCTCCCTTaGGATCTCCCCCAGAGAATG +
Preference number: 4 (lower is better)
Translates to: REKNIEQITGQIWSLRWSNKKLP*DLPQRM
Trigger: CATTCTCTGGGGGAGATCCCAAGGGAGCTTTTTGTT...ACTCCATCTCAAGCTCCAAATTTGACCTGTTATCTGTTCAATGTTCTTTTCTCG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR CCA 90 bp CGAGAAAAGAACATTGAACAGATAACAGGTCAAATTTGGAGCTTGAGATGGAGTGAAGACTCTCAACCATaGCTTTCAGGAGTTCACGCT +
Preference number: 4 (lower is better)
Translates to: REKNIEQITGQIWSLRWSEDSQP*LSGVHA
Trigger: AGCGTGAACTCCTGAAAGCCATGGTTGAGAGTCTTC...ACTCCATCTCAAGCTCCAAATTTGACCTGTTATCTGTTCAATGTTCTTTTCTCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR TCA 90 bp TTCTTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTTCCTATATCCTCCCGTaGAGGCAGCAGAGAACAATG +
Preference number: 4 (lower is better)
Translates to: FLHQILEAREKNIEQITGSYILP*RQQRTM
Trigger: CATTGTTCTCTGCTGCCTTCACGGGAGGATATAGGA...ACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR TCA 90 bp TTCTTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTTGGGCAGGAAGAAACTaGAGACTCTCAACCATGGCT +
Preference number: 4 (lower is better)
Translates to: FLHQILEAREKNIEQITGWAGRN*RLSTMA
Trigger: AGCCATGGTTGAGAGTCTTCAGTTTCTTCCTGCCCA...ACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR GCA 90 bp TTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTCAATTCCATAGGCTGGATTaGAGACTGACTCTCGGGCTT +
Preference number: 4 (lower is better)
Translates to: LHQILEAREKNIEQITGQFHRLD*RLTLGL
Trigger: AAGCCCGAGAGTCAGTCTGCAATCCAGCCTATGGAA...TTGACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR CCA 90 bp CGAGAAAAGAACATTGAACAGATAACAGGTCAAATTTGGAGCTTGAGATGGAGTAACAAGTTGGAGATCTaGCACCAAAATCAGGGCATG +
Preference number: 4 (lower is better)
Translates to: REKNIEQITGQIWSLRWSNKLEI*HQNQGM
Trigger: CATGCCCTGATTTTGGTGCCAGATCTCCAACTTGTT...ACTCCATCTCAAGCTCCAAATTTGACCTGTTATCTGTTCAATGTTCTTTTCTCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR TCA 90 bp TTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTCAAGAGGTGCAAAGACCCTaGGCTCTGCTGTACTTTATT +
Preference number: 4 (lower is better)
Translates to: LHQILEAREKNIEQITGQEVQRP*ALLYFI
Trigger: AATAAAGTACAGCAGAGCTCAGGGTCTTTGCACCTC...TTGACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR GCA 90 bp TTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTCAATGGTTTATGGCCAGATaGTGCAAGGTATCTGAGAGC +
Preference number: 4 (lower is better)
Translates to: LHQILEAREKNIEQITGQWFMAR*CKVSES
Trigger: GCTCTCAGATACCTTGCAGCATCTGGCCATAAACCA...TTGACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR TCA 90 bp TTCTTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTATCTCCCCCAGAGAATaGATTGCTACAAGCTCATTA +
Preference number: 4 (lower is better)
Translates to: FLHQILEAREKNIEQITGISPRE*IATSSL
Trigger: TAATGAGCTTGTAGCAATTCATTCTCTGGGGGAGAT...ACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR TCA 90 bp CGAGAAAAGAACATTGAACAGATAACAGGTCAAATTTGGAGCTTGAGATGGAGTCCAAATCTTCACCATTaGAGTCAGTATCTTCCTATA +
Preference number: 4 (lower is better)
Translates to: REKNIEQITGQIWSLRWSPNLHH*SQYLPI
Trigger: TATAGGAAGATACTGACTTCAATGGTGAAGATTTGG...ACTCCATCTCAAGCTCCAAATTTGACCTGTTATCTGTTCAATGTTCTTTTCTCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR CCA 90 bp TTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTCAAATCCAAAAGCGAGGATaGGTCTCTTTCATCCATCAT +
Preference number: 4 (lower is better)
Translates to: LHQILEAREKNIEQITGQIQKRG*VSFIHH
Trigger: ATGATGGATGAAAGAGACCCATCCTCGCTTTTGGAT...TTGACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR CCA 90 bp TTCTTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTTCTGTTAAATGGCAATaGTTTATGGCCAGATGCTGC +
Preference number: 4 (lower is better)
Translates to: FLHQILEAREKNIEQITGSVKWQ*FMARCC
Trigger: GCAGCATCTGGCCATAAACCATTGCCATTTAACAGA...ACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR CCA 90 bp TTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTCAACTTAATGTTCCAATGTaGAGACAGGTAAAAGGCCAA +
Preference number: 4 (lower is better)
Translates to: LHQILEAREKNIEQITGQLNVPM*RQVKGQ
Trigger: TTGGCCTTTTACCTGTCTCCACATTGGAACATTAAG...TTGACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS TCA 90 bp CTCAACTTAGGGCCCCCAGAAGAACAGTCCTGGGCAGGAAGAAACTaGAGACTCTCAACCATGGCTTTCAGGAGTTCACGCTGGGGTTCC +
Preference number: 5 (lower is better)
Translates to: LNLGPPEEQSWAGRN*RLSTMAFRSSRWGS
Trigger: GGAACCCCAGCGTGAACTCCTGAAAGCCATGGTTGAGAGTCTTCAGTTTCTTCCTGCCCAGGACTGTTCTTCTGGGGGCCCTAAGTTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS CCA 90 bp AGTCAGTATCTTCCTATATCCTCCCGTGAAGGCAGCAGAGAACAATaGAACAAAAAGCTCCCTTGGGATCTCCCCCAGAGAATGAATTGC +
Preference number: 5 (lower is better)
Translates to: SQYLPISSREGSREQ*NKKLPWDLPQRMNC
Trigger: GCAATTCATTCTCTGGGGGAGATCCCAAGGGAGCTTTTTGTTCCATTGTTCTCTGCTGCCTTCACGGGAGGATATAGGAAGATACTGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS CCA 90 bp AAGAAATCCAAATTAGGTGGTAAGGCTCTGAGGAGGCTATCCAGATaGTCTGTGAGGCTAAAGGAAGACAGGTTGAGCTCTTTCAGGCAG +
Preference number: 5 (lower is better)
Translates to: KKSKLGGKALRRLSR*SVRLKEDRLSSFRQ
Trigger: CTGCCTGAAAGAGCTCAACCTGTCTTCCTTTAGCCTCACAGACCATCTGGATAGCCTCCTCAGAGCCTTACCACCTAATTTGGATTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS-3UTR CAA 90 bp TTCTTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTGAACAAAAAGCTCCCTaGGGATCTCCCCCAGAGAAT +
Preference number: 5 (lower is better)
Translates to: FLHQILEAREKNIEQITGEQKAP*GSPPEN
Trigger: ATTCTCTGGGGGAGATCCCAAGGGAGCTTTTTGTTC...ACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS-3UTR CAA 90 bp TTCTTACATCAGATTCTTGAAGCTCGAGAAAAGAACATTGAACAGATAACAGGTCTAAAGGAAGACAGGTaGAGCTCTTTCAGGCAGTTC +
Preference number: 5 (lower is better)
Translates to: FLHQILEAREKNIEQITGLKEDR*SSFRQF
Trigger: GAACTGCCTGAAAGAGCTCAACCTGTCTTCCTTTAG...ACCTGTTATCTGTTCAATGTTCTTTTCTCGAGCTTCAAGAATCTGATGTAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113159.8
CDS GCA 72 bp CCAAAATCAGGGCATGTTGTCTTGCAGTCAACACCCTaGCTTACATCTAGGATCCTCAACTTAGGGCCCCCA +
Preference number: 6 (lower is better)
Translates to: PKSGHVVLQSTP*LTSRILNLGPP
Trigger: TGGGGGCCCTAAGTTGAGGATCCTAGATGTAAGGCAGGGTGTTGACTGCAAGACAACATGCCCTGATTTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS TCA 72 bp CTTGTAGCATTGCCTTCAGTTGTGCTTGGACATCGGTaGGCTTCTGCCGGTCTAATCTGCCATGAAATTGCC +
Preference number: 6 (lower is better)
Translates to: LVALPSVVLGHR*ASAGLICHEIA
Trigger: GGCAATTTCATGGCAGATTAGACCGGCAGAAGCTCACCGATGTCCAAGCACAACTGAAGGCAATGCTACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS CAA 72 bp GTTGGAGATCTGGCACCAAAATCAGGGCATGTTGTCTaGCAGTCAACACCCTGCCTTACATCTAGGATCCTC +
Preference number: 6 (lower is better)
Translates to: VGDLAPKSGHVV*QSTPCLTSRIL
Trigger: GAGGATCCTAGATGTAAGGCAGGGTGTTGACTGCAAGACAACATGCCCTGATTTTGGTGCCAGATCTCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS GCA 72 bp TTGGAGATCTGGCACCAAAATCAGGGCATGTTGTCTTaGAGTCAACACCCTGCCTTACATCTAGGATCCTCA +
Preference number: 6 (lower is better)
Translates to: LEIWHQNQGMLS*SQHPALHLGSS
Trigger: TGAGGATCCTAGATGTAAGGCAGGGTGTTGACTGCAAGACAACATGCCCTGATTTTGGTGCCAGATCTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS CCA 72 bp AAATTAGGTGGTAAGGCTCTGAGGAGGCTATCCAGATaGTCTGTGAGGCTAAAGGAAGACAGGTTGAGCTCT +
Preference number: 6 (lower is better)
Translates to: KLGGKALRRLSR*SVRLKEDRLSS
Trigger: AGAGCTCAACCTGTCTTCCTTTAGCCTCACAGACCATCTGGATAGCCTCCTCAGAGCCTTACCACCTAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS TCA 72 bp AGGTCTACTAGTAGTTCCATAGGCTGGATTGCAGACTaGCTCTCGGGCTTTAGATCTACAATGCTGTACTGG +
Preference number: 6 (lower is better)
Translates to: RSTSSSIGWIAD*LSGFRSTMLYW
Trigger: CCAGTACAGCATTGTAGATCTAAAGCCCGAGAGTCAGTCTGCAATCCAGCCTATGGAACTACTAGTAGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS CAA 90 bp AACCATGAAAACAAGTTGGAGATCTGGCACCAAAATCAGGGCATGTaGTCTTGCAGTCAACACCCTGCCTTACATCTAGGATCCTCAACT +
Preference number: 6 (lower is better)
Translates to: NHENKLEIWHQNQGM*SCSQHPALHLGSST
Trigger: AGTTGAGGATCCTAGATGTAAGGCAGGGTGTTGACTGCAAGACAACATGCCCTGATTTTGGTGCCAGATCTCCAACTTGTTTTCATGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS TCA 72 bp TGCTGCAAGGTATCTGAGAGCTTCTGCAAAAGAGTCTaGAAAGGCCCACAATCATCCCAATACATTGGGTTG +
Preference number: 6 (lower is better)
Translates to: CCKVSESFCKRV*KGPQSSQYIGL
Trigger: CAACCCAATGTATTGGGATGATTGTGGGCCTTTTCAGACTCTTTTGCAGAAGCTCTCAGATACCTTGCAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS TCA 72 bp GGAACAAAAAGCTCCCTTGGGATCTCCCCCAGAGAATaGATTGCTACAAGCTCATTACTTAGTAGACTCTGT +
Preference number: 6 (lower is better)
Translates to: GTKSSLGISPRE*IATSSLLSRLC
Trigger: ACAGAGTCTACTAAGTAATGAGCTTGTAGCAATTCATTCTCTGGGGGAGATCCCAAGGGAGCTTTTTGTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS GCA 72 bp ATGGCATCTGTTAAATGGCAATGGTTTATGGCCAGATaGTGCAAGGTATCTGAGAGCTTCTGCAAAAGAGTC +
Preference number: 6 (lower is better)
Translates to: MASVKWQWFMAR*CKVSESFCKRV
Trigger: GACTCTTTTGCAGAAGCTCTCAGATACCTTGCAGCATCTGGCCATAAACCATTGCCATTTAACAGATGCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS CCA 72 bp CAGAGTGAGTACAACCATGAAAACAAGTTGGAGATCTaGCACCAAAATCAGGGCATGTTGTCTTGCAGTCAA +
Preference number: 6 (lower is better)
Translates to: QSEYNHENKLEI*HQNQGMLSCSQ
Trigger: TTGACTGCAAGACAACATGCCCTGATTTTGGTGCCAGATCTCCAACTTGTTTTCATGGTTGTACTCACTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8
CDS GCA 72 bp GAAAATCTATCAATTTGTAGATCTCGGCAGCAGAGGTaGAAAGACCCTGAGCTCTGCTGTACTTTATTCAGA +
Preference number: 6 (lower is better)
Translates to: ENLSICRSRQQR*KDPELCCTLFR
Trigger: TCTGAATAAAGTACAGCAGAGCTCAGGGTCTTTGCACCTCTGCTGCCGAGATCTACAAATTGATAGATTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033786.6
ENSMUST00000113159.8