Pregenerated sensors for PRAMEL7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025839Ensembl transcript IDs: ENSMUST00000026957.4
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGATTTGGCTTGGCATACATTGCTACTTTGAAGACTTTTACACATaGCCCACCCACCAGGCAGATGCAGAAGGGGGAAATATCAGAATA | + |
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Preference number: 1 (lower is better) Translates to: RIWLGIHCYFEDFYT*PTHQADAEGGNIRI Trigger: TATTCTGATATTTCCCCCTTCTGCATCTGCCTGGTGGGTGGGTCATGTGTAAAAGTCTTCAAAGTAGCAATGTATGCCAAGCCAAATCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| 3UTR-3UTR CCA 90 bp | GCAGATGCAGAAGGGGGAAATATCAGAATATCCCCATTGCACATTGAGAGGTTAGCCATGTGGGTTCTCTaGATGAGAGACCAGTCCCTA | + |
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Preference number: 2 (lower is better) Translates to: ADAEGGNIRISPLHIERLAMWVL*MRDQSL Trigger: TAGGGACTGGTCTCTCATCCAGAGAACCCACATGGC...TAACCTCTCAATGTGCAATGGGGATATTCTGATATTTCCCCCTTCTGCATCTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| 3UTR CAA 90 bp | ACCCACCAGGCAGATGCAGAAGGGGGAAATATCAGAATATCCCCATaGCACATTGAGAGGTTATGTGAAACAAGGTTAAACATCCTATCC | + |
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Preference number: 2 (lower is better) Translates to: THQADAEGGNIRISP*HIERLCETRLNILS Trigger: GGATAGGATGTTTAACCTTGTTTCACATAACCTCTCAATGTGCAATGGGGATATTCTGATATTTCCCCCTTCTGCATCTGCCTGGTGGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| 3UTR-3UTR CCA 90 bp | AGGTTAAACATCCTATCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACAATGTCCAAAGCCATGTaGGTTCTCTGGATGAGAGAC | + |
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Preference number: 2 (lower is better) Translates to: RLNILSLHYCVQRTVLTTMSKAM*VLWMRD Trigger: GTCTCTCATCCAGAGAACCCACATGGCTTTGGACAT...TGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGATAGGATGTTTAACCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| 3UTR TCA 72 bp | CTTGGCATACATTGCTACTTTGAAGACTTTTACACATaGCCCACCCACCAGGCAGATGCAGAAGGGGGAAAT | + |
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Preference number: 3 (lower is better) Translates to: LGIHCYFEDFYT*PTHQADAEGGN Trigger: ATTTCCCCCTTCTGCATCTGCCTGGTGGGTGGGTCATGTGTAAAAGTCTTCAAAGTAGCAATGTATGCCAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| 3UTR-3UTR CAA 90 bp | GCAGATGCAGAAGGGGGAAATATCAGAATATCCCCATTGCACATTGAGAGGTTAAGAGTCAGTCCTGATTaGGACCATTGTTTCATCACA | + |
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Preference number: 3 (lower is better) Translates to: ADAEGGNIRISPLHIERLRVSPD*DHCFIT Trigger: TGTGATGAAACAATGGTCCAAATCAGGACTGACTCT...TAACCTCTCAATGTGCAATGGGGATATTCTGATATTTCCCCCTTCTGCATCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| 3UTR TCA 72 bp | GAGTCAGTCCTGATTTGGACCATTGTTTCATCACATTaGAAAATGTCCAAAGCCATGTGGGTTCTCTGGATG | + |
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Preference number: 3 (lower is better) Translates to: ESVLIWTIVSSH*KMSKAMWVLWM Trigger: CATCCAGAGAACCCACATGGCTTTGGACATTTTTCAATGTGATGAAACAATGGTCCAAATCAGGACTGACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR TCA 90 bp | GACCCACCCACCAGGCAGATGCAGAAGGGGGAAATATCAGAATATCCCCATTGCTCCTCACCAGGCTCCTaGAAGCCTGATCCTGGAGTG | + |
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Preference number: 4 (lower is better) Translates to: DPPTRQMQKGEISEYPHCSSPGS*KPDPGV Trigger: CACTCCAGGATCAGGCTTTCAGGAGCCTGGTGAGGA...GCAATGGGGATATTCTGATATTTCCCCCTTCTGCATCTGCCTGGTGGGTGGGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR TCA 90 bp | GATGAGAGACCAGTCCCTAGGAATTTCTTAGTACCCCAAAGGAATATTCCTGTTGACTCCAAGTCTGACTaGGAGAGCTGGCACAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: DERPVPRNFLVPQRNIPVDSKSD*ESWHRV Trigger: CACCCTGTGCCAGCTCTCTCAGTCAGACTTGGAGTC...AACAGGAATATTCCTTTGGGGTACTAAGAAATTCCTAGGGACTGGTCTCTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR TCA 90 bp | TCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACAATCTTGAGGACCAACGAGTGCTGGCCTCCTTaGACAGAGGTGGGAAGAATT | + |
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Preference number: 4 (lower is better) Translates to: SLHYCVQRTVLTTILRTNECWPP*TEVGRI Trigger: AATTCTTCCCACCTCTGTTCAAGGAGGCCAGCACTC...GTTGGTCCTCAAGATTGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR GCA 90 bp | TTGAAAAATGTCCAAAGCCATGTGGGTTCTCTGGATGAGAGACCAGTCCCTAGGTCATCAATAGTGAGATaGCGGAGACAGCTGAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: LKNVQSHVGSLDERPVPRSSIVR*RRQLSL Trigger: CAAACTCAGCTGTCTCCGGCATCTCACTATTGATGA...CCTAGGGACTGGTCTCTCATCCAGAGAACCCACATGGCTTTGGACATTTTTCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR GCA 90 bp | TCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACAATCTTGAGGACCAACTCTAAGTCCAGAGTCTaGAGGTTAGCTGCAACACGC | + |
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Preference number: 4 (lower is better) Translates to: SLHYCVQRTVLTTILRTNSKSRV*RLAATR Trigger: GCGTGTTGCAGCTAACCTGCAGACTCTGGACTTAGA...GTTGGTCCTCAAGATTGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CCA 90 bp | GACTACAATCTTGAGGACCAACTAATGACTGGAAGCACAGAGAGAATAGCAGGTTTGATGCTAGTGAGCTaGGTGCATTTGATCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: DYNLEDQLMTGSTERIAGLMLVS*VHLIRA Trigger: TGCCCTGATCAAATGCACCCAGCTCACTAGCATCAA...ACCTGCTATTCTCTCTGTGCTTCCAGTCATTAGTTGGTCCTCAAGATTGTAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR TCA 90 bp | GATGCAGAAGGGGGAAATATCAGAATATCCCCATTGCACATTGAGAGGTTATGTCTCTTTCCTTGTTCTTaGGTGGTCCTCCACTATTTG | + |
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Preference number: 4 (lower is better) Translates to: DAEGGNIRISPLHIERLCLFPCS*VVLHYL Trigger: CAAATAGTGGAGGACCACTCAAGAACAAGGAAAGAG...ACATAACCTCTCAATGTGCAATGGGGATATTCTGATATTTCCCCCTTCTGCATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR TCA 90 bp | TCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACAATCTTGAGGACCAACAGGTGCGTACTAGCATaGGTTTCTGAAGGTTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: SLHYCVQRTVLTTILRTNRCVLA*VSEGFS Trigger: TGAGAAACCTTCAGAAACTCATGCTAGTACGCACCT...GTTGGTCCTCAAGATTGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR TCA 90 bp | GACCATTGTTTCATCACATTGAAAAATGTCCAAAGCCATGTGGGTTCTCTGGATGCTTCTCCTCTTGAGTaGAAGTCCTTGTTCCAAAGG | + |
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Preference number: 4 (lower is better) Translates to: DHCFITLKNVQSHVGSLDASPLE*KSLFQR Trigger: CCTTTGGAACAAGGACTTTCACTCAAGAGGAGAAGC...ATCCAGAGAACCCACATGGCTTTGGACATTTTTCAATGTGATGAAACAATGGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR GCA 90 bp | GCAGATGCAGAAGGGGGAAATATCAGAATATCCCCATTGCACATTGAGAGGTTACTTAGACACTTCTACTaGTCCTATCTCCAACTTCTC | + |
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Preference number: 4 (lower is better) Translates to: ADAEGGNIRISPLHIERLLRHFY*SYLQLL Trigger: GAGAAGTTGGAGATAGGAGCAGTAGAAGTGTCTAAG...TAACCTCTCAATGTGCAATGGGGATATTCTGATATTTCCCCCTTCTGCATCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR GCA 90 bp | GATTTGGACCATTGTTTCATCACATTGAAAAATGTCCAAAGCCATGTGGGTTCTCACACTGAATTGGCCTaGCTGACTTCCATGAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: DLDHCFITLKNVQSHVGSHTELA*LTSMSL Trigger: CAAACTCATGGAAGTCAGGCAGGCCAATTCAGTGTG...AGAACCCACATGGCTTTGGACATTTTTCAATGTGATGAAACAATGGTCCAAATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| 3UTR CAA 72 bp | GCAGATGCAGAAGGGGGAAATATCAGAATATCCCCATaGCACATTGAGAGGTTATGTGAAACAAGGTTAAAC | + |
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Preference number: 4 (lower is better) Translates to: ADAEGGNIRISP*HIERLCETRLN Trigger: GTTTAACCTTGTTTCACATAACCTCTCAATGTGCAATGGGGATATTCTGATATTTCCCCCTTCTGCATCTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR TCA 90 bp | GATTTGGACCATTGTTTCATCACATTGAAAAATGTCCAAAGCCATGTGGGTTCTATATCTAAGGAAGCATaGTGCTGTGCATCCCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: DLDHCFITLKNVQSHVGSISKEA*CCASLK Trigger: CTTCAGGGATGCACAGCATCATGCTTCCTTAGATAT...AGAACCCACATGGCTTTGGACATTTTTCAATGTGATGAAACAATGGTCCAAATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CCA 90 bp | TCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACAATCTTGAGGACCAACATAAAGGAAAGGTCATaGAACAGCTTCAAACGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SLHYCVQRTVLTTILRTNIKERS*NSFKRS Trigger: AGAGCGTTTGAAGCTGTTCCATGACCTTTCCTTTAT...GTTGGTCCTCAAGATTGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR GCA 90 bp | GATTTGGACCATTGTTTCATCACATTGAAAAATGTCCAAAGCCATGTGGGTTCTTGGTCCTCCACTATTTaGTTCTTAGGCAAAGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: DLDHCFITLKNVQSHVGSWSSTI*FLGKVP Trigger: AGGAACTTTGCCTAAGAAGCAAATAGTGGAGGACCA...AGAACCCACATGGCTTTGGACATTTTTCAATGTGATGAAACAATGGTCCAAATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CCA 90 bp | CCTATCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACAATCTTGAGGACTCCAATAACAGTGTTTaGTGTTTATCCTCATGCAGA | + |
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Preference number: 4 (lower is better) Translates to: PIPPLLCTKNCSDYNLEDSNNSV*CLSSCR Trigger: TCTGCATGAGGATAAACACCAAACACTGTTATTGGA...GTCCTCAAGATTGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGATAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR GCA 90 bp | TGTACAAAGAACTGTTCTGACTACAATCTTGAGGACCAACTAATGACTGGAAGCTGGTGTTTATCCTCATaGAGAGAAGACATAAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: CTKNCSDYNLEDQLMTGSWCLSS*REDIKE Trigger: TTCCTTTATGTCTTCTCTGCATGAGGATAAACACCA...GCTTCCAGTCATTAGTTGGTCCTCAAGATTGTAGTCAGAACAGTTCTTTGTACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | GACCCACCCACCAGGCAGATGCAGAAGGGGGAAATATCAGAATATCCCCATTGCCGGAGACAGCTGAGTTaGCAGAACAGAGAAATGATC | + |
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Preference number: 5 (lower is better) Translates to: DPPTRQMQKGEISEYPHCRRQLS*QNREMI Trigger: GATCATTTCTCTGTTCTGCAAACTCAGCTGTCTCCG...GCAATGGGGATATTCTGATATTTCCCCCTTCTGCATCTGCCTGGTGGGTGGGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | CCTATCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACAATCTTGAGGACGTGAGCTGGGTGCATTaGATCAGGGCAGGAAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: PIPPLLCTKNCSDYNLEDVSWVH*IRAGRR Trigger: CCTTCTTCCTGCCCTGATCAAATGCACCCAGCTCAC...GTCCTCAAGATTGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGATAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS CCA 90 bp | GTTTGGTGTTTATCCTCATGCAGAGAAGACATAAAGGAAAGGTCATaGAACAGCTTCAAACGCTCTTTCCTTGTTCTTGAGTGGTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: VWCLSSCREDIKERS*NSFKRSFLVLEWSS Trigger: GGAGGACCACTCAAGAACAAGGAAAGAGCGTTTGAAGCTGTTCCATGACCTTTCCTTTATGTCTTCTCTGCATGAGGATAAACACCAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | CCTATCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACAATCTTGAGGACTCAAACGCTCTTTCCTaGTTCTTGAGTGGTCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: PIPPLLCTKNCSDYNLEDSNALS*FLSGPP Trigger: TGGAGGACCACTCAAGAACAAGGAAAGAGCGTTTGA...GTCCTCAAGATTGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGATAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | TCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACAATCTTGAGGACCAACGCTCTTTCCTTGTTCTaGAGTGGTCCTCCACTATTT | + |
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Preference number: 5 (lower is better) Translates to: SLHYCVQRTVLTTILRTNALSLF*SGPPLF Trigger: AAATAGTGGAGGACCACTCAAGAACAAGGAAAGAGC...GTTGGTCCTCAAGATTGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | GATTTGGACCATTGTTTCATCACATTGAAAAATGTCCAAAGCCATGTGGGTTCTGTGGTCCTCCACTATTaGCTTCTTAGGCAAAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: DLDHCFITLKNVQSHVGSVVLHY*LLRQSS Trigger: GGAACTTTGCCTAAGAAGCAAATAGTGGAGGACCAC...AGAACCCACATGGCTTTGGACATTTTTCAATGTGATGAAACAATGGTCCAAATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | GGACCATTGTTTCATCACATTGAAAAATGTCCAAAGCCATGTGGGTTCTCTGGAAACAGAGAAATGATCTaGCTGATGTTCTGCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GPLFHHIEKCPKPCGFSGNREMI*LMFCFS Trigger: GGAGAAGCAGAACATCAGCAAGATCATTTCTCTGTT...TCCAGAGAACCCACATGGCTTTGGACATTTTTCAATGTGATGAAACAATGGTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS TCA 90 bp | ATAACGATTATCACAGTCATAACAGGAAGAGGAACCAAAGCACACTaGATTGGCCTGCCTGACTTCCATGAGTTTGTTCATAAGTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: ITIITVITGRGTKAH*IGLPDFHEFVHKFR Trigger: TCTGAACTTATGAACAAACTCATGGAAGTCAGGCAGGCCAATTCAGTGTGCTTTGGTTCCTCTTCCTGTTATGACTGTGATAATCGTTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | GTTAAACATCCTATCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACAATAACTCGTCCTTTCCTTaGCCCACTCCAATAACAGTG | + |
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Preference number: 5 (lower is better) Translates to: VKHPIPPLLCTKNCSDYNNSSFP*PTPITV Trigger: CACTGTTATTGGAGTGGGCAAAGGAAAGGACGAGTT...ATTGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGATAGGATGTTTAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | AGGTTAAACATCCTATCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACATTCAGTTTCAACTCCTaGATGAGCTCTGGCTGTAGA | + |
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Preference number: 5 (lower is better) Translates to: RLNILSLHYCVQRTVLTTFSFNS*MSSGCR Trigger: TCTACAGCCAGAGCTCATCAAGGAGTTGAAACTGAA...TGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGATAGGATGTTTAACCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | TACAATCTTGAGGACCAACTAATGACTGGAAGCACAGAGAGAATAGCAGGTTTTTCATTGTCATACAAATaGATGCTAGTGAGCTGGGTG | + |
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Preference number: 5 (lower is better) Translates to: YNLEDQLMTGSTERIAGFSLSYK*MLVSWV Trigger: CACCCAGCTCACTAGCATCAATTTGTATGACAATGA...AAAACCTGCTATTCTCTCTGTGCTTCCAGTCATTAGTTGGTCCTCAAGATTGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | GGACCATTGTTTCATCACATTGAAAAATGTCCAAAGCCATGTGGGTTCTCTGGACTGACTTCCATGAGTTaGTTCATAAGTTCAGAACAA | + |
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Preference number: 5 (lower is better) Translates to: GPLFHHIEKCPKPCGFSGLTSMS*FISSEQ Trigger: TTGTTCTGAACTTATGAACAAACTCATGGAAGTCAG...TCCAGAGAACCCACATGGCTTTGGACATTTTTCAATGTGATGAAACAATGGTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS-3UTR CAA 90 bp | AGGTTAAACATCCTATCCCTCCATTACTGTGTACAAAGAACTGTTCTGACTACATCCTCGGAGATGTCATaGTCATACAAATTGATGCTA | + |
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Preference number: 5 (lower is better) Translates to: RLNILSLHYCVQRTVLTTSSEMS*SYKLML Trigger: TAGCATCAATTTGTATGACAATGACATCTCCGAGGA...TGTAGTCAGAACAGTTCTTTGTACACAGTAATGGAGGGATAGGATGTTTAACCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS CCA 72 bp | AGAGAGCTGGCACAGGGTGATCTTGAGGGACACCAATaGGGCCTCCAGACACCTGAGCAACTCTTTCATCTG | + |
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Preference number: 6 (lower is better) Translates to: RELAQGDLEGHQ*GLQTPEQLFHL Trigger: CAGATGAAAGAGTTGCTCAGGTGTCTGGAGGCCCCATTGGTGTCCCTCAAGATCACCCTGTGCCAGCTCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS CCA 72 bp | ACCTCTGATGGAGCAGGATACATTTCTGTGGTCAGCTaGCTCAGATTGGTAGTGCGGTGCAAAAAGTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: TSDGAGYISVVS*LRLVVRCKKFS Trigger: GGAGAACTTTTTGCACCGCACTACCAATCTGAGCCAGCTGACCACAGAAATGTATCCTGCTCCATCAGAGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS TCA 72 bp | ATCACAGTCATAACAGGAAGAGGAACCAAAGCACACTaGATTGGCCTGCCTGACTTCCATGAGTTTGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: ITVITGRGTKAH*IGLPDFHEFVH Trigger: ATGAACAAACTCATGGAAGTCAGGCAGGCCAATTCAGTGTGCTTTGGTTCCTCTTCCTGTTATGACTGTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS CCA 72 bp | TGGAACAGCTTCAAACGCTCTTTCCTTGTTCTTGAGTaGTCCTCCACTATTTGCTTCTTAGGCAAAGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: WNSFKRSFLVLE*SSTICFLGKVP Trigger: AGGAACTTTGCCTAAGAAGCAAATAGTGGAGGACCACTCAAGAACAAGGAAAGAGCGTTTGAAGCTGTTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS CAA 72 bp | ACATCATCAATAGTGAGATGCCGGAGACAGCTGAGTTaGCAGAACAGAGAAATGATCTTGCTGATGTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: TSSIVRCRRQLS*QNREMILLMFC Trigger: GCAGAACATCAGCAAGATCATTTCTCTGTTCTGCAAACTCAGCTGTCTCCGGCATCTCACTATTGATGATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS CCA 72 bp | CTCGTCCTTTCCTTTGCCCACTCCAATAACAGTGTTTaGTGTTTATCCTCATGCAGAGAAGACATAAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: LVLSFAHSNNSV*CLSSCREDIKE Trigger: TTCCTTTATGTCTTCTCTGCATGAGGATAAACACCAAACACTGTTATTGGAGTGGGCAAAGGAAAGGACGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS TCA 72 bp | GTCCTTGTTCCAAAGGTGCGTACTAGCATGAGTTTCTaGAGGTTTCTCATCTTTCTAATGAAAGGTACGAAT | + |
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Preference number: 6 (lower is better) Translates to: VLVPKVRTSMSF*RFLIFLMKGTN Trigger: ATTCGTACCTTTCATTAGAAAGATGAGAAACCTTCAGAAACTCATGCTAGTACGCACCTTTGGAACAAGGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS CAA 72 bp | CTCATCTTTCTAATGAAAGGTACGAATTTTGCCAGTTaGGACAGATTCCCCACTGTATTCAGTTTCAACTCC | + |
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Preference number: 6 (lower is better) Translates to: LIFLMKGTNFAS*DRFPTVFSFNS Trigger: GGAGTTGAAACTGAATACAGTGGGGAATCTGTCCAAACTGGCAAAATTCGTACCTTTCATTAGAAAGATGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS CAA 72 bp | TTGGACAGATTCCCCACTGTATTCAGTTTCAACTCCTaGATGAGCTCTGGCTGTAGAAATTTTAATACATTC | + |
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Preference number: 6 (lower is better) Translates to: LDRFPTVFSFNS*MSSGCRNFNTF Trigger: GAATGTATTAAAATTTCTACAGCCAGAGCTCATCAAGGAGTTGAAACTGAATACAGTGGGGAATCTGTCCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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| CDS GCA 72 bp | AAGGTTTCTCATCTTTCTAATGAAAGGTACGAATTTTaGCAGTTTGGACAGATTCCCCACTGTATTCAGTTT | + |
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Preference number: 6 (lower is better) Translates to: KVSHLSNERYEF*QFGQIPHCIQF Trigger: AAACTGAATACAGTGGGGAATCTGTCCAAACTGGCAAAATTCGTACCTTTCATTAGAAAGATGAGAAACCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026957.4 |
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