Pregenerated sensors for PRAMEL6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025838Ensembl transcript IDs: ENSMUST00000026956.4, ENSMUST00000111572.8
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCGCAGGGTACAGCTCCTaGGTCAGCTGGCTCAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: ANKDIHIHSAQFLVPEATAGYSS*VSWLSL Trigger: CAAACTGAGCCAGCTGACCCAGGAGCTGTACCCTGC...GGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | AGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCTTTGTCTCTTGCCCACTaGAAGAGGGTGGGTAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: RTSTYIVLNSWYQKQPYSLSLAH*KRVGRE Trigger: CTCCCTACCCACCCTCTTTCAGTGGGCAAGAGACAA...AGAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | TACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGACTTCAGGCCACCACTaGCTCAGCTGTAGCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: YMQIRTSTYIVLNSWYQKTSGHH*LSCSSR Trigger: CCTGGAGCTACAGCTGAGTCAGTGGTGGCCTGAAGT...CTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | AAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCCAGGTCTCCACTGGCTaGTTCTGTGCCACGATCTGT | + |
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Preference number: 4 (lower is better) Translates to: KDIHIHSAQFLVPEATLFQVSTG*FCATIC Trigger: ACAGATCGTGGCACAGAAGCAGCCAGTGGAGACCTG...GAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | AATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTAGCAGGGTACAGCTCCTaGGTCAGCTGGCTCAGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: NKDIHIHSAQFLVPEATLAGYSS*VSWLSL Trigger: CAAACTGAGCCAGCTGACCCAGGAGCTGTACCCTGC...TAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | CAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTTGCACCTACTGGAATaGACCTTCCCTGTTACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: QIRTSTYIVLNSWYQKQPLHLLE*TFPVTR Trigger: CCTGGTAACAGGGAAGGTTCATTCCAGTAGGTGCAA...AGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | TTATTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAACTTCAGGCCACCACTaGCTCAGCTGTAGCTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LLHANKDIHIHSAQFLVPTSGHH*LSCSSR Trigger: CCTGGAGCTACAGCTGAGTCAGTGGTGGCCTGAAGT...TGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | TTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAACAGGTCTCCACTGGCTaGTTCTGTGCCACGATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: LHANKDIHIHSAQFLVPEQVSTG*FCATIC Trigger: ACAGATCGTGGCACAGAAGCAGCCAGTGGAGACCTG...TTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | CATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCATGCCACGATCTGTGCTaGGCAGTTATCTTCATGGGA | + |
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Preference number: 4 (lower is better) Translates to: HANKDIHIHSAQFLVPEACHDLC*AVIFMG Trigger: TCCCATGAAGATAACTGCCCAGCACAGATCGTGGCA...TGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | AAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCTGCCACGATCTGTGCTaGGCAGTTATCTTCATGGGA | + |
|
Preference number: 4 (lower is better) Translates to: KDIHIHSAQFLVPEATLFCHDLC*AVIFMG Trigger: TCCCATGAAGATAACTGCCCAGCACAGATCGTGGCA...GAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | TTATTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAAGGGCAGGTCTCCACTaGCTGCTTCTGTGCCACGAT | + |
|
Preference number: 4 (lower is better) Translates to: LLHANKDIHIHSAQFLVPRAGLH*LLLCHD Trigger: ATCGTGGCACAGAAGCAGCCAGTGGAGACCTGCCCT...TGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | ATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAAGGAGACTGCCAAAGTTaGAGAGCAGAGAAGGCAACG | + |
|
Preference number: 4 (lower is better) Translates to: MQIRTSTYIVLNSWYQKQGDCQS*RAEKAT Trigger: CGTTGCCTTCTCTGCTCTCCAACTTTGGCAGTCTCC...TTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | ATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATGGAGACTGCCAAAGTTaGAGAGCAGAGAAGGCAACG | + |
|
Preference number: 4 (lower is better) Translates to: IRTSTYIVLNSWYQKQPYGDCQS*RAEKAT Trigger: CGTTGCCTTCTCTGCTCTCCAACTTTGGCAGTCTCC...ATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | AGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCTCCAGGCAGACACCATTaGAATCAGGACCTTTGTATG | + |
|
Preference number: 4 (lower is better) Translates to: RTSTYIVLNSWYQKQPYSPGRHH*NQDLCM Trigger: CATACAAAGGTCCTGATTGCAATGGTGTCTGCCTGG...AGAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | GCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCCTCCAGAAGTCATGGTaGACATTCCTCCTCAAATCA | + |
|
Preference number: 4 (lower is better) Translates to: ANKDIHIHSAQFLVPEATLQKSW*TFLLKS Trigger: TGATTTGAGGAGGAATGTGCACCATGACTTCTGGAG...GGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | AAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCTCATCGAAACTCTCCTaGGTGAGTTCAAAGTCGGTC | + |
|
Preference number: 4 (lower is better) Translates to: KDIHIHSAQFLVPEATLFSSKLS*VSSKSV Trigger: GACCGACTTTGAACTCACGCAGGAGAGTTTCGATGA...GAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | TACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCTGGGAATAGATGAATaGGCAGTTCCTCCAGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: YMQIRTSTYIVLNSWYQKLGIDE*AVPPEQ Trigger: CTGCTCTGGAGGAACTGCCCATTCATCTATTCCCAG...CTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | CAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTGCCACTCGTCTTCCTaGTCTTCTTCACAAGCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: QIRTSTYIVLNSWYQKQPCHSSS*SSSQAV Trigger: TACTGCTTGTGAAGAAGACCAGGAAGACGAGTGGCA...AGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | CATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCATGCCACTCGTCTTCCTaGTCTTCTTCACAAGCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: HANKDIHIHSAQFLVPEACHSSS*SSSQAV Trigger: TACTGCTTGTGAAGAAGACCAGGAAGACGAGTGGCA...TGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | ATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAAATCTCTGGGAATAGATaGATGGGCAGTTCCTCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: MQIRTSTYIVLNSWYQKQISGNR*MGSSSR Trigger: TCTGGAGGAACTGCCCATTCATCTATTCCCAGAGAT...TTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | TACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGATCTCTGGGAATAGATaGATGGGCAGTTCCTCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: YMQIRTSTYIVLNSWYQKISGNR*MGSSSR Trigger: TCTGGAGGAACTGCCCATTCATCTATTCCCAGAGAT...CTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | TATTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGTTGCACCTACTGGAATaGACCTTCCCTGTTACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: YYMQIRTSTYIVLNSWYQLHLLE*TFPVTR Trigger: CCTGGTAACAGGGAAGGTTCATTCCAGTAGGTGCAA...CTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | TACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGATGAGGGCTTTGAAATaGGGGTCTGTCATTCCACAC | + |
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Preference number: 4 (lower is better) Translates to: YMQIRTSTYIVLNSWYQKMRALK*GSVIPH Trigger: GTGTGGAATGACAGACCCTCATTTCAAAGCCCTCAT...CTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | AGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCTCAACCCATCAAGCACTaGTTTCAAAGTCTCCAGATG | + |
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Preference number: 4 (lower is better) Translates to: RTSTYIVLNSWYQKQPYSQPIKH*FQSLQM Trigger: CATCTGGAGACTTTGAAAGCAGTGCTTGATGGGTTG...AGAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | ATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTCCAGAGCAGAAATaGCTAAAGCTTCCTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: MQIRTSTYIVLNSWYQKQPPEQK*LKLPPS Trigger: TGAAGGAGGAAGCTTTAGCCATTTCTGCTCTGGAGG...TTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | TATTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGCTGGGAATAGATGAATaGGCAGTTCCTCCAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: YYMQIRTSTYIVLNSWYQLGIDE*AVPPEQ Trigger: CTGCTCTGGAGGAACTGCCCATTCATCTATTCCCAG...CTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | CATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAATGCTCCAGAAGTCATaGTGCACATTCCTCCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: HANKDIHIHSAQFLVPEAMLQKS*CTFLLK Trigger: TTTGAGGAGGAATGTGCACCATGACTTCTGGAGCAT...TGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | AAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCTCAGGTTCAGATGCTTaGGCTTACAAATATTCGGAC | + |
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Preference number: 4 (lower is better) Translates to: KDIHIHSAQFLVPEATLFSGSDA*AYKYSD Trigger: GTCCGAATATTTGTAAGCTCAAGCATCTGAACCTGA...GAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | TTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAACCAGGCAGACACCATTaGAATCAGGACCTTTGTATG | + |
|
Preference number: 4 (lower is better) Translates to: LHANKDIHIHSAQFLVPEPGRHH*NQDLCM Trigger: CATACAAAGGTCCTGATTGCAATGGTGTCTGCCTGG...TTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | TTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAATCATCGAAACTCTCCTaGGTGAGTTCAAAGTCGGTC | + |
|
Preference number: 4 (lower is better) Translates to: LHANKDIHIHSAQFLVPESSKLS*VSSKSV Trigger: GACCGACTTTGAACTCACGCAGGAGAGTTTCGATGA...TTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | AAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCTCCAGTTCCAGAATTTaGAGGGTACTTGTGACTTTC | + |
|
Preference number: 4 (lower is better) Translates to: KDIHIHSAQFLVPEATLFSSSRI*RVLVTF Trigger: GAAAGTCACAAGTACCCTGCAAATTCTGGAACTGGA...GAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | ATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAAGAGACTTTCTTGGGCTaGCTTTTGGCCTTAAGTATG | + |
|
Preference number: 4 (lower is better) Translates to: MQIRTSTYIVLNSWYQKQETFLG*LLALSM Trigger: CATACTTAAGGCCAAAAGGCAGCCCAAGAAAGTCTC...TTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | TACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGTCCAGTTCCAGAATTTaGAGGGTACTTGTGACTTTC | + |
|
Preference number: 4 (lower is better) Translates to: YMQIRTSTYIVLNSWYQKSSSRI*RVLVTF Trigger: GAAAGTCACAAGTACCCTGCAAATTCTGGAACTGGA...CTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | TTATTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCACCTCCAGAGCAGAAATaGCTAAAGCTTCCTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: LLHANKDIHIHSAQFLVPPPEQK*LKLPPS Trigger: TGAAGGAGGAAGCTTTAGCCATTTCTGCTCTGGAGG...TGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | ATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAATCTAACATGAGTGTGTaGAGATTATTCATTCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: MQIRTSTYIVLNSWYQKQSNMSV*RLFIPS Trigger: GGAGGGAATGAATAATCTTCACACACTCATGTTAGA...TTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | TATTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGTCAGGTTCAGATGCTTaGGCTTACAAATATTCGGAC | + |
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Preference number: 4 (lower is better) Translates to: YYMQIRTSTYIVLNSWYQSGSDA*AYKYSD Trigger: GTCCGAATATTTGTAAGCTCAAGCATCTGAACCTGA...CTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | TTATTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCACAACCCATCAAGCACTaGTTTCAAAGTCTCCAGATG | + |
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Preference number: 4 (lower is better) Translates to: LLHANKDIHIHSAQFLVPQPIKH*FQSLQM Trigger: CATCTGGAGACTTTGAAAGCAGTGCTTGATGGGTTG...TGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAATAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR GCA 90 bp | TTATTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAGACTTTCTTGGGCTaGCTTTTGGCCTTAAGTATG | + |
|
Preference number: 4 (lower is better) Translates to: LLHANKDIHIHSAQFLVPETFLG*LLALSM Trigger: CATACTTAAGGCCAAAAGGCAGCCCAAGAAAGTCTC...TGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | CATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCATACAGCATAGATGAATaGAAGATTTTCTCTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: HANKDIHIHSAQFLVPEAYSIDE*KIFSPG Trigger: TCCAGGAGAGAAAATCTTCCATTCATCTATGCTGTA...TGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | ATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAATCAATCCCTCTAACATaGGTGTGTGAAGATTATTCA | + |
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Preference number: 4 (lower is better) Translates to: MQIRTSTYIVLNSWYQKQSIPLT*VCEDYS Trigger: TGAATAATCTTCACACACTCATGTTAGAGGGATTGA...TTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR TCA 90 bp | TTATTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCATCAATCCCTCTAACATaGGTGTGTGAAGATTATTCA | + |
|
Preference number: 4 (lower is better) Translates to: LLHANKDIHIHSAQFLVPSIPLT*VCEDYS Trigger: TGAATAATCTTCACACACTCATGTTAGAGGGATTGA...TGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAATAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CCA 90 bp | TTATTACATGCAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCATACAGCATAGATGAATaGAAGATTTTCTCTCCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LLHANKDIHIHSAQFLVPYSIDE*KIFSPG Trigger: TCCAGGAGAGAAAATCTTCCATTCATCTATGCTGTA...TGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTGCATGTAATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS GCA 90 bp | AGGGTTAGGGCAGGTCTCCACTGGCTGCTTCTGTGCCACGATCTGTaGTGGGCAGTTATCTTCATGGGATCCAGTCTGTATGCTCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: RVRAGLHWLLLCHDL*WAVIFMGSSLYAPE Trigger: TTCTGGAGCATACAGACTGGATCCCATGAAGATAACTGCCCAGCACAGATCGTGGCACAGAAGCAGCCAGTGGAGACCTGCCCTAACCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CCA 90 bp | AAGTTGGAGAGCAGAGAAGGCAACGTGCTTTGCCACTCGTCTTCCTaGTCTTCTTCACAAGCAGTAAATCTGAAGGGCTTCAATCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: KLESREGNVLCHSSS*SSSQAVNLKGFNPS Trigger: AGAGGGATTGAAGCCCTTCAGATTTACTGCTTGTGAAGAAGACCAGGAAGACGAGTGGCAAAGCACGTTGCCTTCTCTGCTCTCCAACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CCA 90 bp | GAAGGTAGATATCATTCAAATAGAGATTCTGGAGACTGCCAAAGTTaGAGAGCAGAGAAGGCAACGTGCTTTGCCACTCGTCTTCCTGGT | + |
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Preference number: 5 (lower is better) Translates to: EGRYHSNRDSGDCQS*RAEKATCFATRLPG Trigger: ACCAGGAAGACGAGTGGCAAAGCACGTTGCCTTCTCTGCTCTCCAACTTTGGCAGTCTCCAGAATCTCTATTTGAATGATATCTACCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CCA 90 bp | AGACTGGTGAGGCACAACTGTTCAGCTTCCTACAGCATAGATGAATaGAAGATTTTCTCTCCTGGATCCACTGCATCAAGTATATGGTCC | + |
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Preference number: 5 (lower is better) Translates to: RLVRHNCSASYSIDE*KIFSPGSTASSIWS Trigger: GGACCATATACTTGATGCAGTGGATCCAGGAGAGAAAATCTTCCATTCATCTATGCTGTAGGAAGCTGAACAGTTGTGCCTCACCAGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CAA 90 bp | AAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCTGGAGACTGCCAAAGTaGGAGAGCAGAGAAGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: KDIHIHSAQFLVPEATLFWRLPK*ESREGN Trigger: GTTGCCTTCTCTGCTCTCCAACTTTGGCAGTCTCCA...GAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CAA 90 bp | AGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCTTGGAGACTGCCAAAGTaGGAGAGCAGAGAAGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: RTSTYIVLNSWYQKQPYSWRLPK*ESREGN Trigger: GTTGCCTTCTCTGCTCTCCAACTTTGGCAGTCTCCA...AGAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS TCA 90 bp | TTAGAGACTGGTGAGGCACAACTGTTCAGCTTCCTACAGCATAGATaGATGGAAGATTTTCTCTCCTGGATCCACTGCATCAAGTATATG | + |
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Preference number: 5 (lower is better) Translates to: LETGEAQLFSFLQHR*MEDFLSWIHCIKYM Trigger: CATATACTTGATGCAGTGGATCCAGGAGAGAAAATCTTCCATTCATCTATGCTGTAGGAAGCTGAACAGTTGTGCCTCACCAGTCTCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS TCA 90 bp | CATAGCCTACATCAGATAGAAACAGAGCATTCAGGTTCAGATGCTTaGGCTTACAAATATTCGGACAATTTGGCAGGCACTCGAAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: HSLHQIETEHSGSDA*AYKYSDNLAGTRSL Trigger: CAGACTTCGAGTGCCTGCCAAATTGTCCGAATATTTGTAAGCTCAAGCATCTGAACCTGAATGCTCTGTTTCTATCTGATGTAGGCTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CAA 90 bp | AGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTTATTCTGTAAAAGAGACTTTCTaGGGCTGCCTTTTGGCCTTA | + |
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Preference number: 5 (lower is better) Translates to: RTSTYIVLNSWYQKQPYSVKETF*GCLLAL Trigger: TAAGGCCAAAAGGCAGCCCAAGAAAGTCTCTTTTAC...AGAATAAGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS-3UTR CAA 90 bp | CAAATAAGGACATCCACATACATAGTGCTCAATTCTTGGTACCAGAAGCAACCTGTAAAAGAGACTTTCTaGGGCTGCCTTTTGGCCTTA | + |
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Preference number: 5 (lower is better) Translates to: QIRTSTYIVLNSWYQKQPVKETF*GCLLAL Trigger: TAAGGCCAAAAGGCAGCCCAAGAAAGTCTCTTTTAC...AGGTTGCTTCTGGTACCAAGAATTGAGCACTATGTATGTGGATGTCCTTATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS GCA 90 bp | AAACACTTCAAGCAGGTTTGTGTAGTAAAAGAGACTTTCTTGGGCTaGCTTTTGGCCTTAAGTATGTTCAGCAGTTCTGGACAAAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: KHFKQVCVVKETFLG*LLALSMFSSSGQSF Trigger: GAAACTTTGTCCAGAACTGCTGAACATACTTAAGGCCAAAAGGCAGCCCAAGAAAGTCTCTTTTACTACACAAACCTGCTTGAAGTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CCA 90 bp | GACTTTCTTGGGCTGCCTTTTGGCCTTAAGTATGTTCAGCAGTTCTaGACAAAGTTTCTTAAATCTGTCTTTAAGTATCTTGTAATCCTC | + |
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Preference number: 5 (lower is better) Translates to: DFLGLPFGLKYVQQF*TKFLKSVFKYLVIL Trigger: GAGGATTACAAGATACTTAAAGACAGATTTAAGAAACTTTGTCCAGAACTGCTGAACATACTTAAGGCCAAAAGGCAGCCCAAGAAAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS TCA 72 bp | TACAGCTCCTGGGTCAGCTGGCTCAGTTTGGCTGTGTaGCAAAGAAGGGTCTTCAGGACACGCAGGGAGATA | + |
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Preference number: 6 (lower is better) Translates to: YSSWVSWLSLAV*QRRVFRTRREI Trigger: TATCTCCCTGCGTGTCCTGAAGACCCTTCTTTGTCACACAGCCAAACTGAGCCAGCTGACCCAGGAGCTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS GCA 72 bp | GGCCAGGCAGACACCATTGCAATCAGGACCTTTGTATaGCTATCAGTGAAGGCTACCTTGAACATCTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: GQADTIAIRTFV*LSVKATLNISG Trigger: CCCAGAGATGTTCAAGGTAGCCTTCACTGATAGGCATACAAAGGTCCTGATTGCAATGGTGTCTGCCTGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CCA 72 bp | TTCTGTGCCACGATCTGTGCTGGGCAGTTATCTTCATaGGATCCAGTCTGTATGCTCCAGAAGTCATGGTGC | + |
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Preference number: 6 (lower is better) Translates to: FCATICAGQLSS*DPVCMLQKSWC Trigger: GCACCATGACTTCTGGAGCATACAGACTGGATCCCATGAAGATAACTGCCCAGCACAGATCGTGGCACAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS GCA 72 bp | GGGTCTGTCATTCCACACCTCTCCAGTTCCAGAATTTaGAGGGTACTTGTGACTTTCTCAAGGATGAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: GSVIPHLSSSRI*RVLVTFSRMSP Trigger: AGGGCTCATCCTTGAGAAAGTCACAAGTACCCTGCAAATTCTGGAACTGGAGAGGTGTGGAATGACAGACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CCA 72 bp | AGCAGAGAAGGCAACGTGCTTTGCCACTCGTCTTCCTaGTCTTCTTCACAAGCAGTAAATCTGAAGGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: SREGNVLCHSSS*SSSQAVNLKGF Trigger: GAAGCCCTTCAGATTTACTGCTTGTGAAGAAGACCAGGAAGACGAGTGGCAAAGCACGTTGCCTTCTCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CAA 72 bp | AGGGTCTGTCATTCCACACCTCTCCAGTTCCAGAATTaGCAGGGTACTTGTGACTTTCTCAAGGATGAGCCC | + |
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Preference number: 6 (lower is better) Translates to: RVCHSTPLQFQN*QGTCDFLKDEP Trigger: GGGCTCATCCTTGAGAAAGTCACAAGTACCCTGCAAATTCTGGAACTGGAGAGGTGTGGAATGACAGACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS GCA 72 bp | GTGCTGGGCAGTTATCTTCATGGGATCCAGTCTGTATaGTCCAGAAGTCATGGTGCACATTCCTCCTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: VLGSYLHGIQSV*SRSHGAHSSSN Trigger: ATTTGAGGAGGAATGTGCACCATGACTTCTGGAGCATACAGACTGGATCCCATGAAGATAACTGCCCAGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CAA 72 bp | AAATGGCTAAAGCTTCCTCCTTCAGTAGATTGTCTCTaGCCCACTGAAAGAGGGTGGGTAGGGAGTCAACAC | + |
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Preference number: 6 (lower is better) Translates to: KWLKLPPSVDCL*PTERGWVGSQH Trigger: GTGTTGACTCCCTACCCACCCTCTTTCAGTGGGCAAGAGACAATCTACTGAAGGAGGAAGCTTTAGCCATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS TCA 72 bp | GGTGAGGCACAACTGTTCAGCTTCCTACAGCATAGATaGATGGAAGATTTTCTCTCCTGGATCCACTGCATC | + |
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Preference number: 6 (lower is better) Translates to: GEAQLFSFLQHR*MEDFLSWIHCI Trigger: GATGCAGTGGATCCAGGAGAGAAAATCTTCCATTCATCTATGCTGTAGGAAGCTGAACAGTTGTGCCTCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS TCA 72 bp | TCAGTGAAGGCTACCTTGAACATCTCTGGGAATAGATaGATGGGCAGTTCCTCCAGAGCAGAAATGGCTAAA | + |
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Preference number: 6 (lower is better) Translates to: SVKATLNISGNR*MGSSSRAEMAK Trigger: TTTAGCCATTTCTGCTCTGGAGGAACTGCCCATTCATCTATTCCCAGAGATGTTCAAGGTAGCCTTCACTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CCA 72 bp | GGAATAGATGAATGGGCAGTTCCTCCAGAGCAGAAATaGCTAAAGCTTCCTCCTTCAGTAGATTGTCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: GIDEWAVPPEQK*LKLPPSVDCLL Trigger: CAAGAGACAATCTACTGAAGGAGGAAGCTTTAGCCATTTCTGCTCTGGAGGAACTGCCCATTCATCTATTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CCA 72 bp | TATCATTCAAATAGAGATTCTGGAGACTGCCAAAGTTaGAGAGCAGAGAAGGCAACGTGCTTTGCCACTCGT | + |
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Preference number: 6 (lower is better) Translates to: YHSNRDSGDCQS*RAEKATCFATR Trigger: ACGAGTGGCAAAGCACGTTGCCTTCTCTGCTCTCCAACTTTGGCAGTCTCCAGAATCTCTATTTGAATGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CCA 72 bp | AGGCACAACTGTTCAGCTTCCTACAGCATAGATGAATaGAAGATTTTCTCTCCTGGATCCACTGCATCAAGT | + |
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Preference number: 6 (lower is better) Translates to: RHNCSASYSIDE*KIFSPGSTASS Trigger: ACTTGATGCAGTGGATCCAGGAGAGAAAATCTTCCATTCATCTATGCTGTAGGAAGCTGAACAGTTGTGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS GCA 72 bp | GAAGGTAGATATCATTCAAATAGAGATTCTGGAGACTaGCAAAGTTGGAGAGCAGAGAAGGCAACGTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: EGRYHSNRDSGD*QSWRAEKATCF Trigger: AAAGCACGTTGCCTTCTCTGCTCTCCAACTTTGGCAGTCTCCAGAATCTCTATTTGAATGATATCTACCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS GCA 72 bp | AAGCAGGTTTGTGTAGTAAAAGAGACTTTCTTGGGCTaGCTTTTGGCCTTAAGTATGTTCAGCAGTTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: KQVCVVKETFLG*LLALSMFSSSG Trigger: TCCAGAACTGCTGAACATACTTAAGGCCAAAAGGCAGCCCAAGAAAGTCTCTTTTACTACACAAACCTGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CAA 72 bp | CACTTCAAGCAGGTTTGTGTAGTAAAAGAGACTTTCTaGGGCTGCCTTTTGGCCTTAAGTATGTTCAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: HFKQVCVVKETF*GCLLALSMFSS Trigger: ACTGCTGAACATACTTAAGGCCAAAAGGCAGCCCAAGAAAGTCTCTTTTACTACACAAACCTGCTTGAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CAA 90 bp | GAATGTAAACACTTCAAGCAGGTTTGTGTAGTAAAAGAGACTTTCTaGGGCTGCCTTTTGGCCTTAAGTATGTTCAGCAGTTCTGGACAA | + |
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Preference number: 6 (lower is better) Translates to: ECKHFKQVCVVKETF*GCLLALSMFSSSGQ Trigger: TTGTCCAGAACTGCTGAACATACTTAAGGCCAAAAGGCAGCCCAAGAAAGTCTCTTTTACTACACAAACCTGCTTGAAGTGTTTACATTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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| CDS CCA 72 bp | GGGCTGCCTTTTGGCCTTAAGTATGTTCAGCAGTTCTaGACAAAGTTTCTTAAATCTGTCTTTAAGTATCTT | + |
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Preference number: 6 (lower is better) Translates to: GLPFGLKYVQQF*TKFLKSVFKYL Trigger: AAGATACTTAAAGACAGATTTAAGAAACTTTGTCCAGAACTGCTGAACATACTTAAGGCCAAAAGGCAGCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026956.4 ENSMUST00000111572.8 |
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