Pregenerated sensors for PRAMEL50 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096139

Ensembl transcript IDs: ENSMUST00000178552.2, ENSMUST00000201129.4

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	AAGTCTGCTCCCCATGTCAAGCTTAGCCTCCAAGATCCCAATTATTaGACATCCTTTCCTTTCCAAGTATCTTTACATTGCCTGAAGTCA	+
Preference number: 1 (lower is better) Translates to: KSAPHVKLSLQDPNY*TSFPFQVSLHCLKS Trigger: TGACTTCAGGCAATGTAAAGATACTTGGAAAGGAAAGGATGTGCAATAATTGGGATCTTGGAGGCTAAGCTTGACATGGGGAGCAGACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201129.4
3UTR GCA 72 bp	ATCTGTCCTGGCAGAGTCAATTCAAAACATCCAAGTTaGCTTTGTCAGTCCACAAGTCTGCTCCCCATGTCA	+
Preference number: 3 (lower is better) Translates to: ICPGRVNSKHPS*LCQSTSLLPMS Trigger: TGACATGGGGAGCAGACTTGTGGACTGACAAAGGCAACTTGGATGTTTTGAATTGACTCTGCCAGGACAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201129.4
3UTR GCA 72 bp	CCCCATGTCAAGCTTAGCCTCCAAGATCCCAATTATTaGACATCCTTTCCTTTCCAAGTATCTTTACATTGC	+
Preference number: 3 (lower is better) Translates to: PHVKLSLQDPNY*TSFPFQVSLHC Trigger: GCAATGTAAAGATACTTGGAAAGGAAAGGATGTGCAATAATTGGGATCTTGGAGGCTAAGCTTGACATGGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201129.4
CDS CCA 72 bp	CTTAAGTCTGCCAGCAAAGGCCCTCTGGAACAGTGCTaGGAAGAGCAGAAAAGGCACCTCCTCCAGACAGGA	+
Preference number: 6 (lower is better) Translates to: LKSASKGPLEQC*EEQKRHLLQTG Trigger: TCCTGTCTGGAGGAGGTGCCTTTTCTGCTCTTCCCAGCACTGTTCCAGAGGGCCTTTGCTGGCAGACTTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178552.2 ENSMUST00000201129.4
CDS CCA 72 bp	TGGGCCCACTTCAAGAAGTATGCTTGTGTTTCATCATaGCGGGGCCTGAGGCACAGGTCTGCTACCACCTTC	+
Preference number: 6 (lower is better) Translates to: WAHFKKYACVSS*RGLRHRSATTF Trigger: GAAGGTGGTAGCAGACCTGTGCCTCAGGCCCCGCCATGATGAAACACAAGCATACTTCTTGAAGTGGGCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178552.2 ENSMUST00000201129.4
CDS CCA 72 bp	TTCATGAGCTTCTTAAGTCTGCCAGCAAAGGCCCTCTaGAACAGTGCTGGGAAGAGCAGAAAAGGCACCTCC	+
Preference number: 6 (lower is better) Translates to: FMSFLSLPAKAL*NSAGKSRKGTS Trigger: GGAGGTGCCTTTTCTGCTCTTCCCAGCACTGTTCCAGAGGGCCTTTGCTGGCAGACTTAAGAAGCTCATGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178552.2 ENSMUST00000201129.4
CDS CAA 90 bp	CGAAGATTTCTCATCTGCCATAAGCAGGGAGCAAAACGGGCCAGATaGAACACATTCCACTCAGTGTTCAGTTCGAATTCCTCGATGTGC	+
Preference number: 6 (lower is better) Translates to: RRFLICHKQGAKRAR*NTFHSVFSSNSSMC Trigger: GCACATCGAGGAATTCGAACTGAACACTGAGTGGAATGTGTTCAATCTGGCCCGTTTTGCTCCCTGCTTATGGCAGATGAGAAATCTTCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178552.2 ENSMUST00000201129.4
CDS CCA 72 bp	TTTATACAGCACAAATGTAGGGAGTCCTTTCTCTGCTaGGCCCACTTCAAGAAGTATGCTTGTGTTTCATCA	+
Preference number: 6 (lower is better) Translates to: FIQHKCRESFLC*AHFKKYACVSS Trigger: TGATGAAACACAAGCATACTTCTTGAAGTGGGCCCAGCAGAGAAAGGACTCCCTACATTTGTGCTGTATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178552.2 ENSMUST00000201129.4

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