Pregenerated sensors for PRAMEL5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036749Ensembl transcript IDs: ENSMUST00000035757.13, ENSMUST00000105752.4
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCTTCCCTACTTCTAGGGTCCCTCATACTCAGAAAGTGCTGGAATaGACCCCTACAATTTTCAGATATAATTGCTGTTCAAGGGTTTGT | + |
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Preference number: 1 (lower is better) Translates to: PFPTSRVPHTQKVLE*TPTIFRYNCCSRVC Trigger: ACAAACCCTTGAACAGCAATTATATCTGAAAATTGTAGGGGTTCATTCCAGCACTTTCTGAGTATGAGGGACCCTAGAAGTAGGGAAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| 3UTR TCA 90 bp | ACAGTAAGGGGAGAGCAAAAAGGTGGATGCCATCTGCAGGGAGAATaGAACAGAGACCTCCTATTCAAGTCCATTATGATCTTTATAATG | + |
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Preference number: 1 (lower is better) Translates to: TVRGEQKGGCHLQGE*NRDLLFKSIMIFIM Trigger: CATTATAAAGATCATAATGGACTTGAATAGGAGGTCTCTGTTTCATTCTCCCTGCAGATGGCATCCACCTTTTTGCTCTCCCCTTACTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| 3UTR-3UTR GCA 90 bp | CCTATTCAAGTCCATTATGATCTTTATAATGTCCTCACTCTTTATCCCCTTCCCCTCATACTCAGAAAGTaGTGGAATGAACCCCTACAA | + |
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Preference number: 2 (lower is better) Translates to: PIQVHYDLYNVLTLYPLPLILRK*WNEPLQ Trigger: TTGTAGGGGTTCATTCCAGCACTTTCTGAGTATGAG...GGGAAGGGGATAAAGAGTGAGGACATTATAAAGATCATAATGGACTTGAATAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| 3UTR-3UTR CCA 90 bp | CAGCTTAATAGTGATAACAGTCTAATACAAAAATACTCCAAGGTTCAGTCAGACATACTCAGAAAGTGCTaGAATGAACCCCTACAATTT | + |
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Preference number: 2 (lower is better) Translates to: QLNSDNSLIQKYSKVQSDILRKC*NEPLQF Trigger: AAATTGTAGGGGTTCATTCCAGCACTTTCTGAGTAT...GTCTGACTGAACCTTGGAGTATTTTTGTATTAGACTGTTATCACTATTAAGCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| 3UTR TCA 72 bp | GGAGAGCAAAAAGGTGGATGCCATCTGCAGGGAGAATaGAACAGAGACCTCCTATTCAAGTCCATTATGATC | + |
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Preference number: 3 (lower is better) Translates to: GEQKGGCHLQGE*NRDLLFKSIMI Trigger: GATCATAATGGACTTGAATAGGAGGTCTCTGTTTCATTCTCCCTGCAGATGGCATCCACCTTTTTGCTCTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| 3UTR CCA 72 bp | TCCCTACTTCTAGGGTCCCTCATACTCAGAAAGTGCTaGAATGAACCCCTACAATTTTCAGATATAATTGCT | + |
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Preference number: 3 (lower is better) Translates to: SLLLGSLILRKC*NEPLQFSDIIA Trigger: AGCAATTATATCTGAAAATTGTAGGGGTTCATTCCAGCACTTTCTGAGTATGAGGGACCCTAGAAGTAGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | TTATCCCCTTCCCTACTTCTAGGGTCCCTCATACTCAGAAAGTGCTGGAATGAAGACTGGGAAGGGCCATaGTGCCACCATCAGGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: LSPSLLLGSLILRKCWNEDWEGP*CHHQAQ Trigger: CTGAGCCTGATGGTGGCAGCATGGCCCTTCCCAGTC...TTCATTCCAGCACTTTCTGAGTATGAGGGACCCTAGAAGTAGGGAAGGGGATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | GAACCCCTACAATTTTCAGATATAATTGCTGTTCAAGGGTTTGTCTGTACTGTAGACTGGGAAGGGCCATaGTGCCACCATCAGGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: EPLQFSDIIAVQGFVCTVDWEGP*CHHQAQ Trigger: CTGAGCCTGATGGTGGCAGCATGGCCCTTCCCAGTC...TACAGTACAGACAAACCCTTGAACAGCAATTATATCTGAAAATTGTAGGGGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | TTATCCCCTTCCCTACTTCTAGGGTCCCTCATACTCAGAAAGTGCTGGAATGAAGAGTCTCTTGAGACCTaGTCTCCATTTATCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: LSPSLLLGSLILRKCWNEESLET*SPFIRA Trigger: GGCTCTGATAAATGGAGAGCAGGTCTCAAGAGACTC...TTCATTCCAGCACTTTCTGAGTATGAGGGACCCTAGAAGTAGGGAAGGGGATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CCA 90 bp | TGTCCTCACTCTTTATCCCCTTCCCTACTTCTAGGGTCCCTCATACTCAGAAAGTCAGCAGAGCAGAGATaGTCAAGGCTTCATCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: CPHSLSPSLLLGSLILRKSAEQR*SRLHLS Trigger: TGAAAGATGAAGCCTTGACCATCTCTGCTCTGCTGA...CTTTCTGAGTATGAGGGACCCTAGAAGTAGGGAAGGGGATAAAGAGTGAGGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR TCA 90 bp | TTATCCCCTTCCCTACTTCTAGGGTCCCTCATACTCAGAAAGTGCTGGAATGAACTTCCTAGAAATCGATaGCTTGAAGGCTTGAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: LSPSLLLGSLILRKCWNELPRNR*LEGLKV Trigger: CACCTTCAAGCCTTCAAGTCATCGATTTCTAGGAAG...TTCATTCCAGCACTTTCTGAGTATGAGGGACCCTAGAAGTAGGGAAGGGGATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CCA 90 bp | CAGCTTAATAGTGATAACAGTCTAATACAAAAATACTCCAAGGTTCAGTCAGACTCCCACAGGAAGGACTaGGAAGGGCCATGCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: QLNSDNSLIQKYSKVQSDSHRKD*EGPCCH Trigger: GTGGCAGCATGGCCCTTCCCAGTCCTTCCTGTGGGA...GTCTGACTGAACCTTGGAGTATTTTTGTATTAGACTGTTATCACTATTAAGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | ATAGCAGGCTACTGGACCTCCCCAAGAAAGAGATACAGCTTAATAGTGATAACACCTCTCCTTCTTAATTaGTCAGAAGAATCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: IAGYWTSPRKRYSLIVITPLLLN*SEESRP Trigger: GGGCCTGGATTCTTCTGAGCAATTAAGAAGGAGAGG...TGTTATCACTATTAAGCTGTATCTCTTTCTTGGGGAGGTCCAGTAGCCTGCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | GGGAGAATGAAACAGAGACCTCCTATTCAAGTCCATTATGATCTTTATAATGTCAGTGGTGGGAAGAGTTaGACAGGCAGGTTCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: GRMKQRPPIQVHYDLYNVSGGKS*TGRFSR Trigger: TCTGCTGAACCTGCCTGTGCAACTCTTCCCACCACT...GACATTATAAAGATCATAATGGACTTGAATAGGAGGTCTCTGTTTCATTCTCCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | GAACCCCTACAATTTTCAGATATAATTGCTGTTCAAGGGTTTGTCTGTACTGTAAGTGGTGGGAAGAGTTaGACAGGCAGGTTCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: EPLQFSDIIAVQGFVCTVSGGKS*TGRFSR Trigger: TCTGCTGAACCTGCCTGTGCAACTCTTCCCACCACT...TACAGTACAGACAAACCCTTGAACAGCAATTATATCTGAAAATTGTAGGGGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | CAGCTTAATAGTGATAACAGTCTAATACAAAAATACTCCAAGGTTCAGTCAGACGTGAGGTTGGCCGTATaGTTCAGCAGCTTCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: QLNSDNSLIQKYSKVQSDVRLAV*FSSFFR Trigger: CCTGAAGAAGCTGCTGAAGCATACGGCCAACCTCAC...GTCTGACTGAACCTTGGAGTATTTTTGTATTAGACTGTTATCACTATTAAGCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | GGGAGAATGAAACAGAGACCTCCTATTCAAGTCCATTATGATCTTTATAATGTCCCTCTCCTTCTTAATTaGTCAGAAGAATCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: GRMKQRPPIQVHYDLYNVPLLLN*SEESRP Trigger: GGGCCTGGATTCTTCTGAGCAATTAAGAAGGAGAGG...GACATTATAAAGATCATAATGGACTTGAATAGGAGGTCTCTGTTTCATTCTCCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | GGGAGAATGAAACAGAGACCTCCTATTCAAGTCCATTATGATCTTTATAATGTCGAGTCTCTTGAGACCTaGTCTCCATTTATCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: GRMKQRPPIQVHYDLYNVESLET*SPFIRA Trigger: GGCTCTGATAAATGGAGAGCAGGTCTCAAGAGACTC...GACATTATAAAGATCATAATGGACTTGAATAGGAGGTCTCTGTTTCATTCTCCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR TCA 90 bp | ATAGCAGGCTACTGGACCTCCCCAAGAAAGAGATACAGCTTAATAGTGATAACAAATGTCGGCAGTACTTaGGGGAAAGATTCATTTTTA | + |
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Preference number: 4 (lower is better) Translates to: IAGYWTSPRKRYSLIVITNVGST*GKDSFL Trigger: TAAAAATGAATCTTTCCCTCAAGTACTGCCGACATT...TGTTATCACTATTAAGCTGTATCTCTTTCTTGGGGAGGTCCAGTAGCCTGCTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR TCA 90 bp | CTCAGAAAGTGCTGGAATGAACCCCTACAATTTTCAGATATAATTGCTGTTCAAGATGACTTGAAGGCTTaGAGGTGGTGTAACTCATGT | + |
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Preference number: 4 (lower is better) Translates to: LRKCWNEPLQFSDIIAVQDDLKA*RWCNSC Trigger: ACATGAGTTACACCACCTTCAAGCCTTCAAGTCATC...TTGAACAGCAATTATATCTGAAAATTGTAGGGGTTCATTCCAGCACTTTCTGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | GGGAGAATGAAACAGAGACCTCCTATTCAAGTCCATTATGATCTTTATAATGTCAAAATAGACCTGCTTTaGCTGCCTTACACCCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: GRMKQRPPIQVHYDLYNVKIDLL*LPYTLE Trigger: CTCAAGGGTGTAAGGCAGGCAAAGCAGGTCTATTTT...GACATTATAAAGATCATAATGGACTTGAATAGGAGGTCTCTGTTTCATTCTCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR GCA 90 bp | CTCAGAAAGTGCTGGAATGAACCCCTACAATTTTCAGATATAATTGCTGTTCAAAAAATAGACCTGCTTTaGCTGCCTTACACCCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: LRKCWNEPLQFSDIIAVQKIDLL*LPYTLE Trigger: CTCAAGGGTGTAAGGCAGGCAAAGCAGGTCTATTTT...TTGAACAGCAATTATATCTGAAAATTGTAGGGGTTCATTCCAGCACTTTCTGAG 40% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CCA 90 bp | GAACCCCTACAATTTTCAGATATAATTGCTGTTCAAGGGTTTGTCTGTACTGTATCAGCAGAGCAGAGATaGTCAAGGCTTCATCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: EPLQFSDIIAVQGFVCTVSAEQR*SRLHLS Trigger: TGAAAGATGAAGCCTTGACCATCTCTGCTCTGCTGA...TACAGTACAGACAAACCCTTGAACAGCAATTATATCTGAAAATTGTAGGGGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR TCA 90 bp | CAGCTTAATAGTGATAACAGTCTAATACAAAAATACTCCAAGGTTCAGTCAGACGATGACTTGAAGGCTTaGAGGTGGTGTAACTCATGT | + |
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Preference number: 4 (lower is better) Translates to: QLNSDNSLIQKYSKVQSDDDLKA*RWCNSC Trigger: ACATGAGTTACACCACCTTCAAGCCTTCAAGTCATC...GTCTGACTGAACCTTGGAGTATTTTTGTATTAGACTGTTATCACTATTAAGCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR TCA 90 bp | CCTATTCAAGTCCATTATGATCTTTATAATGTCCTCACTCTTTATCCCCTTCCCTTGTACAAATCTGTCTaGAATAACACTATGACCGTC | + |
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Preference number: 4 (lower is better) Translates to: PIQVHYDLYNVLTLYPLPLYKSV*NNTMTV Trigger: GACGGTCATAGTGTTATTTCAGACAGATTTGTACAA...GGGAAGGGGATAAAGAGTGAGGACATTATAAAGATCATAATGGACTTGAATAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR TCA 90 bp | CTCAGAAAGTGCTGGAATGAACCCCTACAATTTTCAGATATAATTGCTGTTCAAAATGTCGGCAGTACTTaGGGGAAAGATTCATTTTTA | + |
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Preference number: 4 (lower is better) Translates to: LRKCWNEPLQFSDIIAVQNVGST*GKDSFL Trigger: TAAAAATGAATCTTTCCCTCAAGTACTGCCGACATT...TTGAACAGCAATTATATCTGAAAATTGTAGGGGTTCATTCCAGCACTTTCTGAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR TCA 90 bp | CTCAGAAAGTGCTGGAATGAACCCCTACAATTTTCAGATATAATTGCTGTTCAATTGTACAAATCTGTCTaGAATAACACTATGACCGTC | + |
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Preference number: 4 (lower is better) Translates to: LRKCWNEPLQFSDIIAVQLYKSV*NNTMTV Trigger: GACGGTCATAGTGTTATTTCAGACAGATTTGTACAA...TTGAACAGCAATTATATCTGAAAATTGTAGGGGTTCATTCCAGCACTTTCTGAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CCA 90 bp | GGGAGAATGAAACAGAGACCTCCTATTCAAGTCCATTATGATCTTTATAATGTCATATATCCCAGTGTATaGACTTTATTGCCAATTCCT | + |
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Preference number: 4 (lower is better) Translates to: GRMKQRPPIQVHYDLYNVIYPSV*TLLPIP Trigger: AGGAATTGGCAATAAAGTCCATACACTGGGATATAT...GACATTATAAAGATCATAATGGACTTGAATAGGAGGTCTCTGTTTCATTCTCCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CCA 90 bp | CAGCTTAATAGTGATAACAGTCTAATACAAAAATACTCCAAGGTTCAGTCAGACATATATCCCAGTGTATaGACTTTATTGCCAATTCCT | + |
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Preference number: 4 (lower is better) Translates to: QLNSDNSLIQKYSKVQSDIYPSV*TLLPIP Trigger: AGGAATTGGCAATAAAGTCCATACACTGGGATATAT...GTCTGACTGAACCTTGGAGTATTTTTGTATTAGACTGTTATCACTATTAAGCTG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS GCA 90 bp | TGCTGCCACCATCAGGCTCAGGATCTTACGTTGTCTGCTGGTGAATaGATCCTTGAAGAGTGGTGGGAAGAGTTGCACAGGCAGGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: CCHHQAQDLTLSAGE*ILEEWWEELHRQVQ Trigger: CTGAACCTGCCTGTGCAACTCTTCCCACCACTCTTCAAGGATGCATTCACCAGCAGACAACGTAAGATCCTGAGCCTGATGGTGGCAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | TGTCCTCACTCTTTATCCCCTTCCCTACTTCTAGGGTCCCTCATACTCAGAAAGGAGTGGTGGGAAGAGTaGCACAGGCAGGTTCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: CPHSLSPSLLLGSLILRKEWWEE*HRQVQQ Trigger: CTGCTGAACCTGCCTGTGCAACTCTTCCCACCACTC...CTTTCTGAGTATGAGGGACCCTAGAAGTAGGGAAGGGGATAAAGAGTGAGGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | TGTCCTCACTCTTTATCCCCTTCCCTACTTCTAGGGTCCCTCATACTCAGAAAGGTCAGCTGTGTGAGGTaGGCCGTATGCTTCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: CPHSLSPSLLLGSLILRKVSCVR*AVCFSS Trigger: GCTGCTGAAGCATACGGCCAACCTCACACAGCTGAC...CTTTCTGAGTATGAGGGACCCTAGAAGTAGGGAAGGGGATAAAGAGTGAGGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS TCA 90 bp | TGGCTCAGCCCAGGCAGAAGGTCACGGATTTGGAAGTCCGTGAGGTaGAAGCACTCCAATTTTAATGTCTGCAGAGTAGCTGTCAGTCTT | + |
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Preference number: 5 (lower is better) Translates to: WLSPGRRSRIWKSVR*KHSNFNVCRVAVSL Trigger: AAGACTGACAGCTACTCTGCAGACATTAAAATTGGAGTGCTTTCACCTCACGGACTTCCAAATCCGTGACCTTCTGCCTGGGCTGAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | TTATCCCCTTCCCTACTTCTAGGGTCCCTCATACTCAGAAAGTGCTGGAATGAATCAGCAGGCTTCTTCTaGCCAGCTGCTGGAGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LSPSLLLGSLILRKCWNESAGFF*PAAGVL Trigger: CAACACTCCAGCAGCTGGCAAGAAGAAGCCTGCTGA...TTCATTCCAGCACTTTCTGAGTATGAGGGACCCTAGAAGTAGGGAAGGGGATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS TCA 90 bp | GGACACTGGGACAGATACCTCATGTCTAATTCTGAAAGCCTGCAATaGGTGATAGCAAGGGTCTCTAATGGACGCTCAAAGCACCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: GHWDRYLMSNSESLQ*VIARVSNGRSKHLS Trigger: GCTCAGGTGCTTTGAGCGTCCATTAGAGACCCTTGCTATCACTCATTGCAGGCTTTCAGAATTAGACATGAGGTATCTGTCCCAGTGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CCA 90 bp | ACCTTATGCAGTTTGGAGAACTCAGAAAAGATCTCTGTAACAATATaGGCTTCCTGTAGGTCTGCAAGGTCAGGAGGTCTCCTGATGTTC | + |
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Preference number: 5 (lower is better) Translates to: TLCSLENSEKISVTI*ASCRSARSGGLLMF Trigger: GAACATCAGGAGACCTCCTGACCTTGCAGACCTACAGGAAGCCCATATTGTTACAGAGATCTTTTCTGAGTTCTCCAAACTGCATAAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | CTCAGAAAGTGCTGGAATGAACCCCTACAATTTTCAGATATAATTGCTGTTCAATCAGCAGGCTTCTTCTaGCCAGCTGCTGGAGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LRKCWNEPLQFSDIIAVQSAGFF*PAAGVL Trigger: CAACACTCCAGCAGCTGGCAAGAAGAAGCCTGCTGA...TTGAACAGCAATTATATCTGAAAATTGTAGGGGTTCATTCCAGCACTTTCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | CAGCTTAATAGTGATAACAGTCTAATACAAAAATACTCCAAGGTTCAGTCAGACGTCAGCTGTGTGAGGTaGGCCGTATGCTTCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: QLNSDNSLIQKYSKVQSDVSCVR*AVCFSS Trigger: GCTGCTGAAGCATACGGCCAACCTCACACAGCTGAC...GTCTGACTGAACCTTGGAGTATTTTTGTATTAGACTGTTATCACTATTAAGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS GCA 90 bp | GAGTTTCTGGAGGTTTTTCATCTGGCCCAGGCAAGAGGCTATCAATaGAAGGTTATATATATCCCAGTGTATGGACTTTATTGCCAATTC | + |
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Preference number: 5 (lower is better) Translates to: EFLEVFHLAQARGYQ*KVIYIPVYGLYCQF Trigger: GAATTGGCAATAAAGTCCATACACTGGGATATATATAACCTTGCATTGATAGCCTCTTGCCTGGGCCAGATGAAAAACCTCCAGAAACTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | ATAGCAGGCTACTGGACCTCCCCAAGAAAGAGATACAGCTTAATAGTGATAACAAGTGTATGGACTTTATaGCCAATTCCTGGATTGAGG | + |
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Preference number: 5 (lower is better) Translates to: IAGYWTSPRKRYSLIVITSVWTL*PIPGLR Trigger: CCTCAATCCAGGAATTGGCAATAAAGTCCATACACT...TGTTATCACTATTAAGCTGTATCTCTTTCTTGGGGAGGTCCAGTAGCCTGCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | GAACCCCTACAATTTTCAGATATAATTGCTGTTCAAGGGTTTGTCTGTACTGTAGCCTGCCTTACACCCTaGAGTGTGTTCATAAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: EPLQFSDIIAVQGFVCTVACLTP*SVFISS Trigger: TGAGCTTATGAACACACTCAAGGGTGTAAGGCAGGC...TACAGTACAGACAAACCCTTGAACAGCAATTATATCTGAAAATTGTAGGGGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | GGGAGAATGAAACAGAGACCTCCTATTCAAGTCCATTATGATCTTTATAATGTCGCCTGCCTTACACCCTaGAGTGTGTTCATAAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: GRMKQRPPIQVHYDLYNVACLTP*SVFISS Trigger: TGAGCTTATGAACACACTCAAGGGTGTAAGGCAGGC...GACATTATAAAGATCATAATGGACTTGAATAGGAGGTCTCTGTTTCATTCTCCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | CCTATTCAAGTCCATTATGATCTTTATAATGTCCTCACTCTTTATCCCCTTCCCCTTGCCAAAGACATCTaGAGAGCAGACTTCATGAAG | + |
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Preference number: 5 (lower is better) Translates to: PIQVHYDLYNVLTLYPLPLAKDI*RADFMK Trigger: CTTCATGAAGTCTGCTCTCAAGATGTCTTTGGCAAG...GGGAAGGGGATAAAGAGTGAGGACATTATAAAGATCATAATGGACTTGAATAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | ATAGCAGGCTACTGGACCTCCCCAAGAAAGAGATACAGCTTAATAGTGATAACATTGCCAATTCCTGGATaGAGGCTACAAAAGAAAACT | + |
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Preference number: 5 (lower is better) Translates to: IAGYWTSPRKRYSLIVITLPIPG*RLQKKT Trigger: AGTTTTCTTTTGTAGCCTCAATCCAGGAATTGGCAA...TGTTATCACTATTAAGCTGTATCTCTTTCTTGGGGAGGTCCAGTAGCCTGCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CCA 90 bp | CCAGGCAAGAGGCTATCAATGCAAGGTTATATATATCCCAGTGTATaGACTTTATTGCCAATTCCTGGATTGAGGCTACAAAAGAAAACT | + |
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Preference number: 5 (lower is better) Translates to: PGKRLSMQGYIYPSV*TLLPIPGLRLQKKT Trigger: AGTTTTCTTTTGTAGCCTCAATCCAGGAATTGGCAATAAAGTCCATACACTGGGATATATATAACCTTGCATTGATAGCCTCTTGCCTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | GGGAGAATGAAACAGAGACCTCCTATTCAAGTCCATTATGATCTTTATAATGTCCTTGCCAAAGACATCTaGAGAGCAGACTTCATGAAG | + |
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Preference number: 5 (lower is better) Translates to: GRMKQRPPIQVHYDLYNVLAKDI*RADFMK Trigger: CTTCATGAAGTCTGCTCTCAAGATGTCTTTGGCAAG...GACATTATAAAGATCATAATGGACTTGAATAGGAGGTCTCTGTTTCATTCTCCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | CTCAGAAAGTGCTGGAATGAACCCCTACAATTTTCAGATATAATTGCTGTTCAATTGCCAATTCCTGGATaGAGGCTACAAAAGAAAACT | + |
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Preference number: 5 (lower is better) Translates to: LRKCWNEPLQFSDIIAVQLPIPG*RLQKKT Trigger: AGTTTTCTTTTGTAGCCTCAATCCAGGAATTGGCAA...TTGAACAGCAATTATATCTGAAAATTGTAGGGGTTCATTCCAGCACTTTCTGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS-3UTR CAA 90 bp | CAGCTTAATAGTGATAACAGTCTAATACAAAAATACTCCAAGGTTCAGTCAGACAGTGTATGGACTTTATaGCCAATTCCTGGATTGAGG | + |
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Preference number: 5 (lower is better) Translates to: QLNSDNSLIQKYSKVQSDSVWTL*PIPGLR Trigger: CCTCAATCCAGGAATTGGCAATAAAGTCCATACACT...GTCTGACTGAACCTTGGAGTATTTTTGTATTAGACTGTTATCACTATTAAGCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS TCA 72 bp | CAACAGGGGCAGGGTACTTCTCCAGGGTCAGCTGTGTaGGGTTGGCCGTATGCTTCAGCAGCTTCTTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: QQGQGTSPGSAV*GWPYASAASSG Trigger: GCCTGAAGAAGCTGCTGAAGCATACGGCCAACCTCACACAGCTGACCCTGGAGAAGTACCCTGCCCCTGTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CAA 72 bp | GGGCCATGCTGCCACCATCAGGCTCAGGATCTTACGTaGTCTGCTGGTGAATGCATCCTTGAAGAGTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: GPCCHHQAQDLT*SAGECILEEWW Trigger: CCACCACTCTTCAAGGATGCATTCACCAGCAGACAACGTAAGATCCTGAGCCTGATGGTGGCAGCATGGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS TCA 72 bp | TCAAGGCCATCTAGTACAGCTTTCAGGGTCTCCAGGTaGTCAATCCCACCCAGAGCTCCCACAGGAAGGACT | + |
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Preference number: 6 (lower is better) Translates to: SRPSSTAFRVSR*SIPPRAPTGRT Trigger: AGTCCTTCCTGTGGGAGCTCTGGGTGGGATTGATCACCTGGAGACCCTGAAAGCTGTACTAGATGGCCTTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CAA 72 bp | GCTGGTGAATGCATCCTTGAAGAGTGGTGGGAAGAGTaGCACAGGCAGGTTCAGCAGAGCAGAGATGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: AGECILEEWWEE*HRQVQQSRDGQ Trigger: TTGACCATCTCTGCTCTGCTGAACCTGCCTGTGCAACTCTTCCCACCACTCTTCAAGGATGCATTCACCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CAA 90 bp | ACGTTGTCTGCTGGTGAATGCATCCTTGAAGAGTGGTGGGAAGAGTaGCACAGGCAGGTTCAGCAGAGCAGAGATGGTCAAGGCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: TLSAGECILEEWWEE*HRQVQQSRDGQGFI Trigger: GATGAAGCCTTGACCATCTCTGCTCTGCTGAACCTGCCTGTGCAACTCTTCCCACCACTCTTCAAGGATGCATTCACCAGCAGACAACGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CAA 90 bp | ACCATCAGGCTCAGGATCTTACGTTGTCTGCTGGTGAATGCATCCTaGAAGAGTGGTGGGAAGAGTTGCACAGGCAGGTTCAGCAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: TIRLRILRCLLVNAS*KSGGKSCTGRFSRA Trigger: TGCTCTGCTGAACCTGCCTGTGCAACTCTTCCCACCACTCTTCAAGGATGCATTCACCAGCAGACAACGTAAGATCCTGAGCCTGATGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS GCA 72 bp | CATCAGGCTCAGGATCTTACGTTGTCTGCTGGTGAATaGATCCTTGAAGAGTGGTGGGAAGAGTTGCACAGG | + |
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Preference number: 6 (lower is better) Translates to: HQAQDLTLSAGE*ILEEWWEELHR Trigger: CCTGTGCAACTCTTCCCACCACTCTTCAAGGATGCATTCACCAGCAGACAACGTAAGATCCTGAGCCTGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CCA 72 bp | GGAAGAGTTGCACAGGCAGGTTCAGCAGAGCAGAGATaGTCAAGGCTTCATCTTTCAGCAGGCTTCTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: GRVAQAGSAEQR*SRLHLSAGFFL Trigger: CAAGAAGAAGCCTGCTGAAAGATGAAGCCTTGACCATCTCTGCTCTGCTGAACCTGCCTGTGCAACTCTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS TCA 72 bp | TCAGCCCAGGCAGAAGGTCACGGATTTGGAAGTCCGTaGGGTGAAAGCACTCCAATTTTAATGTCTGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SAQAEGHGFGSP*GESTPILMSAE Trigger: CTCTGCAGACATTAAAATTGGAGTGCTTTCACCTCACGGACTTCCAAATCCGTGACCTTCTGCCTGGGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CCA 72 bp | GAAAATTCATTCATCGCAATATCAACTTCAGTGAGCTaGGAACACTGGCTCAGCCCAGGCAGAAGGTCACGG | + |
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Preference number: 6 (lower is better) Translates to: ENSFIAISTSVS*EHWLSPGRRSR Trigger: CCGTGACCTTCTGCCTGGGCTGAGCCAGTGTTCCCAGCTCACTGAAGTTGATATTGCGATGAATGAATTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS GCA 72 bp | CCCCTGGGATGGGATGATTTCCCACTGGTTGGTTCTTaGCAAAGACATCTTGAGAGCAGACTTCATGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: PLGWDDFPLVGS*QRHLESRLHEV Trigger: TACTTCATGAAGTCTGCTCTCAAGATGTCTTTGGCAAGAACCAACCAGTGGGAAATCATCCCATCCCAGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CCA 72 bp | AGTTTGGAGAACTCAGAAAAGATCTCTGTAACAATATaGGCTTCCTGTAGGTCTGCAAGGTCAGGAGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SLENSEKISVTI*ASCRSARSGGL Trigger: GAGACCTCCTGACCTTGCAGACCTACAGGAAGCCCATATTGTTACAGAGATCTTTTCTGAGTTCTCCAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS TCA 72 bp | GACAGATACCTCATGTCTAATTCTGAAAGCCTGCAATaGGTGATAGCAAGGGTCTCTAATGGACGCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: DRYLMSNSESLQ*VIARVSNGRSK Trigger: CTTTGAGCGTCCATTAGAGACCCTTGCTATCACTCATTGCAGGCTTTCAGAATTAGACATGAGGTATCTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CAA 90 bp | GGTTATATATATCCCAGTGTATGGACTTTATTGCCAATTCCTGGATaGAGGCTACAAAAGAAAACTTCAAGAACCTCAGTTCGGGACAGT | + |
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Preference number: 6 (lower is better) Translates to: GYIYPSVWTLLPIPG*RLQKKTSRTSVRDS Trigger: ACTGTCCCGAACTGAGGTTCTTGAAGTTTTCTTTTGTAGCCTCAATCCAGGAATTGGCAATAAAGTCCATACACTGGGATATATATAACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CAA 72 bp | TATCCCAGTGTATGGACTTTATTGCCAATTCCTGGATaGAGGCTACAAAAGAAAACTTCAAGAACCTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: YPSVWTLLPIPG*RLQKKTSRTSV Trigger: AACTGAGGTTCTTGAAGTTTTCTTTTGTAGCCTCAATCCAGGAATTGGCAATAAAGTCCATACACTGGGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CCA 72 bp | TATATATCCCAGTGTATGGACTTTATTGCCAATTCCTaGATTGAGGCTACAAAAGAAAACTTCAAGAACCTC | + |
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Preference number: 6 (lower is better) Translates to: YISQCMDFIANS*IEATKENFKNL Trigger: GAGGTTCTTGAAGTTTTCTTTTGTAGCCTCAATCCAGGAATTGGCAATAAAGTCCATACACTGGGATATATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS TCA 72 bp | GTTCATAAGCTCAGAACAAAGTTGTACAAATCTGTCTaGAATAACACTATGACCGTCATCATAGACTTCAAC | + |
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Preference number: 6 (lower is better) Translates to: VHKLRTKLYKSV*NNTMTVIIDFN Trigger: GTTGAAGTCTATGATGACGGTCATAGTGTTATTTCAGACAGATTTGTACAACTTTGTTCTGAGCTTATGAAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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| CDS CAA 72 bp | ATGCAAGGTTATATATATCCCAGTGTATGGACTTTATaGCCAATTCCTGGATTGAGGCTACAAAAGAAAACT | + |
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Preference number: 6 (lower is better) Translates to: MQGYIYPSVWTL*PIPGLRLQKKT Trigger: AGTTTTCTTTTGTAGCCTCAATCCAGGAATTGGCAATAAAGTCCATACACTGGGATATATATAACCTTGCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035757.13 ENSMUST00000105752.4 |
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