Pregenerated sensors for PRAMEL49 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094043

Ensembl transcript IDs: ENSMUST00000086950.6

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CAA 90 bp	ACATCCAAGTTGCCTTTGCCAGTCCACAAGTCTGCTCCCCATGTCAAGCTTAGCCCAAAATCCCAATTATaGTACATCCTTTCCTTTCCA	+
Preference number: 3 (lower is better) Translates to: TSKLPLPVHKSAPHVKLSPKSQL*YILSFP Trigger: TGGAAAGGAAAGGATGTACAATAATTGGGATTTTGG...GCTAAGCTTGACATGGGGAGCAGACTTGTGGACTGGCAAAGGCAACTTGGATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS GCA 90 bp	CAAAGCCCCCACAGGGAGACAGGGAAAAGTCCAGGCTGCCACGATTaGCTTCATGAGCTTCTTAAGTCTGCCAGCAAAGGCCTCCTTGAA	+
Preference number: 5 (lower is better) Translates to: QSPHRETGKSPGCHD*LHELLKSASKGLLE Trigger: TTCAAGGAGGCCTTTGCTGGCAGACTTAAGAAGCTCATGAAGGCAATCGTGGCAGCCTGGACTTTTCCCTGTCTCCCTGTGGGGGCTTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS CCA 90 bp	CATGAGCTTCTTAAGTCTGCCAGCAAAGGCCTCCTTGAACAGAGCTaGGAAGAGCAGAAAAGGCACCTCCTCCAGACAGGACAAGGCCAA	+
Preference number: 5 (lower is better) Translates to: HELLKSASKGLLEQS*EEQKRHLLQTGQGQ Trigger: TTGGCCTTGTCCTGTCTGGAGGAGGTGCCTTTTCTGCTCTTCCCAGCTCTGTTCAAGGAGGCCTTTGCTGGCAGACTTAAGAAGCTCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS GCA 90 bp	GGGGCAGGGTACTGTTCCACATTCATCTTGTTCCAGTTGGCTGTTTaGTGTAAAAGGTCCTTCAGGATGGGCATGGAGAAGTCATTGTTG	+
Preference number: 5 (lower is better) Translates to: GAGYCSTFILFQLAV*CKRSFRMGMEKSLL Trigger: CAACAATGACTTCTCCATGCCCATCCTGAAGGACCTTTTACAGCAAACAGCCAACTGGAACAAGATGAATGTGGAACAGTACCCTGCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS GCA 90 bp	CTAAGAGACCTCTCAGAGGCATCACATCCAAAACCTGTAAGACCATaGCTTTCATCTCCAGATGTTTTAGCTGAAAGAGACTCTGACAGC	+
Preference number: 5 (lower is better) Translates to: LRDLSEASHPKPVRP*LSSPDVLAERDSDS Trigger: GCTGTCAGAGTCTCTTTCAGCTAAAACATCTGGAGATGAAAGGCATGGTCTTACAGGTTTTGGATGTGATGCCTCTGAGAGGTCTCTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS GCA 72 bp	CGGGGCCTGAGGCACAGGTCTGCTACCACCTTCAGCTaGTTCCTCCGTGCATATCTGCGAAGGACCTTCACT	+
Preference number: 6 (lower is better) Translates to: RGLRHRSATTFS*FLRAYLRRTFT Trigger: AGTGAAGGTCCTTCGCAGATATGCACGGAGGAAGCAGCTGAAGGTGGTAGCAGACCTGTGCCTCAGGCCCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS GCA 72 bp	CAAAGCCCCCACAGGGAGACAGGGAAAAGTCCAGGCTaGCACGATTGCCTTCATGAGCTTCTTAAGTCTGCC	+
Preference number: 6 (lower is better) Translates to: QSPHRETGKSPG*HDCLHELLKSA Trigger: GGCAGACTTAAGAAGCTCATGAAGGCAATCGTGGCAGCCTGGACTTTTCCCTGTCTCCCTGTGGGGGCTTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS GCA 72 bp	CACAGGGAGACAGGGAAAAGTCCAGGCTGCCACGATTaGCTTCATGAGCTTCTTAAGTCTGCCAGCAAAGGC	+
Preference number: 6 (lower is better) Translates to: HRETGKSPGCHD*LHELLKSASKG Trigger: GCCTTTGCTGGCAGACTTAAGAAGCTCATGAAGGCAATCGTGGCAGCCTGGACTTTTCCCTGTCTCCCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS TCA 72 bp	GACCTTCACTACTGTAGGCTTCTCATTCAAGGACTCTaGAGAACAGCTACCATCCTCTGCACCAGCCCATAT	+
Preference number: 6 (lower is better) Translates to: DLHYCRLLIQGL*RTATILCTSPY Trigger: ATATGGGCTGGTGCAGAGGATGGTAGCTGTTCTTCAGAGTCCTTGAATGAGAAGCCTACAGTAGTGAAGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS TCA 72 bp	AGGAATCCAAGTCTGACTGTGAAATTTGGTAGTGAGTaGTGGAGAGGGACTCCAAGGGTGTCATCAAGCACC	+
Preference number: 6 (lower is better) Translates to: RNPSLTVKFGSE*WRGTPRVSSST Trigger: GGTGCTTGATGACACCCTTGGAGTCCCTCTCCATCACTCACTACCAAATTTCACAGTCAGACTTGGATTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS GCA 72 bp	CCTATTGGCAATCTTGAAGACATTCTTATAGAGGGGTaGCAGGAGAAGTTTGCGAAGATTTCTCATCTGCCC	+
Preference number: 6 (lower is better) Translates to: PIGNLEDILIEG*QEKFAKISHLP Trigger: GGGCAGATGAGAAATCTTCGCAAACTTCTCCTGGCACCCCTCTATAAGAATGTCTTCAAGATTGCCAATAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS GCA 72 bp	TACTGTTCCACATTCATCTTGTTCCAGTTGGCTGTTTaGTGTAAAAGGTCCTTCAGGATGGGCATGGAGAAG	+
Preference number: 6 (lower is better) Translates to: YCSTFILFQLAV*CKRSFRMGMEK Trigger: CTTCTCCATGCCCATCCTGAAGGACCTTTTACAGCAAACAGCCAACTGGAACAAGATGAATGTGGAACAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS GCA 72 bp	ATGTTTATACAGCACAAATGTAGGGAGTCCTTTCTCTaGTGGGCCCACTTCAAGAAGTATGCTTGTGCTTCA	+
Preference number: 6 (lower is better) Translates to: MFIQHKCRESFL*WAHFKKYACAS Trigger: TGAAGCACAAGCATACTTCTTGAAGTGGGCCCAGCAGAGAAAGGACTCCCTACATTTGTGCTGTATAAACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS GCA 72 bp	TGGTCTGTGAGAAAGTGGACACCTTGCATGGAGAGATaGTGGAGACAATTGAATTTGGAGAAGATAGAAACG	+
Preference number: 6 (lower is better) Translates to: WSVRKWTPCMER*WRQLNLEKIET Trigger: CGTTTCTATCTTCTCCAAATTCAATTGTCTCCAGCATCTCTCCATGCAAGGTGTCCACTTTCTCACAGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086950.6
CDS TCA 72 bp	ACTTATCTTCTCTGTCTCCTGTCCTATTGGCAATCTTaGAGACATTCTTATAGAGGGGTGCCAGGAGAAGTT	+
Preference number: 6 (lower is better) Translates to: TYLLCLLSYWQS*RHSYRGVPGEV Trigger: AACTTCTCCTGGCACCCCTCTATAAGAATGTCTTCAAGATTGCCAATAGGACAGGAGACAGAGAAGATAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086950.6