Pregenerated sensors for PRAMEL46 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096066

Ensembl transcript IDs: ENSMUST00000180232.2, ENSMUST00000201031.4

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CCAATTATTGTACATCCTTTCCTTTCCAAGTATCTGTACATTGCCTaGAGTCAGTCTCTGAGCACCCCAGATGAGAGATGTGTCTCAAGA	+
Preference number: 1 (lower is better) Translates to: PIIVHPFLSKYLYIA*SQSLSTPDERCVSR Trigger: TCTTGAGACACATCTCTCATCTGGGGTGCTCAGAGACTGACTTCAGGCAATGTACAGATACTTGGAAAGGAAAGGATGTACAATAATTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201031.4
3UTR CAA 72 bp	TCCCAGCAGAGTCCACTCAAAACATCCAAGTTGCCTTaGCCAGTCCACAAGTCTGCTCCCCATGTCAAGCTT	+
Preference number: 4 (lower is better) Translates to: SQQSPLKTSKLP*PVHKSAPHVKL Trigger: AAGCTTGACATGGGGAGCAGACTTGTGGACTGGCAAAGGCAACTTGGATGTTTTGAGTGGACTCTGCTGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201031.4
3UTR CAA 72 bp	AATCTGTCCCAGCAGAGTCCACTCAAAACATCCAAGTaGCCTTTGCCAGTCCACAAGTCTGCTCCCCATGTC	+
Preference number: 4 (lower is better) Translates to: NLSQQSPLKTSK*PLPVHKSAPHV Trigger: GACATGGGGAGCAGACTTGTGGACTGGCAAAGGCAACTTGGATGTTTTGAGTGGACTCTGCTGGGACAGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201031.4
CDS GCA 90 bp	GAAGTATGCTTGTGTTTCATCACGGCGGGGCCTGAGGCACAGGTCTaGTACCACCTTCAGCTGCTTCCTCTGTGCATATCTGCGAAGGAC	+
Preference number: 5 (lower is better) Translates to: EVCLCFITAGPEAQV*YHLQLLPLCISAKD Trigger: GTCCTTCGCAGATATGCACAGAGGAAGCAGCTGAAGGTGGTAGCAGACCTGTGCCTCAGGCCCCGCCGTGATGAAACACAAGCATACTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000180232.2 ENSMUST00000201031.4
CDS GCA 72 bp	CGGGGCCTGAGGCACAGGTCTGCTACCACCTTCAGCTaGTTCCTCTGTGCATATCTGCGAAGGACCTTCACT	+
Preference number: 6 (lower is better) Translates to: RGLRHRSATTFS*FLCAYLRRTFT Trigger: AGTGAAGGTCCTTCGCAGATATGCACAGAGGAAGCAGCTGAAGGTGGTAGCAGACCTGTGCCTCAGGCCCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000180232.2 ENSMUST00000201031.4
CDS GCA 72 bp	GGAGTCCTTTCTCTGCTGGGCCCACTTCAAGAAGTATaGTTGTGTTTCATCACGGCGGGGCCTGAGGCACAG	+
Preference number: 6 (lower is better) Translates to: GVLSLLGPLQEV*LCFITAGPEAQ Trigger: CTGTGCCTCAGGCCCCGCCGTGATGAAACACAAGCATACTTCTTGAAGTGGGCCCAGCAGAGAAAGGACTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000180232.2 ENSMUST00000201031.4
CDS GCA 72 bp	TTGTGTTTCATCACGGCGGGGCCTGAGGCACAGGTCTaGTACCACCTTCAGCTGCTTCCTCTGTGCATATCT	+
Preference number: 6 (lower is better) Translates to: LCFITAGPEAQV*YHLQLLPLCIS Trigger: AGATATGCACAGAGGAAGCAGCTGAAGGTGGTAGCAGACCTGTGCCTCAGGCCCCGCCGTGATGAAACACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000180232.2 ENSMUST00000201031.4
CDS GCA 72 bp	CAAGGCCAAAGCCTCATCTCTCAGCAGAGCCTGCAATaGCAGATTCTGGAGAGTGGACGGAGTCTGAACAGT	+
Preference number: 6 (lower is better) Translates to: QGQSLISQQSLQ*QILESGRSLNS Trigger: ACTGTTCAGACTCCGTCCACTCTCCAGAATCTGGCATTGCAGGCTCTGCTGAGAGATGAGGCTTTGGCCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180232.2 ENSMUST00000201031.4
CDS GCA 72 bp	GCACAGGTCTGCTACCACCTTCAGCTGCTTCCTCTGTaGATATCTGCGAAGGACCTTCACTACTGTAGGCTT	+
Preference number: 6 (lower is better) Translates to: AQVCYHLQLLPL*ISAKDLHYCRL Trigger: AAGCCTACAGTAGTGAAGGTCCTTCGCAGATATGCACAGAGGAAGCAGCTGAAGGTGGTAGCAGACCTGTGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180232.2 ENSMUST00000201031.4
CDS CAA 72 bp	TTCATGAGCTTCTTAAGTCTGCCAGCAAAGGCCTCCTaGAACAGAGCTGGGAAGAGCAGAAAAGGCACCTCC	+
Preference number: 6 (lower is better) Translates to: FMSFLSLPAKAS*NRAGKSRKGTS Trigger: GGAGGTGCCTTTTCTGCTCTTCCCAGCTCTGTTCAAGGAGGCCTTTGCTGGCAGACTTAAGAAGCTCATGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000180232.2 ENSMUST00000201031.4
CDS CAA 72 bp	GGGGCAGGGTACTGTTCCACATTCATCTTGTTCCAGTaGGCTGTTTGCTGTAAAAGGTCCTTCAGGATGGGC	+
Preference number: 6 (lower is better) Translates to: GAGYCSTFILFQ*AVCCKRSFRMG Trigger: GCCCATCCTGAAGGACCTTTTACAGCAAACAGCCAACTGGAACAAGATGAATGTGGAACAGTACCCTGCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201031.4
CDS CAA 72 bp	CACTCCAGAGGGGCAGGGTACTGTTCCACATTCATCTaGTTCCAGTTGGCTGTTTGCTGTAAAAGGTCCTTC	+
Preference number: 6 (lower is better) Translates to: HSRGAGYCSTFI*FQLAVCCKRSF Trigger: GAAGGACCTTTTACAGCAAACAGCCAACTGGAACAAGATGAATGTGGAACAGTACCCTGCCCCTCTGGAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201031.4
CDS CAA 72 bp	GACCTGACTCATGTGGTCTGTGAGAAAGTGGACACCTaGCATGGAGAGATGCTGGAGACAATTGAATTTGGA	+
Preference number: 6 (lower is better) Translates to: DLTHVVCEKVDT*HGEMLETIEFG Trigger: TCCAAATTCAATTGTCTCCAGCATCTCTCCATGCAAGGTGTCCACTTTCTCACAGACCACATGAGTCAGGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180232.2 ENSMUST00000201031.4
CDS CAA 72 bp	ACACCTTGCATGGAGAGATGCTGGAGACAATTGAATTaGGAGAAGATAGAAACGAACTCCTTGACACACTTA	+
Preference number: 6 (lower is better) Translates to: TPCMERCWRQLN*EKIETNSLTHL Trigger: TAAGTGTGTCAAGGAGTTCGTTTCTATCTTCTCCAAATTCAATTGTCTCCAGCATCTCTCCATGCAAGGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180232.2 ENSMUST00000201031.4
CDS CAA 72 bp	AGACAATTGAATTTGGAGAAGATAGAAACGAACTCCTaGACACACTTATCTTCTCTGTCTCCTGTCCTATTG	+
Preference number: 6 (lower is better) Translates to: RQLNLEKIETNS*THLSSLSPVLL Trigger: CAATAGGACAGGAGACAGAGAAGATAAGTGTGTCAAGGAGTTCGTTTCTATCTTCTCCAAATTCAATTGTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180232.2 ENSMUST00000201031.4

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