Pregenerated sensors for PRAMEL45 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000092166Ensembl transcript IDs: ENSMUST00000163216.2, ENSMUST00000238343.2, ENSMUST00000238517.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTGGTCAAAGACCCAGCGCTCCCCACATGTGTGGCAGATATCTGTAGCAAAGGACAGGTAGGAGAACATTaGGCTGGGAGTCTTTCATCC | + |
|
Preference number: 2 (lower is better) Translates to: LVKDPALPTCVADICSKGQVGEH*AGSLSS Trigger: GGATGAAAGACTCCCAGCTCAATGTTCTCCTACCTG...TCCTTTGCTACAGATATCTGCCACACATGTGGGGAGCGCTGGGTCTTTGACCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR-3UTR GCA 90 bp | ACTACAAAGTTTAGCCACCTGGTCAAAGACCCAGCGCTCCCCACATGTGTGGCACTTGGGCTGCCTTATTaGCCTCAGTGTATCCATGAG | + |
|
Preference number: 2 (lower is better) Translates to: TTKFSHLVKDPALPTCVALGLPY*PQCIHE Trigger: CTCATGGATACACTGAGGGCAATAAGGCAGCCCAAG...TGCCACACATGTGGGGAGCGCTGGGTCTTTGACCAGGTGGCTAAACTTTGTAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR-3UTR CCA 90 bp | TTAGCCACCTGGTCAAAGACCCAGCGCTCCCCACATGTGTGGCAGATATCTGTATCATCTTGCTCCAGTTaGCTGTGTGCTGCAAAAGGT | + |
|
Preference number: 2 (lower is better) Translates to: LATWSKTQRSPHVWQISVSSCSS*LCAAKG Trigger: ACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGA...TACAGATATCTGCCACACATGTGGGGAGCGCTGGGTCTTTGACCAGGTGGCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR-3UTR GCA 90 bp | TGGCAGATATCTGTAGCAAAGGAGCTGTTCTTGGGCTGCCTTATTGCCCTCAGTCAGTTGGCTGTGTGCTaGAAAAGGTCCTTCAGGAAG | + |
|
Preference number: 2 (lower is better) Translates to: WQISVAKELFLGCLIALSQLAVC*KRSFRK Trigger: CTTCCTGAAGGACCTTTTGCAGCACACAGCCAACTG...ACTGAGGGCAATAAGGCAGCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR-3UTR GCA 90 bp | TCCCCACATGTGTGGCAGATATCTGTAGCAAAGGAGCTGTTCTTGGGCTGCCTTGTTCCACATTCATCTTaGTCCAGTTGGCTGTGTGCT | + |
|
Preference number: 2 (lower is better) Translates to: SPHVWQISVAKELFLGCLVPHSS*SSWLCA Trigger: AGCACACAGCCAACTGGAGCAAGATGAATGTGGAAC...AAGGCAGCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCACACATGTGGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR-3UTR TCA 90 bp | CCACATGTGTGGCAGATATCTGTAGCAAAGGAGCTGTTCTTGGGCTGCCTTATTCCCTCAGTGTATCCATaGGATCCTGACAAAGTTGGG | + |
|
Preference number: 2 (lower is better) Translates to: PHVWQISVAKELFLGCLIPSVYP*DPDKVG Trigger: CCCAACTTTGTCAGGATCTCATGGATACACTGAGGG...AATAAGGCAGCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCACACATGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR-3UTR TCA 90 bp | CAAAGTTTAGCCACCTGGTCAAAGACCCAGCGCTCCCCACATGTGTGGCAGATATCTGAGAGCATTGTTTaGATACAGGTAGGAGAACAT | + |
|
Preference number: 2 (lower is better) Translates to: QSLATWSKTQRSPHVWQISESIV*IQVGEH Trigger: ATGTTCTCCTACCTGTATTCAAACAATGCTCTCAGA...TATCTGCCACACATGTGGGGAGCGCTGGGTCTTTGACCAGGTGGCTAAACTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR-3UTR TCA 90 bp | CCAGCAACTACAAAGTTTAGCCACCTGGTCAAAGACCCAGCGCTCCCCACATGTCATTGTTGTAGAAGTTaGTATTGGAGATCTGAGAGC | + |
|
Preference number: 2 (lower is better) Translates to: PATTKFSHLVKDPALPTCHCCRS*YWRSES Trigger: GCTCTCAGATCTCCAATATCAACTTCTACAACAATG...ACATGTGGGGAGCGCTGGGTCTTTGACCAGGTGGCTAAACTTTGTAGTTGCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR-3UTR TCA 90 bp | CCACATGTGTGGCAGATATCTGTAGCAAAGGAGCTGTTCTTGGGCTGCCTTATTGTATCCATGAGATCCTaGCAAAGTTGGGCAAATCCT | + |
|
Preference number: 2 (lower is better) Translates to: PHVWQISVAKELFLGCLIVSMRS*QSWANP Trigger: AGGATTTGCCCAACTTTGTCAGGATCTCATGGATAC...AATAAGGCAGCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCACACATGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR CAA 90 bp | ATCCATGAGATCCTGACAAAGTTGGGCAAATCCTTCTACAGTGACTaGAGCAAATTCATCATAGCACTCCAGAGGGGCAGGATATTGTTC | + |
|
Preference number: 2 (lower is better) Translates to: IHEILTKLGKSFYSD*SKFIIALQRGRILF Trigger: GAACAATATCCTGCCCCTCTGGAGTGCTATGATGAATTTGCTCAAGTCACTGTAGAAGGATTTGCCCAACTTTGTCAGGATCTCATGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR CCA 72 bp | GCCACCTGGTCAAAGACCCAGCGCTCCCCACATGTGTaGCAGATATCTGTAGCAAAGGAGCTGTTCTTGGGC | + |
|
Preference number: 3 (lower is better) Translates to: ATWSKTQRSPHV*QISVAKELFLG Trigger: GCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCACACATGTGGGGAGCGCTGGGTCTTTGACCAGGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR-3UTR CAA 90 bp | CAACTACAAAGTTTAGCCACCTGGTCAAAGACCCAGCGCTCCCCACATGTGTGGACAGGTAGGAGAACATaGAGCTGGGAGTCTTTCATC | + |
|
Preference number: 3 (lower is better) Translates to: QLQSLATWSKTQRSPHVWTGRRT*SWESFI Trigger: GATGAAAGACTCCCAGCTCAATGTTCTCCTACCTGT...CCACACATGTGGGGAGCGCTGGGTCTTTGACCAGGTGGCTAAACTTTGTAGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR-3UTR CAA 90 bp | TCCCCACATGTGTGGCAGATATCTGTAGCAAAGGAGCTGTTCTTGGGCTGCCTTTGTTCCACATTCATCTaGCTCCAGTTGGCTGTGTGC | + |
|
Preference number: 3 (lower is better) Translates to: SPHVWQISVAKELFLGCLCSTFI*LQLAVC Trigger: GCACACAGCCAACTGGAGCAAGATGAATGTGGAACA...AAGGCAGCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCACACATGTGGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR GCA 72 bp | TGTTCCACATTCATCTTGCTCCAGTTGGCTGTGTGCTaGAAAAGGTCCTTCAGGAAGGGCATGGAGAATTCA | + |
|
Preference number: 3 (lower is better) Translates to: CSTFILLQLAVC*KRSFRKGMENS Trigger: TGAATTCTCCATGCCCTTCCTGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR GCA 72 bp | TATTGTTCCACATTCATCTTGCTCCAGTTGGCTGTGTaGTGCAAAAGGTCCTTCAGGAAGGGCATGGAGAAT | + |
|
Preference number: 3 (lower is better) Translates to: YCSTFILLQLAV*CKRSFRKGMEN Trigger: ATTCTCCATGCCCTTCCTGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR CCA 72 bp | GAGCATTGTTTGAATACAGGTAGGAGAACATTGAGCTaGGAGTCTTTCATCCTACACCCCTGCAAATCCAGA | + |
|
Preference number: 3 (lower is better) Translates to: EHCLNTGRRTLS*ESFILHPCKSR Trigger: TCTGGATTTGCAGGGGTGTAGGATGAAAGACTCCCAGCTCAATGTTCTCCTACCTGTATTCAAACAATGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| CDS-3UTR GCA 90 bp | CGCTCCCCACATGTGTGGCAGATATCTGTAGCAAAGGAGCTGTTCTTGGGCTGCGGCCTCCTTGAAAAGTaGTGGGAAGAGTCCATGGGC | + |
|
Preference number: 4 (lower is better) Translates to: RSPHVWQISVAKELFLGCGLLEK*WEESMG Trigger: GCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCC...GCAGCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCACACATGTGGGGAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| CDS-3UTR CCA 90 bp | CGCTCCCCACATGTGTGGCAGATATCTGTAGCAAAGGAGCTGTTCTTGGGCTGCGCTGGGAAGAGTCCATaGGCCATCTCCTCCAGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: RSPHVWQISVAKELFLGCAGKSP*AISSSS Trigger: TGAACTGGAGGAGATGGCCCATGGACTCTTCCCAGC...GCAGCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCACACATGTGGGGAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| CDS-3UTR GCA 90 bp | TCCCCACATGTGTGGCAGATATCTGTAGCAAAGGAGCTGTTCTTGGGCTGCCTTCCTCCAGTTCAGACATaGCTAGAGCCTCCTCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: SPHVWQISVAKELFLGCLPPVQT*LEPPLS Trigger: TGAGAGAGGAGGCTCTAGGCATGTCTGAACTGGAGG...AAGGCAGCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCACACATGTGGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| CDS-3UTR GCA 90 bp | TTGGCTGTGTGCTGCAAAAGGTCCTTCAGGAAGGGCATGGAGAATTCATTGTTGCCATCTAGCACAGCCTaGAATGTTTCCAGGTCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: LAVCCKRSFRKGMENSLLPSSTA*NVSRSV Trigger: TACTGACCTGGAAACATTGCAGGCTGTGCTAGATGG...CAACAATGAATTCTCCATGCCCTTCCTGAAGGACCTTTTGCAGCACACAGCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| CDS-3UTR CCA 90 bp | AAGTTGGGCAAATCCTTCTACAGTGACTTGAGCAAATTCATCATAGCACTCCAGCCAGCTTCTGGAGTGTaGGTGGGGTATGAACACTCA | + |
|
Preference number: 4 (lower is better) Translates to: KLGKSFYSDLSKFIIALQPASGV*VGYEHS Trigger: TGAGTGTTCATACCCCACCCACACTCCAGAAGCTGG...CTGGAGTGCTATGATGAATTTGCTCAAGTCACTGTAGAAGGATTTGCCCAACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR CAA 72 bp | ATCCTGACAAAGTTGGGCAAATCCTTCTACAGTGACTaGAGCAAATTCATCATAGCACTCCAGAGGGGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: ILTKLGKSFYSD*SKFIIALQRGR Trigger: CCTGCCCCTCTGGAGTGCTATGATGAATTTGCTCAAGTCACTGTAGAAGGATTTGCCCAACTTTGTCAGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| CDS-3UTR GCA 90 bp | AAGTTGGGCAAATCCTTCTACAGTGACTTGAGCAAATTCATCATAGCACTCCAGGTGTCATCAAGCACCTaGAGGGCTTTCTTTTCATCC | + |
|
Preference number: 4 (lower is better) Translates to: KLGKSFYSDLSKFIIALQVSSST*RAFFSS Trigger: GGATGAAAAGAAAGCCCTGCAGGTGCTTGATGACAC...CTGGAGTGCTATGATGAATTTGCTCAAGTCACTGTAGAAGGATTTGCCCAACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| 3UTR CAA 72 bp | TATTGCCCTCAGTGTATCCATGAGATCCTGACAAAGTaGGGCAAATCCTTCTACAGTGACTTGAGCAAATTC | + |
|
Preference number: 4 (lower is better) Translates to: YCPQCIHEILTK*GKSFYSDLSKF Trigger: GAATTTGCTCAAGTCACTGTAGAAGGATTTGCCCAACTTTGTCAGGATCTCATGGATACACTGAGGGCAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| CDS CCA 90 bp | TGTCTGCCATCAAAGGCCTCCTTGAAAAGTGCTGGGAAGAGTCCATaGGCCATCTCCTCCAGTTCAGACATGCCTAGAGCCTCCTCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: CLPSKASLKSAGKSP*AISSSSDMPRASSL Trigger: GAGAGAGGAGGCTCTAGGCATGTCTGAACTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCTTTGATGGCAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS CCA 90 bp | CTCCTCTCTCACCAGAGTCTGAATTGCCAGCTTCTGGAGTGTGGGTaGGGTATGAACACTCATCTTCTTAAGGTCCAATGCCACATGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LLSHQSLNCQLLECG*GMNTHLLKVQCHMA Trigger: GGCCATGTGGCATTGGACCTTAAGAAGATGAGTGTTCATACCCCACCCACACTCCAGAAGCTGGCAATTCAGACTCTGGTGAGAGAGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163216.2 |
||
| CDS-3UTR CAA 90 bp | AGTTTAGCCACCTGGTCAAAGACCCAGCGCTCCCCACATGTGTGGCAGATATCTCCATCAAAGGCCTCCTaGAAAAGTGCTGGGAAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: SLATWSKTQRSPHVWQISPSKAS*KSAGKS Trigger: ACTCTTCCCAGCACTTTTCAAGGAGGCCTTTGATGG...AGATATCTGCCACACATGTGGGGAGCGCTGGGTCTTTGACCAGGTGGCTAAACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| CDS GCA 90 bp | CAATGCCCCCACAGGGAGACAGTGGAAAGGCCAGGCTATCACCAATaGCTTTATGAGCTTGATATGTCTGCCATCAAAGGCCTCCTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: QCPHRETVERPGYHQ*LYELDMSAIKGLLE Trigger: TTCAAGGAGGCCTTTGATGGCAGACATATCAAGCTCATAAAGGCATTGGTGATAGCCTGGCCTTTCCACTGTCTCCCTGTGGGGGCATTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS GCA 90 bp | CTTTATGAGCTTGATATGTCTGCCATCAAAGGCCTCCTTGAAAAGTaGTGGGAAGAGTCCATGGGCCATCTCCTCCAGTTCAGACATGCC | + |
|
Preference number: 5 (lower is better) Translates to: LYELDMSAIKGLLEK*WEESMGHLLQFRHA Trigger: GGCATGTCTGAACTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCTTTGATGGCAGACATATCAAGCTCATAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS CCA 90 bp | GTTTCCAGGTCAGTAGTCCTCATCAATGCCCCCACAGGGAGACAGTaGAAAGGCCAGGCTATCACCAATGCCTTTATGAGCTTGATATGT | + |
|
Preference number: 5 (lower is better) Translates to: VSRSVVLINAPTGRQ*KGQAITNAFMSLIC Trigger: ACATATCAAGCTCATAAAGGCATTGGTGATAGCCTGGCCTTTCCACTGTCTCCCTGTGGGGGCATTGATGAGGACTACTGACCTGGAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS GCA 90 bp | GTCTTTCATCCTACACCCCTGCAAATCCAGAGTCTCAAGAGTGCCTaGCACTTTCATGAGGAGACCTCTCAGAGGCATAAGATCCAAATC | + |
|
Preference number: 5 (lower is better) Translates to: VFHPTPLQIQSLKSA*HFHEETSQRHKIQI Trigger: GATTTGGATCTTATGCCTCTGAGAGGTCTCCTCATGAAAGTGGCAGGCACTCTTGAGACTCTGGATTTGCAGGGGTGTAGGATGAAAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS-3UTR CAA 90 bp | ACTACAAAGTTTAGCCACCTGGTCAAAGACCCAGCGCTCCCCACATGTGTGGCAAATGCCTTTATGAGCTaGATATGTCTGCCATCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: TTKFSHLVKDPALPTCVANAFMS*ICLPSK Trigger: CTTTGATGGCAGACATATCAAGCTCATAAAGGCATT...TGCCACACATGTGGGGAGCGCTGGGTCTTTGACCAGGTGGCTAAACTTTGTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238343.2 |
||
| CDS TCA 90 bp | GTAATGGAGAGGGTCTTCAAGGGTGTCATCAAGCACCCTAGGACCTaGTTCATCTGGGATCTGAGAAAATGGACGCAGAACATGAAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: VMERVFKGVIKHPRT*FIWDLRKWTQNMKR Trigger: TCTTTTCATGTTCTGCGTCCATTTTCTCAGATCCCAGATGAATCAGGTCCTAGGGTGCTTGATGACACCCTTGAAGACCCTCTCCATTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS TCA 90 bp | CTGAAAGAGGCTCTGACAGCAGGCAAAGGAATCCAAATCTCTCTGTaGAATCAGGGAGTAAGTAATGGAGAGGGTCTTCAAGGGTGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: LKEALTAGKGIQISL*NQGVSNGEGLQGCH Trigger: ATGACACCCTTGAAGACCCTCTCCATTACTTACTCCCTGATTTCACAGAGAGATTTGGATTCCTTTGCCTGCTGTCAGAGCCTCTTTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS CCA 90 bp | ACTTCAGTGACTCTTGTTCTATTGGGTAAATGGAAGTCGATTTTGTaGAGGGGTGCCAGGAAGACTTTGCGAAGATTTCTCATCTGCCCG | + |
|
Preference number: 5 (lower is better) Translates to: TSVTLVLLGKWKSIL*RGARKTLRRFLICP Trigger: CGGGCAGATGAGAAATCTTCGCAAAGTCTTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACTGAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS TCA 90 bp | ACGCAGAACATGAAAAGATGCTGCAGACAGTTGAATTTGGAGAACTaGGAAGCAAACTTGTTGATACACTTGACTTCAGTGACTCTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: TQNMKRCCRQLNLEN*EANLLIHLTSVTLV Trigger: AACAAGAGTCACTGAAGTCAAGTGTATCAACAAGTTTGCTTCTCAGTTCTCCAAATTCAACTGTCTGCAGCATCTTTTCATGTTCTGCGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS CCA 90 bp | TCAGTATTTAGTTCTAACTCCATGATATGCTCTGGATCAAAAACATaGAAGATCTGTCTGAGAGCTCTTTCTGGCAGAGTCCAGATTTTC | + |
|
Preference number: 5 (lower is better) Translates to: SVFSSNSMICSGSKT*KICLRALSGRVQIF Trigger: GAAAATCTGGACTCTGCCAGAAAGAGCTCTCAGACAGATCTTCCATGTTTTTGATCCAGAGCATATCATGGAGTTAGAACTAAATACTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS GCA 72 bp | GACCTGATGCACAGGTCAACTGTGACCTTCAGACGCTaGCTCAGTCCATATCTGGGACGGACCTGCAGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: DLMHRSTVTFRR*LSPYLGRTCRA Trigger: AGCCCTGCAGGTCCGTCCCAGATATGGACTGAGGCAGCGTCTGAAGGTCACAGTTGACCTGTGCATCAGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS CCA 72 bp | TCAAAGGCCTCCTTGAAAAGTGCTGGGAAGAGTCCATaGGCCATCTCCTCCAGTTCAGACATGCCTAGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: SKASLKSAGKSP*AISSSSDMPRA Trigger: GGCTCTAGGCATGTCTGAACTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS CAA 72 bp | ACATGCCTAGAGCCTCCTCTCTCACCAGAGTCTGAATaGCCAGCTTCTGGAGTGTGGGTGGGGTATGAACAC | + |
|
Preference number: 6 (lower is better) Translates to: TCLEPPLSPESE*PASGVWVGYEH Trigger: GTGTTCATACCCCACCCACACTCCAGAAGCTGGCAATTCAGACTCTGGTGAGAGAGGAGGCTCTAGGCATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS CCA 72 bp | TCAGTAGTCCTCATCAATGCCCCCACAGGGAGACAGTaGAAAGGCCAGGCTATCACCAATGCCTTTATGAGC | + |
|
Preference number: 6 (lower is better) Translates to: SVVLINAPTGRQ*KGQAITNAFMS Trigger: GCTCATAAAGGCATTGGTGATAGCCTGGCCTTTCCACTGTCTCCCTGTGGGGGCATTGATGAGGACTACTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS CCA 72 bp | GATATGTCTGCCATCAAAGGCCTCCTTGAAAAGTGCTaGGAAGAGTCCATGGGCCATCTCCTCCAGTTCAGA | + |
|
Preference number: 6 (lower is better) Translates to: DMSAIKGLLEKC*EESMGHLLQFR Trigger: TCTGAACTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCTTTGATGGCAGACATATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS CAA 90 bp | GGGAGACAGTGGAAAGGCCAGGCTATCACCAATGCCTTTATGAGCTaGATATGTCTGCCATCAAAGGCCTCCTTGAAAAGTGCTGGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: GRQWKGQAITNAFMS*ICLPSKASLKSAGK Trigger: CTTCCCAGCACTTTTCAAGGAGGCCTTTGATGGCAGACATATCAAGCTCATAAAGGCATTGGTGATAGCCTGGCCTTTCCACTGTCTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS TCA 72 bp | AGGGTCTTCAAGGGTGTCATCAAGCACCCTAGGACCTaGTTCATCTGGGATCTGAGAAAATGGACGCAGAAC | + |
|
Preference number: 6 (lower is better) Translates to: RVFKGVIKHPRT*FIWDLRKWTQN Trigger: GTTCTGCGTCCATTTTCTCAGATCCCAGATGAATCAGGTCCTAGGGTGCTTGATGACACCCTTGAAGACCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS CCA 72 bp | CACCAGAGTCTGAATTGCCAGCTTCTGGAGTGTGGGTaGGGTATGAACACTCATCTTCTTAAGGTCCAATGC | + |
|
Preference number: 6 (lower is better) Translates to: HQSLNCQLLECG*GMNTHLLKVQC Trigger: GCATTGGACCTTAAGAAGATGAGTGTTCATACCCCACCCACACTCCAGAAGCTGGCAATTCAGACTCTGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163216.2 |
||
| CDS TCA 72 bp | GCTCTGACAGCAGGCAAAGGAATCCAAATCTCTCTGTaGAATCAGGGAGTAAGTAATGGAGAGGGTCTTCAA | + |
|
Preference number: 6 (lower is better) Translates to: ALTAGKGIQISL*NQGVSNGEGLQ Trigger: TTGAAGACCCTCTCCATTACTTACTCCCTGATTTCACAGAGAGATTTGGATTCCTTTGCCTGCTGTCAGAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS CCA 72 bp | TTTGTACAGCAGAAATATAGGGAGCCCTTTCTCTCCTaGGCCCACTTCAAGAACCATGTTTGTGCTTCATCA | + |
|
Preference number: 6 (lower is better) Translates to: FVQQKYREPFLS*AHFKNHVCASS Trigger: TGATGAAGCACAAACATGGTTCTTGAAGTGGGCCCAGGAGAGAAAGGGCTCCCTATATTTCTGCTGTACAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS CCA 72 bp | CACTTGACTTCAGTGACTCTTGTTCTATTGGGTAAATaGAAGTCGATTTTGTGGAGGGGTGCCAGGAAGACT | + |
|
Preference number: 6 (lower is better) Translates to: HLTSVTLVLLGK*KSILWRGARKT Trigger: AGTCTTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACTGAAGTCAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS CAA 72 bp | TGGAAAGGCCAGGCTATCACCAATGCCTTTATGAGCTaGATATGTCTGCCATCAAAGGCCTCCTTGAAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: WKGQAITNAFMS*ICLPSKASLKS Trigger: ACTTTTCAAGGAGGCCTTTGATGGCAGACATATCAAGCTCATAAAGGCATTGGTGATAGCCTGGCCTTTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163216.2 ENSMUST00000238343.2 ENSMUST00000238517.2 |
||
| CDS CAA 90 bp | TTGACTTCAGTGACTCTTGTTCTATTGGGTAAATGGAAGTCGATTTaGTGGAGGGGTGCCAGGAAGACTTTGCGAAGATTTCTCATCTGC | + |
|
Preference number: 6 (lower is better) Translates to: LTSVTLVLLGKWKSI*WRGARKTLRRFLIC Trigger: GCAGATGAGAAATCTTCGCAAAGTCTTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACTGAAGTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS CCA 72 bp | ACTCTTGTTCTATTGGGTAAATGGAAGTCGATTTTGTaGAGGGGTGCCAGGAAGACTTTGCGAAGATTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: TLVLLGKWKSIL*RGARKTLRRFL Trigger: GAGAAATCTTCGCAAAGTCTTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS CAA 72 bp | GTGACTCTTGTTCTATTGGGTAAATGGAAGTCGATTTaGTGGAGGGGTGCCAGGAAGACTTTGCGAAGATTT | + |
|
Preference number: 6 (lower is better) Translates to: VTLVLLGKWKSI*WRGARKTLRRF Trigger: AAATCTTCGCAAAGTCTTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS CAA 90 bp | GAAGCAAACTTGTTGATACACTTGACTTCAGTGACTCTTGTTCTATaGGGTAAATGGAAGTCGATTTTGTGGAGGGGTGCCAGGAAGACT | + |
|
Preference number: 6 (lower is better) Translates to: EANLLIHLTSVTLVL*GKWKSILWRGARKT Trigger: AGTCTTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACTGAAGTCAAGTGTATCAACAAGTTTGCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS CAA 72 bp | TTGTTGATACACTTGACTTCAGTGACTCTTGTTCTATaGGGTAAATGGAAGTCGATTTTGTGGAGGGGTGCC | + |
|
Preference number: 6 (lower is better) Translates to: LLIHLTSVTLVL*GKWKSILWRGA Trigger: GGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACTGAAGTCAAGTGTATCAACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||
| CDS TCA 72 bp | CTATCAGAGTCCATTCAGTATTTAGTTCTAACTCCATaGTATGCTCTGGATCAAAAACATGGAAGATCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: LSESIQYLVLTP*YALDQKHGRSV Trigger: GACAGATCTTCCATGTTTTTGATCCAGAGCATATCATGGAGTTAGAACTAAATACTGAATGGACTCTGATAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000163216.2 ENSMUST00000238517.2 |
||