RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRAMEL44 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094195

Ensembl transcript IDs: ENSMUST00000098286.4, ENSMUST00000201552.2

Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCATGCCTGCCACTTTCATaGGGAGACCCCTCAGAGGCA +
Preference number: 4 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPCLPLS*GDPSEA
Trigger: TGCCTCTGAGGGGTCTCCTCATGAAAGTGGCAGGCA...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR CCA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCACCCACAGGGAGACAGTaGAAAGGCCAGGCTATAACC +
Preference number: 4 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPPTGRQ*KGQAIT
Trigger: GGTTATAGCCTGGCCTTTCCACTGTCTCCCTGTGGG...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR GCA 90 bp TTTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCCCTCCAGATCAGACATaGCTAGAGCCTGCTCTCTCA +
Preference number: 4 (lower is better)
Translates to: FGKTCVPNLIFIPIQNVPPPDQT*LEPALS
Trigger: TGAGAGAGCAGGCTCTAGGCATGTCTGATCTGGAGG...GGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR GCA 90 bp TTTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCCAGTTGGCTGTGTGCTaGAAAAGGTCCTTCGGGAAG +
Preference number: 4 (lower is better)
Translates to: FGKTCVPNLIFIPIQNVPQLAVC*KRSFGK
Trigger: CTTCCCGAAGGACCTTTTGCAGCACACAGCCAACTG...GGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR TCA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCATCTCTCACCAGAGTCTaGATTGCCAGCTTCTGGAGT +
Preference number: 4 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPSLTRV*IASFWS
Trigger: ACTCCAGAAGCTGGCAATTCAGACTCTGGTGAGAGA...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR TCA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCACATCAATGGCCTCCTTaGAAAGTGCTGGGAAGAGTC +
Preference number: 4 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPHQWPP*KVLGRV
Trigger: GACTCTTCCCAGCACTTTTCAAGGAGGCCATTGATG...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR TCA 90 bp TTTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCAAGCACCCTAGGACCTaGTTCATCTGGGATCTGAGA +
Preference number: 4 (lower is better)
Translates to: FGKTCVPNLIFIPIQNVPKHPRT*FIWDLR
Trigger: TCTCAGATCCCAGATGAATCAGGTCCTAGGGTGCTT...GGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR TCA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCATTTTTCCTCCTGGGGTaGAACCCTATGGTTCGACGA +
Preference number: 4 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPFFLLG*NPMVRR
Trigger: TCGTCGAACCATAGGGTTTCACCCCAGGAGGAAAAA...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR TCA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCAGCCAGGAAGACTTTGTaGAGATTTCTCATCTGCCCA +
Preference number: 4 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPARKTL*RFLICP
Trigger: TGGGCAGATGAGAAATCTTCACAAAGTCTTCCTGGC...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR TCA 90 bp TTTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCTCTGAGAGCATTGTTTaGATGCAGGTAGGAGGACAC +
Preference number: 4 (lower is better)
Translates to: FGKTCVPNLIFIPIQNVPSESIV*MQVGGH
Trigger: GTGTCCTCCTACCTGCATTCAAACAATGCTCTCAGA...GGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR TCA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCACTCTCAGTGTATCCATaGGATCCTGACAAACTTGGG +
Preference number: 4 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPLSVYP*DPDKLG
Trigger: CCCAAGTTTGTCAGGATCTCATGGATACACTGAGAG...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR GCA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCAGATTTTGTGGAGGGGTaGCAGGAAGACTTTGTGAAG +
Preference number: 4 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPDFVEG*QEDFVK
Trigger: CTTCACAAAGTCTTCCTGGCACCCCTCCACAAAATC...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR TCA 90 bp TTTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCGATGCTGCAGACAGTTaGATTTGGAGAACTGAGAAG +
Preference number: 4 (lower is better)
Translates to: FGKTCVPNLIFIPIQNVPDAADS*IWRTEK
Trigger: CTTCTCAGTTCTCCAAATTCAACTGTCTGCAGCATC...GGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR TCA 90 bp TTTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCGATTCATCTGGGATCTaGGAAAATGGACACAGAACA +
Preference number: 4 (lower is better)
Translates to: FGKTCVPNLIFIPIQNVPDSSGI*ENGHRT
Trigger: TGTTCTGTGTCCATTTTCTCAGATCCCAGATGAATC...GGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR GCA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCATTCATTCTACACCCCTaGAAATCCAGAGTCTCAAGA +
Preference number: 4 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPFILHP*KSRVSR
Trigger: TCTTGAGACTCTGGATTTGCAGGGGTGTAGAATGAA...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR TCA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCACATTGTTGTAGAAGTTaGTATTGGAGATCTGAGAGC +
Preference number: 4 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPHCCRS*YWRSES
Trigger: GCTCTCAGATCTCCAATATCAACTTCTACAACAATG...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS GCA 90 bp CATCATAGCACTCCAGAGGGGCAGGGTATTGTTCCACATTCATCTTaGTCCAGTTGGCTGTGTGCTGCAAAAGGTCCTTCGGGAAGGGCA +
Preference number: 5 (lower is better)
Translates to: HHSTPEGQGIVPHSS*SSWLCAAKGPSGRA
Trigger: TGCCCTTCCCGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCCTCTGGAGTGCTATGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS CCA 90 bp TATCTGCCATCAATGGCCTCCTTGAAAAGTGCTGGGAAGAGTCCATaGGCCATCTCCTCCAGATCAGACATGCCTAGAGCCTGCTCTCTC +
Preference number: 5 (lower is better)
Translates to: YLPSMASLKSAGKSP*AISSRSDMPRACSL
Trigger: GAGAGAGCAGGCTCTAGGCATGTCTGATCTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCATTGATGGCAGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS GCA 90 bp GCAGGTAGGAGGACACTGAGCTGGGAGTCCTTCATTCTACACCCCTaGAAATCCAGAGTCTCAAGAATGCCTGCCACTTTCATGAGGAGA +
Preference number: 5 (lower is better)
Translates to: AGRRTLSWESFILHP*KSRVSRMPATFMRR
Trigger: TCTCCTCATGAAAGTGGCAGGCATTCTTGAGACTCTGGATTTGCAGGGGTGTAGAATGAAGGACTCCCAGCTCAGTGTCCTCCTACCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS CCA 90 bp ACTCCAGAGGGGCAGGGTATTGTTCCACATTCATCTTGCTCCAGTTaGCTGTGTGCTGCAAAAGGTCCTTCGGGAAGGGCATGGAGAATT +
Preference number: 5 (lower is better)
Translates to: TPEGQGIVPHSSCSS*LCAAKGPSGRAWRI
Trigger: AATTCTCCATGCCCTTCCCGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCCTCTGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS GCA 90 bp GGGGCAGGGTATTGTTCCACATTCATCTTGCTCCAGTTGGCTGTGTaGTGCAAAAGGTCCTTCGGGAAGGGCATGGAGAATTCATTGTTG +
Preference number: 5 (lower is better)
Translates to: GAGYCSTFILLQLAV*CKRSFGKGMENSLL
Trigger: CAACAATGAATTCTCCATGCCCTTCCCGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS CCA 90 bp GTTTCCAGGTCAGTAGTCCTCATCAATGCCCCCACAGGGAGACAGTaGAAAGGCCAGGCTATAACCAATGCCTTTATGAGCTTGATATAT +
Preference number: 5 (lower is better)
Translates to: VSRSVVLINAPTGRQ*KGQAITNAFMSLIY
Trigger: ATATATCAAGCTCATAAAGGCATTGGTTATAGCCTGGCCTTTCCACTGTCTCCCTGTGGGGGCATTGATGAGGACTACTGACCTGGAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS-3UTR CAA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCATCACCAGAGTCTGAATaGCCAGCTTCTGGAGTATGG +
Preference number: 5 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPSPESE*PASGVW
Trigger: CCATACTCCAGAAGCTGGCAATTCAGACTCTGGTGA...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR CAA 90 bp TTTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCCCATCAATGGCCTCCTaGAAAAGTGCTGGGAAGAGT +
Preference number: 5 (lower is better)
Translates to: FGKTCVPNLIFIPIQNVPPSMAS*KSAGKS
Trigger: ACTCTTCCCAGCACTTTTCAAGGAGGCCATTGATGG...GGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR CAA 90 bp TTTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCAAATGGAAGTCGATTTaGTGGAGGGGTGCCAGGAAG +
Preference number: 5 (lower is better)
Translates to: FGKTCVPNLIFIPIQNVPKWKSI*WRGARK
Trigger: CTTCCTGGCACCCCTCCACAAAATCGACTTCCATTT...GGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR CAA 90 bp TTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCAGAGATCCTGACAAACTaGGGCAAATCTTTCTACAGA +
Preference number: 5 (lower is better)
Translates to: LVRHVSQTLFLFQSRMFPEILTN*GKSFYR
Trigger: TCTGTAGAAAGATTTGCCCAAGTTTGTCAGGATCTC...TGGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS-3UTR CAA 90 bp TTTGGTAAGACATGTGTCCCAAACCTTATTTTTATTCCAATCCAGAATGTTCCCAATGCCTTTATGAGCTaGATATATCTGCCATCAATG +
Preference number: 5 (lower is better)
Translates to: FGKTCVPNLIFIPIQNVPNAFMS*IYLPSM
Trigger: CATTGATGGCAGATATATCAAGCTCATAAAGGCATT...GGGAACATTCTGGATTGGAATAAAAATAAGGTTTGGGACACATGTCTTACCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS GCA 72 bp GCACAGGTCAACTGTGACCTTCAGACGCTGCCTCAGTaGATATCTGGGACGGACCTGCAGGGCTTTCTTTTC +
Preference number: 6 (lower is better)
Translates to: AQVNCDLQTLPQ*ISGTDLQGFLF
Trigger: GAAAAGAAAGCCCTGCAGGTCCGTCCCAGATATGCACTGAGGCAGCGTCTGAAGGTCACAGTTGACCTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS CAA 72 bp GGGGCAGGGTATTGTTCCACATTCATCTTGCTCCAGTaGGCTGTGTGCTGCAAAAGGTCCTTCGGGAAGGGC +
Preference number: 6 (lower is better)
Translates to: GAGYCSTFILLQ*AVCCKRSFGKG
Trigger: GCCCTTCCCGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS GCA 72 bp GGAAGAGTCCATGGGCCATCTCCTCCAGATCAGACATaGCTAGAGCCTGCTCTCTCACCAGAGTCTGAATTG +
Preference number: 6 (lower is better)
Translates to: GRVHGPSPPDQT*LEPALSPESEL
Trigger: CAATTCAGACTCTGGTGAGAGAGCAGGCTCTAGGCATGTCTGATCTGGAGGAGATGGCCCATGGACTCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS CCA 72 bp GGGCAGGGTATTGTTCCACATTCATCTTGCTCCAGTTaGCTGTGTGCTGCAAAAGGTCCTTCGGGAAGGGCA +
Preference number: 6 (lower is better)
Translates to: GQGIVPHSSCSS*LCAAKGPSGRA
Trigger: TGCCCTTCCCGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS CAA 90 bp CACTCCAGAGGGGCAGGGTATTGTTCCACATTCATCTTGCTCCAGTaGGCTGTGTGCTGCAAAAGGTCCTTCGGGAAGGGCATGGAGAAT +
Preference number: 6 (lower is better)
Translates to: HSRGAGYCSTFILLQ*AVCCKRSFGKGMEN
Trigger: ATTCTCCATGCCCTTCCCGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCCTCTGGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS CAA 72 bp CACTCCAGAGGGGCAGGGTATTGTTCCACATTCATCTaGCTCCAGTTGGCTGTGTGCTGCAAAAGGTCCTTC +
Preference number: 6 (lower is better)
Translates to: HSRGAGYCSTFI*LQLAVCCKRSF
Trigger: GAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCCTCTGGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS GCA 72 bp CTTTCTCTCCTGGGCCCACTTCAAGAACCATGTTTGTaGTTCATCAAGGCAGGACCTGATGCACAGGTCAAC +
Preference number: 6 (lower is better)
Translates to: LSLLGPLQEPCL*FIKAGPDAQVN
Trigger: GTTGACCTGTGCATCAGGTCCTGCCTTGATGAAGCACAAACATGGTTCTTGAAGTGGGCCCAGGAGAGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS GCA 72 bp TCTACACCCCTGCAAATCCAGAGTCTCAAGAATGCCTaGCACTTTCATGAGGAGACCCCTCAGAGGCATAAG +
Preference number: 6 (lower is better)
Translates to: STPLQIQSLKNA*HFHEETPQRHK
Trigger: CTTATGCCTCTGAGGGGTCTCCTCATGAAAGTGGCAGGCATTCTTGAGACTCTGGATTTGCAGGGGTGTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS GCA 72 bp AGGACACTGAGCTGGGAGTCCTTCATTCTACACCCCTaGAAATCCAGAGTCTCAAGAATGCCTGCCACTTTC +
Preference number: 6 (lower is better)
Translates to: RTLSWESFILHP*KSRVSRMPATF
Trigger: GAAAGTGGCAGGCATTCTTGAGACTCTGGATTTGCAGGGGTGTAGAATGAAGGACTCCCAGCTCAGTGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS CCA 72 bp TCAGTAGTCCTCATCAATGCCCCCACAGGGAGACAGTaGAAAGGCCAGGCTATAACCAATGCCTTTATGAGC +
Preference number: 6 (lower is better)
Translates to: SVVLINAPTGRQ*KGQAITNAFMS
Trigger: GCTCATAAAGGCATTGGTTATAGCCTGGCCTTTCCACTGTCTCCCTGTGGGGGCATTGATGAGGACTACTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS CAA 72 bp ACATGCCTAGAGCCTGCTCTCTCACCAGAGTCTGAATaGCCAGCTTCTGGAGTATGGGTGGGGTATGAACAT +
Preference number: 6 (lower is better)
Translates to: TCLEPALSPESE*PASGVWVGYEH
Trigger: ATGTTCATACCCCACCCATACTCCAGAAGCTGGCAATTCAGACTCTGGTGAGAGAGCAGGCTCTAGGCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS GCA 72 bp CTTGATATATCTGCCATCAATGGCCTCCTTGAAAAGTaGTGGGAAGAGTCCATGGGCCATCTCCTCCAGATC +
Preference number: 6 (lower is better)
Translates to: LDISAINGLLEK*WEESMGHLLQI
Trigger: GATCTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCATTGATGGCAGATATATCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS GCA 72 bp TGTTCCACATTCATCTTGCTCCAGTTGGCTGTGTGCTaGAAAAGGTCCTTCGGGAAGGGCATGGAGAATTCA +
Preference number: 6 (lower is better)
Translates to: CSTFILLQLAVC*KRSFGKGMENS
Trigger: TGAATTCTCCATGCCCTTCCCGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS CCA 72 bp GATATATCTGCCATCAATGGCCTCCTTGAAAAGTGCTaGGAAGAGTCCATGGGCCATCTCCTCCAGATCAGA +
Preference number: 6 (lower is better)
Translates to: DISAINGLLEKC*EESMGHLLQIR
Trigger: TCTGATCTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCATTGATGGCAGATATATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS CCA 72 bp GAGCATTGTTTGAATGCAGGTAGGAGGACACTGAGCTaGGAGTCCTTCATTCTACACCCCTGCAAATCCAGA +
Preference number: 6 (lower is better)
Translates to: EHCLNAGRRTLS*ESFILHPCKSR
Trigger: TCTGGATTTGCAGGGGTGTAGAATGAAGGACTCCCAGCTCAGTGTCCTCCTACCTGCATTCAAACAATGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS TCA 72 bp AGGGTCTTCAAGGGTGTCATCAAGCACCCTAGGACCTaGTTCATCTGGGATCTGAGAAAATGGACACAGAAC +
Preference number: 6 (lower is better)
Translates to: RVFKGVIKHPRT*FIWDLRKWTQN
Trigger: GTTCTGTGTCCATTTTCTCAGATCCCAGATGAATCAGGTCCTAGGGTGCTTGATGACACCCTTGAAGACCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS GCA 72 bp TATTGTTCCACATTCATCTTGCTCCAGTTGGCTGTGTaGTGCAAAAGGTCCTTCGGGAAGGGCATGGAGAAT +
Preference number: 6 (lower is better)
Translates to: YCSTFILLQLAV*CKRSFGKGMEN
Trigger: ATTCTCCATGCCCTTCCCGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS TCA 72 bp GCTCTGACAGCAGGCAAAGGAATCCAAATCTCTCTGTaGAACCAGGGAGTAAGTAATGGAGAGGGTCTTCAA +
Preference number: 6 (lower is better)
Translates to: ALTAGKGIQISL*NQGVSNGEGLQ
Trigger: TTGAAGACCCTCTCCATTACTTACTCCCTGGTTTCACAGAGAGATTTGGATTCCTTTGCCTGCTGTCAGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS GCA 72 bp CACAGGGAGACAGTGGAAAGGCCAGGCTATAACCAATaGCTTTATGAGCTTGATATATCTGCCATCAATGGC +
Preference number: 6 (lower is better)
Translates to: HRETVERPGYNQ*LYELDISAING
Trigger: GCCATTGATGGCAGATATATCAAGCTCATAAAGGCATTGGTTATAGCCTGGCCTTTCCACTGTCTCCCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS CAA 72 bp TTTATGAGCTTGATATATCTGCCATCAATGGCCTCCTaGAAAAGTGCTGGGAAGAGTCCATGGGCCATCTCC +
Preference number: 6 (lower is better)
Translates to: FMSLIYLPSMAS*KSAGKSPWAIS
Trigger: GGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCATTGATGGCAGATATATCAAGCTCATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS CAA 72 bp CATGTGTGGCAGATATCTGTAGCAAAGGAGCTGTTCTaGGGCTGCCTTATTGCTCTCAGTGTATCCATGAGA +
Preference number: 6 (lower is better)
Translates to: HVWQISVAKELF*GCLIALSVSMR
Trigger: TCTCATGGATACACTGAGAGCAATAAGGCAGCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCACACATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS GCA 72 bp ATCTGTAGCAAAGGAGCTGTTCTTGGGCTGCCTTATTaGTCTCAGTGTATCCATGAGATCCTGACAAACTTG +
Preference number: 6 (lower is better)
Translates to: ICSKGAVLGLPY*SQCIHEILTNL
Trigger: CAAGTTTGTCAGGATCTCATGGATACACTGAGAGCAATAAGGCAGCCCAAGAACAGCTCCTTTGCTACAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS CAA 72 bp ATCCTGACAAACTTGGGCAAATCTTTCTACAGAGACTaGAGCAAATTCATCATAGCACTCCAGAGGGGCAGG +
Preference number: 6 (lower is better)
Translates to: ILTNLGKSFYRD*SKFIIALQRGR
Trigger: CCTGCCCCTCTGGAGTGCTATGATGAATTTGCTCAAGTCTCTGTAGAAAGATTTGCCCAAGTTTGTCAGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201552.2
CDS CAA 72 bp TTGTTGATACACTTGACTTCGGTGACTCTTGTTCTATaGGGTAAATGGAAGTCGATTTTGTGGAGGGGTGCC +
Preference number: 6 (lower is better)
Translates to: LLIHLTSVTLVL*GKWKSILWRGA
Trigger: GGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACCGAAGTCAAGTGTATCAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS CAA 72 bp TGGAAAGGCCAGGCTATAACCAATGCCTTTATGAGCTaGATATATCTGCCATCAATGGCCTCCTTGAAAAGT +
Preference number: 6 (lower is better)
Translates to: WKGQAITNAFMS*IYLPSMASLKS
Trigger: ACTTTTCAAGGAGGCCATTGATGGCAGATATATCAAGCTCATAAAGGCATTGGTTATAGCCTGGCCTTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2
CDS TCA 72 bp CTAACAGAGTCCATTCAGTATTTAGTTCTAACTCCATaGTGTGCTCTGGATCAAAAACGTGGAAGATATGTC +
Preference number: 6 (lower is better)
Translates to: LTESIQYLVLTP*CALDQKRGRYV
Trigger: GACATATCTTCCACGTTTTTGATCCAGAGCACATCATGGAGTTAGAACTAAATACTGAATGGACTCTGTTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098286.4
ENSMUST00000201552.2