Pregenerated sensors for PRAMEL43 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095503

Ensembl transcript IDs: ENSMUST00000180178.2, ENSMUST00000201071.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	ATCTGTCCCAGCAGAGTCCACTCAAAACATCCAAGTTaGCTTTGCCAGTCCACAAGTCTGCTCCCCATGTCA	+
Preference number: 3 (lower is better) Translates to: ICPSRVHSKHPS*LCQSTSLLPMS Trigger: TGACATGGGGAGCAGACTTGTGGACTGGCAAAGGCAACTTGGATGTTTTGAGTGGACTCTGCTGGGACAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201071.4
CDS CCA 90 bp	ACTCCAGAGGGGCAGGGTACTGTTCCACATTCATCTTGTTCCAGTTaGCTGTTTGCTGTAAAAGGTCCTTCAGGATGGGCATGGAGAAGT	+
Preference number: 5 (lower is better) Translates to: TPEGQGTVPHSSCSS*LFAVKGPSGWAWRS Trigger: ACTTCTCCATGCCCATCCTGAAGGACCTTTTACAGCAAACAGCCAACTGGAACAAGATGAATGTGGAACAGTACCCTGCCCCTCTGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201071.4
CDS GCA 90 bp	CTAAGAGACCTCTCAGAGGCATCACATCCAAAATCTGTAAGACCATaGCTTTCATCTCCAGATGTTTTAGCTGAAAGAGACTCTGACAGC	+
Preference number: 5 (lower is better) Translates to: LRDLSEASHPKSVRP*LSSPDVLAERDSDS Trigger: GCTGTCAGAGTCTCTTTCAGCTAAAACATCTGGAGATGAAAGGCATGGTCTTACAGATTTTGGATGTGATGCCTCTGAGAGGTCTCTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000180178.2 ENSMUST00000201071.4
CDS CCA 90 bp	CTCATGTGGTCTGTGAGAAAGTGGACACCTTGCATGGAGAGATGCTaGAGACAATTGAATTTGGAGAAGATAGAAACGAAATCCTTGACA	+
Preference number: 5 (lower is better) Translates to: LMWSVRKWTPCMERC*RQLNLEKIETKSLT Trigger: TGTCAAGGATTTCGTTTCTATCTTCTCCAAATTCAATTGTCTCCAGCATCTCTCCATGCAAGGTGTCCACTTTCTCACAGACCACATGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180178.2 ENSMUST00000201071.4
CDS CCA 72 bp	TCTGTGAGAAAGTGGACACCTTGCATGGAGAGATGCTaGAGACAATTGAATTTGGAGAAGATAGAAACGAAA	+
Preference number: 6 (lower is better) Translates to: SVRKWTPCMERC*RQLNLEKIETK Trigger: TTTCGTTTCTATCTTCTCCAAATTCAATTGTCTCCAGCATCTCTCCATGCAAGGTGTCCACTTTCTCACAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180178.2 ENSMUST00000201071.4
CDS CAA 90 bp	AGAAAGTGGACACCTTGCATGGAGAGATGCTGGAGACAATTGAATTaGGAGAAGATAGAAACGAAATCCTTGACACACTTATCTTCTCTG	+
Preference number: 6 (lower is better) Translates to: RKWTPCMERCWRQLN*EKIETKSLTHLSSL Trigger: CAGAGAAGATAAGTGTGTCAAGGATTTCGTTTCTATCTTCTCCAAATTCAATTGTCTCCAGCATCTCTCCATGCAAGGTGTCCACTTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180178.2 ENSMUST00000201071.4

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