Pregenerated sensors for PRAMEL42 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095074Ensembl transcript IDs: ENSMUST00000178330.2, ENSMUST00000201138.4, ENSMUST00000202642.4
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTGACAGGATGTTCAGTGGGACCTGTAGGAAGAAACAAGGCATGGCTATTTAATTTCAGATCAACCTGTTaGCCAGTAGAGGGCAGCACA | + |
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Preference number: 2 (lower is better) Translates to: VTGCSVGPVGRNKAWLFNFRSTC*PVEGST Trigger: TGTGCTGCCCTCTACTGGCCAACAGGTTGATCTGAA...ATTAAATAGCCATGCCTTGTTTCTTCCTACAGGTCCCACTGAACATCCTGTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| 3UTR-3UTR TCA 90 bp | AAGGCATGGCTATTTAATACACAAAAGCTTCCCCAAGTAACTGTGTTGGGAACCTCTGAAGCAATACTGTaGTTCAGATCAACCTGTTGG | + |
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Preference number: 2 (lower is better) Translates to: KAWLFNTQKLPQVTVLGTSEAIL*FRSTCW Trigger: CCAACAGGTTGATCTGAATCACAGTATTGCTTCAGA...GGTTCCCAACACAGTTACTTGGGGAAGCTTTTGTGTATTAAATAGCCATGCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| 3UTR-3UTR CAA 90 bp | AAGGCATGGCTATTTAATACACAAAAGCTTCCCCAAGTAACTGTGTTGGGAACCATTCAGATCAACCTGTaGGCCAGTAGAGGGCAGCAC | + |
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Preference number: 3 (lower is better) Translates to: KAWLFNTQKLPQVTVLGTIQINL*ASRGQH Trigger: GTGCTGCCCTCTACTGGCCAACAGGTTGATCTGAAT...GGTTCCCAACACAGTTACTTGGGGAAGCTTTTGTGTATTAAATAGCCATGCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| 3UTR TCA 72 bp | GGGCAGAAGCCACATATAAATGCCAAACTGTTTTTCTaGCTCCATCATGCCCCTGGTCCAACAGTCTATTGG | + |
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Preference number: 3 (lower is better) Translates to: GQKPHINAKLFF*LHHAPGPTVYW Trigger: CCAATAGACTGTTGGACCAGGGGCATGATGGAGTCAGAAAAACAGTTTGGCATTTATATGTGGCTTCTGCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| 3UTR TCA 72 bp | GTAATACATATTTTGAAGAATGATCCTTACTGGCTCTaGAGCAATACTGTGATTCAGATCAACCTGTTGGCC | + |
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Preference number: 3 (lower is better) Translates to: VIHILKNDPYWL*SNTVIQINLLA Trigger: GGCCAACAGGTTGATCTGAATCACAGTATTGCTTCAGAGCCAGTAAGGATCATTCTTCAAAATATGTATTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS-3UTR GCA 90 bp | GCCAGTAGAGGGCAGCACAGACACACACTAAAAGTGCTTGGGGGTAGTGTGTTCACTTCCTCTTTAAGCTaGAGCTCCTGGTGGCTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: ASRGQHRHTLKVLGGSVFTSSLS*SSWWLL Trigger: CAAGAGCCACCAGGAGCTGCAGCTTAAAGAGGAAGT...GAACACACTACCCCCAAGCACTTTTAGTGTGTGTCTGTGCTGCCCTCTACTGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS-3UTR CCA 90 bp | GGGGGTAGTGTGTTCTCACCAAGGCCTAGGCTAAGAAGGTTCCCATCACCACCAGGTGGCTCTTGGGTATaGGAAGGTAAAAATAACATA | + |
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Preference number: 4 (lower is better) Translates to: GGSVFSPRPRLRRFPSPPGGSWV*EGKNNI Trigger: TATGTTATTTTTACCTTCCCATACCCAAGAGCCACC...TGGTGGTGATGGGAACCTTCTTAGCCTAGGCCTTGGTGAGAACACACTACCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS-3UTR CCA 90 bp | GTGACAGGATGTTCAGTGGGACCTGTAGGAAGAAACAAGGCATGGCTATTTAATACAAGAGGCCATGTGTaGCACTTCCCACACCAATTC | + |
|
Preference number: 4 (lower is better) Translates to: VTGCSVGPVGRNKAWLFNTRGHV*HFPHQF Trigger: GAATTGGTGTGGGAAGTGCCACACATGGCCTCTTGT...ATTAAATAGCCATGCCTTGTTTCTTCCTACAGGTCCCACTGAACATCCTGTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS-3UTR GCA 90 bp | AAGGCATGGCTATTTAATACACAAAAGCTTCCCCAAGTAACTGTGTTGGGAACCTCCTCCTTCGGCTCTTaGAAACAAGAGGCCATGTGT | + |
|
Preference number: 4 (lower is better) Translates to: KAWLFNTQKLPQVTVLGTSSFGS*KQEAMC Trigger: ACACATGGCCTCTTGTTTGCAAGAGCCGAAGGAGGA...GGTTCCCAACACAGTTACTTGGGGAAGCTTTTGTGTATTAAATAGCCATGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS-3UTR GCA 90 bp | AAGGCATGGCTATTTAATACACAAAAGCTTCCCCAAGTAACTGTGTTGGGAACCTCTCTTCCTCACCCTTaGTCAGGTGTTTCCAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: KAWLFNTQKLPQVTVLGTSLPHP*SGVSRA Trigger: TGCTCTGGAAACACCTGAGCAAGGGTGAGGAAGAGA...GGTTCCCAACACAGTTACTTGGGGAAGCTTTTGTGTATTAAATAGCCATGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS-3UTR CCA 90 bp | GGAAGAAACAAGGCATGGCTATTTAATACACAAAAGCTTCCCCAAGTAACTGTGTTAAGCTGCAGCTCCTaGTGGCTCTTGGGTATGGGA | + |
|
Preference number: 4 (lower is better) Translates to: GRNKAWLFNTQKLPQVTVLSCSS*WLLGMG Trigger: TCCCATACCCAAGAGCCACCAGGAGCTGCAGCTTAA...CACAGTTACTTGGGGAAGCTTTTGTGTATTAAATAGCCATGCCTTGTTTCTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| 3UTR CAA 72 bp | TATGGGAAGTGTCTGAAGTCACAGTCTCTGAGCACCTaGGATGAGAGATGTGTCCAAAGCATGTCATTTATT | + |
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Preference number: 4 (lower is better) Translates to: YGKCLKSQSLST*DERCVQSMSFI Trigger: AATAAATGACATGCTTTGGACACATCTCTCATCCAAGGTGCTCAGAGACTGTGACTTCAGACACTTCCCATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR GCA 90 bp | GCACCTTGGATGAGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTCATAGACACAGGTCTTaGCACAGTTTTGGCAGACAT | + |
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Preference number: 4 (lower is better) Translates to: APWMRDVSKACHLFIVRSHRHRS*HSFGRH Trigger: ATGTCTGCCAAAACTGTGGCAAGACCTGTGTCTATG...ACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCTCATCCAAGGTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR GCA 90 bp | GGACCTGTAGGAAGAAACAAGGCATGGCTATTTAATACACAAAAGCTTCCCCAAAAGGTTTCCAGGTTATaGATATTTATCAATGACCCC | + |
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Preference number: 4 (lower is better) Translates to: GPVGRNKAWLFNTQKLPQKVSRL*IFINDP Trigger: GGGGTCATTGATAAATATGCATAACCTGGAAACCTT...TTGGGGAAGCTTTTGTGTATTAAATAGCCATGCCTTGTTTCTTCCTACAGGTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS-3UTR GCA 90 bp | AGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTCCTGTATCCATGTTCCAGAAGACATGGTaGACATTTCTCATGTCGAGA | + |
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Preference number: 4 (lower is better) Translates to: RDVSKACHLFIVRSPVSMFQKTW*TFLMSR Trigger: TCTCGACATGAGAAATGTGCACCATGTCTTCTGGAA...CATGGATACAGGACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR CCA 90 bp | GCACCTTGGATGAGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTCCACAAATCTTTCTCTaGAGACATTACCCAATGCAT | + |
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Preference number: 4 (lower is better) Translates to: APWMRDVSKACHLFIVRSPQIFL*RHYPMH Trigger: ATGCATTGGGTAATGTCTCCAGAGAAAGATTTGTGG...ACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCTCATCCAAGGTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR GCA 90 bp | AGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTCCTGTATCCATGAAGGTTTCCAGGTTATaGATATTTATCAATGACCCC | + |
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Preference number: 4 (lower is better) Translates to: RDVSKACHLFIVRSPVSMKVSRL*IFINDP Trigger: GGGGTCATTGATAAATATGCATAACCTGGAAACCTT...CATGGATACAGGACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | GGGCAGCACAGACACACACTAAAAGTGCTTGGGGGTAGTGTGTTCTCACCAAGGCCCCACAGGGAGATATaGGAAAGGCCAGGCTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: GQHRHTLKVLGGSVFSPRPHREI*ERPGCH Trigger: GTGGCAGCCTGGCCTTTCCAATATCTCCCTGTGGGG...CCTTGGTGAGAACACACTACCCCCAAGCACTTTTAGTGTGTGTCTGTGCTGCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS CCA 90 bp | TATGAGCGAGTTGTGTCTGCCAGCAAAGGCCTCTTGGAACAGCCATaGGACGTACACAGCTGGCACGTTCTCCAGAGGGGATATGGCCAA | + |
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Preference number: 5 (lower is better) Translates to: YERVVSASKGLLEQP*DVHSWHVLQRGYGQ Trigger: TTGGCCATATCCCCTCTGGAGAACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGACACAACTCGCTCATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000178330.2 ENSMUST00000201138.4 ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | GCCAGTAGAGGGCAGCACAGACACACACTAAAAGTGCTTGGGGGTAGTGTGTTCGCCAGCAAAGGCCTCTaGGAACAGCCATGGGACGTA | + |
|
Preference number: 5 (lower is better) Translates to: ASRGQHRHTLKVLGGSVFASKGL*EQPWDV Trigger: TACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGC...GAACACACTACCCCCAAGCACTTTTAGTGTGTGTCTGTGCTGCCCTCTACTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS-3UTR CAA 90 bp | GGGGGTAGTGTGTTCTCACCAAGGCCTAGGCTAAGAAGGTTCCCATCACCACCACTCTCTTCCTCACCCTaGCTCAGGTGTTTCCAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GGSVFSPRPRLRRFPSPPLSSSP*LRCFQS Trigger: GCTCTGGAAACACCTGAGCAAGGGTGAGGAAGAGAG...TGGTGGTGATGGGAACCTTCTTAGCCTAGGCCTTGGTGAGAACACACTACCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS CCA 90 bp | ACCATTGTCTTTATGAGCGAGTTGTGTCTGCCAGCAAAGGCCTCTTaGAACAGCCATGGGACGTACACAGCTGGCACGTTCTCCAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: TIVFMSELCLPAKAS*NSHGTYTAGTFSRG Trigger: CCCTCTGGAGAACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGACACAACTCGCTCATAAAGACAATGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178330.2 ENSMUST00000201138.4 ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | GGGCAGCACAGACACACACTAAAAGTGCTTGGGGGTAGTGTGTTCTCACCAAGGTCCTACCAGCAGACTTaGCTCCTTCAGGAAACCATT | + |
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Preference number: 5 (lower is better) Translates to: GQHRHTLKVLGGSVFSPRSYQQT*LLQETI Trigger: AATGGTTTCCTGAAGGAGCAAAGTCTGCTGGTAGGA...CCTTGGTGAGAACACACTACCCCCAAGCACTTTTAGTGTGTGTCTGTGCTGCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS-3UTR CAA 90 bp | GCACCTTGGATGAGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTCCCCACAGGGAGATATaGGAAAGGCCAGGCTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: APWMRDVSKACHLFIVRSPHREI*ERPGCH Trigger: GTGGCAGCCTGGCCTTTCCAATATCTCCCTGTGGGG...ACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCTCATCCAAGGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | GCACCTTGGATGAGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTGCCAGCAAAGGCCTCTaGGAACAGCCATGGGACGTA | + |
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Preference number: 5 (lower is better) Translates to: APWMRDVSKACHLFIVRSASKGL*EQPWDV Trigger: TACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGC...ACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCTCATCCAAGGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS TCA 90 bp | ATGCTCTTAGGCTCTCTTTTGGCCCTGAGGGTATCCATGAGCTCCTaGCAAAGTTCCACAAATCTTTCTCTGGAGACATTACCCAATGCA | + |
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Preference number: 5 (lower is better) Translates to: MLLGSLLALRVSMSS*QSSTNLSLETLPNA Trigger: TGCATTGGGTAATGTCTCCAGAGAAAGATTTGTGGAACTTTGTCAGGAGCTCATGGATACCCTCAGGGCCAAAAGAGAGCCTAAGAGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178330.2 ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | AGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTCCTGTATCCATGAACAGGAACAAAGCCTaGCCCCCTGGCCATAGACAC | + |
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Preference number: 5 (lower is better) Translates to: RDVSKACHLFIVRSPVSMNRNKA*PPGHRH Trigger: GTGTCTATGGCCAGGGGGCAAGGCTTTGTTCCTGTT...CATGGATACAGGACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS GCA 90 bp | CTCCTGACAAAGTTCCACAAATCTTTCTCTGGAGACATTACCCAATaGATCATAGCACTCCAGAGGGACAGGGTATTGTTCCACATTCAT | + |
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Preference number: 5 (lower is better) Translates to: LLTKFHKSFSGDITQ*IIALQRDRVLFHIH Trigger: ATGAATGTGGAACAATACCCTGTCCCTCTGGAGTGCTATGATGCATTGGGTAATGTCTCCAGAGAAAGATTTGTGGAACTTTGTCAGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178330.2 ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | AGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTCCTGTATCCATGCAGAGTCACTGTCATTaGCATCGCTCCCTATGTTCC | + |
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Preference number: 5 (lower is better) Translates to: RDVSKACHLFIVRSPVSMQSHCH*HRSLCS Trigger: GGAACATAGGGAGCGATGCAAATGACAGTGACTCTG...CATGGATACAGGACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | GCACCTTGGATGAGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTAAGGGCCTTCACTACTaGCTTTTCATCCAAGGTCTC | + |
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Preference number: 5 (lower is better) Translates to: APWMRDVSKACHLFIVRSKGLHY*LFIQGL Trigger: GAGACCTTGGATGAAAAGCAAGTAGTGAAGGCCCTT...ACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCTCATCCAAGGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | GTGACAGGATGTTCAGTGGGACCTGTAGGAAGAAACAAGGCATGGCTATTTAATTCCTTCAGGAAACCATaGATAAGAAATGCCAGTCTC | + |
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Preference number: 5 (lower is better) Translates to: VTGCSVGPVGRNKAWLFNSFRKP*IRNASL Trigger: GAGACTGGCATTTCTTATCAATGGTTTCCTGAAGGA...ATTAAATAGCCATGCCTTGTTTCTTCCTACAGGTCCCACTGAACATCCTGTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS-3UTR CAA 90 bp | GCACCTTGGATGAGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTGACCCCTTTCTCTGCTaGGCCCAATTCAAGAAATAT | + |
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Preference number: 5 (lower is better) Translates to: APWMRDVSKACHLFIVRSDPFLC*AQFKKY Trigger: ATATTTCTTGAATTGGGCCAAGCAGAGAAAGGGGTC...ACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCTCATCCAAGGTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | AGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTCCTGTATCCATGCAGAGGGACAGGGTATaGTTCCACATTCATCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: RDVSKACHLFIVRSPVSMQRDRV*FHIHLA Trigger: AGCAAGATGAATGTGGAACAATACCCTGTCCCTCTG...CATGGATACAGGACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | GCACCTTGGATGAGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTGGTCTTGCCACAGTTTaGGCAGACATTTGTTGCAAA | + |
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Preference number: 5 (lower is better) Translates to: APWMRDVSKACHLFIVRSGLATV*ADICCK Trigger: TTTGCAACAAATGTCTGCCAAAACTGTGGCAAGACC...ACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCTCATCCAAGGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | GCACCTTGGATGAGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTATTTCTCTGATAACTTaGTCTGGTGCATCCCAGATC | + |
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Preference number: 5 (lower is better) Translates to: APWMRDVSKACHLFIVRSISLIT*SGASQI Trigger: GATCTGGGATGCACCAGACAAAGTTATCAGAGAAAT...ACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCTCATCCAAGGTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | GCACCTTGGATGAGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTCCCAGATCTTCATCTTaGTACAGCAGAAATTTATGG | + |
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Preference number: 5 (lower is better) Translates to: APWMRDVSKACHLFIVRSPRSSS*YSRNLW Trigger: CCATAAATTTCTGCTGTACAAAGATGAAGATCTGGG...ACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCTCATCCAAGGTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS-3UTR CAA 90 bp | AGAGATGTGTCCAAAGCATGTCATTTATTCATAGTCAGAAGTCCTGTATCCATGTTTCATGAAGACATGTaGGAGACAGTTGAATTTGGA | + |
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Preference number: 5 (lower is better) Translates to: RDVSKACHLFIVRSPVSMFHEDM*ETVEFG Trigger: TCCAAATTCAACTGTCTCCAACATGTCTTCATGAAA...CATGGATACAGGACTTCTGACTATGAATAAATGACATGCTTTGGACACATCTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202642.4 |
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| CDS CAA 90 bp | CACCATTGTCTTTATGAGCGAGTTGTGTCTGCCAGCAAAGGCCTCTaGGAACAGCCATGGGACGTACACAGCTGGCACGTTCTCCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: HHCLYERVVSASKGL*EQPWDVHSWHVLQR Trigger: CCTCTGGAGAACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGACACAACTCGCTCATAAAGACAATGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178330.2 ENSMUST00000201138.4 ENSMUST00000202642.4 |
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| CDS CCA 72 bp | TTTATGAGCGAGTTGTGTCTGCCAGCAAAGGCCTCTTaGAACAGCCATGGGACGTACACAGCTGGCACGTTC | + |
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Preference number: 6 (lower is better) Translates to: FMSELCLPAKAS*NSHGTYTAGTF Trigger: GAACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGACACAACTCGCTCATAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178330.2 ENSMUST00000201138.4 ENSMUST00000202642.4 |
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| CDS CAA 72 bp | CTTTATGAGCGAGTTGTGTCTGCCAGCAAAGGCCTCTaGGAACAGCCATGGGACGTACACAGCTGGCACGTT | + |
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Preference number: 6 (lower is better) Translates to: LYERVVSASKGL*EQPWDVHSWHV Trigger: AACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGACACAACTCGCTCATAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178330.2 ENSMUST00000201138.4 ENSMUST00000202642.4 |
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| CDS CAA 72 bp | ACCCAATGCATCATAGCACTCCAGAGGGACAGGGTATaGTTCCACATTCATCTTGCTCCAGGTGGCTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: TQCIIALQRDRV*FHIHLAPGGCV Trigger: CACACAGCCACCTGGAGCAAGATGAATGTGGAACAATACCCTGTCCCTCTGGAGTGCTATGATGCATTGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178330.2 ENSMUST00000202642.4 |
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| CDS CAA 90 bp | GGAGACATTACCCAATGCATCATAGCACTCCAGAGGGACAGGGTATaGTTCCACATTCATCTTGCTCCAGGTGGCTGTGTGCTGCAAAAG | + |
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Preference number: 6 (lower is better) Translates to: GDITQCIIALQRDRV*FHIHLAPGGCVLQK Trigger: CTTTTGCAGCACACAGCCACCTGGAGCAAGATGAATGTGGAACAATACCCTGTCCCTCTGGAGTGCTATGATGCATTGGGTAATGTCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178330.2 ENSMUST00000202642.4 |
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| CDS CAA 72 bp | CTGCCTCAGTGCATATCTGGGAAGGGCCTTCACTACTaGCTTTTCATCCAAGGTCTCTGCATCAGAGTCACT | + |
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Preference number: 6 (lower is better) Translates to: LPQCISGKGLHY*LFIQGLCIRVT Trigger: AGTGACTCTGATGCAGAGACCTTGGATGAAAAGCAAGTAGTGAAGGCCCTTCCCAGATATGCACTGAGGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178330.2 ENSMUST00000202642.4 |
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| CDS CAA 72 bp | TGCCCCCTGGCCATAGACACAGGTCTTGCCACAGTTTaGGCAGACATTTGTTGCAAAAGATATGCTCTTAGG | + |
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Preference number: 6 (lower is better) Translates to: CPLAIDTGLATV*ADICCKRYALR Trigger: CCTAAGAGCATATCTTTTGCAACAAATGTCTGCCAAAACTGTGGCAAGACCTGTGTCTATGGCCAGGGGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178330.2 ENSMUST00000202642.4 |
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| CDS CAA 90 bp | ACAAAGCCTTGCCCCCTGGCCATAGACACAGGTCTTGCCACAGTTTaGGCAGACATTTGTTGCAAAAGATATGCTCTTAGGCTCTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: TKPCPLAIDTGLATV*ADICCKRYALRLSF Trigger: AAAAGAGAGCCTAAGAGCATATCTTTTGCAACAAATGTCTGCCAAAACTGTGGCAAGACCTGTGTCTATGGCCAGGGGGCAAGGCTTTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178330.2 ENSMUST00000202642.4 |
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| CDS CAA 72 bp | TTTCCTACCAGCAGACTTTGCTCCTTCAGGAAACCATaGATAAGAAATGCCAGTCTCTCTTCCTCACCCTTG | + |
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Preference number: 6 (lower is better) Translates to: FPTSRLCSFRKP*IRNASLSSSPL Trigger: CAAGGGTGAGGAAGAGAGACTGGCATTTCTTATCAATGGTTTCCTGAAGGAGCAAAGTCTGCTGGTAGGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201138.4 |
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| CDS GCA 72 bp | AAGTTCCACAAATCTTTCTCTGGAGACATTACCCAATaGATCATAGCACTCCAGAGGGACAGGGTATTGTTC | + |
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Preference number: 6 (lower is better) Translates to: KFHKSFSGDITQ*IIALQRDRVLF Trigger: GAACAATACCCTGTCCCTCTGGAGTGCTATGATGCATTGGGTAATGTCTCCAGAGAAAGATTTGTGGAACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178330.2 ENSMUST00000202642.4 |
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| CDS CAA 72 bp | GTCTCTGAGAAAATGGACACGTTTCATGAAGACATGTaGGAGACAGTTGAATTTGGAAAACTGAGAAATAAT | + |
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Preference number: 6 (lower is better) Translates to: VSEKMDTFHEDM*ETVEFGKLRNN Trigger: ATTATTTCTCAGTTTTCCAAATTCAACTGTCTCCAACATGTCTTCATGAAACGTGTCCATTTTCTCAGAGAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178330.2 ENSMUST00000202642.4 |
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