Pregenerated sensors for PRAMEL41 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074011

Ensembl transcript IDs: ENSMUST00000098289.4, ENSMUST00000202916.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GTCCTTCATCCTACACCCCTGCAAATCCAGAGTCTCAAGAGTGCCTaGCACTTTCATGAGGAGACCTCTCAGAGGCATAAGATCCAAATC	+
Preference number: 5 (lower is better) Translates to: VLHPTPLQIQSLKSA*HFHEETSQRHKIQI Trigger: GATTTGGATCTTATGCCTCTGAGAGGTCTCCTCATGAAAGTGGCAGGCACTCTTGAGACTCTGGATTTGCAGGGGTGTAGGATGAAGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CCA 90 bp	GTTTCCAGGTCAGTAGTCCTCATCAATGCCCCCACAGGGAGACAGTaGAAAGGCCAGGCTATCACCAATGCCTTTATGAGCTTGATATAC	+
Preference number: 5 (lower is better) Translates to: VSRSVVLINAPTGRQ*KGQAITNAFMSLIY Trigger: GTATATCAAGCTCATAAAGGCATTGGTGATAGCCTGGCCTTTCCACTGTCTCCCTGTGGGGGCATTGATGAGGACTACTGACCTGGAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS TCA 90 bp	CTGAAAGAGGCTCTGACAGCAGGCAAAGGAATCCAAATCTCTCTGTaGAATCAGGGAGTAAGTAATGGAGAAGGTCTTCAAGGGTGTCAT	+
Preference number: 5 (lower is better) Translates to: LKEALTAGKGIQISL*NQGVSNGEGLQGCH Trigger: ATGACACCCTTGAAGACCTTCTCCATTACTTACTCCCTGATTTCACAGAGAGATTTGGATTCCTTTGCCTGCTGTCAGAGCCTCTTTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS TCA 90 bp	GTAATGGAGAAGGTCTTCAAGGGTGTCATCAAGCACCCTAGGACCTaGTTCATCTGGGATCTGAGAAAATGGACACAGAACATGAAAAGA	+
Preference number: 5 (lower is better) Translates to: VMEKVFKGVIKHPRT*FIWDLRKWTQNMKR Trigger: TCTTTTCATGTTCTGTGTCCATTTTCTCAGATCCCAGATGAATCAGGTCCTAGGGTGCTTGATGACACCCTTGAAGACCTTCTCCATTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CCA 72 bp	TCAATGGCCTCCTTGAAATGTGCTGGGAAGAGTCCATaGGCCATCTCCTCCAGATCAGACATGCCTAGAGCC	+
Preference number: 6 (lower is better) Translates to: SMASLKCAGKSP*AISSRSDMPRA Trigger: GGCTCTAGGCATGTCTGATCTGGAGGAGATGGCCCATGGACTCTTCCCAGCACATTTCAAGGAGGCCATTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CCA 72 bp	GGGCAGGGTATTGTTCCACATTCATCTTGCTCCAGTTaGCTGTGTGCTGCAAAAGGTCCTTCAGGAAGGGCA	+
Preference number: 6 (lower is better) Translates to: GQGIVPHSSCSS*LCAAKGPSGRA Trigger: TGCCCTTCCTGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS GCA 72 bp	CTTGATATACCTGCCATCAATGGCCTCCTTGAAATGTaGTGGGAAGAGTCCATGGGCCATCTCCTCCAGATC	+
Preference number: 6 (lower is better) Translates to: LDIPAINGLLEM*WEESMGHLLQI Trigger: GATCTGGAGGAGATGGCCCATGGACTCTTCCCAGCACATTTCAAGGAGGCCATTGATGGCAGGTATATCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CCA 72 bp	GATATACCTGCCATCAATGGCCTCCTTGAAATGTGCTaGGAAGAGTCCATGGGCCATCTCCTCCAGATCAGA	+
Preference number: 6 (lower is better) Translates to: DIPAINGLLEMC*EESMGHLLQIR Trigger: TCTGATCTGGAGGAGATGGCCCATGGACTCTTCCCAGCACATTTCAAGGAGGCCATTGATGGCAGGTATATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CAA 72 bp	TTTATGAGCTTGATATACCTGCCATCAATGGCCTCCTaGAAATGTGCTGGGAAGAGTCCATGGGCCATCTCC	+
Preference number: 6 (lower is better) Translates to: FMSLIYLPSMAS*KCAGKSPWAIS Trigger: GGAGATGGCCCATGGACTCTTCCCAGCACATTTCAAGGAGGCCATTGATGGCAGGTATATCAAGCTCATAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS TCA 72 bp	AAGGTCTTCAAGGGTGTCATCAAGCACCCTAGGACCTaGTTCATCTGGGATCTGAGAAAATGGACACAGAAC	+
Preference number: 6 (lower is better) Translates to: KVFKGVIKHPRT*FIWDLRKWTQN Trigger: GTTCTGTGTCCATTTTCTCAGATCCCAGATGAATCAGGTCCTAGGGTGCTTGATGACACCCTTGAAGACCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CCA 72 bp	CACTTGACTTCGGTGACTCTTGTTCTATTGGGTAAATaGAAGTCGATTTTGTGGAGGGGTGCCAGGAATACT	+
Preference number: 6 (lower is better) Translates to: HLTSVTLVLLGK*KSILWRGARNT Trigger: AGTATTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACCGAAGTCAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CAA 72 bp	TGGAAAGGCCAGGCTATCACCAATGCCTTTATGAGCTaGATATACCTGCCATCAATGGCCTCCTTGAAATGT	+
Preference number: 6 (lower is better) Translates to: WKGQAITNAFMS*IYLPSMASLKC Trigger: ACATTTCAAGGAGGCCATTGATGGCAGGTATATCAAGCTCATAAAGGCATTGGTGATAGCCTGGCCTTTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CAA 72 bp	ATCCTGACAAAGTCGCACAAATCTTTCTACAGAGACTaGAGCAAATTCATCATAGCACTCCAGAGGGGCAGG	+
Preference number: 6 (lower is better) Translates to: ILTKSHKSFYRD*SKFIIALQRGR Trigger: CCTGCCCCTCTGGAGTGCTATGATGAATTTGCTCAAGTCTCTGTAGAAAGATTTGTGCGACTTTGTCAGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS TCA 72 bp	GCTCTGACAGCAGGCAAAGGAATCCAAATCTCTCTGTaGAATCAGGGAGTAAGTAATGGAGAAGGTCTTCAA	+
Preference number: 6 (lower is better) Translates to: ALTAGKGIQISL*NQGVSNGEGLQ Trigger: TTGAAGACCTTCTCCATTACTTACTCCCTGATTTCACAGAGAGATTTGGATTCCTTTGCCTGCTGTCAGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CCA 72 bp	CTGTCCTCTGAATCAGTCCATATGTTCCAGAAGCTATaGTGCACATTCCTCAGGTCGAGATACTGTAGTTTT	+
Preference number: 6 (lower is better) Translates to: LSSESVHMFQKL*CTFLRSRYCSF Trigger: AAAACTACAGTATCTCGACCTGAGGAATGTGCACCATAGCTTCTGGAACATATGGACTGATTCAGAGGACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CAA 90 bp	GAAACAAACTTGTTGATACACTTGACTTCGGTGACTCTTGTTCTATaGGGTAAATGGAAGTCGATTTTGTGGAGGGGTGCCAGGAATACT	+
Preference number: 6 (lower is better) Translates to: ETNLLIHLTSVTLVL*GKWKSILWRGARNT Trigger: AGTATTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACCGAAGTCAAGTGTATCAACAAGTTTGTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CCA 72 bp	ACTCTTGTTCTATTGGGTAAATGGAAGTCGATTTTGTaGAGGGGTGCCAGGAATACTTTGCAAAGATTTCTC	+
Preference number: 6 (lower is better) Translates to: TLVLLGKWKSIL*RGARNTLQRFL Trigger: GAGAAATCTTTGCAAAGTATTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS CAA 72 bp	GTGACTCTTGTTCTATTGGGTAAATGGAAGTCGATTTaGTGGAGGGGTGCCAGGAATACTTTGCAAAGATTT	+
Preference number: 6 (lower is better) Translates to: VTLVLLGKWKSI*WRGARNTLQRF Trigger: AAATCTTTGCAAAGTATTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2
CDS TCA 72 bp	CTAAAAGAGTCCATTCAGTGTTTAGTTCTAACTCCATaGTGTGCTCTGGATCAAAAATGTGGAAGATATGTC	+
Preference number: 6 (lower is better) Translates to: LKESIQCLVLTP*CALDQKCGRYV Trigger: GACATATCTTCCACATTTTTGATCCAGAGCACATCATGGAGTTAGAACTAAACACTGAATGGACTCTTTTAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098289.4 ENSMUST00000202916.2