Pregenerated sensors for PRAMEL40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095718Ensembl transcript IDs: ENSMUST00000086050.3, ENSMUST00000097478.4
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGTCTGCCATCAATGGCCTCCTTGAAAAGTGCTGGGAAGAGTCCATaGGCCATCTCCTCCAGATCAGACATGCCTAGAGCCTCCTCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: CLPSMASLKSAGKSP*AISSRSDMPRASSL Trigger: GAGAGAGGAGGCTCTAGGCATGTCTGATCTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCATTGATGGCAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS GCA 90 bp | GCAGGTAGGAGGACACTGAGCTGGGAGTCCTTCATCCTACACCCCTaGAAATCCAGAGTCTCAAGAATGCCTGCCACTTTCATGAGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: AGRRTLSWESFILHP*KSRVSRMPATFMRR Trigger: TCTCCTCATGAAAGTGGCAGGCATTCTTGAGACTCTGGATTTGCAGGGGTGTAGGATGAAGGACTCCCAGCTCAGTGTCCTCCTACCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS GCA 90 bp | GTCCTTCATCCTACACCCCTGCAAATCCAGAGTCTCAAGAATGCCTaGCACTTTCATGAGGAGACCCCTCAGAGGCATAAGATCCAAATC | + |
|
Preference number: 5 (lower is better) Translates to: VLHPTPLQIQSLKNA*HFHEETPQRHKIQI Trigger: GATTTGGATCTTATGCCTCTGAGGGGTCTCCTCATGAAAGTGGCAGGCATTCTTGAGACTCTGGATTTGCAGGGGTGTAGGATGAAGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS TCA 90 bp | CTGAAAGAGGCTCTGACAGCAGGCAAAGGAATCCAAATCTCTCTGTaGAACCAGGGAGTAAGTAATGGAGAGGGTCTTCAAGGGTGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: LKEALTAGKGIQISL*NQGVSNGEGLQGCH Trigger: ATGACACCCTTGAAGACCCTCTCCATTACTTACTCCCTGGTTTCACAGAGAGATTTGGATTCCTTTGCCTGCTGTCAGAGCCTCTTTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS GCA 90 bp | GTGGCAGATATCTGTAGCAAAGGAGCTGTTCTTGGGCTGCCTTATTaGTCTCAGTGTATCCATGAGATCCTGACAAACTTGGGCAAATCT | + |
|
Preference number: 5 (lower is better) Translates to: VADICSKGAVLGLPY*SQCIHEILTNLGKS Trigger: AGATTTGCCCAAGTTTGTCAGGATCTCATGGATACACTGAGAGCAATAAGGCAGCCCAAGAACAGCTCCTTTGCTACAGATATCTGCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086050.3 |
||
| CDS CCA 90 bp | ACTTCGGTGACTCTTGTTCTATTGGGTAAATGGAAGTCGATTTTGTaGAGGGGTGCCAGGAAGACTTTGCGAAGATTTCTCATCTGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: TSVTLVLLGKWKSIL*RGARKTLRRFLICP Trigger: TGGGCAGATGAGAAATCTTCGCAAAGTCTTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACCGAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS TCA 90 bp | GTAATGGAGAGGGTCTTCAAGGGTGTCATCAAGCACCCTAGGACCTaGTTCATCTGGGATCTGAGAAAATGGACACAGAACATGAAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: VMERVFKGVIKHPRT*FIWDLRKWTQNMKR Trigger: TCTTTTCATGTTCTGTGTCCATTTTCTCAGATCCCAGATGAATCAGGTCCTAGGGTGCTTGATGACACCCTTGAAGACCCTCTCCATTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CCA 90 bp | ATTTTCATCTTTGTACAGCAGAAATATAGGGAGCCCTTTCTCTCCTaGGCCCACTTCAAGAACCATATTTGTGCTTCATCAAGGCAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: IFIFVQQKYREPFLS*AHFKNHICASSRQD Trigger: GTCCTGCCTTGATGAAGCACAAATATGGTTCTTGAAGTGGGCCCAGGAGAGAAAGGGCTCCCTATATTTCTGCTGTACAAAGATGAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS TCA 90 bp | ACACAGAACATGAAAAGATGCTGCAGACAGTTGAATTTGGAGAACTaGGAAGCAAACTTGTTGATACACTTGACTTCGGTGACTCTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: TQNMKRCCRQLNLEN*EANLLIHLTSVTLV Trigger: AACAAGAGTCACCGAAGTCAAGTGTATCAACAAGTTTGCTTCTCAGTTCTCCAAATTCAACTGTCTGCAGCATCTTTTCATGTTCTGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CCA 72 bp | TCAATGGCCTCCTTGAAAAGTGCTGGGAAGAGTCCATaGGCCATCTCCTCCAGATCAGACATGCCTAGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: SMASLKSAGKSP*AISSRSDMPRA Trigger: GGCTCTAGGCATGTCTGATCTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCATTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS GCA 72 bp | CCTACACCCCTGCAAATCCAGAGTCTCAAGAATGCCTaGCACTTTCATGAGGAGACCCCTCAGAGGCATAAG | + |
|
Preference number: 6 (lower is better) Translates to: PTPLQIQSLKNA*HFHEETPQRHK Trigger: CTTATGCCTCTGAGGGGTCTCCTCATGAAAGTGGCAGGCATTCTTGAGACTCTGGATTTGCAGGGGTGTAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS GCA 72 bp | AGGACACTGAGCTGGGAGTCCTTCATCCTACACCCCTaGAAATCCAGAGTCTCAAGAATGCCTGCCACTTTC | + |
|
Preference number: 6 (lower is better) Translates to: RTLSWESFILHP*KSRVSRMPATF Trigger: GAAAGTGGCAGGCATTCTTGAGACTCTGGATTTGCAGGGGTGTAGGATGAAGGACTCCCAGCTCAGTGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CAA 72 bp | ACATGCCTAGAGCCTCCTCTCTCACCAGAGTCTGAATaGCCAGCTTCTGGAGTGTGGGTGGGGTATGAACAT | + |
|
Preference number: 6 (lower is better) Translates to: TCLEPPLSPESE*PASGVWVGYEH Trigger: ATGTTCATACCCCACCCACACTCCAGAAGCTGGCAATTCAGACTCTGGTGAGAGAGGAGGCTCTAGGCATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CAA 72 bp | GCCCTTTCTCTCCTGGGCCCACTTCAAGAACCATATTaGTGCTTCATCAAGGCAGGACCTGATGCACAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: ALSLLGPLQEPY*CFIKAGPDAQV Trigger: GACCTGTGCATCAGGTCCTGCCTTGATGAAGCACAAATATGGTTCTTGAAGTGGGCCCAGGAGAGAAAGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS GCA 72 bp | CTTGATATGTCTGCCATCAATGGCCTCCTTGAAAAGTaGTGGGAAGAGTCCATGGGCCATCTCCTCCAGATC | + |
|
Preference number: 6 (lower is better) Translates to: LDMSAINGLLEK*WEESMGHLLQI Trigger: GATCTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCATTGATGGCAGACATATCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CCA 72 bp | GATATGTCTGCCATCAATGGCCTCCTTGAAAAGTGCTaGGAAGAGTCCATGGGCCATCTCCTCCAGATCAGA | + |
|
Preference number: 6 (lower is better) Translates to: DMSAINGLLEKC*EESMGHLLQIR Trigger: TCTGATCTGGAGGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCATTGATGGCAGACATATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CCA 72 bp | TCAGTAGTCCTCATCAATGCACCCACAGGGAGACAGTaGAAAGGCCAGGCTATCACCAATGCCTTTATGAGC | + |
|
Preference number: 6 (lower is better) Translates to: SVVLINAPTGRQ*KGQAITNAFMS Trigger: GCTCATAAAGGCATTGGTGATAGCCTGGCCTTTCCACTGTCTCCCTGTGGGTGCATTGATGAGGACTACTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS GCA 72 bp | CTTTCTCTCCTGGGCCCACTTCAAGAACCATATTTGTaGTTCATCAAGGCAGGACCTGATGCACAGGTCAAC | + |
|
Preference number: 6 (lower is better) Translates to: LSLLGPLQEPYL*FIKAGPDAQVN Trigger: GTTGACCTGTGCATCAGGTCCTGCCTTGATGAAGCACAAATATGGTTCTTGAAGTGGGCCCAGGAGAGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CCA 72 bp | CGAGAAACTGTAGCTTTTTCCTGGGGTGAAACCCTATaGTTCGACGAATGTCTACTCCATCTAGCACAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: RETVAFSWGETL*FDECLLHLAQP Trigger: AGGCTGTGCTAGATGGAGTAGACATTCGTCGAACCATAGGGTTTCACCCCAGGAAAAAGCTACAGTTTCTCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097478.4 |
||
| CDS CCA 72 bp | GCACATTCCTCAGGTCGAGAAACTGTAGCTTTTTCCTaGGGTGAAACCCTATGGTTCGACGAATGTCTACTC | + |
|
Preference number: 6 (lower is better) Translates to: AHSSGRETVAFS*GETLWFDECLL Trigger: GAGTAGACATTCGTCGAACCATAGGGTTTCACCCCAGGAAAAAGCTACAGTTTCTCGACCTGAGGAATGTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097478.4 |
||
| CDS CAA 72 bp | TTTATGAGCTTGATATGTCTGCCATCAATGGCCTCCTaGAAAAGTGCTGGGAAGAGTCCATGGGCCATCTCC | + |
|
Preference number: 6 (lower is better) Translates to: FMSLICLPSMAS*KSAGKSPWAIS Trigger: GGAGATGGCCCATGGACTCTTCCCAGCACTTTTCAAGGAGGCCATTGATGGCAGACATATCAAGCTCATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CCA 72 bp | CACTTGACTTCGGTGACTCTTGTTCTATTGGGTAAATaGAAGTCGATTTTGTGGAGGGGTGCCAGGAAGACT | + |
|
Preference number: 6 (lower is better) Translates to: HLTSVTLVLLGK*KSILWRGARKT Trigger: AGTCTTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACCGAAGTCAAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CAA 90 bp | TTGACTTCGGTGACTCTTGTTCTATTGGGTAAATGGAAGTCGATTTaGTGGAGGGGTGCCAGGAAGACTTTGCGAAGATTTCTCATCTGC | + |
|
Preference number: 6 (lower is better) Translates to: LTSVTLVLLGKWKSI*WRGARKTLRRFLIC Trigger: GCAGATGAGAAATCTTCGCAAAGTCTTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACCGAAGTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CAA 72 bp | TGGAAAGGCCAGGCTATCACCAATGCCTTTATGAGCTaGATATGTCTGCCATCAATGGCCTCCTTGAAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: WKGQAITNAFMS*ICLPSMASLKS Trigger: ACTTTTCAAGGAGGCCATTGATGGCAGACATATCAAGCTCATAAAGGCATTGGTGATAGCCTGGCCTTTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CAA 90 bp | GAAGCAAACTTGTTGATACACTTGACTTCGGTGACTCTTGTTCTATaGGGTAAATGGAAGTCGATTTTGTGGAGGGGTGCCAGGAAGACT | + |
|
Preference number: 6 (lower is better) Translates to: EANLLIHLTSVTLVL*GKWKSILWRGARKT Trigger: AGTCTTCCTGGCACCCCTCCACAAAATCGACTTCCATTTACCCAATAGAACAAGAGTCACCGAAGTCAAGTGTATCAACAAGTTTGCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CCA 72 bp | CTGTCTTCTGAATCAGTCCATATGTTCCAGAAGCTATaGTGCACATTCCTCAGGTCGAGAAACTGTAGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: LSSESVHMFQKL*CTFLRSRNCSF Trigger: AAAGCTACAGTTTCTCGACCTGAGGAATGTGCACCATAGCTTCTGGAACATATGGACTGATTCAGAAGACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||
| CDS CCA 72 bp | TTTGTACAGCAGAAATATAGGGAGCCCTTTCTCTCCTaGGCCCACTTCAAGAACCATATTTGTGCTTCATCA | + |
|
Preference number: 6 (lower is better) Translates to: FVQQKYREPFLS*AHFKNHICASS Trigger: TGATGAAGCACAAATATGGTTCTTGAAGTGGGCCCAGGAGAGAAAGGGCTCCCTATATTTCTGCTGTACAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086050.3 ENSMUST00000097478.4 |
||