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Pregenerated sensors for PRAMEL39 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094560

Ensembl transcript IDs: ENSMUST00000097479.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TGTCTCAAGACTGTCATTTATTCACATGCAGAAGTTCTGAATCCATGTTCACCGGAGAGGCTCTTGGGCTaGCTTATTGCCCTTAGTGTA +
Preference number: 2 (lower is better)
Translates to: CLKTVIYSHAEVLNPCSPERLLG*LIALSV
Trigger: TACACTAAGGGCAATAAGGCAGCCCAAGAGCCTCTC...CGGTGAACATGGATTCAGAACTTCTGCATGTGAATAAATGACAGTCTTGAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097479.2
3UTR-3UTR CCA 90 bp TCTGCTCCCCATGTCAAGCTTAGCCTCCAAAATCCCAATTATTGTACATCCTTTCAAAAGAGAGGCTCTTaGGCTGCCTTATTGCCCTTA +
Preference number: 2 (lower is better)
Translates to: SAPHVKLSLQNPNYCTSFQKRGS*AALLPL
Trigger: TAAGGGCAATAAGGCAGCCCAAGAGCCTCTCTTTTG...AAAGGATGTACAATAATTGGGATTTTGGAGGCTAAGCTTGACATGGGGAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097479.2
3UTR-3UTR TCA 90 bp TGTCTCAAGACTGTCATTTATTCACATGCAGAAGTTCTGAATCCATGTTCACCGGTATCCATGAGTTCCTaGCAAAGTTGGGCAAATCTT +
Preference number: 2 (lower is better)
Translates to: CLKTVIYSHAEVLNPCSPVSMSS*QSWANL
Trigger: AAGATTTGCCCAACTTTGTCAGGAACTCATGGATAC...CGGTGAACATGGATTCAGAACTTCTGCATGTGAATAAATGACAGTCTTGAGACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097479.2
3UTR TCA 72 bp GGCTGCCTTATTGCCCTTAGTGTATCCATGAGTTCCTaGCAAAGTTGGGCAAATCTTTCTACAGAGACATGT +
Preference number: 3 (lower is better)
Translates to: GCLIALSVSMSS*QSWANLSTETC
Trigger: ACATGTCTCTGTAGAAAGATTTGCCCAACTTTGTCAGGAACTCATGGATACACTAAGGGCAATAAGGCAGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097479.2
3UTR GCA 72 bp ATGAGAGATGTGTCTCAAGACTGTCATTTATTCACATaGAGAAGTTCTGAATCCATGTTCACCGCCAGCAAA +
Preference number: 3 (lower is better)
Translates to: MRDVSQDCHLFT*RSSESMFTASK
Trigger: TTTGCTGGCGGTGAACATGGATTCAGAACTTCTGCATGTGAATAAATGACAGTCTTGAGACACATCTCTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097479.2
3UTR-3UTR CAA 90 bp TGTCTCAAGACTGTCATTTATTCACATGCAGAAGTTCTGAATCCATGTTCACCGGAGTTCCTGACAAAGTaGGGCAAATCTTTCTACAGA +
Preference number: 3 (lower is better)
Translates to: CLKTVIYSHAEVLNPCSPEFLTK*GKSFYR
Trigger: TCTGTAGAAAGATTTGCCCAACTTTGTCAGGAACTC...CGGTGAACATGGATTCAGAACTTCTGCATGTGAATAAATGACAGTCTTGAGACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097479.2
3UTR TCA 72 bp GTCTCAAGACTGTCATTTATTCACATGCAGAAGTTCTaGATCCATGTTCACCGCCAGCAAAAACAAAGTCTA +
Preference number: 3 (lower is better)
Translates to: VSRLSFIHMQKF*IHVHRQQKQSL
Trigger: TAGACTTTGTTTTTGCTGGCGGTGAACATGGATTCAGAACTTCTGCATGTGAATAAATGACAGTCTTGAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097479.2
CDS-3UTR GCA 90 bp TTGCCAGTCCACAAGTCTGCTCCCCATGTCAAGCTTAGCCTCCAAAATCCCAATCCTGAGGCACAGGTCTaGTACCACTTTCAGCTGCTT +
Preference number: 4 (lower is better)
Translates to: LPVHKSAPHVKLSLQNPNPEAQV*YHFQLL
Trigger: AAGCAGCTGAAAGTGGTAGCAGACCTGTGCCTCAGG...ATTGGGATTTTGGAGGCTAAGCTTGACATGGGGAGCAGACTTGTGGACTGGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097479.2
CDS CCA 90 bp CATGAGCTTCTTAAGTCTGCCAGCAAAGGCCTCCTTGAACAGAGCTaGGAAGAGCAGAAAAGGCACCTCCTCCAGACAGAACAAGGCCAA +
Preference number: 5 (lower is better)
Translates to: HELLKSASKGLLEQS*EEQKRHLLQTEQGQ
Trigger: TTGGCCTTGTTCTGTCTGGAGGAGGTGCCTTTTCTGCTCTTCCCAGCTCTGTTCAAGGAGGCCTTTGCTGGCAGACTTAAGAAGCTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097479.2
CDS CCA 90 bp CTCATGTGGTCTGTGAGAAAGTGGACACCTTGCATGGAGAGATGCTaGAGACAATTGAATTTGGAGAAGATAGAAACGAACTCCTTGACA +
Preference number: 5 (lower is better)
Translates to: LMWSVRKWTPCMERC*RQLNLEKIETNSLT
Trigger: TGTCAAGGAGTTCGTTTCTATCTTCTCCAAATTCAATTGTCTCCAGCATCTCTCCATGCAAGGTGTCCACTTTCTCACAGACCACATGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097479.2