Pregenerated sensors for PRAMEL38 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096259Ensembl transcript IDs: ENSMUST00000179743.3
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATACTGTCTGGGCAGAAGCCACATATAAATGCCAAACTGTTTTTCTaGCTCCATCATGCCCCTGGTCCAACAGTCTATTGGAATAGTCCA | + |
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Preference number: 1 (lower is better) Translates to: ILSGQKPHINAKLFF*LHHAPGPTVYWNSP Trigger: TGGACTATTCCAATAGACTGTTGGACCAGGGGCATGATGGAGTCAGAAAAACAGTTTGGCATTTATATGTGGCTTCTGCCCAGACAGTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| 3UTR CCA 90 bp | CCTGACACTGAACCTGGTAGTAAGGTTGGAAAAAGTCCAAGACCCTaGGAAGACATCATCCAGGTTGATAGGTACACAAAAAGCATCTAT | + |
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Preference number: 1 (lower is better) Translates to: PDTEPGSKVGKSPRP*EDIIQVDRYTKSIY Trigger: ATAGATGCTTTTTGTGTACCTATCAACCTGGATGATGTCTTCCCAGGGTCTTGGACTTTTTCCAACCTTACTACCAGGTTCAGTGTCAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| 3UTR TCA 90 bp | CATAGACTGTATATAGAGGTTCTTTTTAGTAAGCTCATTAAGGCATaGCACAAAGTTCAGGAGTTCAAAGCTAGAATGGAAAGCCTGTTT | + |
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Preference number: 1 (lower is better) Translates to: HRLYIEVLFSKLIKA*HKVQEFKARMESLF Trigger: AAACAGGCTTTCCATTCTAGCTTTGAACTCCTGAACTTTGTGTCATGCCTTAATGAGCTTACTAAAAAGAACCTCTATATACAGTCTATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| 3UTR CAA 90 bp | GTAAGGTTGGAAAAAGTCCAAGACCCTGGGAAGACATCATCCAGGTaGATAGGTACACAAAAAGCATCTATATATACTGTCTGGGCAGAA | + |
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Preference number: 2 (lower is better) Translates to: VRLEKVQDPGKTSSR*IGTQKASIYTVWAE Trigger: TTCTGCCCAGACAGTATATATAGATGCTTTTTGTGTACCTATCAACCTGGATGATGTCTTCCCAGGGTCTTGGACTTTTTCCAACCTTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| 3UTR CAA 90 bp | CACAAAGTTCAGGAGTTCAAAGCTAGAATGGAAAGCCTGTTTACTTaGCTCTATGTTGTCTTCTTACCTTTAGGCATCTTTGAGGGGTCC | + |
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Preference number: 2 (lower is better) Translates to: HKVQEFKARMESLFT*LYVVFLPLGIFEGS Trigger: GGACCCCTCAAAGATGCCTAAAGGTAAGAAGACAACATAGAGCAAAGTAAACAGGCTTTCCATTCTAGCTTTGAACTCCTGAACTTTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| 3UTR CCA 72 bp | GAACCTGGTAGTAAGGTTGGAAAAAGTCCAAGACCCTaGGAAGACATCATCCAGGTTGATAGGTACACAAAA | + |
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Preference number: 3 (lower is better) Translates to: EPGSKVGKSPRP*EDIIQVDRYTK Trigger: TTTTGTGTACCTATCAACCTGGATGATGTCTTCCCAGGGTCTTGGACTTTTTCCAACCTTACTACCAGGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| 3UTR CCA 72 bp | TTGAGGGGTCCAAGGTGCCTTGTGGTCTCAACATACTaGATATTAACCATCTGTGATCATTTTAATCCCTCT | + |
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Preference number: 3 (lower is better) Translates to: LRGPRCLVVSTY*ILTICDHFNPS Trigger: AGAGGGATTAAAATGATCACAGATGGTTAATATCCAGTATGTTGAGACCACAAGGCACCTTGGACCCCTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| 3UTR CCA 72 bp | AGGCATGACACAAAGTTCAGGAGTTCAAAGCTAGAATaGAAAGCCTGTTTACTTTGCTCTATGTTGTCTTCT | + |
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Preference number: 3 (lower is better) Translates to: RHDTKFRSSKLE*KACLLCSMLSS Trigger: AGAAGACAACATAGAGCAAAGTAAACAGGCTTTCCATTCTAGCTTTGAACTCCTGAACTTTGTGTCATGCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| 3UTR-3UTR CAA 90 bp | GTCTTTTTGAAAGTAAATACTTTATGTAGCAAAGGTACCTGCATAATAGTGGGCAACCTGGTAGTAAGGTaGGAAAAAGTCCAAGACCCT | + |
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Preference number: 3 (lower is better) Translates to: VFLKVNTLCSKGTCIIVGNLVVR*EKVQDP Trigger: AGGGTCTTGGACTTTTTCCAACCTTACTACCAGGTT...GCCCACTATTATGCAGGTACCTTTGCTACATAAAGTATTTACTTTCAAAAAGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS-3UTR CCA 90 bp | CTGAACCTGGTAGTAAGGTTGGAAAAAGTCCAAGACCCTGGGAAGACATCATCCCTCGCTTCTGGAGTGTaGGTGGGGTCTGACCACTCA | + |
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Preference number: 4 (lower is better) Translates to: LNLVVRLEKVQDPGKTSSLASGV*VGSDHS Trigger: TGAGTGGTCAGACCCCACCCACACTCCAGAAGCGAG...GGATGATGTCTTCCCAGGGTCTTGGACTTTTTCCAACCTTACTACCAGGTTCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS-3UTR CCA 90 bp | CTGGTAGTAAGGTTGGAAAAAGTCCAAGACCCTGGGAAGACATCATCCAGGTTGCCCACAGGGAGATATTaGAAAGGCCAGGCTGCCACC | + |
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Preference number: 4 (lower is better) Translates to: LVVRLEKVQDPGKTSSRLPTGRY*KGQAAT Trigger: GGTGGCAGCCTGGCCTTTCCAATATCTCCCTGTGGG...CAACCTGGATGATGTCTTCCCAGGGTCTTGGACTTTTTCCAACCTTACTACCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS-3UTR CCA 90 bp | CTGAACCTGGTAGTAAGGTTGGAAAAAGTCCAAGACCCTGGGAAGACATCATCCCCAGCAAAGGCCTCTTaGAACAGCCATGGGACGTAC | + |
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Preference number: 4 (lower is better) Translates to: LNLVVRLEKVQDPGKTSSPAKAS*NSHGTY Trigger: GTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGG...GGATGATGTCTTCCCAGGGTCTTGGACTTTTTCCAACCTTACTACCAGGTTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS-3UTR CCA 90 bp | CTGAACCTGGTAGTAAGGTTGGAAAAAGTCCAAGACCCTGGGAAGACATCATCCTCATCTTGCTCCAGGTaGCTGTGTGCTGCAAAAGGT | + |
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Preference number: 4 (lower is better) Translates to: LNLVVRLEKVQDPGKTSSSSCSR*LCAAKG Trigger: ACCTTTTGCAGCACACAGCCACCTGGAGCAAGATGA...GGATGATGTCTTCCCAGGGTCTTGGACTTTTTCCAACCTTACTACCAGGTTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS-3UTR CCA 90 bp | AACCTGGTAGTAAGGTTGGAAAAAGTCCAAGACCCTGGGAAGACATCATCCAGGATGTTCCAGAAGACATaGTGCACATTTCTCATGTCG | + |
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Preference number: 4 (lower is better) Translates to: NLVVRLEKVQDPGKTSSRMFQKT*CTFLMS Trigger: CGACATGAGAAATGTGCACCATGTCTTCTGGAACAT...CCTGGATGATGTCTTCCCAGGGTCTTGGACTTTTTCCAACCTTACTACCAGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS-3UTR TCA 90 bp | CTGAACCTGGTAGTAAGGTTGGAAAAAGTCCAAGACCCTGGGAAGACATCATCCATGCATATTTATCAATaGCCCCACAGGGAGATATTG | + |
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Preference number: 4 (lower is better) Translates to: LNLVVRLEKVQDPGKTSSMHIYQ*PHREIL Trigger: CAATATCTCCCTGTGGGGTCATTGATAAATATGCAT...GGATGATGTCTTCCCAGGGTCTTGGACTTTTTCCAACCTTACTACCAGGTTCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS-3UTR CCA 90 bp | CCCTGGGAAGACATCATCCAGGTTGATAGGTACACAAAAAGCATCTATATATACTCTCCAGAGGGGATATaGCCAAAGCCTCATCTCTCA | + |
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Preference number: 4 (lower is better) Translates to: PWEDIIQVDRYTKSIYIYSPEGI*PKPHLS Trigger: TGAGAGATGAGGCTTTGGCCATATCCCCTCTGGAGA...GTATATATAGATGCTTTTTGTGTACCTATCAACCTGGATGATGTCTTCCCAGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| 3UTR CAA 72 bp | TATTCTATCATCCTGACACTGAACCTGGTAGTAAGGTaGGAAAAAGTCCAAGACCCTGGGAAGACATCATCC | + |
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Preference number: 4 (lower is better) Translates to: YSIILTLNLVVR*EKVQDPGKTSS Trigger: GGATGATGTCTTCCCAGGGTCTTGGACTTTTTCCAACCTTACTACCAGGTTCAGTGTCAGGATGATAGAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS-3UTR TCA 90 bp | GCACCTTGGATGAGAGATGTGTCCCAAGCATGTCATTTATTCATAGTCAGAATACCACCATTGTCTTTATaGGCGAGTTGTATCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: APWMRDVSQACHLFIVRIPPLSL*ASCICQ Trigger: CTGGCAGATACAACTCGCTCATAAAGACAATGGTGG...TATTCTGACTATGAATAAATGACATGCTTGGGACACATCTCTCATCCAAGGTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| 3UTR CAA 72 bp | CAGGAGTTCAAAGCTAGAATGGAAAGCCTGTTTACTTaGCTCTATGTTGTCTTCTTACCTTTAGGCATCTTT | + |
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Preference number: 4 (lower is better) Translates to: QEFKARMESLFT*LYVVFLPLGIF Trigger: AAAGATGCCTAAAGGTAAGAAGACAACATAGAGCAAAGTAAACAGGCTTTCCATTCTAGCTTTGAACTCCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS CCA 90 bp | ACCATTGTCTTTATGAGCGAGTTGTATCTGCCAGCAAAGGCCTCTTaGAACAGCCATGGGACGTACACAGCTGGCACGTTCTCCAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: TIVFMSELYLPAKAS*NSHGTYTAGTFSRG Trigger: CCCTCTGGAGAACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGATACAACTCGCTCATAAAGACAATGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS GCA 90 bp | TTCAGACGCTGCCTCAGTGCATATCTGGGAAGGGCCTTCACTACTTaGTTTTCATCCAAGGTCTCTGCATCAGAGTCACTGTCATTTGCA | + |
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Preference number: 5 (lower is better) Translates to: FRRCLSAYLGRAFTT*FSSKVSASESLSFA Trigger: TGCAAATGACAGTGACTCTGATGCAGAGACCTTGGATGAAAAGCAAGTAGTGAAGGCCCTTCCCAGATATGCACTGAGGCAGCGTCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS GCA 90 bp | ATATCTGGGAAGGGCCTTCACTACTTGCTTTTCATCCAAGGTCTCTaGATCAGAGTCACTGTCATTTGCATCGCTCCCTATGTTCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: ISGKGLHYLLFIQGL*IRVTVICIAPYVPE Trigger: TTCTGGAACATAGGGAGCGATGCAAATGACAGTGACTCTGATGCAGAGACCTTGGATGAAAAGCAAGTAGTGAAGGCCCTTCCCAGATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS GCA 90 bp | CTCTGGATGAAAAACATTCATGATTTCTCTGATAACTTTGTCTGGTaGATCCCAGATCTTCATCTTTGTACAGCAGAAATTTATGGACCC | + |
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Preference number: 5 (lower is better) Translates to: LWMKNIHDFSDNFVW*IPDLHLCTAEIYGP Trigger: GGGTCCATAAATTTCTGCTGTACAAAGATGAAGATCTGGGATGCACCAGACAAAGTTATCAGAGAAATCATGAATGTTTTTCATCCAGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS CCA 72 bp | GGACGTACACAGCTGGCACGTTCTCCAGAGGGGATATaGCCAAAGCCTCATCTCTCAGCTGTGTCTGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: GRTQLARSPEGI*PKPHLSAVSAL Trigger: CAAGGCAGACACAGCTGAGAGATGAGGCTTTGGCCATATCCCCTCTGGAGAACGTGCCAGCTGTGTACGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS TCA 72 bp | AGGAATCCAAGTCTGTCTGTGAAATTAGGCAGTGAGTaGTGGAGAGGGTCTGCAAGGGCGTCCTCAGGCACC | + |
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Preference number: 6 (lower is better) Translates to: RNPSLSVKLGSE*WRGSARASSGT Trigger: GGTGCCTGAGGACGCCCTTGCAGACCCTCTCCATCACTCACTGCCTAATTTCACAGACAGACTTGGATTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS CAA 90 bp | CACCATTGTCTTTATGAGCGAGTTGTATCTGCCAGCAAAGGCCTCTaGGAACAGCCATGGGACGTACACAGCTGGCACGTTCTCCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: HHCLYERVVSASKGL*EQPWDVHSWHVLQR Trigger: CCTCTGGAGAACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGATACAACTCGCTCATAAAGACAATGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS CCA 72 bp | TTTATGAGCGAGTTGTATCTGCCAGCAAAGGCCTCTTaGAACAGCCATGGGACGTACACAGCTGGCACGTTC | + |
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Preference number: 6 (lower is better) Translates to: FMSELYLPAKAS*NSHGTYTAGTF Trigger: GAACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGATACAACTCGCTCATAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS CCA 72 bp | GGACAGGGTATTGTTCCACATTCATCTTGCTCCAGGTaGCTGTGTGCTGCAAAAGGTCCTTCAGGATGGCCA | + |
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Preference number: 6 (lower is better) Translates to: GQGIVPHSSCSR*LCAAKGPSGWP Trigger: TGGCCATCCTGAAGGACCTTTTGCAGCACACAGCCACCTGGAGCAAGATGAATGTGGAACAATACCCTGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS CAA 72 bp | CTTTATGAGCGAGTTGTATCTGCCAGCAAAGGCCTCTaGGAACAGCCATGGGACGTACACAGCTGGCACGTT | + |
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Preference number: 6 (lower is better) Translates to: LYERVVSASKGL*EQPWDVHSWHV Trigger: AACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGATACAACTCGCTCATAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS TCA 72 bp | AGGACAATGAGCTGGGAGTCCTTCATGCTACACCACTaGAAATCCAGAGACTTAAGAGTACCTGCCAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: RTMSWESFMLHH*KSRDLRVPASF Trigger: AAAACTGGCAGGTACTCTTAAGTCTCTGGATTTTCAGTGGTGTAGCATGAAGGACTCCCAGCTCATTGTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS CCA 72 bp | TTATGCATATTTATCAATGACCCCACAGGGAGATATTaGAAAGGCCAGGCTGCCACCATTGTCTTTATGAGC | + |
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Preference number: 6 (lower is better) Translates to: LCIFINDPTGRY*KGQAATIVFMS Trigger: GCTCATAAAGACAATGGTGGCAGCCTGGCCTTTCCAATATCTCCCTGTGGGGTCATTGATAAATATGCATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS CCA 72 bp | CATCCCAGATCTTCATCTTTGTACAGCAGAAATTTATaGACCCCTTTCTCTGCTTGGCCCAATTCAAGAAAT | + |
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Preference number: 6 (lower is better) Translates to: HPRSSSLYSRNL*TPFSAWPNSRN Trigger: ATTTCTTGAATTGGGCCAAGCAGAGAAAGGGGTCCATAAATTTCTGCTGTACAAAGATGAAGATCTGGGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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| CDS TCA 72 bp | GCCCAATTCAAGAAATATGCTTTTTCTTCATTGAGCTaGGAACTGATTGACAGATCAACTATGATCTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: AQFKKYAFSSLS*ELIDRSTMIFR Trigger: TCTGAAGATCATAGTTGATCTGTCAATCAGTTCTCAGCTCAATGAAGAAAAAGCATATTTCTTGAATTGGGC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179743.3 |
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